Query 048443
Match_columns 486
No_of_seqs 415 out of 3616
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 16:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.4E-50 2.5E-54 427.9 30.3 425 4-436 244-750 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-45 1.1E-49 396.0 29.1 412 6-430 23-565 (844)
3 3t6q_A CD180 antigen; protein- 100.0 2.7E-43 9.2E-48 368.4 29.2 421 1-428 5-563 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.8E-43 6.3E-48 378.4 28.4 404 4-426 197-718 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-41 4.2E-46 355.9 27.7 392 22-430 29-563 (606)
6 4eco_A Uncharacterized protein 100.0 5.7E-42 2E-46 358.8 23.3 351 33-426 192-601 (636)
7 1ziw_A TOLL-like receptor 3; i 100.0 1E-40 3.5E-45 353.6 32.2 421 3-429 45-626 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 1E-39 3.4E-44 338.9 31.5 404 3-430 2-536 (570)
9 3j0a_A TOLL-like receptor 5; m 100.0 4E-40 1.4E-44 356.1 26.7 393 3-407 44-565 (844)
10 3t6q_A CD180 antigen; protein- 100.0 3.2E-39 1.1E-43 337.6 30.9 390 3-407 53-565 (606)
11 4eco_A Uncharacterized protein 100.0 3.6E-40 1.2E-44 345.2 22.6 337 25-406 206-604 (636)
12 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-39 1.7E-43 340.6 31.5 227 24-259 24-306 (680)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-40 1.9E-44 339.3 19.9 388 23-428 24-513 (549)
14 4ecn_A Leucine-rich repeat pro 100.0 2.2E-39 7.5E-44 345.4 23.1 349 34-426 435-841 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-38 5.7E-43 332.1 28.7 382 7-408 32-564 (606)
16 2id5_A Lingo-1, leucine rich r 100.0 5.1E-39 1.8E-43 326.1 22.2 327 1-387 4-331 (477)
17 3v47_A TOLL-like receptor 5B a 100.0 9E-39 3.1E-43 322.4 22.8 345 2-387 6-382 (455)
18 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-38 2E-42 329.7 29.2 406 4-428 27-583 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 7.7E-39 2.6E-43 341.2 22.2 354 27-426 450-865 (876)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-37 4.8E-42 321.9 28.0 377 3-428 27-513 (562)
21 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.9E-42 314.4 26.6 357 38-429 23-412 (455)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-37 4.9E-42 319.0 23.9 375 25-428 21-484 (520)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-37 5.4E-42 320.9 20.4 371 8-407 27-515 (549)
24 2z63_A TOLL-like receptor 4, v 100.0 1.4E-36 4.8E-41 315.2 27.2 380 7-408 28-537 (570)
25 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-37 2E-41 314.5 23.1 349 7-406 21-485 (520)
26 2id5_A Lingo-1, leucine rich r 100.0 3.1E-36 1.1E-40 305.6 23.9 333 50-429 13-360 (477)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-35 6.5E-40 305.9 23.6 348 7-406 52-514 (562)
28 3o6n_A APL1; leucine-rich repe 100.0 1.2E-34 4E-39 286.3 23.1 324 25-429 45-378 (390)
29 3oja_B Anopheles plasmodium-re 100.0 2E-34 6.7E-39 300.0 23.7 323 26-429 52-384 (597)
30 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-34 6.1E-39 275.8 18.3 258 72-434 50-312 (313)
31 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-33 1.6E-37 292.3 29.3 380 8-406 53-584 (635)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-33 5E-38 283.0 23.2 193 32-259 50-243 (457)
33 1xku_A Decorin; proteoglycan, 100.0 1.5E-32 5E-37 264.9 27.7 281 33-387 40-330 (330)
34 3o6n_A APL1; leucine-rich repe 100.0 2.1E-33 7.2E-38 277.3 22.1 302 46-428 43-355 (390)
35 1o6v_A Internalin A; bacterial 100.0 1.2E-32 4.2E-37 278.2 27.1 227 26-286 47-275 (466)
36 1jl5_A Outer protein YOPM; leu 100.0 1.8E-32 6.2E-37 274.8 27.7 358 6-426 10-410 (454)
37 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-33 2.5E-37 267.3 24.0 286 27-387 35-331 (332)
38 1ogq_A PGIP-2, polygalacturona 100.0 5.7E-34 1.9E-38 272.3 15.8 249 48-387 50-302 (313)
39 1o6v_A Internalin A; bacterial 100.0 5.2E-32 1.8E-36 273.6 27.7 330 6-403 45-389 (466)
40 3oja_B Anopheles plasmodium-re 100.0 8.9E-33 3.1E-37 287.5 22.6 302 46-428 49-361 (597)
41 1jl5_A Outer protein YOPM; leu 100.0 8.3E-32 2.8E-36 270.0 27.7 311 48-426 91-430 (454)
42 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-32 5.5E-37 275.4 21.9 336 32-408 26-393 (457)
43 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6.1E-36 259.2 27.2 297 44-402 40-346 (347)
44 4fmz_A Internalin; leucine ric 100.0 2.5E-31 8.5E-36 258.2 27.2 301 25-389 44-346 (347)
45 1xku_A Decorin; proteoglycan, 100.0 1.1E-30 3.7E-35 251.9 27.5 265 48-387 31-304 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-31 1.6E-35 254.6 23.2 264 48-387 33-305 (332)
47 2z80_A TOLL-like receptor 2, v 100.0 1.3E-30 4.3E-35 253.8 14.1 261 39-387 45-312 (353)
48 1ozn_A Reticulon 4 receptor; N 100.0 5.5E-29 1.9E-33 234.8 22.0 209 40-260 26-236 (285)
49 2z66_A Variable lymphocyte rec 100.0 1.5E-29 5.1E-34 241.2 18.4 207 40-259 22-233 (306)
50 2z66_A Variable lymphocyte rec 100.0 1.5E-29 5.2E-34 241.2 17.3 246 51-387 10-259 (306)
51 3zyi_A Leucine-rich repeat-con 100.0 9.2E-29 3.2E-33 248.8 22.3 247 1-259 47-300 (452)
52 3zyj_A Leucine-rich repeat-con 100.0 1.2E-28 4E-33 247.1 22.7 247 1-259 36-289 (440)
53 1z7x_W Ribonuclease inhibitor; 100.0 5.4E-32 1.8E-36 273.3 -3.6 328 44-403 24-412 (461)
54 4fcg_A Uncharacterized protein 100.0 1.7E-28 5.9E-33 235.7 18.6 226 25-259 81-311 (328)
55 4fcg_A Uncharacterized protein 100.0 2.2E-28 7.6E-33 234.9 18.8 65 328-392 253-317 (328)
56 2z80_A TOLL-like receptor 2, v 100.0 8.1E-29 2.8E-33 241.0 15.9 275 47-427 30-316 (353)
57 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-28 9.9E-33 229.8 18.5 243 102-408 14-267 (285)
58 3zyi_A Leucine-rich repeat-con 100.0 1.8E-27 6.3E-32 239.3 24.5 244 50-387 56-301 (452)
59 3zyj_A Leucine-rich repeat-con 100.0 1.7E-27 6E-32 238.6 24.1 244 50-387 45-290 (440)
60 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-30 4.5E-35 263.2 -1.8 363 7-402 3-440 (461)
61 1wwl_A Monocyte differentiatio 100.0 2.2E-29 7.4E-34 240.6 5.4 249 44-389 39-309 (312)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2E-29 6.9E-34 241.4 3.4 153 43-214 29-182 (317)
63 1wwl_A Monocyte differentiatio 99.9 4.6E-29 1.6E-33 238.3 4.5 237 98-403 42-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 2E-28 6.8E-33 234.4 6.2 236 49-387 11-248 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-25 4.7E-30 231.7 27.3 250 32-389 48-297 (622)
66 3oja_A Leucine-rich immune mol 99.9 6.5E-28 2.2E-32 244.1 7.9 174 44-238 30-204 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-25 9E-30 229.7 26.4 252 49-407 41-302 (622)
68 2z62_A TOLL-like receptor 4, v 99.9 2.1E-25 7.3E-30 209.1 19.7 200 49-259 29-234 (276)
69 2o6q_A Variable lymphocyte rec 99.9 7.6E-25 2.6E-29 204.6 22.0 193 33-238 25-218 (270)
70 2z62_A TOLL-like receptor 4, v 99.9 6.3E-25 2.1E-29 205.9 19.0 209 22-241 25-240 (276)
71 3oja_A Leucine-rich immune mol 99.9 1.4E-25 4.8E-30 227.0 13.4 237 23-284 32-270 (487)
72 2xwt_C Thyrotropin receptor; s 99.9 9.9E-25 3.4E-29 200.0 15.8 202 39-259 25-236 (239)
73 2o6q_A Variable lymphocyte rec 99.9 1.2E-23 4E-28 196.5 22.0 200 48-260 16-216 (270)
74 3rfs_A Internalin B, repeat mo 99.9 2.4E-24 8E-29 201.4 16.6 180 44-237 37-217 (272)
75 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.6E-28 197.9 20.4 200 44-259 6-205 (290)
76 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.3E-28 198.1 19.3 190 32-238 18-208 (290)
77 3rfs_A Internalin B, repeat mo 99.9 7.2E-24 2.5E-28 198.1 16.4 198 127-408 40-241 (272)
78 3ogk_B Coronatine-insensitive 99.9 2.5E-25 8.6E-30 231.7 -0.2 347 46-403 110-527 (592)
79 3goz_A Leucine-rich repeat-con 99.9 3.4E-24 1.1E-28 209.0 6.5 199 32-239 6-239 (362)
80 3goz_A Leucine-rich repeat-con 99.9 2.6E-24 9.1E-29 209.7 5.7 199 52-259 2-235 (362)
81 3m19_A Variable lymphocyte rec 99.9 2.8E-22 9.5E-27 185.0 18.8 165 40-239 29-193 (251)
82 3ogk_B Coronatine-insensitive 99.9 4.1E-25 1.4E-29 230.0 -0.3 347 32-389 120-526 (592)
83 2ca6_A RAN GTPase-activating p 99.9 2.3E-24 7.9E-29 212.2 3.3 42 328-369 274-320 (386)
84 3m19_A Variable lymphocyte rec 99.9 5.9E-22 2E-26 182.8 19.0 175 73-260 15-190 (251)
85 2xwt_C Thyrotropin receptor; s 99.9 9.7E-23 3.3E-27 186.7 13.4 219 1-236 5-237 (239)
86 2ast_B S-phase kinase-associat 99.9 1.3E-23 4.5E-28 202.7 8.0 80 328-408 222-312 (336)
87 4glp_A Monocyte differentiatio 99.9 4.5E-23 1.5E-27 196.6 10.6 199 46-260 89-305 (310)
88 2ca6_A RAN GTPase-activating p 99.9 3.3E-24 1.1E-28 211.1 2.6 62 328-389 244-316 (386)
89 4glp_A Monocyte differentiatio 99.9 2.5E-22 8.4E-27 191.5 15.5 226 48-288 64-306 (310)
90 1h6u_A Internalin H; cell adhe 99.9 6.3E-22 2.2E-26 188.2 16.5 200 32-259 27-227 (308)
91 2ast_B S-phase kinase-associat 99.9 2.4E-23 8.3E-28 200.9 5.7 255 49-374 48-315 (336)
92 4ay9_X Follicle-stimulating ho 99.9 1.1E-21 3.7E-26 190.2 15.6 200 2-214 5-215 (350)
93 4ay9_X Follicle-stimulating ho 99.9 1.6E-21 5.4E-26 189.1 13.1 240 75-387 12-257 (350)
94 1h6u_A Internalin H; cell adhe 99.9 5E-21 1.7E-25 182.0 15.6 189 25-239 41-231 (308)
95 2p1m_B Transport inhibitor res 99.9 1.4E-23 4.7E-28 218.6 -2.3 343 46-402 103-519 (594)
96 2o6s_A Variable lymphocyte rec 99.8 1.9E-20 6.6E-25 167.5 16.8 149 102-259 10-158 (208)
97 2o6s_A Variable lymphocyte rec 99.8 6.4E-21 2.2E-25 170.6 12.4 168 40-226 22-190 (208)
98 3cvr_A Invasion plasmid antige 99.8 1.9E-20 6.4E-25 191.1 15.2 182 49-269 60-248 (571)
99 2p1m_B Transport inhibitor res 99.8 1.2E-22 4.1E-27 211.5 -3.3 369 43-424 61-518 (594)
100 1h6t_A Internalin B; cell adhe 99.8 3.1E-20 1.1E-24 175.0 11.8 183 32-240 32-215 (291)
101 2xot_A Amphoterin-induced prot 99.8 4.5E-20 1.5E-24 179.6 12.8 116 40-166 33-150 (361)
102 3cvr_A Invasion plasmid antige 99.8 2.3E-19 7.9E-24 183.1 17.1 49 328-377 207-255 (571)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-19 1.5E-23 160.0 15.5 111 127-238 56-166 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 4.6E-19 1.6E-23 159.8 15.5 138 40-189 26-164 (220)
105 1m9s_A Internalin B; cell inva 99.8 2.2E-19 7.5E-24 185.2 14.6 186 32-243 29-215 (605)
106 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.7E-23 157.3 16.3 149 102-259 14-162 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.7E-23 157.3 16.1 150 102-260 14-164 (220)
108 1m9s_A Internalin B; cell inva 99.8 7.5E-19 2.6E-23 181.2 14.8 167 49-239 22-189 (605)
109 2xot_A Amphoterin-induced prot 99.8 3.1E-18 1.1E-22 166.5 17.0 172 75-259 21-199 (361)
110 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 4.9E-23 163.6 13.9 186 48-259 24-210 (291)
111 3e6j_A Variable lymphocyte rec 99.8 6.6E-18 2.2E-22 153.2 16.8 151 50-214 21-172 (229)
112 1dce_A Protein (RAB geranylger 99.8 5.4E-21 1.9E-25 196.0 -4.9 201 44-255 345-566 (567)
113 3e6j_A Variable lymphocyte rec 99.8 7.5E-18 2.6E-22 152.8 16.4 150 100-259 20-169 (229)
114 1xeu_A Internalin C; cellular 99.8 1E-18 3.5E-23 162.0 10.5 166 27-216 21-187 (263)
115 4ezg_A Putative uncharacterize 99.8 1.9E-18 6.6E-23 153.0 11.4 151 70-238 42-194 (197)
116 1xeu_A Internalin C; cellular 99.7 2.3E-18 7.9E-23 159.6 8.5 170 46-240 17-187 (263)
117 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.9E-23 183.6 6.9 181 39-238 215-404 (727)
118 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 147.6 11.9 147 98-259 43-191 (197)
119 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.5E-22 146.3 11.6 139 1-169 3-143 (192)
120 4b8c_D Glucose-repressible alc 99.7 2.8E-18 9.5E-23 181.4 4.8 181 48-244 173-360 (727)
121 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.7E-21 140.3 14.4 130 102-240 11-141 (192)
122 1dce_A Protein (RAB geranylger 99.7 3.4E-19 1.2E-23 182.7 -5.3 195 24-232 348-567 (567)
123 2wfh_A SLIT homolog 2 protein 99.7 9.3E-16 3.2E-20 134.9 14.3 127 102-238 13-139 (193)
124 2ell_A Acidic leucine-rich nuc 99.7 9.7E-17 3.3E-21 138.1 7.7 132 48-191 24-161 (168)
125 3sb4_A Hypothetical leucine ri 99.7 4.9E-16 1.7E-20 149.0 13.0 219 47-282 48-327 (329)
126 2ell_A Acidic leucine-rich nuc 99.7 4.3E-16 1.5E-20 134.1 11.1 131 98-238 23-160 (168)
127 4fdw_A Leucine rich hypothetic 99.7 6.1E-15 2.1E-19 144.6 20.7 204 34-256 122-330 (401)
128 2je0_A Acidic leucine-rich nuc 99.7 1.2E-16 4.1E-21 134.6 7.0 126 128-256 17-147 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 3.1E-15 1E-19 131.6 14.3 126 130-260 12-137 (193)
130 2o6r_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 130.3 13.7 132 101-241 9-140 (177)
131 2je0_A Acidic leucine-rich nuc 99.6 6E-16 2.1E-20 130.3 8.9 107 48-165 17-126 (149)
132 3sb4_A Hypothetical leucine ri 99.6 7.1E-15 2.4E-19 140.9 14.2 236 6-256 48-328 (329)
133 4fdw_A Leucine rich hypothetic 99.6 6.7E-14 2.3E-18 137.2 19.7 246 69-388 110-357 (401)
134 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 124.8 13.9 128 129-260 8-135 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.6 5.2E-15 1.8E-19 128.2 10.2 129 98-238 18-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.6 8.5E-17 2.9E-21 142.5 -3.3 131 92-238 43-185 (198)
137 1a9n_A U2A', U2A'; complex (nu 99.6 6.8E-15 2.3E-19 127.5 8.7 109 43-165 14-126 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 5.1E-17 1.7E-21 143.9 -6.4 154 44-214 14-185 (198)
139 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 117.5 11.6 105 131-239 12-116 (170)
140 3g39_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 115.5 11.7 107 100-215 10-116 (170)
141 2r9u_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 115.9 11.5 104 131-238 15-118 (174)
142 2r9u_A Variable lymphocyte rec 99.4 8.8E-13 3E-17 113.7 11.7 105 101-214 14-118 (174)
143 4fs7_A Uncharacterized protein 99.4 9.1E-12 3.1E-16 122.4 20.4 204 36-258 59-262 (394)
144 4fs7_A Uncharacterized protein 99.4 1.5E-11 5E-16 120.9 21.4 294 60-386 59-353 (394)
145 3un9_A NLR family member X1; l 99.3 1.9E-14 6.7E-19 139.7 -4.9 167 72-245 72-259 (372)
146 3un9_A NLR family member X1; l 99.3 1.1E-13 3.6E-18 134.5 -0.8 86 128-214 155-252 (372)
147 2ifg_A High affinity nerve gro 99.3 1.3E-11 4.5E-16 119.0 11.7 96 35-141 20-116 (347)
148 4gt6_A Cell surface protein; l 99.3 3.1E-10 1.1E-14 111.4 21.0 294 41-387 56-368 (394)
149 2ifg_A High affinity nerve gro 99.2 2.5E-11 8.4E-16 117.1 10.7 86 127-214 30-116 (347)
150 4gt6_A Cell surface protein; l 99.1 3.4E-09 1.2E-13 103.9 21.2 299 35-387 74-389 (394)
151 4h09_A Hypothetical leucine ri 99.0 5.9E-08 2E-12 94.5 21.7 59 327-386 285-343 (379)
152 4h09_A Hypothetical leucine ri 98.8 4.2E-07 1.4E-11 88.4 20.1 58 328-386 263-320 (379)
153 2ra8_A Uncharacterized protein 98.8 2.4E-09 8.3E-14 102.9 3.8 55 98-160 171-227 (362)
154 2ra8_A Uncharacterized protein 98.8 9E-09 3.1E-13 99.0 7.7 58 172-233 168-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 2.9E-08 9.8E-13 86.1 2.7 91 147-238 60-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 6.6E-08 2.2E-12 88.2 3.1 63 98-166 169-234 (267)
157 1io0_A Tropomodulin; LRR prote 98.4 9.6E-08 3.3E-12 82.8 2.4 15 44-58 32-46 (185)
158 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.3E-12 84.8 3.6 41 150-191 168-210 (267)
159 3e4g_A ATP synthase subunit S, 97.8 6.5E-06 2.2E-10 69.6 2.8 83 129-211 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.8 5.7E-06 2E-10 69.9 1.8 84 152-236 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 6.6E-05 2.2E-09 64.7 3.5 82 128-210 41-135 (197)
162 3rfe_A Platelet glycoprotein I 97.2 0.00061 2.1E-08 54.7 6.0 44 39-85 24-67 (130)
163 3rfe_A Platelet glycoprotein I 97.1 0.0007 2.4E-08 54.3 5.6 54 332-387 12-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00052 1.8E-08 59.0 3.9 10 48-57 41-50 (197)
165 2lz0_A Uncharacterized protein 65.4 14 0.0005 27.2 5.9 47 188-235 7-53 (100)
166 2klu_A T-cell surface glycopro 55.3 5.4 0.00019 26.5 1.6 6 462-467 31-36 (70)
167 2lz0_A Uncharacterized protein 53.1 13 0.00046 27.4 3.8 36 43-79 15-50 (100)
168 2k1k_A Ephrin type-A receptor 48.5 8.2 0.00028 22.8 1.5 12 446-457 13-24 (38)
169 2knc_B Integrin beta-3; transm 24.9 37 0.0013 23.8 2.0 7 444-450 16-22 (79)
170 2l9u_A Receptor tyrosine-prote 21.8 50 0.0017 18.7 1.7 12 448-459 11-22 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-50 Score=427.89 Aligned_cols=425 Identities=30% Similarity=0.448 Sum_probs=326.5
Q ss_pred ccccCcccceeeeehhccC----CChhhhhhc-cCCcccccCCcCCCCC-CCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 4 CLCSELTRLTILLFYLMTS----DSPFLDRLQ-RLSDFSGQIPPSLGNL-NQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~----~~~~l~~L~-~~n~~~~~~p~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
..|.+|++++++.+.+... ..+.++.|+ ++|.+++.+|..+... ++|++|++++|++.+.+|..|+.+++|++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 3455666666665553322 224455555 6677777777777664 788888888888777778888888888888
Q ss_pred ccCCCCcccccCCch-hccccCCCCcEEEccCCCCC-CCCC-C---C-CC-------------CCcccc---cCccCeee
Q 048443 78 DTFPPMKIHGNIPKW-LLNPSMKNFSYLNLSKNYFP-RFDQ-H---P-TV-------------LPWTTL---STKIRHYL 134 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~-~~~~~l~~L~~L~Ls~N~l~-~~~~-l---~-~l-------------~p~~~~---~~~L~~L~ 134 (486)
+++ +|.+.+.+|.. +.. +++|++|++++|.++ .+|. + . .+ +|..+. +++|++|+
T Consensus 324 ~L~-~n~l~~~ip~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 324 ALS-SNNFSGELPMDTLLK--MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp ECC-SSEEEEECCHHHHTT--CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred ECC-CCcccCcCCHHHHhc--CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 888 78877777765 666 778888888887775 3332 1 0 11 222222 46788888
Q ss_pred cccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccc
Q 048443 135 ISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 135 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
+++|++++.+|..+..+++|++|++++|.+++..|..+..++. |+.|++++|.+.+.+|..+..+++|++|++++|.++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 8888888888888889999999999999998888888988887 999999999999888988999999999999999999
Q ss_pred cccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccc
Q 048443 215 GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLS 294 (486)
Q Consensus 215 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~ 294 (486)
+.+|.++..+++|++|++++|++.+..|.+++.+++|+.|++++|. +.+.+|.. +..+++|+.+++++|........
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--FSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEEECCGG-GGGCTTCCEEECCSSEEESBCCG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc--ccCcCCHH-HcCCCCCCEEECCCCccCCcCCh
Confidence 8889999999999999999999998999999999999999999985 66777766 78889999999998854422222
Q ss_pred cccccccccc--CCCCcc-------------------------------------eEEeecCCCcc---ccCcccCcccE
Q 048443 295 SYFSFDFYRY--FPQNDY-------------------------------------SITMSNEGQMM---THDKIPDILKG 332 (486)
Q Consensus 295 ~~~~~~~~~~--~~~~~~-------------------------------------~l~~~~~~~~~---~~~~~~~~L~~ 332 (486)
.......... +..... .+++..+.... .....++.|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 1111000000 000000 00000011111 11223578999
Q ss_pred EEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCcc
Q 048443 333 IILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNL 401 (486)
Q Consensus 333 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l 401 (486)
||+++|++++.+|..++.+++|+.|+|++|+++|.+|..|+++++|++|||++|+ +++|++||+++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999 66899999999999
Q ss_pred ccCCCCCCCCCCCCCccccCCcCCCCCCCCCCCCC
Q 048443 402 TGPIPQANQFPTFGYSSFNGNSRLCGKPLPKECAS 436 (486)
Q Consensus 402 ~~~~p~~~~~~~~~~~~~~~np~~c~~~~~~~C~~ 436 (486)
+|.+|.+.+|.++...+|.|||.+||.|.. .|..
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence 999999999999999999999999999987 8976
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-45 Score=395.97 Aligned_cols=412 Identities=19% Similarity=0.203 Sum_probs=301.6
Q ss_pred ccCcccceeeeehhccC---C---Chhhhhhc-cCCcccccC-CcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 6 CSELTRLTILLFYLMTS---D---SPFLDRLQ-RLSDFSGQI-PPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~~---~---~~~l~~L~-~~n~~~~~~-p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
.+.++.++++.+.+... . .+.|+.|+ ++|...+.+ |.+|+++++|++|+|++|++.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35677888887764322 2 23444554 556566666 6778888888888888888877778888888888888
Q ss_pred ccCCCCcccccCCch--hccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccc------
Q 048443 78 DTFPPMKIHGNIPKW--LLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWI------ 148 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~--~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~------ 148 (486)
+|+ +|.+++..|.. +.. +++|++|+|++|.++.++ .+..+. +++|++|++++|.+++..+..+
T Consensus 103 ~Ls-~n~l~~~~~~~~~~~~--L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 103 RLY-FCGLSDAVLKDGYFRN--LKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp ECT-TCCCSSCCSTTCCCSS--CSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred eCc-CCCCCcccccCccccc--cCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 888 78887755554 666 888888888888777652 122333 5666666666665554444333
Q ss_pred --------------------cCCCC------CCEEECcCCcCcccccchhhhc---------------------------
Q 048443 149 --------------------CNLSS------LYVLDLSDNNLSGELLQCLGNF--------------------------- 175 (486)
Q Consensus 149 --------------------~~l~~------L~~L~Ls~N~i~~~~~~~l~~~--------------------------- 175 (486)
..+++ |+.|++++|.+++..+..+...
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 33333 7788888777665554444321
Q ss_pred ----------CCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccc
Q 048443 176 ----------SGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWL 245 (486)
Q Consensus 176 ----------~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 245 (486)
..+|+.|++++|.+.+..+..|..+++|+.|++++|.+++..|.+|..+++|++|++++|.+.+..|..|
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 1238899999999988888889999999999999999998888889999999999999999988888899
Q ss_pred cCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcc-----cccccccccccccc----------------
Q 048443 246 GSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYME-----NFLSSYFSFDFYRY---------------- 304 (486)
Q Consensus 246 ~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~-----~~~~~~~~~~~~~~---------------- 304 (486)
..+++|+.|++++| .+..++...|..+++|+.+++++|.... ......+..+.+..
T Consensus 335 ~~l~~L~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 335 YGLPKVAYIDLQKN---HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411 (844)
T ss_dssp SSCTTCCEEECCSC---CCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred cCCCCCCEEECCCC---CCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccC
Confidence 99999999999998 5677777778889999999988874321 01111111111111
Q ss_pred ------------CCCCcceEEeecCCCcccc----CcccCcccEEEccccccc-----ccCccchhccCCCCeeeCCCcc
Q 048443 305 ------------FPQNDYSITMSNEGQMMTH----DKIPDILKGIILSSNRFD-----GEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 305 ------------~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
--+.+..++++++.+.... ...+++|+.|++++|.++ +..+..|..+++|++|+|++|+
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 1245666777777665322 223577888888888876 3445668899999999999999
Q ss_pred cCccCchhccCCCCCCEEeCCCCCC---------CCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCCC
Q 048443 364 LQGHIPSCLGSLTNLESLDLSKNRL---------TFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPL 430 (486)
Q Consensus 364 l~~~~~~~~~~l~~L~~L~Ls~N~l---------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~~ 430 (486)
+++.+|..|.++++|++|+|++|++ ++|+.|++++|++++..|.. +..+..+++.+||+.|+|+.
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 9999999999999999999999995 47899999999999988864 66888899999999998764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-43 Score=368.45 Aligned_cols=421 Identities=17% Similarity=0.148 Sum_probs=262.2
Q ss_pred CCcccccCcccceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
+..|.|........|..... ...++.++.|+ ++|.+++..|.+|+++++|++|+|++|++.+..|.+|.++++|+
T Consensus 5 ~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (606)
T 3t6q_A 5 DQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84 (606)
T ss_dssp -CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccC
Confidence 35688865554444443322 33455677787 88889888888999999999999999999888899999999999
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCC--CCCC-----------------CCcccccCccCeeecc
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ--HPTV-----------------LPWTTLSTKIRHYLIS 136 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-----------------~p~~~~~~~L~~L~Ls 136 (486)
+|+++ +|.+++..|..+.. +++|++|++++|.++.++. +..+ .|..+.+++|++|+++
T Consensus 85 ~L~Ls-~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 85 TLVLT-ANPLIFMAETALSG--PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp EEECT-TCCCSEECTTTTSS--CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred eeeCC-CCcccccChhhhcc--cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 99999 99999888888888 9999999999998887522 1100 1222224445555555
Q ss_pred cCcccccCCccccCCCCCC--EEECcCCcCcccccchhhhc---------------------------------------
Q 048443 137 KNNLTGEIPSWICNLSSLY--VLDLSDNNLSGELLQCLGNF--------------------------------------- 175 (486)
Q Consensus 137 ~n~l~~~~~~~~~~l~~L~--~L~Ls~N~i~~~~~~~l~~~--------------------------------------- 175 (486)
+|.+++..+..|..+++|+ .|++++|.+++..|..+...
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred cCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 5555444444445555555 45555555443333222110
Q ss_pred ----------C-CCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCcc
Q 048443 176 ----------S-GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW 244 (486)
Q Consensus 176 ----------~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 244 (486)
. .+|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh
Confidence 0 01444555555555555555777788888888888887 67777888888888888888887777777
Q ss_pred ccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccc--c----------cccccccccc-----cC--
Q 048443 245 LGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENF--L----------SSYFSFDFYR-----YF-- 305 (486)
Q Consensus 245 ~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~--~----------~~~~~~~~~~-----~~-- 305 (486)
+..+++|+.|++++|. ..+.+|...+..+++|+.++++++...... . ...+..+... .+
T Consensus 321 ~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNT--KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GGGCTTCSEEECCSCS--SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhccCcCCEEECCCCC--cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 7778888888887764 445666666666666666666655332111 0 0000111000 00
Q ss_pred C-------------------------CCcceEEeecCCCccccC---cccCcccEEEccccccccc---CccchhccCCC
Q 048443 306 P-------------------------QNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFDGE---MPTSIANLKGL 354 (486)
Q Consensus 306 ~-------------------------~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~~---~~~~~~~l~~L 354 (486)
. +.+..++++++.+....+ ..+++|+.|++++|.+++. .+..+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 1 234444444444433221 2245566666666665541 22345666666
Q ss_pred CeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCC
Q 048443 355 QVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGN 422 (486)
Q Consensus 355 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n 422 (486)
++|++++|++++..|..|..+++|++|++++|+ ++.| +|++++|++++..|.. ..+..+..+++.+|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 666666666666666666666777777777766 3455 6777777777655543 33456677888999
Q ss_pred cCCCCC
Q 048443 423 SRLCGK 428 (486)
Q Consensus 423 p~~c~~ 428 (486)
|+.|+|
T Consensus 558 ~~~c~c 563 (606)
T 3t6q_A 558 PLDCTC 563 (606)
T ss_dssp CEECSG
T ss_pred CccccC
Confidence 999963
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-43 Score=378.39 Aligned_cols=404 Identities=28% Similarity=0.364 Sum_probs=266.2
Q ss_pred ccccCcccceeeeehhccCC-----Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 4 CLCSELTRLTILLFYLMTSD-----SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~~-----~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
..|.+|++++++.+.+.... .+.|+.|+ ++|.+++.+|..|+.+++|++|++++|++.+.+|.. .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 56788888888887754432 24455555 778888888888888888888888888887766654 67778888
Q ss_pred ccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc-ccCCCCCC
Q 048443 78 DTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW-ICNLSSLY 155 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 155 (486)
+++ +|.+++.+|..+... +++|++|++++|.++.. +|..+. +++|++|++++|++++.+|.. +..+++|+
T Consensus 275 ~L~-~n~l~~~ip~~~~~~-~~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 275 SLA-ENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYGA------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp ECC-SSEEEESCCCCSCTT-CTTCSEEECCSSEEEEC------CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ECc-CCccCCccCHHHHhh-cCcCCEEECcCCcCCCc------cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 887 777777777777662 37788888888777644 455555 677777777777776666654 66777777
Q ss_pred EEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccC--CCCccEEECcCCccccccCccCcCCCCCCEEEcc
Q 048443 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMN--GSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 233 (486)
+|++++|++++.+|..+..+..+|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 77777777766666666666522666666666555554444443 4445555555555554455555555555555555
Q ss_pred CCccccCCCccccCCCCCCEEEcCccCCCccccCChh-----------------------hhhccccccccccccchhcc
Q 048443 234 NNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK-----------------------YFQCWNAMKFANSSQLRYME 290 (486)
Q Consensus 234 ~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~-----------------------~~~~l~~L~~l~~~~~~~~~ 290 (486)
+|.+.+..|..+..+++|+.|++++|. +.+.+|.. .+..+++|+.+++++|....
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNM--LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCc--ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 555554445555555555555554442 33333332 14444445555544442211
Q ss_pred ccccccccccccccCCCCcceEEeecCCCccccCc---ccCcccEEEcccccccccCccch-------------------
Q 048443 291 NFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK---IPDILKGIILSSNRFDGEMPTSI------------------- 348 (486)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~------------------- 348 (486)
.....+ . --+.+..++++++.+....+. .+++|+.|++++|.+++.+|..+
T Consensus 505 ~~p~~~------~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 505 EIPKWI------G-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CCCGGG------G-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCChHH------h-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 111000 0 114567788888877654433 36778888888888876666543
Q ss_pred ---------------------------------------------------hccCCCCeeeCCCcccCccCchhccCCCC
Q 048443 349 ---------------------------------------------------ANLKGLQVLGLASNNLQGHIPSCLGSLTN 377 (486)
Q Consensus 349 ---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 377 (486)
..+++|++|+|++|+++|.+|..|+.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 33567889999999999999999999999
Q ss_pred CCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCCcCCC
Q 048443 378 LESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 378 L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~np~~c 426 (486)
|+.|+|++|+ +++|++||+++|+++|.+|.. ..+..+..+++.+|+...
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 9999999998 568999999999999999976 456777888888887543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-41 Score=355.89 Aligned_cols=392 Identities=17% Similarity=0.169 Sum_probs=277.6
Q ss_pred CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCC
Q 048443 22 SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100 (486)
Q Consensus 22 ~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~ 100 (486)
..++.++.|+ ++|.+++..|.+|+++++|++|++++|++.+..|.+|.++++|++|+++ +|.+++..|.+|.+ +++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~--l~~ 105 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSG--LTS 105 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTT--CTT
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCC--ccc
Confidence 3456778887 8899999888899999999999999999999989999999999999999 99999988999999 999
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCC
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGG 178 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~ 178 (486)
|++|++++|.++.++ +..+. +++|++|++++|.+++ .+|..|.++++|++|++++|++++..+..++.+..
T Consensus 106 L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~- 178 (606)
T 3vq2_A 106 LENLVAVETKLASLE------SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE- 178 (606)
T ss_dssp CCEEECTTSCCCCSS------SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH-
T ss_pred CCEEEccCCcccccc------ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc-
Confidence 999999999998874 23455 8999999999999986 56889999999999999999998777766665543
Q ss_pred Cc----EEEccCccccccCCcccc--------------------------------------------------------
Q 048443 179 LS----VLSLQGKNFFGTTPDTFM-------------------------------------------------------- 198 (486)
Q Consensus 179 L~----~L~L~~n~i~~~~~~~~~-------------------------------------------------------- 198 (486)
|+ +|++++|.+.+..+..+.
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 33 566666665544333322
Q ss_pred ----------------------------------------------CCCCccEEECcCCccccccCccCcCCCCCCEEEc
Q 048443 199 ----------------------------------------------NGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL 232 (486)
Q Consensus 199 ----------------------------------------------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 232 (486)
.+++|++|++++|.++ .+| .+ .+++|++|++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccc-cC-CCCccceeec
Confidence 2223333333333331 233 12 3333333333
Q ss_pred cCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccc---------ccccccccccc
Q 048443 233 RNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENF---------LSSYFSFDFYR 303 (486)
Q Consensus 233 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~---------~~~~~~~~~~~ 303 (486)
++|...+ +..+..+++|+.|++++|.-...+.+|. .+..+++|+.++++++...... ....+..+...
T Consensus 336 ~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 336 TMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp ESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEE
T ss_pred cCCcCcc--chhhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccC
Confidence 3332211 1134456677777777652111111233 2556666666666655321100 00011111110
Q ss_pred --------cCCCCcceEEeecCCCccccC---cccCcccEEEcccccccc-cCccchhccCCCCeeeCCCcccCccCchh
Q 048443 304 --------YFPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFDG-EMPTSIANLKGLQVLGLASNNLQGHIPSC 371 (486)
Q Consensus 304 --------~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 371 (486)
.-.+.+..++++.+.+....+ ..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 112467788888888766443 346889999999999987 47888999999999999999999888999
Q ss_pred ccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCC-CCCCccccCCcCCCCCCC
Q 048443 372 LGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFP-TFGYSSFNGNSRLCGKPL 430 (486)
Q Consensus 372 ~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~np~~c~~~~ 430 (486)
|..+++|++|++++|+ +++|++|++++|+++ .+|.. ..+. .+..+++.+||+.|+|+.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999998 568999999999998 45554 3343 478889999999997553
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.7e-42 Score=358.84 Aligned_cols=351 Identities=17% Similarity=0.227 Sum_probs=292.2
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCC-----------------Cccccc--CCCCCCeeccCCCCcccccCCchh
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRE-----------------LPASIG--SLSSLERLDTFPPMKIHGNIPKWL 93 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~-----------------~~~~~~--~l~~L~~L~L~~~n~i~~~~p~~~ 93 (486)
.|+++| +|++|+++++|++|+|++|++.+. +|..++ ++++|++|+++ +|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~-~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY-NCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-CCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec-CCcCCccChHHH
Confidence 578889 999999999999999999999886 899998 99999999999 999999999999
Q ss_pred ccccCCCCcEEEccCCC-CCC-CCCCCCCCCcccc-c------CccCeeecccCcccccCCc--cccCCCCCCEEECcCC
Q 048443 94 LNPSMKNFSYLNLSKNY-FPR-FDQHPTVLPWTTL-S------TKIRHYLISKNNLTGEIPS--WICNLSSLYVLDLSDN 162 (486)
Q Consensus 94 ~~~~l~~L~~L~Ls~N~-l~~-~~~l~~l~p~~~~-~------~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N 162 (486)
.+ +++|++|++++|+ ++. . +|..++ + ++|++|++++|+++ .+|. .+..+++|++|++++|
T Consensus 270 ~~--l~~L~~L~Ls~n~~l~~~~------lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 270 KA--LPEMQLINVACNRGISGEQ------LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp TT--CSSCCEEECTTCTTSCHHH------HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred hc--CCCCCEEECcCCCCCcccc------chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 99 9999999999998 874 2 444554 4 89999999999999 8888 8999999999999999
Q ss_pred cCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC-ccEEECcCCccccccCccCcCCC--CCCEEEccCCcccc
Q 048443 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD-LRMVDLSHNLLQGKIPKSLANCA--VLEISDLRNNQIND 239 (486)
Q Consensus 163 ~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~ 239 (486)
+++|.+| .+..++. |++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+
T Consensus 341 ~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 341 QLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 9998898 8888887 999999999998 77888999999 999999999999 7888887755 89999999999999
Q ss_pred CCCcccc-------CCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceE
Q 048443 240 TFPIWLG-------SLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSI 312 (486)
Q Consensus 240 ~~~~~~~-------~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (486)
..|..+. .+++|+.|++++| ....+|...+..+++|+.+++++|... ......... ..
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N---~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~-----~~------ 481 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNN---QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD-----EN------ 481 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSS---CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE-----TT------
T ss_pred cchhhhcccccccccCCCCCEEECcCC---ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc-----cc------
Confidence 9998888 8889999999998 566899999999999999999988432 111100000 00
Q ss_pred EeecCCCccccCcccCcccEEEcccccccccCccchh--ccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCC-----
Q 048443 313 TMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIA--NLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK----- 385 (486)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~----- 385 (486)
.....+++|+.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|++++
T Consensus 482 ---------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 482 ---------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp ---------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred ---------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 00011236888888888888 6777776 78888888888888885 777788888888888854
Q ss_pred -CC-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCC
Q 048443 386 -NR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 386 -N~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c 426 (486)
|+ +++|++|++++|++ +.+|.. .+..+..+++.+||+.|
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 33 56788888888888 567765 33677888888888887
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-40 Score=353.58 Aligned_cols=421 Identities=19% Similarity=0.143 Sum_probs=226.1
Q ss_pred cccccCcccceeeeehhccCCC------hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 3 RCLCSELTRLTILLFYLMTSDS------PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~~~~------~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
+..|.+|++++++.+.+....+ +.|+.|+ ++|.+++..+.+|+++++|++|++++|++.+..|..|+++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 3455666666666655433322 2233333 55666654444566777777777777776666666666777777
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCC--C------------------CCCCCcccc-c-------
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ--H------------------PTVLPWTTL-S------- 127 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~--l------------------~~l~p~~~~-~------- 127 (486)
+|+++ +|.+++..|..+.. +++|++|++++|.++.++. + ....|..+. +
T Consensus 125 ~L~Ls-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 125 TLDLS-HNGLSSTKLGTQVQ--LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp EEECC-SSCCSCCCCCSSSC--CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred EEECC-CCcccccCchhhcc--cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 77776 66666666666666 6666666666666654321 0 000111100 0
Q ss_pred --------------------CccCeeecccCcccccCCccccCCCC--CCEEECcCCcCcccccchhhhcCCCCcEEEcc
Q 048443 128 --------------------TKIRHYLISKNNLTGEIPSWICNLSS--LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 128 --------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~ 185 (486)
++|++|++++|.+++..|..|.+++. |++|++++|++++..|..+..++. |++|+++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~ 280 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEYFFLE 280 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT-CCEEECC
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc-ccEeeCC
Confidence 22333333333333333333333322 555555555554444444444444 5555555
Q ss_pred CccccccCCccccCCCCccEEECcCCcccc-----ccCc----cCcCCCCCCEEEccCCccccCCCccccCCCCCC----
Q 048443 186 GKNFFGTTPDTFMNGSDLRMVDLSHNLLQG-----KIPK----SLANCAVLEISDLRNNQINDTFPIWLGSLLELN---- 252 (486)
Q Consensus 186 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---- 252 (486)
+|.+.+..+..|.++++|++|++++|...+ .+|. .|..+++|++|++++|.+.+..+..|..+++|+
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 555544444333333333333333222110 0111 233344444444444444444444444444444
Q ss_pred ------------------------------------------------EEEcCccCCCccccCChhhhhccccccccccc
Q 048443 253 ------------------------------------------------ILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 253 ------------------------------------------------~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
.|++++|. ..+.+|...|..+++|+.++++
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE--IGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CEEECCSGGGTTCTTCCEEECC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc--CccccCcccccCcccccEEecC
Confidence 44444432 2333444445555555555555
Q ss_pred cchhcccccccc----------cccccc---cc------CCCCcceEEeecCCCccccC---cccCcccEEEcccccccc
Q 048443 285 QLRYMENFLSSY----------FSFDFY---RY------FPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFDG 342 (486)
Q Consensus 285 ~~~~~~~~~~~~----------~~~~~~---~~------~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~ 342 (486)
+|.........+ +..+.. .. -.+.+..++++++.+..... ..+++|+.|++++|.+++
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 443211000000 000000 00 11456677777776655433 236778888888888875
Q ss_pred cCc--------cchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCcccc
Q 048443 343 EMP--------TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTG 403 (486)
Q Consensus 343 ~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~ 403 (486)
..+ ..+.++++|++|+|++|+++...+..|.++++|++|++++|+ +++|++|++++|++++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 321 236778888888888888885555678888999999998887 4678899999999987
Q ss_pred CCCCCC--CCCCCCCccccCCcCCCCCC
Q 048443 404 PIPQAN--QFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 404 ~~p~~~--~~~~~~~~~~~~np~~c~~~ 429 (486)
..|... .+..+..+++.+|||.|+|+
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cChhHhcccccccCEEEccCCCcccCCc
Confidence 666432 46778888999999999854
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=338.94 Aligned_cols=404 Identities=17% Similarity=0.133 Sum_probs=291.4
Q ss_pred cccccCcccceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCee
Q 048443 3 RCLCSELTRLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERL 77 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 77 (486)
.|.|..-.....|..... ...++.++.|+ ++|.+++..+.+|.++++|++|+|++|++.+..+..|.++++|++|
T Consensus 2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence 576655444455544323 23445678887 8899999889999999999999999999998888999999999999
Q ss_pred ccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc-cCCccccCCCCCC
Q 048443 78 DTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG-EIPSWICNLSSLY 155 (486)
Q Consensus 78 ~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 155 (486)
+++ +|.+++..|..|.. +++|++|++++|.++.++. ..+. +++|++|++++|.+++ .+|..|.++++|+
T Consensus 82 ~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 82 ILT-GNPIQSLALGAFSG--LSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp ECT-TCCCCEECTTTTTT--CTTCCEEECTTSCCCCSTT------CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred eCc-CCcCCccCHhhhcC--ccccccccccccccccCCC------ccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 999 99999988899999 9999999999999998743 2344 8999999999999986 4689999999999
Q ss_pred EEECcCCcCcccccchhhhcCCCC----cEEEccCccccccCCccccC--------------------------------
Q 048443 156 VLDLSDNNLSGELLQCLGNFSGGL----SVLSLQGKNFFGTTPDTFMN-------------------------------- 199 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~~l~~~~~~L----~~L~L~~n~i~~~~~~~~~~-------------------------------- 199 (486)
+|++++|++++..+..++.+.. | +.+++++|.+.+..+..|..
T Consensus 153 ~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 153 HLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp EEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred EEeCcCCccceecHHHccchhc-cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceee
Confidence 9999999999777777877776 7 78888888877665554443
Q ss_pred -------------------------------------------------CCCccEEECcCCccccccCccCcCCCCCCEE
Q 048443 200 -------------------------------------------------GSDLRMVDLSHNLLQGKIPKSLANCAVLEIS 230 (486)
Q Consensus 200 -------------------------------------------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 230 (486)
+++|++|++++|.++ .+|..+..+ +|++|
T Consensus 232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L 309 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHL 309 (570)
T ss_dssp EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEE
T ss_pred eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEE
Confidence 344444444444444 334444444 44444
Q ss_pred EccCCccccCCCcc-c-------------------cCCCCCCEEEcCccCCCccccCC--hhhhhccccccccccccchh
Q 048443 231 DLRNNQINDTFPIW-L-------------------GSLLELNILVLIQQLPCFMGKLP--SKYFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 231 ~L~~N~l~~~~~~~-~-------------------~~l~~L~~L~l~~n~~~~~~~ip--~~~~~~l~~L~~l~~~~~~~ 288 (486)
++++|.+. ..|.. + ..+++|+.|++++|. ...++ ...+..+++|+.++++++..
T Consensus 310 ~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 310 ELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG---LSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp EEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC---CBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred eeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc---cCccccccccccccCccCEEECCCCcc
Confidence 44444443 12210 0 122333333333331 11110 11234444444444444422
Q ss_pred ccccccccccccccccCCCCcceEEeecCCCcccc----CcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH----DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
.... .. -.-.+.+..++++.+.+.... ...+++|+.|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 386 ~~~~-~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 457 (570)
T 2z63_A 386 ITMS-SN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457 (570)
T ss_dssp EEEE-EE-------EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred cccc-cc-------ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC
Confidence 1100 00 001245677888877665432 33478899999999999988899999999999999999999
Q ss_pred C-ccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCCcCCCCCCC
Q 048443 365 Q-GHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGNSRLCGKPL 430 (486)
Q Consensus 365 ~-~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~np~~c~~~~ 430 (486)
+ +.+|..+..+++|++|++++|+ +++|++|++++|++++..|.. ..+..+..+++.+||+.|+++.
T Consensus 458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8 5788999999999999999998 568999999999999877754 4677888899999999997553
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=356.14 Aligned_cols=393 Identities=20% Similarity=0.144 Sum_probs=292.9
Q ss_pred cccccCcccceeeeehhcc-------CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCccc--ccCCC
Q 048443 3 RCLCSELTRLTILLFYLMT-------SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPAS--IGSLS 72 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~-------~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~--~~~l~ 72 (486)
+..+.+|++|+++.+.... ...+.|+.|+ ++|.+.+..|.+|+++++|++|+|++|.+.+..|.. |..++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 4678899999999884332 2234566665 889999999999999999999999999998866655 89999
Q ss_pred CCCeeccCCCCcccccCC-chhccccCCCCcEEEccCCCCCCCCC----------CCCC----------CCcccc-cC--
Q 048443 73 SLERLDTFPPMKIHGNIP-KWLLNPSMKNFSYLNLSKNYFPRFDQ----------HPTV----------LPWTTL-ST-- 128 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p-~~~~~~~l~~L~~L~Ls~N~l~~~~~----------l~~l----------~p~~~~-~~-- 128 (486)
+|++|+++ +|.+++..+ ..+.+ +++|++|++++|.++.+.. +..+ .|..+. ++
T Consensus 124 ~L~~L~Ls-~N~l~~~~~~~~~~~--L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 124 ALTRLDLS-KNQIRSLYLHPSFGK--LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCCEEEEE-SCCCCCCCCCGGGGT--CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred CCCEEECC-CCcccccccchhHhh--CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 99999999 999987765 57888 9999999999999875421 1111 122111 22
Q ss_pred ----ccCeeecccCcccccCCccccC--------------------------------------CCCCCEEECcCCcCcc
Q 048443 129 ----KIRHYLISKNNLTGEIPSWICN--------------------------------------LSSLYVLDLSDNNLSG 166 (486)
Q Consensus 129 ----~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------l~~L~~L~Ls~N~i~~ 166 (486)
.|++|++++|.+++..+..+.. .++|+.|++++|.+.+
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 3788888888776554443321 2578888888888887
Q ss_pred cccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCcccc
Q 048443 167 ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLG 246 (486)
Q Consensus 167 ~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 246 (486)
..+..+..++. |+.|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|.
T Consensus 281 ~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 281 LNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp ECSCCSSSCCC-CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred cChhhhhcCCC-CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 77777888877 88888888888888888888888888888888888877788888888888888888888877777888
Q ss_pred CCCCCCEEEcCccCCCc----------------cccCCh---------------------hhhhccccccccccccchhc
Q 048443 247 SLLELNILVLIQQLPCF----------------MGKLPS---------------------KYFQCWNAMKFANSSQLRYM 289 (486)
Q Consensus 247 ~l~~L~~L~l~~n~~~~----------------~~~ip~---------------------~~~~~l~~L~~l~~~~~~~~ 289 (486)
.+++|+.|++++|.-.. ...+|. ..+..+++|+.+++++|...
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 88888888888763111 011111 01224455555555555321
Q ss_pred cccccccccccccccCCCCcceEEeecCCCcccc--------CcccCcccEEEcccccccccCccchhccCCCCeeeCCC
Q 048443 290 ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH--------DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLAS 361 (486)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 361 (486)
.. .........+.+..++++++.+.... ...+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus 440 ~~------~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 440 SC------SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp CC------CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred cc------ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 10 00000111356788999998875322 23468899999999999988888899999999999999
Q ss_pred cccCccCchhccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCCC
Q 048443 362 NNLQGHIPSCLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 362 N~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p~ 407 (486)
|++++..+..+. ++|++|++++|+ +.+|+.+++++|++.|.++.
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSC
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCccccccc
Confidence 999987777765 899999999999 44789999999999988764
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-39 Score=337.59 Aligned_cols=390 Identities=18% Similarity=0.097 Sum_probs=257.6
Q ss_pred cccccCcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 3 RCLCSELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
+..|.+|++++++.+.+... ..+.|+.|+ ++|.+.+..|.+|+++++|++|++++|++.+..+..|.++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 56678888888887764332 223455554 77888888888888888888888888887777677777788888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCC--------CC--CC-------------------------
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ--------HP--TV------------------------- 120 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~--------l~--~l------------------------- 120 (486)
+|+++ +|.+.+.....+.. +++|++|++++|.++.++. +. .+
T Consensus 133 ~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 133 SLYLG-SNHISSIKLPKGFP--TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp EEECC-SSCCCCCCCCTTCC--CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred EEECC-CCcccccCcccccC--CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 88887 77777654445555 6677777777776653211 11 00
Q ss_pred ------------------------------------------------------------CCcccc-cCccCeeecccCc
Q 048443 121 ------------------------------------------------------------LPWTTL-STKIRHYLISKNN 139 (486)
Q Consensus 121 ------------------------------------------------------------~p~~~~-~~~L~~L~Ls~n~ 139 (486)
.+..+. +++|++|++++|+
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 011122 4455555555555
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCc-cccCCCCccEEECcCCcccccc-
Q 048443 140 LTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD-TFMNGSDLRMVDLSHNLLQGKI- 217 (486)
Q Consensus 140 l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~~~- 217 (486)
++ .+|..+..+++|++|++++|.+++..|..+..++. |++|++++|.+.+.++. .+..+++|++|++++|.+++..
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 55 44555555555555555555555444555555554 55555555555533332 3555666666666666665443
Q ss_pred -CccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccccc
Q 048443 218 -PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSY 296 (486)
Q Consensus 218 -p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 296 (486)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|. ..+..|...+..+++|+.++++++.........
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 444 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR--LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL- 444 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC--EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT-
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc--CCCcccchhhhCcccCCEEECCCCccCCcCHHH-
Confidence 4556666666666666666665556666666666666666653 333444444666666666666665321110000
Q ss_pred ccccccccCCCCcceEEeecCCCccc------cCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch
Q 048443 297 FSFDFYRYFPQNDYSITMSNEGQMMT------HDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS 370 (486)
Q Consensus 297 ~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 370 (486)
. .-.+.+..++++++.+... ....+++|+.|++++|++++..|..|..+++|++|+|++|++++..|.
T Consensus 445 -----~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 445 -----F-DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp -----T-TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred -----H-hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 0 1135678999999987652 234478999999999999988899999999999999999999999999
Q ss_pred hccCCCCCCEEeCCCCCC-----------CCCCEEeccCCccccCCCC
Q 048443 371 CLGSLTNLESLDLSKNRL-----------TFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 371 ~~~~l~~L~~L~Ls~N~l-----------~~L~~L~ls~N~l~~~~p~ 407 (486)
.+..+++| +|++++|++ ++|+.+++++|+++|.++.
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999999 999999993 4789999999999987763
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.6e-40 Score=345.20 Aligned_cols=337 Identities=18% Similarity=0.201 Sum_probs=289.0
Q ss_pred hhhhhhc-cCCccccc-----------------CCcCCC--CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc
Q 048443 25 PFLDRLQ-RLSDFSGQ-----------------IPPSLG--NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK 84 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~-----------------~p~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~ 84 (486)
+.|+.|+ ++|.+++. +|+.++ ++++|++|+|++|++.+.+|..|+++++|++|+++ +|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA-CNR 284 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT-TCT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc-CCC
Confidence 3444554 88888886 999999 99999999999999999999999999999999999 998
Q ss_pred -ccc-cCCchhccccC------CCCcEEEccCCCCCCCCCCCCCCCc--ccc-cCccCeeecccCcccccCCccccCCCC
Q 048443 85 -IHG-NIPKWLLNPSM------KNFSYLNLSKNYFPRFDQHPTVLPW--TTL-STKIRHYLISKNNLTGEIPSWICNLSS 153 (486)
Q Consensus 85 -i~~-~~p~~~~~~~l------~~L~~L~Ls~N~l~~~~~l~~l~p~--~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 153 (486)
+++ .+|..+.. + ++|++|++++|.++. +|. .+. +++|++|++++|+++|.+| .|..+++
T Consensus 285 ~l~~~~lp~~~~~--L~~~~~l~~L~~L~L~~n~l~~-------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 285 GISGEQLKDDWQA--LADAPVGEKIQIIYIGYNNLKT-------FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp TSCHHHHHHHHHH--HHHSGGGGTCCEEECCSSCCSS-------CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred CCccccchHHHHh--hhccccCCCCCEEECCCCcCCc-------cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 998 89998887 6 999999999999996 555 566 8999999999999999999 8999999
Q ss_pred CCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC--CccEEECcCCccccccCccCc-------CC
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS--DLRMVDLSHNLLQGKIPKSLA-------NC 224 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l 224 (486)
|++|++++|+++ .+|..+..++.+|++|++++|.++ .+|..+...+ +|++|++++|.+++..|..+. .+
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999999999999 888888888755999999999998 6787777655 899999999999999998888 78
Q ss_pred CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccc-------cccccccccchhccccccccc
Q 048443 225 AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWN-------AMKFANSSQLRYMENFLSSYF 297 (486)
Q Consensus 225 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~-------~L~~l~~~~~~~~~~~~~~~~ 297 (486)
++|++|++++|.+.+..+..+..+++|+.|++++| ....+|...+.... +|+.+++++|... ...
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp---- 504 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGN---MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS---- 504 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS---CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC----
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC---CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC----
Confidence 89999999999999655566778999999999998 45588887766543 8888888877332 100
Q ss_pred cccccccCCCCcceEEeecCCCccccC-cccCcccEEEcccccccccCccchhccCCCCeeeC------CCcccCccCch
Q 048443 298 SFDFYRYFPQNDYSITMSNEGQMMTHD-KIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGL------ASNNLQGHIPS 370 (486)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~ 370 (486)
..+. ..+++|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|.
T Consensus 505 -----------------------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 505 -----------------------DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp -----------------------GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred -----------------------hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 0111 135789999999999996 8999999999999999 56888889999
Q ss_pred hccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCC
Q 048443 371 CLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 371 ~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p 406 (486)
.+..+++|++|++++|+ .++|++|++++|++...-+
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTTCEEEC
T ss_pred HHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCCccccH
Confidence 99999999999999999 3578999999999875443
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-39 Score=340.64 Aligned_cols=227 Identities=23% Similarity=0.191 Sum_probs=142.3
Q ss_pred Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCc
Q 048443 24 SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFS 102 (486)
Q Consensus 24 ~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~ 102 (486)
++.++.|+ ++|.+.+..+.+|+++++|++|++++|.+.+..|..|+++++|++|+++ +|.+++..+..|.. +++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~--l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFAF--CTNLT 100 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC-SSCCCCCCTTTTTT--CTTCS
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC-CCccCccChhhhcc--CCCCC
Confidence 34566666 6666766666667777777777777777777777777777777777777 77777555556666 77777
Q ss_pred EEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhh--cCC--
Q 048443 103 YLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGN--FSG-- 177 (486)
Q Consensus 103 ~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~--~~~-- 177 (486)
+|++++|.+++++ |..+. +++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. ...
T Consensus 101 ~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 101 ELHLMSNSIQKIK------NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp EEECCSSCCCCCC------SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred EEECCCCccCccC------hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 7777777776653 22333 555555555555555555555555555555555555554433333221 122
Q ss_pred ------------------------------------------------CCcEEEccCccccccCCccccCCC--CccEEE
Q 048443 178 ------------------------------------------------GLSVLSLQGKNFFGTTPDTFMNGS--DLRMVD 207 (486)
Q Consensus 178 ------------------------------------------------~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~ 207 (486)
+|+.|++++|.+.+..+..|..++ +|++|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 144444444555444455555443 377777
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+++|.+++..|.+|+.+++|++|++++|.+.+..|.++..+++|+.|+++++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 7777777666677777777888888877777776766777777777766653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-40 Score=339.25 Aligned_cols=388 Identities=18% Similarity=0.141 Sum_probs=261.8
Q ss_pred CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCC
Q 048443 23 DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101 (486)
Q Consensus 23 ~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L 101 (486)
.++.++.|+ ++|++++..|.+|+++++|++|++++|++.+..|.+|.++++|++|+++ +|.+++..|..+.. +++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~--l~~L 100 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGP--LSSL 100 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTT--CTTC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhcc--CCCC
Confidence 346778887 8888998888899999999999999999998888899999999999999 99999888888888 9999
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccC-CccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEI-PSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
++|++++|.++.++ .|..+. +++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..+.. |
T Consensus 101 ~~L~Ls~n~l~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L 174 (549)
T 2z81_A 101 KYLNLMGNPYQTLG-----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-I 174 (549)
T ss_dssp CEEECTTCCCSSSC-----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-E
T ss_pred cEEECCCCcccccc-----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc-C
Confidence 99999999988643 233444 788888888888743344 457888888888888888888777777776665 6
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCcccccc---------------------------C----ccCcCCCCCC
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI---------------------------P----KSLANCAVLE 228 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------p----~~~~~l~~L~ 228 (486)
++|++++|.+.......+..+++|++|++++|.+++.. + ..+..+++|+
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 66666666654332222334566666666666655421 1 1122334444
Q ss_pred EEEccCCccccCCC-----------------------------------ccccCCCCCCEEEcCccCCCccccCChhhhh
Q 048443 229 ISDLRNNQINDTFP-----------------------------------IWLGSLLELNILVLIQQLPCFMGKLPSKYFQ 273 (486)
Q Consensus 229 ~L~L~~N~l~~~~~-----------------------------------~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~ 273 (486)
.+++++|.+.+... ..+...++|+.|+++++ ....+|...+.
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n---~l~~ip~~~~~ 331 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS---KVFLVPCSFSQ 331 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS---CCCCCCHHHHH
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC---ccccCCHHHHh
Confidence 44444444432110 00112345666666665 45678888777
Q ss_pred ccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcccc-----CcccCcccEEEcccccccccCccch
Q 048443 274 CWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH-----DKIPDILKGIILSSNRFDGEMPTSI 348 (486)
Q Consensus 274 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~L~~L~Ls~N~l~~~~~~~~ 348 (486)
.+++|+.+++++|........... .. ...+.++.++++++.+.... ...+++|+.|++++|+++ .+|..+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~---~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 406 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSA---CK-GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHT---CT-TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC
T ss_pred cCccccEEEccCCccccccccchh---hh-hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh
Confidence 888888888888854321110000 00 11235567777777664321 334667777777777777 566666
Q ss_pred hccCCCCeeeCCCcccCccCchhc------------------cCCCCCCEEeCCCCC---------CCCCCEEeccCCcc
Q 048443 349 ANLKGLQVLGLASNNLQGHIPSCL------------------GSLTNLESLDLSKNR---------LTFLEFFNATHNNL 401 (486)
Q Consensus 349 ~~l~~L~~L~Ls~N~l~~~~~~~~------------------~~l~~L~~L~Ls~N~---------l~~L~~L~ls~N~l 401 (486)
..+++|++|++++|++++ +|..+ ..+++|++|++++|+ +++|++|++++|++
T Consensus 407 ~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQL 485 (549)
T ss_dssp CCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCC
T ss_pred cccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCcc
Confidence 677777777777777662 22221 256778888888887 45678888888888
Q ss_pred ccCCCCC-CCCCCCCCccccCCcCCCCC
Q 048443 402 TGPIPQA-NQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 402 ~~~~p~~-~~~~~~~~~~~~~np~~c~~ 428 (486)
++..|.. ..+..+..+++.+||+.|+|
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 8776653 45677788888999998863
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-39 Score=345.36 Aligned_cols=349 Identities=18% Similarity=0.224 Sum_probs=194.3
Q ss_pred CcccccCCcCCCCCCCCCEeeCcCCCCCC-----------------CCccccc--CCCCCCeeccCCCCcccccCCchhc
Q 048443 34 SDFSGQIPPSLGNLNQLQWLDLAFNNFLR-----------------ELPASIG--SLSSLERLDTFPPMKIHGNIPKWLL 94 (486)
Q Consensus 34 n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~-----------------~~~~~~~--~l~~L~~L~L~~~n~i~~~~p~~~~ 94 (486)
|++++ +|+.|+++++|++|+|++|++.+ .+|..++ ++++|++|+|+ +|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls-~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY-NCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-SCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc-CCCCCccChHHHh
Confidence 44444 56666666666666666666555 2555554 66666666666 6666666666666
Q ss_pred cccCCCCcEEEccCCC-CCC-CCCCCCCCCcccc--------cCccCeeecccCcccccCCc--cccCCCCCCEEECcCC
Q 048443 95 NPSMKNFSYLNLSKNY-FPR-FDQHPTVLPWTTL--------STKIRHYLISKNNLTGEIPS--WICNLSSLYVLDLSDN 162 (486)
Q Consensus 95 ~~~l~~L~~L~Ls~N~-l~~-~~~l~~l~p~~~~--------~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N 162 (486)
+ +++|++|++++|+ ++. . +|..+. +++|++|++++|+++ .+|. .|.++++|++|++++|
T Consensus 513 ~--L~~L~~L~Ls~N~~lsg~~------iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 513 D--LPELQSLNIACNRGISAAQ------LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp G--CSSCCEEECTTCTTSCHHH------HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS
T ss_pred C--CCCCCEEECcCCCCccccc------chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC
Confidence 6 6666666666665 543 1 222222 236666666666666 5555 5666666666666666
Q ss_pred cCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC-ccEEECcCCccccccCccCcCCCC--CCEEEccCCcccc
Q 048443 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD-LRMVDLSHNLLQGKIPKSLANCAV--LEISDLRNNQIND 239 (486)
Q Consensus 163 ~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~ 239 (486)
+++ .+| .+..++. |+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+
T Consensus 584 ~l~-~lp-~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 584 KVR-HLE-AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCC-BCC-CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred Ccc-cch-hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 665 455 5555554 666666666665 45555555665 666666666665 45555554433 6666666666655
Q ss_pred CCCccc---c--CCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEe
Q 048443 240 TFPIWL---G--SLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITM 314 (486)
Q Consensus 240 ~~~~~~---~--~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (486)
.+|... . .+++|+.|++++| ....+|...+..+++|+.+++++|... ......... ..+
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N---~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~-----~~~------- 722 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYN---EIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP-----KDG------- 722 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSS---CCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC-----TTS-------
T ss_pred ccccchhhhccccCCCcCEEEccCC---cCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc-----ccc-------
Confidence 444221 1 2335666666665 344566666666666666666665221 000000000 000
Q ss_pred ecCCCccccCcccCcccEEEcccccccccCccchh--ccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCC------C
Q 048443 315 SNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIA--NLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK------N 386 (486)
Q Consensus 315 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N 386 (486)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |
T Consensus 723 --------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 723 --------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp --------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred --------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 0000125666666666666 5565554 66666666666666664 566666666666666655 2
Q ss_pred C-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCC
Q 048443 387 R-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 387 ~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c 426 (486)
+ +++|+.|++++|++ +.+|.. ....+..+++.+|++..
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 2 44666666666666 556654 23455666666666543
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-38 Score=332.15 Aligned_cols=382 Identities=20% Similarity=0.097 Sum_probs=277.6
Q ss_pred cCcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
..+++++++.+.+... ..+.++.|+ ++|.+++..|.+|+++++|++|+|++|++.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4566777776663322 234455555 778888877888888888888888888888887888888888888888
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC---
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY--- 155 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--- 155 (486)
+ +|.+++..+..+.+ +++|++|++++|.++.+. +|..+. +++|++|++++|++++..+..|..+.+|+
T Consensus 112 ~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 112 V-ETKLASLESFPIGQ--LITLKKLNVAHNFIHSCK-----LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp T-TSCCCCSSSSCCTT--CTTCCEEECCSSCCCCCC-----CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred c-CCccccccccccCC--CCCCCEEeCCCCccccee-----chHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 8 88888777777777 888888888888887532 355555 77777777777777665554444333222
Q ss_pred -EEECcCCcCcccccc----------------------------------------------------------------
Q 048443 156 -VLDLSDNNLSGELLQ---------------------------------------------------------------- 170 (486)
Q Consensus 156 -~L~Ls~N~i~~~~~~---------------------------------------------------------------- 170 (486)
+|++++|.+++..+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 333333333311111
Q ss_pred --------------------------------------hhhhcCCCCcEEEccCccccccCC------------------
Q 048443 171 --------------------------------------CLGNFSGGLSVLSLQGKNFFGTTP------------------ 194 (486)
Q Consensus 171 --------------------------------------~l~~~~~~L~~L~L~~n~i~~~~~------------------ 194 (486)
.+..++. |+.|++++|.+ +.+|
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~-L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK-WQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCC-CSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhhhcccccc-CCEEEcccccC-cccccCCCCccceeeccCCcCc
Confidence 1122222 44444444444 2222
Q ss_pred --ccccCCCCccEEECcCCccccc--cCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 195 --DTFMNGSDLRMVDLSHNLLQGK--IPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 195 --~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|. ..+..|..
T Consensus 342 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~--l~~~~~~~ 418 (606)
T 3vq2_A 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST--LKRVTEFS 418 (606)
T ss_dssp EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE--EESTTTTT
T ss_pred cchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc--cCCccChh
Confidence 1355778899999999998865 37888999999999999999875 55889999999999999984 44444546
Q ss_pred hhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccc-c---CcccCcccEEEcccccccccCcc
Q 048443 271 YFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMT-H---DKIPDILKGIILSSNRFDGEMPT 346 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~~L~~L~Ls~N~l~~~~~~ 346 (486)
.+..+++|+.++++++.........+. -.+.+..++++++.+... . ...+++|+.|++++|++++..|.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFL-------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTT-------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhc-------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 788999999999999854321111111 124678888888877652 2 33478999999999999988899
Q ss_pred chhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCC----------C-CCCEEeccCCccccCCCCC
Q 048443 347 SIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL----------T-FLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 347 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----------~-~L~~L~ls~N~l~~~~p~~ 408 (486)
.+..+++|++|++++|++++..|..|..+++|++|++++|++ + +|+++++++|++.|.++..
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999999998899999999999999999993 3 5999999999999887753
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=326.14 Aligned_cols=327 Identities=20% Similarity=0.166 Sum_probs=199.4
Q ss_pred CCcccccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 1 EKRCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
|..|.|..-.....|...... .+|..+. ++++.|+|++|++.+..+..|.++++|++|+|+
T Consensus 4 p~~C~C~~~~~~v~c~~~~l~-----------------~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 64 (477)
T 2id5_A 4 PPRCECSAQDRAVLCHRKRFV-----------------AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64 (477)
T ss_dssp STTCEEETTTTEEECCSCCCS-----------------SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCeECCCCCEEEeCCCCcC-----------------cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECC
Confidence 778999764444444332121 2333332 356666666666666555666666666666666
Q ss_pred CCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEEC
Q 048443 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDL 159 (486)
Q Consensus 81 ~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 159 (486)
+|.+++..|..|.+ +++|++|+|++|.++.+|. ..+. +++|++|++++|++++..+..|..+++|++|++
T Consensus 65 -~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 65 -ENIVSAVEPGAFNN--LFNLRTLGLRSNRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp -TSCCCEECTTTTTT--CTTCCEEECCSSCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred -CCccCEeChhhhhC--CccCCEEECCCCcCCccCc------ccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 66666655666666 6666666666666665421 2233 566666666666666555556666666666666
Q ss_pred cCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 160 SDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 160 s~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
++|.+++..+..|..++. |++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 136 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp CCTTCCEECTTSSTTCTT-CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCccceeChhhccCCCC-CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 666666555555665555 6666666666655555556666666666666666665555556666666666666665555
Q ss_pred CCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCC
Q 048443 240 TFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319 (486)
Q Consensus 240 ~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 319 (486)
..|.......+|+.|++++| ....+|...+..+++|+.+++++|.... ..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-------------------------- 264 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHC---NLTAVPYLAVRHLVYLRFLNLSYNPIST-IE-------------------------- 264 (477)
T ss_dssp EECTTTTTTCCCSEEEEESS---CCCSCCHHHHTTCTTCCEEECCSSCCCE-EC--------------------------
T ss_pred ccCcccccCccccEEECcCC---cccccCHHHhcCccccCeeECCCCcCCc-cC--------------------------
Confidence 55554444556666666665 4445555555555555555554442110 00
Q ss_pred ccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 320 MMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 320 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
......+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus 265 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 265 -GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 0001124568888888888887778888888888888888888887777777888888888888877
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9e-39 Score=322.45 Aligned_cols=345 Identities=17% Similarity=0.104 Sum_probs=244.7
Q ss_pred CcccccCcccceeeeehhccC---CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCC-cccccCCCCCCe
Q 048443 2 KRCLCSELTRLTILLFYLMTS---DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLREL-PASIGSLSSLER 76 (486)
Q Consensus 2 ~~c~c~~l~~l~~~~~~~~~~---~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~ 76 (486)
..|.|.. +...|.....+. .++.++.|+ ++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++
T Consensus 6 ~~c~~~~--~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 6 SECSVIG--YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp -CCEEET--TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred ceeEEEc--cccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE
Confidence 3466643 233444332222 446788887 889999998999999999999999999987554 678999999999
Q ss_pred eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc-ccCCCCC
Q 048443 77 LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW-ICNLSSL 154 (486)
Q Consensus 77 L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L 154 (486)
|+++ +|.+++..|..+.+ +++|++|++++|.+++... .+..+. +++|++|++++|++++..|.. +.++++|
T Consensus 84 L~Ls-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 84 LKLD-YNQFLQLETGAFNG--LANLEVLTLTQCNLDGAVL----SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp EECT-TCTTCEECTTTTTT--CTTCCEEECTTSCCBTHHH----HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred EeCC-CCccCccChhhccC--cccCCEEeCCCCCCCcccc----CcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 9999 99999999999999 9999999999999975200 112244 899999999999999877776 8999999
Q ss_pred CEEECcCCcCcccccchhhhc--CCCCcEEEccCccccccCCccc--------cCCCCccEEECcCCccccccCccCcCC
Q 048443 155 YVLDLSDNNLSGELLQCLGNF--SGGLSVLSLQGKNFFGTTPDTF--------MNGSDLRMVDLSHNLLQGKIPKSLANC 224 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~~~l~~~--~~~L~~L~L~~n~i~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~p~~~~~l 224 (486)
++|++++|++++..+..+..+ .. |+.|++++|.+.+..+..+ ..+++|++|++++|.+++..|..+...
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCE-EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred cEEeCCCCcccccChhhhhcccccc-ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 999999999998888888776 44 9999999999987655443 356889999999999988777766543
Q ss_pred ---CCCCEEEccCCccccC----------CCccccC--CCCCCEEEcCccCCCccccCChhhhhccccccccccccchhc
Q 048443 225 ---AVLEISDLRNNQINDT----------FPIWLGS--LLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYM 289 (486)
Q Consensus 225 ---~~L~~L~L~~N~l~~~----------~~~~~~~--l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~ 289 (486)
++|+.|++++|.+.+. .+..+.. .++|+.|++++| ....++...+..+++|+.+++++|...
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS---KIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS---CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc---cccccchhhcccCCCCCEEECCCCccc
Confidence 7888999988865432 1222222 368899999887 333444444555555555555554221
Q ss_pred cccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCc
Q 048443 290 ENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIP 369 (486)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 369 (486)
... ......+++|+.|++++|.+++..|..+..+++|++|+|++|++++..|
T Consensus 313 ~~~----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 313 KID----------------------------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp EEC----------------------------TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ccC----------------------------hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 000 0001113456666666666665555666666666666666666665556
Q ss_pred hhccCCCCCCEEeCCCCC
Q 048443 370 SCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 370 ~~~~~l~~L~~L~Ls~N~ 387 (486)
..|..+++|++|++++|+
T Consensus 365 ~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hhccccccccEEECCCCc
Confidence 666666666666666555
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.8e-38 Score=329.70 Aligned_cols=406 Identities=17% Similarity=0.147 Sum_probs=300.9
Q ss_pred ccccCcccceeeeehhccC----CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeec
Q 048443 4 CLCSELTRLTILLFYLMTS----DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLD 78 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~----~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 78 (486)
|.|..-...+.|.....+. .|+.++.|+ ++|+|++..|.+|.++++|++|+|++|++.++.+.+|.++++|++|+
T Consensus 27 c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 27 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp SEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence 5554333444555443333 445788888 99999998889999999999999999999999899999999999999
Q ss_pred cCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc-cCCccccCCCCCCE
Q 048443 79 TFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG-EIPSWICNLSSLYV 156 (486)
Q Consensus 79 L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 156 (486)
|+ +|++++..+.+|.+ +++|++|++++|+++.+| +..+. +++|++|++++|.+++ ..|..+..+++|++
T Consensus 107 Ls-~N~l~~l~~~~f~~--L~~L~~L~Ls~N~l~~l~------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 107 LT-GNPIQSLALGAFSG--LSSLQKLVAVETNLASLE------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp CT-TCCCCEECGGGGTT--CTTCCEEECTTSCCCCST------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred cc-CCcCCCCCHHHhcC--CCCCCEEECCCCcCCCCC------hhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 99 99999888888998 999999999999999874 34455 8999999999999986 46788899999999
Q ss_pred EECcCCcCcccccchhhhcCC---CCcEEEccCccccccCC---------------------------------------
Q 048443 157 LDLSDNNLSGELLQCLGNFSG---GLSVLSLQGKNFFGTTP--------------------------------------- 194 (486)
Q Consensus 157 L~Ls~N~i~~~~~~~l~~~~~---~L~~L~L~~n~i~~~~~--------------------------------------- 194 (486)
|++++|++++..+..+..+.. ....++++.|.+....+
T Consensus 178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred hcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 999999998776666654332 12233443333221100
Q ss_pred ----------------------------------------------------------------ccccCCCCccEEECcC
Q 048443 195 ----------------------------------------------------------------DTFMNGSDLRMVDLSH 210 (486)
Q Consensus 195 ----------------------------------------------------------------~~~~~l~~L~~L~L~~ 210 (486)
..+....+++.|++.+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 337 (635)
T ss_dssp EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEES
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccc
Confidence 0122234566777777
Q ss_pred CccccccCc-------------------cCcCCCCCCEEEccCCcccc--CCCccccCCCCCCEEEcCccCCCccccCCh
Q 048443 211 NLLQGKIPK-------------------SLANCAVLEISDLRNNQIND--TFPIWLGSLLELNILVLIQQLPCFMGKLPS 269 (486)
Q Consensus 211 N~l~~~~p~-------------------~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~ 269 (486)
|.+....+. ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+ ....++.
T Consensus 338 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~---~~~~~~~ 414 (635)
T 4g8a_A 338 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSS 414 (635)
T ss_dssp CEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC---SEEEECS
T ss_pred ccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc---ccccccc
Confidence 665432221 23357889999999998853 45566778889999998876 2333333
Q ss_pred hhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccC---cccCcccEEEccccccc-ccCc
Q 048443 270 KYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFD-GEMP 345 (486)
Q Consensus 270 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~-~~~~ 345 (486)
. +..++.++.+++..+........... .--..+..++++.+.+..... ..++.++.|++++|.+. +..|
T Consensus 415 ~-~~~l~~L~~l~l~~~~~~~~~~~~~~------~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 415 N-FLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp C-CTTCTTCCEEECTTSEEESTTSSCTT------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred c-ccccccccchhhhhcccccccccccc------ccccccccccccccccccccccccccchhhhhhhhhhcccccccCc
Confidence 3 66778888888776643221111100 111344566777766654433 34688999999999854 4578
Q ss_pred cchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCCC-CC-C
Q 048443 346 TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQAN-QF-P 412 (486)
Q Consensus 346 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~~-~~-~ 412 (486)
..|..+++|++|+|++|++++..|..|.++++|++|+|++|+ +++|++|++++|++++..|... .+ .
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 889999999999999999999999999999999999999998 5689999999999999888763 33 5
Q ss_pred CCCCccccCCcCCCCC
Q 048443 413 TFGYSSFNGNSRLCGK 428 (486)
Q Consensus 413 ~~~~~~~~~np~~c~~ 428 (486)
++..+++.+|||.|+|
T Consensus 568 ~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 568 SLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCCEEECTTCCBCCSG
T ss_pred cCCEEEeeCCCCcccC
Confidence 6888899999999973
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.7e-39 Score=341.16 Aligned_cols=354 Identities=16% Similarity=0.147 Sum_probs=285.8
Q ss_pred hhhhc-cCCcccc-----------------cCCcCCC--CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc-c
Q 048443 27 LDRLQ-RLSDFSG-----------------QIPPSLG--NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK-I 85 (486)
Q Consensus 27 l~~L~-~~n~~~~-----------------~~p~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~-i 85 (486)
|+.|+ ++|.+++ .+|+.++ ++++|++|+|++|++.+.+|..|+++++|++|+++ +|+ +
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls-~N~~l 528 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA-CNRGI 528 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT-TCTTS
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc-CCCCc
Confidence 33444 8899998 4999988 99999999999999999999999999999999999 998 9
Q ss_pred cc-cCCchhccccCC-------CCcEEEccCCCCCCCCCCCCCCCc--ccc-cCccCeeecccCcccccCCccccCCCCC
Q 048443 86 HG-NIPKWLLNPSMK-------NFSYLNLSKNYFPRFDQHPTVLPW--TTL-STKIRHYLISKNNLTGEIPSWICNLSSL 154 (486)
Q Consensus 86 ~~-~~p~~~~~~~l~-------~L~~L~Ls~N~l~~~~~l~~l~p~--~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 154 (486)
++ .+|..+.. ++ +|++|++++|.++. +|. .+. +++|++|++++|+++ .+| .|..+++|
T Consensus 529 sg~~iP~~i~~--L~~~~~~l~~L~~L~Ls~N~L~~-------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 529 SAAQLKADWTR--LADDEDTGPKIQIFYMGYNNLEE-------FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp CHHHHHHHHHH--HHHCTTTTTTCCEEECCSSCCCB-------CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ccccchHHHHh--hhhcccccCCccEEEeeCCcCCc-------cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 88 88887766 55 99999999999996 556 566 899999999999999 888 89999999
Q ss_pred CEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC--ccEEECcCCccccccCccC---c--CCCCC
Q 048443 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD--LRMVDLSHNLLQGKIPKSL---A--NCAVL 227 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L 227 (486)
+.|++++|+++ .+|..+..++.+|+.|++++|.+. .+|..+..++. |+.|++++|.+++.+|... . .+++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 99999999999 888888888755999999999998 67887777654 9999999999987665422 2 34589
Q ss_pred CEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcc-------ccccccccccchhcccccccccccc
Q 048443 228 EISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCW-------NAMKFANSSQLRYMENFLSSYFSFD 300 (486)
Q Consensus 228 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l-------~~L~~l~~~~~~~~~~~~~~~~~~~ 300 (486)
++|++++|.+....+..+..+++|+.|++++| .+..+|...+... ++|+.+++++|... ..
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N---~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l-------- 743 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNN---LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL-------- 743 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSC---CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC--------
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCC---cCCccChHHhccccccccccCCccEEECCCCCCc-cc--------
Confidence 99999999999544444568999999999998 5558888766543 38888888877331 00
Q ss_pred ccccCCCCcceEEeecCCCccccC-cccCcccEEEcccccccccCccchhccCCCCeeeCCC------cccCccCchhcc
Q 048443 301 FYRYFPQNDYSITMSNEGQMMTHD-KIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLAS------NNLQGHIPSCLG 373 (486)
Q Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~ 373 (486)
...+. ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..|.
T Consensus 744 -------------------p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 744 -------------------SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp -------------------CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred -------------------hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 00111 135789999999999996 788899999999999976 888889999999
Q ss_pred CCCCCCEEeCCCCCC--------CCCCEEeccCCccccCCCCCC-CCCCCCCccccCCcCCC
Q 048443 374 SLTNLESLDLSKNRL--------TFLEFFNATHNNLTGPIPQAN-QFPTFGYSSFNGNSRLC 426 (486)
Q Consensus 374 ~l~~L~~L~Ls~N~l--------~~L~~L~ls~N~l~~~~p~~~-~~~~~~~~~~~~np~~c 426 (486)
.+++|++|+|++|++ ++|+.|++++|++....+... .........+.+|+..+
T Consensus 804 ~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp GCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred cCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 999999999999993 468999999999875544321 01112334455565544
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-37 Score=321.86 Aligned_cols=377 Identities=17% Similarity=0.149 Sum_probs=236.4
Q ss_pred cccccCcccceeeeehhc---cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeec
Q 048443 3 RCLCSELTRLTILLFYLM---TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLD 78 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~---~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 78 (486)
-|.|...++++++++.+. ...++.++.|+ ++|.+.+..|.+|+++++|++|+|++|++.+..|..|.++++|++|+
T Consensus 27 ~~~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 27 PFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 366666677777766533 22345667776 77778777777888888888888888888887788888888888888
Q ss_pred cCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC--C
Q 048443 79 TFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL--Y 155 (486)
Q Consensus 79 L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~ 155 (486)
++ +|.++. +|.. . +++|++|++++|++++++ +|..+. +++|++|++++|++++. .+..+++| +
T Consensus 107 Ls-~N~l~~-lp~~--~--l~~L~~L~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~ 172 (562)
T 3a79_B 107 VS-HNRLQN-ISCC--P--MASLRHLDLSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLS 172 (562)
T ss_dssp CT-TSCCCE-ECSC--C--CTTCSEEECCSSCCSBCC-----CCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEE
T ss_pred CC-CCcCCc-cCcc--c--cccCCEEECCCCCccccC-----chHhhcccCcccEEecCCCccccC---chhhhhhceee
Confidence 88 888873 5544 4 888888888888887754 345566 78888888888888742 34555555 8
Q ss_pred EEECcCCcC--cccccchhhhcC-------------------------CCCcEEEccCcc--------------------
Q 048443 156 VLDLSDNNL--SGELLQCLGNFS-------------------------GGLSVLSLQGKN-------------------- 188 (486)
Q Consensus 156 ~L~Ls~N~i--~~~~~~~l~~~~-------------------------~~L~~L~L~~n~-------------------- 188 (486)
+|++++|.+ ++..|..+..+. .+|+.+++++|.
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 888888887 555555554422 013333333331
Q ss_pred --------cccc----CCccccCCCCccEEECcCCccccccCccC-----cCC--------------------------C
Q 048443 189 --------FFGT----TPDTFMNGSDLRMVDLSHNLLQGKIPKSL-----ANC--------------------------A 225 (486)
Q Consensus 189 --------i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l--------------------------~ 225 (486)
+.+. .+. ....++|++|++++|.+++.+|..+ ..+ .
T Consensus 253 ~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEECHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEEecCCcCcHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 0000 000 0011255666666666655555443 222 2
Q ss_pred CCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccC
Q 048443 226 VLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYF 305 (486)
Q Consensus 226 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (486)
+|++|++++|.+.... ....+++|+.|++++|. +.+.+|. .+..+++|+.+++++|.... ...
T Consensus 332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~--l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~----------- 394 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV--FTDSVFQ-GCSTLKRLQTLILQRNGLKN-FFK----------- 394 (562)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC--CCTTTTT-TCCSCSSCCEEECCSSCCCB-TTH-----------
T ss_pred cceEEEccCCCccccc--CccCCCCceEEECCCCc--cccchhh-hhcccCCCCEEECCCCCcCC-ccc-----------
Confidence 3555555555543211 11567778888887773 3333443 35667777777776663210 000
Q ss_pred CCCcceEEeecCCCccccCcccCcccEEEcccccccccCcc-chhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCC
Q 048443 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPT-SIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS 384 (486)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 384 (486)
.......+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|+++
T Consensus 395 --------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~ 458 (562)
T 3a79_B 395 --------------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458 (562)
T ss_dssp --------------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECC
T ss_pred --------------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECC
Confidence 000012246788888888888863444 477788888888888888766665543 678888888
Q ss_pred CCC----------CCCCCEEeccCCccccCCCCC--CCCCCCCCccccCCcCCCCC
Q 048443 385 KNR----------LTFLEFFNATHNNLTGPIPQA--NQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 385 ~N~----------l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~~~~~~np~~c~~ 428 (486)
+|+ +++|++|++++|++++ +|.. ..+..+..+++.+||+.|+|
T Consensus 459 ~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 459 NNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 887 4577888888888884 5543 45677788899999999963
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=314.38 Aligned_cols=357 Identities=19% Similarity=0.168 Sum_probs=283.4
Q ss_pred ccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccC-CchhccccCCCCcEEEccCCCCCCCCC
Q 048443 38 GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNI-PKWLLNPSMKNFSYLNLSKNYFPRFDQ 116 (486)
Q Consensus 38 ~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~-p~~~~~~~l~~L~~L~Ls~N~l~~~~~ 116 (486)
..+|. +. ++|++|+|++|.+.+..|..|.++++|++|+++ +|.+.+.+ +..|.. +++|++|++++|.++.+
T Consensus 23 ~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~--l~~L~~L~Ls~n~l~~~-- 94 (455)
T 3v47_A 23 HQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE-QQTPGLVIRNNTFRG--LSSLIILKLDYNQFLQL-- 94 (455)
T ss_dssp SSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECC-CCSTTCEECTTTTTT--CTTCCEEECTTCTTCEE--
T ss_pred ccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECc-CCcccceECcccccc--cccCCEEeCCCCccCcc--
Confidence 34564 33 789999999999999889999999999999999 99887555 567888 99999999999999876
Q ss_pred CCCCCCcccc-cCccCeeecccCcccccCCcc--ccCCCCCCEEECcCCcCcccccch-hhhcCCCCcEEEccCcccccc
Q 048443 117 HPTVLPWTTL-STKIRHYLISKNNLTGEIPSW--ICNLSSLYVLDLSDNNLSGELLQC-LGNFSGGLSVLSLQGKNFFGT 192 (486)
Q Consensus 117 l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~i~~~~~~~-l~~~~~~L~~L~L~~n~i~~~ 192 (486)
.|..+. +++|++|++++|++++..+.. |..+++|++|++++|.+++..|.. +..++. |++|++++|.+.+.
T Consensus 95 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 95 ----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVKSI 169 (455)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBSCC
T ss_pred ----ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCccccc
Confidence 456666 899999999999998755444 899999999999999999877776 788887 99999999999998
Q ss_pred CCccccCC--CCccEEECcCCccccccCcc--------CcCCCCCCEEEccCCccccCCCccccCC---CCCCEEEcCcc
Q 048443 193 TPDTFMNG--SDLRMVDLSHNLLQGKIPKS--------LANCAVLEISDLRNNQINDTFPIWLGSL---LELNILVLIQQ 259 (486)
Q Consensus 193 ~~~~~~~l--~~L~~L~L~~N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~n 259 (486)
.+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+... ++|+.|+++++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 88888765 78999999999998654433 3366899999999999998888776554 88899998875
Q ss_pred CCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccC---cccCcccEEEcc
Q 048443 260 LPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD---KIPDILKGIILS 336 (486)
Q Consensus 260 ~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls 336 (486)
. ..+.... ...+..+.... +.....+.+..++++.+.+....+ ..+++|+.|+++
T Consensus 250 ~--~~~~~~~--~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 250 Y--NMGSSFG--HTNFKDPDNFT------------------FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp T--TTSCCTT--CCSSCCCCTTT------------------TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred c--ccccccc--hhhhccCcccc------------------cccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence 3 1111000 00000000000 000011345566666666654432 346889999999
Q ss_pred cccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCC
Q 048443 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPI 405 (486)
Q Consensus 337 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~ 405 (486)
+|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+ +++|++|++++|++++..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 999998889999999999999999999998889999999999999999998 578999999999999765
Q ss_pred CCC-CCCCCCCCccccCCcCCCCCC
Q 048443 406 PQA-NQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 406 p~~-~~~~~~~~~~~~~np~~c~~~ 429 (486)
+.. ..+..+..+++.+||+.|++|
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhHhccCCcccEEEccCCCcccCCC
Confidence 544 467788899999999999865
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=319.01 Aligned_cols=375 Identities=17% Similarity=0.134 Sum_probs=213.0
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|+ ++|.+.+..|.+|.++++|++|+|++|++.+..|..|+++++|++|+++ +|+++. +|.. . +++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~-lp~~--~--l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS-HNKLVK-ISCH--P--TVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC-SSCCCE-EECC--C--CCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC-CCceee-cCcc--c--cCCccE
Confidence 3445554 5555555555555555666666666665555555555556666666665 555553 3333 3 555666
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC--CEEECcCCcC--cccccchhhhcCC-
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL--YVLDLSDNNL--SGELLQCLGNFSG- 177 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~Ls~N~i--~~~~~~~l~~~~~- 177 (486)
|++++|.++.++ +|..+. +++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+..
T Consensus 95 L~L~~N~l~~~~-----~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 95 LDLSFNAFDALP-----ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp EECCSSCCSSCC-----CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred EeccCCcccccc-----chhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 666666555432 334444 5556666666665553 234445555 5666666555 4444444433220
Q ss_pred ------------------------CCcEEEccCcc-------ccccCCccccCCCCccEEECcCCccccccCccCc---C
Q 048443 178 ------------------------GLSVLSLQGKN-------FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLA---N 223 (486)
Q Consensus 178 ------------------------~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~ 223 (486)
+|+.+++++|. +.+.++ .+..+++|+.|++++|.+++..+..+. .
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence 02222222222 111111 122222222222222222211100000 0
Q ss_pred CCCCCEEEccCCccccCCCccc-----cCCCCCCEEEcCccCCCccccCChhh-------------------------hh
Q 048443 224 CAVLEISDLRNNQINDTFPIWL-----GSLLELNILVLIQQLPCFMGKLPSKY-------------------------FQ 273 (486)
Q Consensus 224 l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~ip~~~-------------------------~~ 273 (486)
.++|++|++++|.+.+..|.++ +.++.|+.++++.+. . .+|... +.
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~---~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV---F-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC---C-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccc---e-ecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 2355555555555555555555 555555555554442 1 333111 14
Q ss_pred ccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcc--c---cCcccCcccEEEcccccccccCcc-c
Q 048443 274 CWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMM--T---HDKIPDILKGIILSSNRFDGEMPT-S 347 (486)
Q Consensus 274 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~---~~~~~~~L~~L~Ls~N~l~~~~~~-~ 347 (486)
.+++|+.+++++|.........+ .-.+.++.++++.+.+.. . ....+++|+.|++++|.+++.+|. .
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~-------~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC-------GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC-------CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hCCcccEEEeECCccChhhhhhh-------ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 66778888888774322111111 112456788888887764 1 134578899999999999974665 4
Q ss_pred hhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCCC--CCCCCCC
Q 048443 348 IANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQA--NQFPTFG 415 (486)
Q Consensus 348 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~~--~~~~~~~ 415 (486)
+..+++|++|++++|++++..|..+. ++|++|++++|+ +++|++|++++|+++. +|.. ..+..+.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCccc
Confidence 88899999999999999887777664 799999999998 5688999999999994 5553 4566788
Q ss_pred CccccCCcCCCCC
Q 048443 416 YSSFNGNSRLCGK 428 (486)
Q Consensus 416 ~~~~~~np~~c~~ 428 (486)
.+.+.+||+.|+|
T Consensus 472 ~L~l~~N~~~c~c 484 (520)
T 2z7x_B 472 KIWLHTNPWDCSC 484 (520)
T ss_dssp EEECCSSCBCCCH
T ss_pred EEECcCCCCcccC
Confidence 8899999999963
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-37 Score=320.93 Aligned_cols=371 Identities=19% Similarity=0.206 Sum_probs=279.0
Q ss_pred CcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 8 ELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 8 ~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
.+++++++.+.+... ..+.++.|+ ++|.+.+..|.+|+.+++|++|++++|++.+..+..|+++++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 789999998874422 234566666 8899999999999999999999999999999888889999999999999
Q ss_pred CCCccccc-CCchhccccCCCCcEEEccCCC-CCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEE
Q 048443 81 PPMKIHGN-IPKWLLNPSMKNFSYLNLSKNY-FPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVL 157 (486)
Q Consensus 81 ~~n~i~~~-~p~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 157 (486)
+|.+++. .|..+.. +++|++|++++|. +..+| +..+. +++|++|++++|++++..|..+..+++|++|
T Consensus 107 -~n~l~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 107 -GNPYQTLGVTSLFPN--LTNLQTLRIGNVETFSEIR------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp -TCCCSSSCSSCSCTT--CTTCCEEEEEESSSCCEEC------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred -CCcccccchhhhhhc--cCCccEEECCCCccccccC------HhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 9999873 5778888 9999999999998 55542 23444 8899999999999998888888877777777
Q ss_pred ECcCCcCcccccchh-hhcCCCCcEEEccCccccccC--Ccc--------------------------------------
Q 048443 158 DLSDNNLSGELLQCL-GNFSGGLSVLSLQGKNFFGTT--PDT-------------------------------------- 196 (486)
Q Consensus 158 ~Ls~N~i~~~~~~~l-~~~~~~L~~L~L~~n~i~~~~--~~~-------------------------------------- 196 (486)
++++|.+. ..|..+ ..++. |++|++++|++.+.. +..
T Consensus 178 ~l~~n~~~-~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 178 TLHLSESA-FLLEIFADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEECSBST-THHHHHHHSTTT-BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred ecccCccc-ccchhhHhhccc-ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 77777665 334333 23443 666666666665421 000
Q ss_pred ---------------------c-----------------------------cCCCCccEEECcCCccccccCccC-cCCC
Q 048443 197 ---------------------F-----------------------------MNGSDLRMVDLSHNLLQGKIPKSL-ANCA 225 (486)
Q Consensus 197 ---------------------~-----------------------------~~l~~L~~L~L~~N~l~~~~p~~~-~~l~ 225 (486)
+ ...++|+.|++++|.++ .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 0 01134556666666665 455554 4688
Q ss_pred CCCEEEccCCccccCCC---ccccCCCCCCEEEcCccCCCccccCCh--hhhhccccccccccccchhcccccccccccc
Q 048443 226 VLEISDLRNNQINDTFP---IWLGSLLELNILVLIQQLPCFMGKLPS--KYFQCWNAMKFANSSQLRYMENFLSSYFSFD 300 (486)
Q Consensus 226 ~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~ip~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 300 (486)
+|++|++++|.+.+..| ..++.+++|+.|++++| ....+|. ..+..+++|+.+++++|... ....
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~------ 404 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN---HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD------ 404 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS---CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS------
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCC---cccccccchhhhhcCCCCCEEECCCCCCc-cCCh------
Confidence 89999999998887654 34678888999999887 4445543 45788889999999888432 1111
Q ss_pred ccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCE
Q 048443 301 FYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLES 380 (486)
Q Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 380 (486)
.....+.+..++++++.+.......++.|+.|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++
T Consensus 405 -~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 405 -SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV 477 (549)
T ss_dssp -CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred -hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence 1112356788999999887666666789999999999998542 57899999999999999 6665 467899999
Q ss_pred EeCCCCC-----------CCCCCEEeccCCccccCCCC
Q 048443 381 LDLSKNR-----------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 381 L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~ 407 (486)
|++++|+ +++|++|++++|+++|.+|.
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9999998 56789999999999998874
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=315.22 Aligned_cols=380 Identities=19% Similarity=0.146 Sum_probs=286.9
Q ss_pred cCcccceeeeehhccC------CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTS------DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~------~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
+.+++++++.+.+... ..+.++.|+ ++|.+.+..|..|+++++|++|+|++|++.+..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4577788877764322 234556665 777888877888888999999999999888888888888999999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC----
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL---- 154 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L---- 154 (486)
+ +|.+++..+..+.. +++|++|++++|.++.++ +|..+. +++|++|++++|++++..+..+..+++|
T Consensus 108 ~-~n~l~~l~~~~~~~--l~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 108 V-ETNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp T-TSCCCCSTTCSCTT--CTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred c-ccccccCCCccccc--cccccEEecCCCccceec-----ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 8 88888766666777 888999999988887643 455666 7888888888888876666667666666
Q ss_pred CEEECcCCcCccccc-----------------------------------------------------------------
Q 048443 155 YVLDLSDNNLSGELL----------------------------------------------------------------- 169 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~----------------------------------------------------------------- 169 (486)
+.|++++|.+++..+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 677777766553322
Q ss_pred ----------------chhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCcc-------------
Q 048443 170 ----------------QCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS------------- 220 (486)
Q Consensus 170 ----------------~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~------------- 220 (486)
..+..++. |+.|++++|.+.+ +|..+..+ +|++|++++|.+. .+|..
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESC
T ss_pred hhhhhhcchhhhhhchhhhcCcCc-ccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCC
Confidence 23334454 7778888777763 55556655 6666666666665 33321
Q ss_pred -------CcCCCCCCEEEccCCccccCC--CccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccc
Q 048443 221 -------LANCAVLEISDLRNNQINDTF--PIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMEN 291 (486)
Q Consensus 221 -------~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~ 291 (486)
...+++|++|++++|.+.+.. +..+..+++|+.|++++| ....+|.. +..+++|+.++++++.....
T Consensus 336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC---SEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred ccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC---cccccccc-ccccCCCCEEEccCCccccc
Confidence 156788999999999987654 677889999999999998 45556666 78899999999998743221
Q ss_pred cccccccccccccCCCCcceEEeecCCCccccC---cccCcccEEEccccccc-ccCccchhccCCCCeeeCCCcccCcc
Q 048443 292 FLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHD---KIPDILKGIILSSNRFD-GEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
..... ..-.+.+..++++.+.+....+ ..+++|+.|++++|.++ +.+|..+..+++|++|++++|++++.
T Consensus 412 ~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 412 SEFSV------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp TTSCT------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred cchhh------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 11000 0112467888888887765443 34789999999999998 57899999999999999999999988
Q ss_pred CchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~ 408 (486)
.|..|..+++|++|++++|+ +++|++|++++|+++|.+|..
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 89999999999999999998 568899999999999999864
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-37 Score=314.53 Aligned_cols=349 Identities=19% Similarity=0.172 Sum_probs=233.8
Q ss_pred cCcccceeeeehhccCC------Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTSD------SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~~------~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
.++++++++.+.+.... .+.|+.|+ ++|.+++..|.+|+++++|++|+|++|++.. +|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 67899999988755433 34555565 8899999989999999999999999999874 5555 8999999999
Q ss_pred CCCCcccc-cCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCcc--CeeecccCcc--cccCCccccC---
Q 048443 80 FPPMKIHG-NIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKI--RHYLISKNNL--TGEIPSWICN--- 150 (486)
Q Consensus 80 ~~~n~i~~-~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L--~~L~Ls~n~l--~~~~~~~~~~--- 150 (486)
+ +|.+++ .+|..+.. +++|++|++++|.++.. .+. +++| ++|++++|.+ ++..|..+..
T Consensus 98 ~-~N~l~~~~~p~~~~~--l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 98 S-FNAFDALPICKEFGN--MSQLKFLGLSTTHLEKS---------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp C-SSCCSSCCCCGGGGG--CTTCCEEEEEESSCCGG---------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred c-CCccccccchhhhcc--CCcceEEEecCcccchh---------hccccccceeeEEEeeccccccccccccccccccc
Confidence 9 999997 47899999 99999999999998752 233 6777 9999999999 5555555544
Q ss_pred -----------------------CCCCCEEECcCCc-------CcccccchhhhcCC-----------------------
Q 048443 151 -----------------------LSSLYVLDLSDNN-------LSGELLQCLGNFSG----------------------- 177 (486)
Q Consensus 151 -----------------------l~~L~~L~Ls~N~-------i~~~~~~~l~~~~~----------------------- 177 (486)
+++|+.|++++|. +.+.++ .+..++.
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHh
Confidence 4455555555553 221111 1222211
Q ss_pred ---CCcEEEccCccccccCCccc-----cCCCCccEEECcCCccccccC-cc-------------------------CcC
Q 048443 178 ---GLSVLSLQGKNFFGTTPDTF-----MNGSDLRMVDLSHNLLQGKIP-KS-------------------------LAN 223 (486)
Q Consensus 178 ---~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p-~~-------------------------~~~ 223 (486)
+|++|++++|++.+.+|..+ ..+++|+.+++++|.+ .+| .. +..
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 37788888888877777766 6666666666666665 222 11 145
Q ss_pred CCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCCh--hhhhccccccccccccchhccccccccccccc
Q 048443 224 CAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPS--KYFQCWNAMKFANSSQLRYMENFLSSYFSFDF 301 (486)
Q Consensus 224 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 301 (486)
+++|++|++++|.+++..|.+++.+++|+.|++++| ....++. ..+..+++|+.+++++|.........
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------ 393 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN---QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------ 393 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS---CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC------
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCC---ccCccccchHHHhhCCCCCEEECCCCcCCcccccc------
Confidence 666677777777766666666666777777777666 2332222 23556666666666665321101000
Q ss_pred cccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEE
Q 048443 302 YRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESL 381 (486)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 381 (486)
....++.|+.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|
T Consensus 394 ---------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 394 ---------------------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp ---------------------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred ---------------------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 012245677777777777665555443 56777777777777 566655577777777
Q ss_pred eCCCCC-----------CCCCCEEeccCCccccCCC
Q 048443 382 DLSKNR-----------LTFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 382 ~Ls~N~-----------l~~L~~L~ls~N~l~~~~p 406 (486)
++++|+ +++|++|++++|+++|.++
T Consensus 450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 777776 3456777778888877665
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=305.63 Aligned_cols=333 Identities=18% Similarity=0.138 Sum_probs=276.9
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
-+.++.+++++. .+|..+. +++++|+++ +|.+++..+..|.. +++|++|+|++|.++.+ .|..+. ++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~------~~~~~~~l~ 80 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLG-KNRIKTLNQDEFAS--FPHLEELELNENIVSAV------EPGAFNNLF 80 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECC-SSCCCEECTTTTTT--CTTCCEEECTTSCCCEE------CTTTTTTCT
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECC-CCccceECHhHccC--CCCCCEEECCCCccCEe------ChhhhhCCc
Confidence 357888888854 4565553 689999999 99999998999999 99999999999999886 455666 89
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|+|++|++++..+..|.++++|++|++++|++.+..+..|..+++ |++|++++|.+.+..+..|..+++|++|++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 9999999999999766677899999999999999999888888999997 999999999999999999999999999999
Q ss_pred cCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchh
Q 048443 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~ 288 (486)
++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|+++++. ..+.+|...+.. .+|+.++++++
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~-~~L~~L~l~~n-- 234 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP--YLDTMTPNCLYG-LNLTSLSITHC-- 234 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT--TCCEECTTTTTT-CCCSEEEEESS--
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc--cccccCcccccC-ccccEEECcCC--
Confidence 9999997666789999999999999999998888899999999999999864 566666654432 25555555544
Q ss_pred ccccccccccccccccCCCCcceEEeecCCCcccc---CcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccC
Q 048443 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH---DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 365 (486)
.+.... ...+++|+.|+|++|.+++..+..|..+++|++|+|++|+++
T Consensus 235 -----------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 235 -----------------------------NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp -----------------------------CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred -----------------------------cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 333222 223578999999999999888888999999999999999999
Q ss_pred ccCchhccCCCCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCC
Q 048443 366 GHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 366 ~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~ 429 (486)
+..|..|..+++|++|++++|+ +++|++|++++|++++.++....+.......+.++...|..|
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 8889999999999999999998 347889999999998766533222233345567777888654
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-35 Score=305.89 Aligned_cols=348 Identities=16% Similarity=0.152 Sum_probs=233.4
Q ss_pred cCcccceeeeehhccCC------Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTSD------SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~~------~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
.++++++++.+.+.... .+.|+.|+ ++|.+++..|.+|.++++|++|+|++|++.. +|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEEC
Confidence 67899999988854432 24555565 8899999999999999999999999999874 5555 8999999999
Q ss_pred CCCCccccc-CCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCcc--CeeecccCcc--cccCCccccC---
Q 048443 80 FPPMKIHGN-IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKI--RHYLISKNNL--TGEIPSWICN--- 150 (486)
Q Consensus 80 ~~~n~i~~~-~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L--~~L~Ls~n~l--~~~~~~~~~~--- 150 (486)
+ +|.+++. .|..+.+ +++|++|++++|.++.. .+. +++| ++|++++|.+ ++..|..+..
T Consensus 129 s-~N~l~~l~~p~~~~~--l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 129 S-FNDFDVLPVCKEFGN--LTKLTFLGLSAAKFRQL---------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp C-SSCCSBCCCCGGGGG--CTTCCEEEEECSBCCTT---------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred C-CCCccccCchHhhcc--cCcccEEecCCCccccC---------chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 9 9999974 5789999 99999999999998753 222 4556 9999999999 6666666554
Q ss_pred -----------------------CCCCCEEECcCCcC----------------------------ccc----ccchhhhc
Q 048443 151 -----------------------LSSLYVLDLSDNNL----------------------------SGE----LLQCLGNF 175 (486)
Q Consensus 151 -----------------------l~~L~~L~Ls~N~i----------------------------~~~----~~~~l~~~ 175 (486)
+++|+.|++++|+. ++. .+..+ ..
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~ 275 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WP 275 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TT
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hc
Confidence 34566666666531 100 00111 11
Q ss_pred CCCCcEEEccCccccccCCccc-----cCC--------------------------CCccEEECcCCccccccCccCcCC
Q 048443 176 SGGLSVLSLQGKNFFGTTPDTF-----MNG--------------------------SDLRMVDLSHNLLQGKIPKSLANC 224 (486)
Q Consensus 176 ~~~L~~L~L~~n~i~~~~~~~~-----~~l--------------------------~~L~~L~L~~N~l~~~~p~~~~~l 224 (486)
.. |++|++++|.+.+.+|..+ ..+ .+|++|++++|.+... + ....+
T Consensus 276 ~~-L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~~~~l 352 (562)
T 3a79_B 276 RP-VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM-V-CPPSP 352 (562)
T ss_dssp SS-EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSC
T ss_pred cc-ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc-c-CccCC
Confidence 23 8888888888887777655 222 2356666666665421 1 12678
Q ss_pred CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCCh--hhhhccccccccccccchhcccccccccccccc
Q 048443 225 AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPS--KYFQCWNAMKFANSSQLRYMENFLSSYFSFDFY 302 (486)
Q Consensus 225 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 302 (486)
++|++|++++|.+++..|.++..+++|+.|++++| ....++. ..+..+++|+.+++++|.........
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------- 422 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN---GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR------- 422 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS---CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-------
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCC---CcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-------
Confidence 88899999999888888888888889999998887 4555553 34677888888888877432101110
Q ss_pred ccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEe
Q 048443 303 RYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLD 382 (486)
Q Consensus 303 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 382 (486)
....+++|+.|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|+
T Consensus 423 --------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 423 --------------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479 (562)
T ss_dssp --------------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred --------------------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence 011134455666666655544444332 45566666666555 4444444555666666
Q ss_pred CCCCC-----------CCCCCEEeccCCccccCCC
Q 048443 383 LSKNR-----------LTFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 383 Ls~N~-----------l~~L~~L~ls~N~l~~~~p 406 (486)
+++|+ +++|++|++++|+++|.+|
T Consensus 480 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 66555 2345566666777776655
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-34 Score=286.27 Aligned_cols=324 Identities=19% Similarity=0.152 Sum_probs=221.6
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|+ +++.+....+..|..+++|++|++++|.+.+..+..|..+++|++|+++ +|.+++..|..+.. +++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQN--VPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTT--CTTCCE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcC--CCCCCE
Confidence 4455555 5555554444446788888888888888887777788888888888888 88888887888888 888888
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEE
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L 182 (486)
|++++|.++.+|. ..+. +++|++|++++|++++..+..|..+++|++|++++|++++. .+..++. |+.|
T Consensus 122 L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~-L~~L 191 (390)
T 3o6n_A 122 LVLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS-LFHA 191 (390)
T ss_dssp EECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT-CSEE
T ss_pred EECCCCccCcCCH------HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc-ccee
Confidence 8888888887532 2234 78888888888888877777788888888888888888753 2455665 8888
Q ss_pred EccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCC
Q 048443 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPC 262 (486)
Q Consensus 183 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~ 262 (486)
++++|.+.+. ...++|++|++++|.++.. |.. ..++|++|++++|.+++. .++..+++|+.|++++|
T Consensus 192 ~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n--- 258 (390)
T 3o6n_A 192 NVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN--- 258 (390)
T ss_dssp ECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS---
T ss_pred eccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCC---
Confidence 8888887643 3345788888888888744 332 347888888888888753 57788888888888887
Q ss_pred ccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc
Q 048443 263 FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342 (486)
Q Consensus 263 ~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 342 (486)
....++...|..++ +|+.|++++|+++
T Consensus 259 ~l~~~~~~~~~~l~----------------------------------------------------~L~~L~L~~n~l~- 285 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQ----------------------------------------------------RLERLYISNNRLV- 285 (390)
T ss_dssp CCCEEESGGGTTCS----------------------------------------------------SCCEEECCSSCCC-
T ss_pred cCCCcChhHccccc----------------------------------------------------cCCEEECCCCcCc-
Confidence 33333333344433 4555555555555
Q ss_pred cCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCCCCCCCCCC
Q 048443 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIPQANQFPTF 414 (486)
Q Consensus 343 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p~~~~~~~~ 414 (486)
.+|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+ +++|++|++++|++++.... ..+..+
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~ 363 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR-ALFRNV 363 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHH-HHTTTC
T ss_pred ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhHH-HHHHHH
Confidence 23444445555555555555555 344445555555555555555 34566677777777654322 234455
Q ss_pred CCccccCCcCCCCCC
Q 048443 415 GYSSFNGNSRLCGKP 429 (486)
Q Consensus 415 ~~~~~~~np~~c~~~ 429 (486)
....+.+++..|.++
T Consensus 364 ~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 364 ARPAVDDADQHCKID 378 (390)
T ss_dssp CTTTBCCCCSCCCTT
T ss_pred HhhcccccCceeccc
Confidence 556677788888654
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-34 Score=300.02 Aligned_cols=323 Identities=19% Similarity=0.156 Sum_probs=232.8
Q ss_pred hhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEE
Q 048443 26 FLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYL 104 (486)
Q Consensus 26 ~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L 104 (486)
.++.+. ++|.+.+..+..|+.+++|++|+|++|.+.+..|..|+.+++|++|+|+ +|.+++..|..|.. +++|++|
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L 128 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQN--VPLLTVL 128 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTT--CTTCCEE
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECC-CCcCCCCCHHHHcC--CCCCCEE
Confidence 344444 5555555555557788899999999999888888888899999999998 88888888888888 8999999
Q ss_pred EccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEE
Q 048443 105 NLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLS 183 (486)
Q Consensus 105 ~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~ 183 (486)
+|++|.++.+|. ..+. +++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..++. |+.|+
T Consensus 129 ~L~~n~l~~l~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~-L~~L~ 198 (597)
T 3oja_B 129 VLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS-LFHAN 198 (597)
T ss_dssp ECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTT-CSEEE
T ss_pred EeeCCCCCCCCH------HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhh-hhhhh
Confidence 999998887632 3344 788999999999998877778888999999999999888542 445665 88899
Q ss_pred ccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCc
Q 048443 184 LQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263 (486)
Q Consensus 184 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 263 (486)
+++|.+.+. ...++|+.|++++|.++.. +..+ .++|++|++++|.+++ +.++..+++|+.|++++|.
T Consensus 199 l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~--- 265 (597)
T 3oja_B 199 VSYNLLSTL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE--- 265 (597)
T ss_dssp CCSSCCSEE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC---
T ss_pred cccCccccc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCc---
Confidence 998888653 3446788999999988744 3322 3688899999998875 4678888888888888873
Q ss_pred cccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccccc
Q 048443 264 MGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE 343 (486)
Q Consensus 264 ~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 343 (486)
...++...|..+ ++|+.|+|++|.+++
T Consensus 266 l~~~~~~~~~~l----------------------------------------------------~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 266 LEKIMYHPFVKM----------------------------------------------------QRLERLYISNNRLVA- 292 (597)
T ss_dssp CCEEESGGGTTC----------------------------------------------------SSCCEEECTTSCCCE-
T ss_pred cCCCCHHHhcCc----------------------------------------------------cCCCEEECCCCCCCC-
Confidence 322322223333 446666666666663
Q ss_pred CccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC--------CCCCCEEeccCCccccCCCCCCCCCCCC
Q 048443 344 MPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR--------LTFLEFFNATHNNLTGPIPQANQFPTFG 415 (486)
Q Consensus 344 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~L~~L~ls~N~l~~~~p~~~~~~~~~ 415 (486)
+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|+ +++|+.|++++|+++|..+. ..+..+.
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~ 370 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR-ALFRNVA 370 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHH-HHTTTCC
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHH-HHHHHHh
Confidence 4555555666666666666666 455556666666666666666 45677788888888765432 2455566
Q ss_pred CccccCCcCCCCCC
Q 048443 416 YSSFNGNSRLCGKP 429 (486)
Q Consensus 416 ~~~~~~np~~c~~~ 429 (486)
...+.+++..|+.+
T Consensus 371 ~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 371 RPAVDDADQHCKID 384 (597)
T ss_dssp TTTBCCCCCCCCTT
T ss_pred hhccccccccCCcc
Confidence 66778888889754
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-34 Score=275.84 Aligned_cols=258 Identities=30% Similarity=0.494 Sum_probs=170.1
Q ss_pred CCCCeeccCCCCcccc--cCCchhccccCCCCcEEEccC-CCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc
Q 048443 72 SSLERLDTFPPMKIHG--NIPKWLLNPSMKNFSYLNLSK-NYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW 147 (486)
Q Consensus 72 ~~L~~L~L~~~n~i~~--~~p~~~~~~~l~~L~~L~Ls~-N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~ 147 (486)
.+++.|+++ +|.+.+ .+|..+.. +++|++|++++ |.+... +|..+. +++|++|++++|++++.+|..
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~l~~--l~~L~~L~L~~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGP------IPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGGGGG--CTTCSEEEEEEETTEESC------CCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECC-CCCccCCcccChhHhC--CCCCCeeeCCCCCccccc------CChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 355566666 566655 55556655 66666666653 555433 344444 566666666666666666666
Q ss_pred ccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC-CccEEECcCCccccccCccCcCCCC
Q 048443 148 ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS-DLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 148 ~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
|..+++|++|++++|.+++..|..+..++. |++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..++
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCC-CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 667777777777777776666666666665 77777777777666666666666 677777777777766666666665
Q ss_pred CCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCC
Q 048443 227 LEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFP 306 (486)
Q Consensus 227 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (486)
|++|++++|.+.+..|..+..++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------------------------------- 221 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDK--------------------------------------------------------- 221 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTS---------------------------------------------------------
T ss_pred ccEEECcCCcccCcCCHHHhcCC---------------------------------------------------------
Confidence 77777777776655555444433
Q ss_pred CCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
+|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|..+++|++|+++
T Consensus 222 ----------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-- 276 (313)
T 1ogq_A 222 ----------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS-- 276 (313)
T ss_dssp ----------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC--
T ss_pred ----------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc--
Confidence 355555555666544444 6667778888888888877777777776666655555
Q ss_pred CCCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCCCCCCC
Q 048443 387 RLTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLPKEC 434 (486)
Q Consensus 387 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~~~~~C 434 (486)
+|+++|.+|....+..+..+.+.+||++||.|.. .|
T Consensus 277 -----------~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 277 -----------FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp -----------SSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred -----------CCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 4457777777777777888888899999987766 46
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-33 Score=292.27 Aligned_cols=380 Identities=20% Similarity=0.115 Sum_probs=286.5
Q ss_pred Ccccceeeeehhcc---CC---Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 8 ELTRLTILLFYLMT---SD---SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 8 ~l~~l~~~~~~~~~---~~---~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
.+++|+++++.+.. .. .+.|+.|+ ++|+|++..|.+|.++++|++|+|++|++.+..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56889999887432 22 34566666 8899999888899999999999999999998888899999999999999
Q ss_pred CCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC----
Q 048443 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY---- 155 (486)
Q Consensus 81 ~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---- 155 (486)
+|++++..+..|.+ +++|++|++++|.++.++ .|..+. +++|++|++++|++++..+..|..+.+++
T Consensus 133 -~N~l~~l~~~~~~~--L~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 133 -ETNLASLENFPIGH--LKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp -TSCCCCSTTCCCTT--CTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred -CCcCCCCChhhhhc--CcccCeeccccCccccCC-----CchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 99999888888988 999999999999998764 456666 89999999999999977776665544332
Q ss_pred EEECcCCcCcccccc-----------------------------------------------------------------
Q 048443 156 VLDLSDNNLSGELLQ----------------------------------------------------------------- 170 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~----------------------------------------------------------------- 170 (486)
.++++.|.++...+.
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 455555543311100
Q ss_pred --------------------------------------hhhhcCCCCcEEEccCccccccCCc-----------------
Q 048443 171 --------------------------------------CLGNFSGGLSVLSLQGKNFFGTTPD----------------- 195 (486)
Q Consensus 171 --------------------------------------~l~~~~~~L~~L~L~~n~i~~~~~~----------------- 195 (486)
.+.... .++.|++.+|.+.+..+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCC-CCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccch-hhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 011111 266677776665443221
Q ss_pred --cccCCCCccEEECcCCcccc--ccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhh
Q 048443 196 --TFMNGSDLRMVDLSHNLLQG--KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKY 271 (486)
Q Consensus 196 --~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~ 271 (486)
.+..+++|+.|++++|.+.. ..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++..+. .....+...
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~ 440 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN--LKQMSEFSV 440 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSE--EESTTSSCT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcc--ccccccccc
Confidence 23357889999999998753 345566778899999999888764 45567788899999888753 445556666
Q ss_pred hhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcc----ccCcccCcccEEEcccccccccCccc
Q 048443 272 FQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMM----THDKIPDILKGIILSSNRFDGEMPTS 347 (486)
Q Consensus 272 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~~~~~~~ 347 (486)
|..+..+..++++.+......... ....+.+..++++++.... .....+++|+.|+|++|++++..|..
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~-------~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGI-------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTT-------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccccccccccccccccccccccc-------cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 788888888888877432111111 1122455677777665432 22344788999999999999989999
Q ss_pred hhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------C-CCCCEEeccCCccccCCC
Q 048443 348 IANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------L-TFLEFFNATHNNLTGPIP 406 (486)
Q Consensus 348 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l-~~L~~L~ls~N~l~~~~p 406 (486)
|.++++|++|+|++|+|++..|..|.++++|++|||++|+ + ++|++|++++|+++|.+.
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999998889999999999999999998 2 579999999999998775
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-33 Score=283.02 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=107.0
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
++|.+++. | .++.+++|++|++++|++.+. | ++.+++|++|+++ +|.+++. + +.. +++|++|++++|++
T Consensus 50 s~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls-~N~l~~~-~--~~~--l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 50 HNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACD-SNKLTNL-D--VTP--LTKLTYLNCDTNKL 118 (457)
T ss_dssp CSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECC-SSCCSCC-C--CTT--CTTCCEEECCSSCC
T ss_pred cCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECc-CCCCcee-e--cCC--CCcCCEEECCCCcC
Confidence 44555542 3 456666666666666665553 2 5566666666666 6666553 2 444 66666666666666
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.+| +. +++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..++. |++|++++|+++
T Consensus 119 ~~l~---------~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~ 183 (457)
T 3bz5_A 119 TKLD---------VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQ-LTTLDCSFNKIT 183 (457)
T ss_dssp SCCC---------CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTT-CCEEECCSSCCC
T ss_pred Ceec---------CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCc-CCEEECCCCccc
Confidence 5531 22 4566666666666654 22 555566666666666433233 2444444 666666666665
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+. | +..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| ++.+++|+.|++++|
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 42 2 45555666666666666543 25555666666666666654 23 555566666666655
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.5e-32 Score=264.93 Aligned_cols=281 Identities=19% Similarity=0.168 Sum_probs=222.8
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCC
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
++.+. .+|..+. +++++|++++|++.+..+..|.++++|++|+++ +|.+++..|..+.. +++|++|++++|.++
T Consensus 40 ~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~ 113 (330)
T 1xku_A 40 DLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAP--LVKLERLYLSKNQLK 113 (330)
T ss_dssp TSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTT--CTTCCEEECCSSCCS
T ss_pred CCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECC-CCcCCeeCHHHhcC--CCCCCEEECCCCcCC
Confidence 33443 4665554 689999999999888888889999999999999 99999888999988 999999999999998
Q ss_pred CCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc--cccchhhhcCCCCcEEEccCcccc
Q 048443 113 RFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG--ELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 113 ~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
++|. .+ .++|++|++++|++++..+..|.++++|++|++++|.+.. ..+..+..++. |++|++++|.++
T Consensus 114 ~l~~-------~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~ 184 (330)
T 1xku_A 114 ELPE-------KM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADTNIT 184 (330)
T ss_dssp BCCS-------SC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CCEEECCSSCCC
T ss_pred ccCh-------hh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-cCEEECCCCccc
Confidence 7643 22 3789999999999997777788999999999999999863 56777888887 999999999987
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
.. |..+. ++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.++..+++|+.|++++| ....+|..
T Consensus 185 ~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N---~l~~lp~~ 258 (330)
T 1xku_A 185 TI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN---KLVKVPGG 258 (330)
T ss_dssp SC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS---CCSSCCTT
T ss_pred cC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC---cCccCChh
Confidence 54 44333 78999999999999887888999999999999999998887778888899999998887 33455543
Q ss_pred hhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhc
Q 048443 271 YFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIAN 350 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 350 (486)
. . .+++|+.|++++|.+++..+..|..
T Consensus 259 l-~----------------------------------------------------~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 259 L-A----------------------------------------------------DHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp T-T----------------------------------------------------TCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred h-c----------------------------------------------------cCCCcCEEECCCCcCCccChhhcCC
Confidence 1 1 1356888888888888665555543
Q ss_pred ------cCCCCeeeCCCcccCc--cCchhccCCCCCCEEeCCCCC
Q 048443 351 ------LKGLQVLGLASNNLQG--HIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 351 ------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
...++.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3678888999998863 566788888888888888875
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-33 Score=277.27 Aligned_cols=302 Identities=20% Similarity=0.153 Sum_probs=251.0
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.++++++|++++|.+....+..|..+++|++|+++ +|.+++..+..+.. +++|++|++++|.++.+ .|..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYL------PPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTT--CTTCCEEECCSSCCCCC------CTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECC-CCcccccChhhccC--CCCcCEEECCCCCCCcC------CHHHh
Confidence 46899999999999877766678999999999999 99999888889988 99999999999999987 34555
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCcc
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 204 (486)
. +++|++|++++|+++...+..|..+++|++|++++|.+++..+..+..++. |++|++++|.+++. .+..+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEEECCSSCCSBC---CGGGCTTCS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC-CCEEECCCCcCCcc---ccccccccc
Confidence 5 899999999999999555555789999999999999999877778888887 99999999999875 355678999
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
+|++++|.+++. ...++|++|++++|.+..... ...++|+.|++++|. ...++.
T Consensus 190 ~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~---l~~~~~--------------- 243 (390)
T 3o6n_A 190 HANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNN---LTDTAW--------------- 243 (390)
T ss_dssp EEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSC---CCCCGG---------------
T ss_pred eeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCC---CcccHH---------------
Confidence 999999988742 345689999999999975432 224788888888863 111110
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
...+++|+.|++++|.+++..|..+..+++|++|++++|++
T Consensus 244 ---------------------------------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 244 ---------------------------------------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp ---------------------------------------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred ---------------------------------------HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 01146799999999999988899999999999999999999
Q ss_pred CccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCC
Q 048443 365 QGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 365 ~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~ 428 (486)
+ .+|..+..+++|++|++++|+ +++|++|++++|+++.. | ...+..+..+++.+||+.|++
T Consensus 285 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 285 V-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp C-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred c-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 9 456667889999999999999 46899999999999865 3 346778889999999999953
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-32 Score=278.17 Aligned_cols=227 Identities=21% Similarity=0.239 Sum_probs=152.5
Q ss_pred hhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEE
Q 048443 26 FLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYL 104 (486)
Q Consensus 26 ~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L 104 (486)
.++.|. .++.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|+++ +|.+.+..+ +.. +++|++|
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~-~n~l~~~~~--~~~--l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIADITP--LAN--LTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEE
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECC-CCccccChh--hcC--CCCCCEE
Confidence 444444 4444443 45 46777888888888888766544 7788888888888 787776554 666 8888888
Q ss_pred EccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEE
Q 048443 105 NLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLS 183 (486)
Q Consensus 105 ~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~ 183 (486)
++++|.++.++. +. +++|++|++++|.+++ ++ .+..+++|+.|+++ |.+.+.. .+..++. |++|+
T Consensus 118 ~L~~n~l~~~~~--------~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~-L~~L~ 183 (466)
T 1o6v_A 118 TLFNNQITDIDP--------LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTT-LERLD 183 (466)
T ss_dssp ECCSSCCCCCGG--------GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTT-CCEEE
T ss_pred ECCCCCCCCChH--------HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCC-CCEEE
Confidence 888888777532 33 6788888888888774 33 47777777777775 3444222 2666665 77777
Q ss_pred ccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCc
Q 048443 184 LQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263 (486)
Q Consensus 184 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 263 (486)
+++|.+.+. ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+.+. ..+..+++|+.|++++| .
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n---~ 254 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN---Q 254 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS---C
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCC---c
Confidence 777777654 246677777777777777775443 56677777777777777643 35667777777777776 3
Q ss_pred cccCChhhhhccccccccccccc
Q 048443 264 MGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 264 ~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
...++. +..+++|+.++++++
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGAN 275 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSS
T ss_pred cccchh--hhcCCCCCEEECCCC
Confidence 333333 566677777777666
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-32 Score=274.83 Aligned_cols=358 Identities=20% Similarity=0.180 Sum_probs=240.6
Q ss_pred ccCcccceeeeehhccCCCh------hhhhhc-cCCcccccCCcCCCCCCCC-------------CEeeCcCCCCCCCCc
Q 048443 6 CSELTRLTILLFYLMTSDSP------FLDRLQ-RLSDFSGQIPPSLGNLNQL-------------QWLDLAFNNFLRELP 65 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~~~~~------~l~~L~-~~n~~~~~~p~~~~~l~~L-------------~~L~Ls~n~~~~~~~ 65 (486)
-..++.++++.+.+ +..|+ .++.|+ +.|.+.|.+|.+++++++| ++|++++|++.+. |
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-P 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-C
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-C
Confidence 35677788877765 44443 344444 7788889999999888764 8999999987653 3
Q ss_pred ccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC
Q 048443 66 ASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP 145 (486)
Q Consensus 66 ~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~ 145 (486)
. -.++|++|+++ +|.+++ +|.. +++|++|++++|+++.+|. . .++|++|++++|++++ +|
T Consensus 88 ~---~~~~L~~L~l~-~n~l~~-lp~~-----~~~L~~L~l~~n~l~~l~~----~-----~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 88 E---LPPHLESLVAS-CNSLTE-LPEL-----PQSLKSLLVDNNNLKALSD----L-----PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp S---CCTTCSEEECC-SSCCSS-CCCC-----CTTCCEEECCSSCCSCCCS----C-----CTTCCEEECCSSCCSS-CC
T ss_pred C---CcCCCCEEEcc-CCcCCc-cccc-----cCCCcEEECCCCccCcccC----C-----CCCCCEEECcCCCCCC-Cc
Confidence 3 23789999999 898887 5542 6789999999999887654 1 2689999999999995 77
Q ss_pred ccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCC
Q 048443 146 SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCA 225 (486)
Q Consensus 146 ~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 225 (486)
.|.++++|++|++++|++++ +|..+ . +|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .+
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~~---~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~ 215 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDLP---P-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PL 215 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CT
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCCc---c-cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cC
Confidence 59999999999999999985 55543 2 39999999999987 45 58899999999999999985 4543 25
Q ss_pred CCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccC
Q 048443 226 VLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYF 305 (486)
Q Consensus 226 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 305 (486)
+|++|++++|.+. .+| .++.+++|+.|++++| ....+|.. .++|+.+++++|.... ....
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N---~l~~l~~~----~~~L~~L~l~~N~l~~-----------l~~~ 275 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN---LLKTLPDL----PPSLEALNVRDNYLTD-----------LPEL 275 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS---CCSSCCSC----CTTCCEEECCSSCCSC-----------CCCC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC---cCCccccc----ccccCEEECCCCcccc-----------cCcc
Confidence 8999999999998 556 4889999999999998 44456642 3678888888874321 1112
Q ss_pred CCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCC
Q 048443 306 PQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSK 385 (486)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 385 (486)
++.+..++++++.+... +..+++|+.|++++|.+++ ++. ..++|++|++++|++++ +|.. +++|++|++++
T Consensus 276 ~~~L~~L~ls~N~l~~l-~~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGL-SELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 346 (454)
T ss_dssp CTTCCEEECCSSCCSEE-SCCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred cCcCCEEECcCCccCcc-cCcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence 35677788887776542 2335678888888888874 222 12478888888888885 5543 47788888888
Q ss_pred CCC-------CCCCEEeccCCcccc--CCCCCC-CC-------------CCCCCccccCCcCCC
Q 048443 386 NRL-------TFLEFFNATHNNLTG--PIPQAN-QF-------------PTFGYSSFNGNSRLC 426 (486)
Q Consensus 386 N~l-------~~L~~L~ls~N~l~~--~~p~~~-~~-------------~~~~~~~~~~np~~c 426 (486)
|++ ++|++|++++|++++ .+|... .+ ..++.+++.+|+...
T Consensus 347 N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 347 NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 873 467888888888887 566541 11 456677777887654
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7.3e-33 Score=267.26 Aligned_cols=286 Identities=17% Similarity=0.174 Sum_probs=225.7
Q ss_pred hhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEE
Q 048443 27 LDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLN 105 (486)
Q Consensus 27 l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~ 105 (486)
++.++ +++.+. .+|..+. +++++|++++|++.+..+..|.++++|++|+++ +|.+++..|..+.. +++|++|+
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~ 108 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSP--LRKLQKLY 108 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGSTT--CTTCCEEE
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECC-CCccCccCHhHhhC--cCCCCEEE
Confidence 34444 445554 5676664 689999999999888888889999999999999 99999888889988 99999999
Q ss_pred ccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc--cccchhhhcCCCCcEEE
Q 048443 106 LSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG--ELLQCLGNFSGGLSVLS 183 (486)
Q Consensus 106 Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~~~~~L~~L~ 183 (486)
+++|.++.+|. .+ .++|++|++++|++++..+..|.++++|++|++++|.++. ..+..+..+ . |++|+
T Consensus 109 L~~n~l~~l~~-------~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~-L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVEIPP-------NL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K-LNYLR 178 (332)
T ss_dssp CCSSCCCSCCS-------SC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C-CSCCB
T ss_pred CCCCcCCccCc-------cc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c-cCEEE
Confidence 99999987643 22 2789999999999997666778999999999999999863 556667666 4 99999
Q ss_pred ccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCc
Q 048443 184 LQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCF 263 (486)
Q Consensus 184 L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 263 (486)
+++|.+++. |..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.++..+++|+.|++++| .
T Consensus 179 l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N---~ 252 (332)
T 2ft3_A 179 ISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN---K 252 (332)
T ss_dssp CCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS---C
T ss_pred CcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC---c
Confidence 999999764 44443 68999999999999777788999999999999999998888888889999999999887 3
Q ss_pred cccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccccc
Q 048443 264 MGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGE 343 (486)
Q Consensus 264 ~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 343 (486)
...+|.. +.. +++|+.|++++|.+++.
T Consensus 253 l~~lp~~-l~~----------------------------------------------------l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 253 LSRVPAG-LPD----------------------------------------------------LKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCBCCTT-GGG----------------------------------------------------CTTCCEEECCSSCCCBC
T ss_pred CeecChh-hhc----------------------------------------------------CccCCEEECCCCCCCcc
Confidence 4455543 111 35688888888888866
Q ss_pred Cccchhc------cCCCCeeeCCCcccC--ccCchhccCCCCCCEEeCCCCC
Q 048443 344 MPTSIAN------LKGLQVLGLASNNLQ--GHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 344 ~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+..|.. ...|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6665554 356888999999887 5777788889999999998875
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.7e-34 Score=272.33 Aligned_cols=249 Identities=26% Similarity=0.389 Sum_probs=217.4
Q ss_pred CCCCEeeCcCCCCCC--CCcccccCCCCCCeeccCCC-CcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcc
Q 048443 48 NQLQWLDLAFNNFLR--ELPASIGSLSSLERLDTFPP-MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT 124 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~~-n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~ 124 (486)
.+++.|+|++|++.+ .+|..|..+++|++|+++ + |.+.+.+|..+.. +++|++|++++|.++.. +|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~-~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~------~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAIAK--LTQLHYLYITHTNVSGA------IPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEE-EETTEESCCCGGGGG--CTTCSEEEEEEECCEEE------CCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCC-CCCcccccCChhHhc--CCCCCEEECcCCeeCCc------CCHH
Confidence 579999999999998 899999999999999998 6 8999999999999 99999999999999844 5666
Q ss_pred cc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCc
Q 048443 125 TL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203 (486)
Q Consensus 125 ~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 203 (486)
+. +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+..+|++|++++|++.+..|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 66 899999999999999999999999999999999999999899999999983499999999999999999999887 9
Q ss_pred cEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcccccccccc
Q 048443 204 RMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283 (486)
Q Consensus 204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~ 283 (486)
++|++++|.+++..|..+..+++|++|++++|.+++..|. +..+
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l----------------------------------- 243 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS----------------------------------- 243 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC-----------------------------------
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc-----------------------------------
Confidence 9999999999998999999999999999999999754443 2222
Q ss_pred ccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcc
Q 048443 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
++|++|++++|.+++.+|..+..+++|++|+|++|+
T Consensus 244 --------------------------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 244 --------------------------------------------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp --------------------------------------------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred --------------------------------------------CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 447778888888887888888888888888888888
Q ss_pred cCccCchhccCCCCCCEEeCCCCC
Q 048443 364 LQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 364 l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+++.+|.. ..+++|+.|++++|+
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccccCCCC-ccccccChHHhcCCC
Confidence 88877765 666777777666665
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.2e-32 Score=273.56 Aligned_cols=330 Identities=24% Similarity=0.255 Sum_probs=257.5
Q ss_pred ccCcccceeeeehhcc----CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccC
Q 048443 6 CSELTRLTILLFYLMT----SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTF 80 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~----~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 80 (486)
+.+++.+++..+.+.. ...+.++.|+ ++|.+.+..| +.++++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 4567777777655322 1234556665 7788877654 9999999999999999887655 9999999999999
Q ss_pred CCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEEC
Q 048443 81 PPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDL 159 (486)
Q Consensus 81 ~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 159 (486)
+|.+++..+ +.. +++|++|++++|.++.++ . +. +++|++|+++ |.+.+. + .+..+++|+.|++
T Consensus 121 -~n~l~~~~~--~~~--l~~L~~L~l~~n~l~~~~-------~-~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l 184 (466)
T 1o6v_A 121 -NNQITDIDP--LKN--LTNLNRLELSSNTISDIS-------A-LSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDI 184 (466)
T ss_dssp -SSCCCCCGG--GTT--CTTCSEEEEEEEEECCCG-------G-GTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEEC
T ss_pred -CCCCCCChH--HcC--CCCCCEEECCCCccCCCh-------h-hccCCcccEeecC-CcccCc-h-hhccCCCCCEEEC
Confidence 999987644 777 999999999999998753 2 33 7899999996 555533 2 3889999999999
Q ss_pred cCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 160 SDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 160 s~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
++|.+++. ..+..++. |++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 185 ~~n~l~~~--~~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CSSCCCCC--GGGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred cCCcCCCC--hhhccCCC-CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence 99998853 35778887 9999999999987655 67789999999999999853 468889999999999999987
Q ss_pred CCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCC
Q 048443 240 TFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQ 319 (486)
Q Consensus 240 ~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 319 (486)
..+ +..+++|+.|++++| ....+|. +..+++|+.++++++.... .
T Consensus 258 ~~~--~~~l~~L~~L~l~~n---~l~~~~~--~~~l~~L~~L~L~~n~l~~-~--------------------------- 302 (466)
T 1o6v_A 258 LAP--LSGLTKLTELKLGAN---QISNISP--LAGLTALTNLELNENQLED-I--------------------------- 302 (466)
T ss_dssp CGG--GTTCTTCSEEECCSS---CCCCCGG--GTTCTTCSEEECCSSCCSC-C---------------------------
T ss_pred chh--hhcCCCCCEEECCCC---ccCcccc--ccCCCccCeEEcCCCcccC-c---------------------------
Confidence 655 888999999999998 4444554 6778888888887763211 0
Q ss_pred ccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC---------CCC
Q 048443 320 MMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR---------LTF 390 (486)
Q Consensus 320 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~ 390 (486)
.....+++|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|++|++++|+ +++
T Consensus 303 --~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 376 (466)
T 1o6v_A 303 --SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTR 376 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred --hhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCC
Confidence 001235678889999988886554 67888899999999888854 467888888888888888 567
Q ss_pred CCEEeccCCcccc
Q 048443 391 LEFFNATHNNLTG 403 (486)
Q Consensus 391 L~~L~ls~N~l~~ 403 (486)
|+.|++++|++++
T Consensus 377 L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 377 ITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCCEEEEC
T ss_pred CCEEeccCCcccC
Confidence 8888888888886
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-33 Score=287.53 Aligned_cols=302 Identities=20% Similarity=0.159 Sum_probs=252.2
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+.+++.+++++|.+....+..|..+++|++|+++ +|.+++..|..|.. +++|++|+|++|.++.+ .|..+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYL------PPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTT--CTTCCEEECCSSCCCCC------CTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcC--CCCCCEEECCCCcCCCC------CHHHH
Confidence 36789999999999887777778999999999999 99999988889998 99999999999999987 34455
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCcc
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 204 (486)
. +++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..+..++. |++|++++|.+++.. +..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~---~~~l~~L~ 195 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLF 195 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECTTSCCSBCC---GGGCTTCS
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEEECcCCCCCCcC---hhhhhhhh
Confidence 5 899999999999999666666799999999999999999888888998887 999999999998753 45678899
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|. ....+
T Consensus 196 ~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~---l~~~~---------------- 248 (597)
T 3oja_B 196 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN---LTDTA---------------- 248 (597)
T ss_dssp EEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSC---CCCCG----------------
T ss_pred hhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCC---CCCCh----------------
Confidence 99999998874 344578999999999987544332 3678888888863 11110
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
....+++|+.|+|++|.+++..|..|..+++|++|+|++|.+
T Consensus 249 --------------------------------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 249 --------------------------------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp --------------------------------------GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred --------------------------------------hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 011146799999999999998899999999999999999999
Q ss_pred CccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCC
Q 048443 365 QGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGK 428 (486)
Q Consensus 365 ~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~ 428 (486)
++ +|..+..+++|++|+|++|. +++|++|++++|++++.. ...+..+..+.+.+||+.|++
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 95 57777889999999999999 468899999999998653 345778889999999999954
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.3e-32 Score=270.04 Aligned_cols=311 Identities=22% Similarity=0.270 Sum_probs=114.7
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
++|++|++++|.+.+ +|.. +++|++|+++ +|++++. |.. .++|++|++++|+++++|. +.
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~-~n~l~~l-~~~-----~~~L~~L~L~~n~l~~lp~--------~~~ 151 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVD-NNNLKAL-SDL-----PPLLEYLGVSNNQLEKLPE--------LQN 151 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECC-SSCCSCC-CSC-----CTTCCEEECCSSCCSSCCC--------CTT
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECC-CCccCcc-cCC-----CCCCCEEECcCCCCCCCcc--------cCC
Confidence 345555555555444 3321 2444455554 4444421 110 2344445555444444221 12
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.++. |++|++++|.+++ +|.. .++|++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~-L~~L~l~~N~l~~-l~~~---~~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPF-LTAIYADNNSLKK-LPDL---PLSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTT-CCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCC-CCEEECCCCcCCc-CCCC---cCcccEE
Confidence 3444444444444442 33221 244444444444443 23 3444443 4444444444443 1211 1244444
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
++++|.++ .+| .++.+++|++|++++|++++ +|. .+++|+.|++++| ....+|.. .++|+.+++++|
T Consensus 221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N---~l~~l~~~----~~~L~~L~ls~N 287 (454)
T 1jl5_A 221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDN---YLTDLPEL----PQSLTFLDVSEN 287 (454)
T ss_dssp ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSS---CCSCCCCC----CTTCCEEECCSS
T ss_pred ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCC---cccccCcc----cCcCCEEECcCC
Confidence 44444444 333 24444444444444444443 121 1234444444444 22223321 134444444443
Q ss_pred hhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc
Q 048443 287 RYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
.... ....++.+..++++.+.+... ...+++|+.|++++|++++ +|.. +++|++|++++|+++
T Consensus 288 ~l~~-----------l~~~~~~L~~L~l~~N~l~~i-~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 288 IFSG-----------LSELPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA- 350 (454)
T ss_dssp CCSE-----------ESCCCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-
T ss_pred ccCc-----------ccCcCCcCCEEECcCCcCCcc-cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-
Confidence 2110 001123334444444443321 1222345555555555553 3332 345555555555555
Q ss_pred cCchhccCCCCCCEEeCCCCCC--------------------------CCCCEEeccCCcccc--CCCCCCCCCCCCCcc
Q 048443 367 HIPSCLGSLTNLESLDLSKNRL--------------------------TFLEFFNATHNNLTG--PIPQANQFPTFGYSS 418 (486)
Q Consensus 367 ~~~~~~~~l~~L~~L~Ls~N~l--------------------------~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~~ 418 (486)
.+|. .+++|++|++++|++ ++|++|++++|++++ .+|. ++..+.
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~ 422 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLR 422 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhhee
Confidence 2333 244555555555552 458888999999987 6664 344455
Q ss_pred ccCCcCCC
Q 048443 419 FNGNSRLC 426 (486)
Q Consensus 419 ~~~np~~c 426 (486)
+.+|.+.|
T Consensus 423 ~~~~~~~~ 430 (454)
T 1jl5_A 423 MNSERVVD 430 (454)
T ss_dssp --------
T ss_pred CcCcccCC
Confidence 55555544
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-32 Score=275.44 Aligned_cols=336 Identities=17% Similarity=0.132 Sum_probs=259.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
......+..+.+++++++|++|++++|.+.+. | .+..+++|++|+++ +|.+++. | +.. +++|++|++++|.+
T Consensus 26 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls-~n~l~~~-~--~~~--l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 26 AAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICT-SNNITTL-D--LSQ--NTNLTYLACDSNKL 97 (457)
T ss_dssp HHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECC-SSCCSCC-C--CTT--CTTCSEEECCSSCC
T ss_pred HhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEcc-CCcCCeE-c--ccc--CCCCCEEECcCCCC
Confidence 34455556666789999999999999998875 5 79999999999999 9999975 4 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
++++ +. +++|++|++++|++++ ++ +..+++|++|++++|++++. + ++.++. |++|++++|...
T Consensus 98 ~~~~---------~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~-L~~L~l~~n~~~ 161 (457)
T 3bz5_A 98 TNLD---------VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQ-LTELDCHLNKKI 161 (457)
T ss_dssp SCCC---------CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTT-CCEEECTTCSCC
T ss_pred ceee---------cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCc-CCEEECCCCCcc
Confidence 8852 33 7999999999999996 44 89999999999999999964 3 677777 999999999665
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|+.|++++| ....+|
T Consensus 162 ~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N---~l~~ip-- 228 (457)
T 3bz5_A 162 TKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN---KLTEID-- 228 (457)
T ss_dssp CCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS---CCSCCC--
T ss_pred ccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC---cccccC--
Confidence 555 47889999999999999996 45 88999999999999999875 4889999999999998 445577
Q ss_pred hhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcccc-CcccCcccEEEcccccccccCcc---
Q 048443 271 YFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTH-DKIPDILKGIILSSNRFDGEMPT--- 346 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~~--- 346 (486)
+..+++|+.+++++|......................+..++++.+...... ...++.|+.|++++|.+.+.+|.
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred -ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCC
Confidence 7788999999999985432111111000001111123445555555543322 23468899999999987665553
Q ss_pred -----chhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC----------------------CCCEEeccCC
Q 048443 347 -----SIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT----------------------FLEFFNATHN 399 (486)
Q Consensus 347 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------------------~L~~L~ls~N 399 (486)
.++.+++|++|++++|++++. + ++.+++|+.|++++|+++ .|+.+++++|
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTT
T ss_pred cceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccC
Confidence 256678899999999999974 3 888999999999999943 2455677777
Q ss_pred ccccCCCCC
Q 048443 400 NLTGPIPQA 408 (486)
Q Consensus 400 ~l~~~~p~~ 408 (486)
+++|.+|..
T Consensus 385 ~l~g~ip~~ 393 (457)
T 3bz5_A 385 SLTIAVSPD 393 (457)
T ss_dssp BEEEECCTT
T ss_pred cEEEEcChh
Confidence 777777754
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=259.25 Aligned_cols=297 Identities=24% Similarity=0.305 Sum_probs=169.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
+..+++|++|++++|.+... + .+..+++|++|+++ +|.+++..+ +.. +++|++|++++|.++.++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~-~n~i~~~~~--~~~--l~~L~~L~L~~n~i~~~~-------- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLN-GNQITDISP--LSN--LVKLTNLYIGTNKITDIS-------- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCCCCCG--------
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEcc-CCccccchh--hhc--CCcCCEEEccCCcccCch--------
Confidence 34566666666666665433 2 35666666666666 666664333 555 666666666666666532
Q ss_pred ccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 124 TTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 124 ~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
.+. +++|++|++++|.+++ ++. +..+++|++|++++|..... +..+..++. |++|++++|.+.+..+ +..+++
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~-L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTG-LNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTT-CCEEECCSSCCCCCGG--GGGCTT
T ss_pred HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCC-CcEEEecCCCcCCchh--hccCCC
Confidence 122 5666666666666663 232 66666666666666644422 233555555 6666666666654433 556666
Q ss_pred ccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccc
Q 048443 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFAN 282 (486)
Q Consensus 203 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~ 282 (486)
|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|+.|+++++ ....++. +..+++|+.++
T Consensus 179 L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n---~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 179 LYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN---KITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS---CCCCCGG--GTTCTTCCEEE
T ss_pred CCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC---ccCCCcc--hhcCCCCCEEE
Confidence 66666666666532 22 5566666666666666654433 566666666666665 3333333 45555555555
Q ss_pred cccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCc
Q 048443 283 SSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 362 (486)
++++.... . .....+++|+.|++++|.+++ + ..+..+++|++|++++|
T Consensus 250 l~~n~l~~-~-----------------------------~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 250 IGTNQISD-I-----------------------------NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCSSCCCC-C-----------------------------GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred CCCCccCC-C-----------------------------hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCC
Confidence 55542110 0 001123556666666666663 2 33566666666666666
Q ss_pred ccCccCchhccCCCCCCEEeCCCCC---------CCCCCEEeccCCccc
Q 048443 363 NLQGHIPSCLGSLTNLESLDLSKNR---------LTFLEFFNATHNNLT 402 (486)
Q Consensus 363 ~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~L~~L~ls~N~l~ 402 (486)
++++..+..+..+++|++|++++|+ +++|++|++++|+++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 6666666666666666666666666 334555555555543
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.5e-31 Score=258.24 Aligned_cols=301 Identities=21% Similarity=0.260 Sum_probs=242.6
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|. +++.+.. +| .+..+++|++|++++|++.+..+ |..+++|++|+++ +|.++.. +.+.. +++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~-~n~i~~~--~~~~~--l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG-TNKITDI--SALQN--LTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCCC--GGGTT--CTTCSE
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEcc-CCcccCc--hHHcC--CCcCCE
Confidence 3445555 5555544 44 48889999999999999876544 9999999999999 9998863 46777 999999
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEE
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L 182 (486)
|++++|.++.++ . +. +++|++|++++|..... +..+..+++|++|++++|.+.+..+ +..++. |++|
T Consensus 115 L~l~~n~i~~~~-------~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~-L~~L 182 (347)
T 4fmz_A 115 LYLNEDNISDIS-------P-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTD-LYSL 182 (347)
T ss_dssp EECTTSCCCCCG-------G-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTT-CSEE
T ss_pred EECcCCcccCch-------h-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCC-CCEE
Confidence 999999998853 2 33 79999999999976644 4458999999999999999985443 778887 9999
Q ss_pred EccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCC
Q 048443 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPC 262 (486)
Q Consensus 183 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~ 262 (486)
++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n--- 253 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN--- 253 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS---
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC---
Confidence 999999976544 7889999999999999985443 8889999999999999986554 889999999999998
Q ss_pred ccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc
Q 048443 263 FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342 (486)
Q Consensus 263 ~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 342 (486)
....++ .+..+++|+.+++++|.... . .....+++|+.|++++|.+++
T Consensus 254 ~l~~~~--~~~~l~~L~~L~l~~n~l~~-~-----------------------------~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 254 QISDIN--AVKDLTKLKMLNVGSNQISD-I-----------------------------SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CCCCCG--GGTTCTTCCEEECCSSCCCC-C-----------------------------GGGGGCTTCSEEECCSSCCCG
T ss_pred ccCCCh--hHhcCCCcCEEEccCCccCC-C-----------------------------hhhcCCCCCCEEECcCCcCCC
Confidence 444453 37788888888888873211 0 011235789999999999998
Q ss_pred cCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 343 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
..+..+..+++|++|++++|.+++..| +..+++|++|++++|+++
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888999999999999999999997666 889999999999999864
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.1e-30 Score=251.86 Aligned_cols=265 Identities=20% Similarity=0.218 Sum_probs=213.9
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.+++.++++++.+. .+|..+. +.|++|+++ +|.+++..+..+.. +++|++|++++|.++.+ .|..+.
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~~ 98 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQ-NNKITEIKDGDFKN--LKNLHTLILINNKISKI------SPGAFAP 98 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECC-SSCCCCBCTTTTTT--CTTCCEEECCSSCCCCB------CTTTTTT
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECC-CCcCCEeChhhhcc--CCCCCEEECCCCcCCee------CHHHhcC
Confidence 47999999999865 4565543 689999999 99999888888988 99999999999999886 455666
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc--cCCccccCCCCcc
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG--TTPDTFMNGSDLR 204 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~ 204 (486)
+++|++|++++|+++ .+|..+. ++|++|++++|.+++..+..+..++. |++|++++|.+.. ..+..|..+++|+
T Consensus 99 l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcC
Confidence 899999999999998 5665554 79999999999999777777888887 9999999999964 6778889999999
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++| ....++...+.
T Consensus 175 ~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~~~----------- 237 (330)
T 1xku_A 175 YIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN---SISAVDNGSLA----------- 237 (330)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS---CCCEECTTTGG-----------
T ss_pred EEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC---cCceeChhhcc-----------
Confidence 9999999998 4565553 89999999999999888889999999999999887 33333322111
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
.+++|+.|++++|.++ .+|..+..+++|++|++++|++
T Consensus 238 -----------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 238 -----------------------------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp -----------------------------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred -----------------------------------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 1356999999999998 7888899999999999999999
Q ss_pred CccCchhccCC------CCCCEEeCCCCC
Q 048443 365 QGHIPSCLGSL------TNLESLDLSKNR 387 (486)
Q Consensus 365 ~~~~~~~~~~l------~~L~~L~Ls~N~ 387 (486)
++..+..|... +.++.|++++|+
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CccChhhcCCcccccccccccceEeecCc
Confidence 97777776543 344445554444
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.7e-31 Score=254.60 Aligned_cols=264 Identities=22% Similarity=0.232 Sum_probs=211.0
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.+++.++++++.+. .+|..+. ++|++|+++ +|.+++..|..+.. +++|++|++++|.++.+ .|..+.
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~~ 100 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQ-NNDISELRKDDFKG--LQHLYALVLVNNKISKI------HEKAFSP 100 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECC-SSCCCEECTTTTTT--CTTCCEEECCSSCCCEE------CGGGSTT
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECC-CCcCCccCHhHhhC--CCCCcEEECCCCccCcc------CHhHhhC
Confidence 37999999999965 5565553 689999999 99999888888988 99999999999999876 455666
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc--cCCccccCCCCcc
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG--TTPDTFMNGSDLR 204 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~ 204 (486)
+++|++|++++|+++ .+|..+. ++|++|++++|++++..+..+..++. |++|++++|.+.. ..+..|..+ +|+
T Consensus 101 l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred cCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccC
Confidence 899999999999998 5665554 79999999999998666667888887 9999999999963 677778777 899
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccc
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
+|++++|.+++ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++| ....++...+..
T Consensus 176 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N---~l~~~~~~~~~~---------- 239 (332)
T 2ft3_A 176 YLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN---QIRMIENGSLSF---------- 239 (332)
T ss_dssp CCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS---CCCCCCTTGGGG----------
T ss_pred EEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC---cCCcCChhHhhC----------
Confidence 99999999984 565554 78999999999999888888889999999998887 333343322221
Q ss_pred cchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCccc
Q 048443 285 QLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNL 364 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 364 (486)
+++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus 240 ------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 240 ------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 356899999999998 7888899999999999999999
Q ss_pred CccCchhccCC------CCCCEEeCCCCC
Q 048443 365 QGHIPSCLGSL------TNLESLDLSKNR 387 (486)
Q Consensus 365 ~~~~~~~~~~l------~~L~~L~Ls~N~ 387 (486)
++..+..|... ..|+.|++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CccChhHccccccccccccccceEeecCc
Confidence 97777776553 345555555544
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=253.77 Aligned_cols=261 Identities=15% Similarity=0.157 Sum_probs=162.2
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
.+|..+. ++|++|++++|++.+..+..|.++++|++|+++ +|.+++..|..+.. +++|++|++++|+++++|
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~--- 116 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLS--- 116 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTT--CTTCCEEECCSSCCSSCC---
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECC-CCccCccCHhhcCC--CCCCCEEECCCCcCCcCC---
Confidence 3454444 467777777777666655567777777777777 77777666666666 777777777777766642
Q ss_pred CCCCcccc-cCccCeeecccCcccccCC-ccccCCCCCCEEECcCC-cCcccccchhhhcCCCCcEEEccCccccccCCc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIP-SWICNLSSLYVLDLSDN-NLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
+..+. +++|++|++++|++++..+ ..|..+++|++|++++| .+.+..+..+..++. |++|++++|.+.+..|.
T Consensus 117 ---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 117 ---SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPK 192 (353)
T ss_dssp ---HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCCEECTT
T ss_pred ---HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcCccCHH
Confidence 12233 5666777777776663222 25666666666666666 355444455655555 66666666666666666
Q ss_pred cccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcc
Q 048443 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCW 275 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l 275 (486)
.|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+...
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------------- 245 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG--------------------------- 245 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------------
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc---------------------------
Confidence 66666666666666666653322233345666666666666654332211100
Q ss_pred ccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc----cCccchhcc
Q 048443 276 NAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG----EMPTSIANL 351 (486)
Q Consensus 276 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~~~~l 351 (486)
.....++.++++++.+++ .+|..+..+
T Consensus 246 -------------------------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 246 -------------------------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp --------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred -------------------------------------------------cccchhhccccccccccCcchhhhHHHHhcc
Confidence 001235555555555543 577889999
Q ss_pred CCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 999999999999994444446888888888888776
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=5.5e-29 Score=234.75 Aligned_cols=209 Identities=19% Similarity=0.126 Sum_probs=179.9
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC-CCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY-FPRFDQHP 118 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~ 118 (486)
+|..+ .++|++|++++|++.+..+..|..+++|++|+++ +|.+++..|..+.. +++|++|++++|. ++.+
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~l~~n~~l~~~---- 96 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTG--LALLEQLDLSDNAQLRSV---- 96 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTT--CTTCCEEECCSCTTCCCC----
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECC-CCccceeCHhhcCC--ccCCCEEeCCCCCCcccc----
Confidence 45443 3689999999999988888889999999999999 99999888889988 9999999999997 7775
Q ss_pred CCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTF 197 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~ 197 (486)
.+..+. +++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++. |++|++++|++++..+..|
T Consensus 97 --~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 97 --DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEECTTTT
T ss_pred --CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-ccEEECCCCcccccCHHHh
Confidence 344555 789999999999999777888899999999999999998766666888887 9999999999988877788
Q ss_pred cCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 198 MNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
..+++|++|++++|.+++..|.++..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 899999999999999998888889999999999999999987777778888888888888873
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.5e-29 Score=241.19 Aligned_cols=207 Identities=20% Similarity=0.243 Sum_probs=152.7
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCccccc--CCchhccccCCCCcEEEccCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGN--IPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~--~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l 117 (486)
+|..+. ++|++|++++|++....+..|.++++|++|+++ +|.++.. .+..+.. +++|++|++++|.++.+
T Consensus 22 ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~l--- 93 (306)
T 2z66_A 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVITM--- 93 (306)
T ss_dssp CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCEEEEEEHHHHS--CSCCCEEECCSCSEEEE---
T ss_pred CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECC-CCccCcccCccccccc--ccccCEEECCCCccccC---
Confidence 454443 578888888888776656667888888888888 8888743 3566666 88888888888887764
Q ss_pred CCCCCcccc-cCccCeeecccCcccccCC-ccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc-cCC
Q 048443 118 PTVLPWTTL-STKIRHYLISKNNLTGEIP-SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG-TTP 194 (486)
Q Consensus 118 ~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~-~~~ 194 (486)
|..+. +++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..++. |++|++++|.+.+ ..|
T Consensus 94 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 94 ----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLP 168 (306)
T ss_dssp ----EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEEGGGEEC
T ss_pred ----hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCccccccch
Confidence 33344 7788888888888875443 46777888888888888887767777777776 8888888888776 567
Q ss_pred ccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 195 DTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 77777888888888888887766777777888888888888877666656666666665555554
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-29 Score=241.16 Aligned_cols=246 Identities=21% Similarity=0.190 Sum_probs=166.8
Q ss_pred CEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCc
Q 048443 51 QWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STK 129 (486)
Q Consensus 51 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~ 129 (486)
+.++.+++.+. .+|..+. ++|++|+++ +|.++...+..+.. +++|++|++++|.++.+.. .+..+. +++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~-~n~l~~i~~~~~~~--l~~L~~L~L~~n~l~~~~~----~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELE-SNKLQSLPHGVFDK--LTQLTKLSLSSNGLSFKGC----CSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECC-SSCCCCCCTTTTTT--CTTCSEEECCSSCCCEEEE----EEHHHHSCSC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECC-CCccCccCHhHhhc--cccCCEEECCCCccCcccC----cccccccccc
Confidence 46777777754 3444332 578888888 88887555555666 8888888888887764311 122222 677
Q ss_pred cCeeecccCcccccCCccccCCCCCCEEECcCCcCccccc-chhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELL-QCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..++. |++|++++|.+.+..+..|..+++|++|++
T Consensus 80 L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-CCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC-CCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 888888888777 456667777888888888877775443 45666665 777777777777777777777777777777
Q ss_pred cCCcccc-ccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 209 SHNLLQG-KIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 209 ~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
++|.+++ ..|..+..+++|++|++++|.+++..|.++..++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------------------- 199 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-------------------------------------- 199 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT--------------------------------------
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC--------------------------------------
Confidence 7777765 4666777777777777777777665555544443
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
+|+.|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 200 -----------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 200 -----------------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp -----------------------------------------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred -----------------------------------------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 355666666666655555667777777777777777777
Q ss_pred CchhccCCC-CCCEEeCCCCC
Q 048443 368 IPSCLGSLT-NLESLDLSKNR 387 (486)
Q Consensus 368 ~~~~~~~l~-~L~~L~Ls~N~ 387 (486)
.|..+..++ +|++|++++|+
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCC
T ss_pred CHHHHHhhhccCCEEEccCCC
Confidence 776666663 66666666665
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=9.2e-29 Score=248.75 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=179.6
Q ss_pred CCcccccCcccceeeeehhcc----CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTILLFYLMT----SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~----~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
|..|.|..-.....|.....+ ..++.++.|+ ++|++.+..|..|.++++|++|+|++|++.+..+..|.++++|+
T Consensus 47 p~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 47 PSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp CTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence 567888754333444433222 2345666776 77777777777888888888888888887777777788888888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeeccc-CcccccCCccccCCCC
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISK-NNLTGEIPSWICNLSS 153 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~~l~~ 153 (486)
+|+|+ +|.++...+..+.. +++|++|+|++|+++.++ +..+. +++|++|++++ +.+....+..|.++++
T Consensus 127 ~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 127 TLELF-DNWLTVIPSGAFEY--LSKLRELWLRNNPIESIP------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp EEECC-SSCCSBCCTTTSSS--CTTCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred EEECC-CCcCCccChhhhcc--cCCCCEEECCCCCcceeC------HhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 88888 78887766666777 788888888888877653 23344 67888888887 4444344446777888
Q ss_pred CCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEcc
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 233 (486)
|++|++++|++++ +| .+..++. |++|++++|.+++..|..|.++++|++|++++|.+++..+.+|..+++|++|+++
T Consensus 198 L~~L~L~~n~l~~-~~-~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-MP-NLTPLVG-LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CCEEECTTSCCSS-CC-CCTTCTT-CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccc-cc-ccccccc-ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 8888888888774 33 4566665 8888888888887777778888888888888888877777777788888888888
Q ss_pred CCccccCCCccccCCCCCCEEEcCcc
Q 048443 234 NNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 234 ~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+|++++..+..+..+++|+.|++++|
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCcCCccChHHhccccCCCEEEccCC
Confidence 88887766777777888888888776
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=247.12 Aligned_cols=247 Identities=18% Similarity=0.147 Sum_probs=177.5
Q ss_pred CCcccccCcccceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
|..|.|..-.....|..... ...++.++.|+ ++|++.+..+..|.++++|++|+|++|++.+..+..|.++++|+
T Consensus 36 p~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 36 PSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp CSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence 67789975333334443322 23344566666 77777777777788888888888888887777777788888888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccC-cccccCCccccCCCC
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKN-NLTGEIPSWICNLSS 153 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 153 (486)
+|+|+ +|+++...+..|.. +++|++|++++|.++.++ +..+. +++|++|++++| .++...+..|.++++
T Consensus 116 ~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 116 TLELF-DNRLTTIPNGAFVY--LSKLKELWLRNNPIESIP------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp EEECC-SSCCSSCCTTTSCS--CSSCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred EEECC-CCcCCeeCHhHhhc--cccCceeeCCCCcccccC------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 88888 77777666667777 788888888888777653 23344 677888888874 444344446777888
Q ss_pred CCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEcc
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLR 233 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 233 (486)
|++|++++|+++ .+| .+..++. |++|++++|++++..+..|.++++|++|++++|.+++..+.+|..+++|++|+|+
T Consensus 187 L~~L~L~~n~l~-~~~-~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 187 LRYLNLAMCNLR-EIP-NLTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp CCEEECTTSCCS-SCC-CCTTCSS-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred cCeecCCCCcCc-ccc-ccCCCcc-cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 888888888777 344 3566665 8888888888877777778788888888888888877777777778888888888
Q ss_pred CCccccCCCccccCCCCCCEEEcCcc
Q 048443 234 NNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 234 ~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+|++++..+..|..+++|+.|++++|
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCccChhHhccccCCCEEEcCCC
Confidence 88887777777777788888887776
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.4e-32 Score=273.33 Aligned_cols=328 Identities=16% Similarity=0.095 Sum_probs=158.4
Q ss_pred CCCCCCCCEeeCcCCCCCC----CCcccccCCCCCCeeccCCCCcccccCCchhccccCC----CCcEEEccCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLR----ELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMK----NFSYLNLSKNYFPRFD 115 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~----~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~----~L~~L~Ls~N~l~~~~ 115 (486)
+..+++|++|++++|++.. .++..+..+++|++|+++ +|.+.+..+..+... ++ +|++|++++|.++...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-~n~l~~~~~~~l~~~-l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-SNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-TCCCHHHHHHHHHHT-TCSTTCCCCEEECTTSCCBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-CCcCChHHHHHHHHH-HhhCCCceeEEEccCCCCCHHH
Confidence 4445556666666665543 234445555666666666 555554333333221 33 4666666666554210
Q ss_pred CCCCCCCcccc-cCccCeeecccCcccccCCcccc-----CCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEcc
Q 048443 116 QHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWIC-----NLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 116 ~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~ 185 (486)
. ..++..+. +++|++|++++|.+++..+..+. ..++|++|++++|++++.. +..+..++. |++|+++
T Consensus 102 ~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L~ 178 (461)
T 1z7x_W 102 C--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD-FKELTVS 178 (461)
T ss_dssp H--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT-CCEEECC
T ss_pred H--HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCC-CCEEECc
Confidence 0 00122223 45566666666665533222221 2345666666666555422 333344444 6666666
Q ss_pred CccccccCCcccc-----CCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCccccCC-----CccccCCCCC
Q 048443 186 GKNFFGTTPDTFM-----NGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQINDTF-----PIWLGSLLEL 251 (486)
Q Consensus 186 ~n~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L 251 (486)
+|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 6655443332222 234566666666655532 3444555566666666666554321 1222245566
Q ss_pred CEEEcCccCCCcccc-----CChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcc
Q 048443 252 NILVLIQQLPCFMGK-----LPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKI 326 (486)
Q Consensus 252 ~~L~l~~n~~~~~~~-----ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 326 (486)
+.|+++++ ..+. ++.. +..+++|+.+++++|............ .....
T Consensus 259 ~~L~L~~n---~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~-----------------------~l~~~ 311 (461)
T 1z7x_W 259 RTLWIWEC---GITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGARLLCE-----------------------TLLEP 311 (461)
T ss_dssp CEEECTTS---CCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHH-----------------------HHTST
T ss_pred eEEECcCC---CCCHHHHHHHHHH-HhhCCCcceEECCCCCCchHHHHHHHH-----------------------HhccC
Confidence 66666554 2221 2222 344555555555554211000000000 00001
Q ss_pred cCcccEEEccccccccc----CccchhccCCCCeeeCCCcccCccCchhccC-----CCCCCEEeCCCCC----------
Q 048443 327 PDILKGIILSSNRFDGE----MPTSIANLKGLQVLGLASNNLQGHIPSCLGS-----LTNLESLDLSKNR---------- 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~---------- 387 (486)
.+.|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|+
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 13566667776666643 3444555666777777777666544443332 4566677776666
Q ss_pred -----CCCCCEEeccCCcccc
Q 048443 388 -----LTFLEFFNATHNNLTG 403 (486)
Q Consensus 388 -----l~~L~~L~ls~N~l~~ 403 (486)
+++|++|++++|++++
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHhCCCccEEECCCCCCCH
Confidence 3466667777766653
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.7e-28 Score=235.74 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=178.0
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|+ ++|.+. .+|+.+.++++|++|+|++|.+. .+|..|+.+++|++|+++ +|.++ .+|..+.. +++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls-~n~l~-~lp~~l~~--l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA-RNPLR-ALPASIAS--LNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEE-SCCCC-CCCGGGGG--CTTCCE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECC-CCccc-cCcHHHhc--CcCCCE
Confidence 4455555 666666 67878888888888888888877 778888888888888888 88888 67888888 888888
Q ss_pred EEccCCCCC-CCCC-CCC-CCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 104 LNLSKNYFP-RFDQ-HPT-VLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 104 L~Ls~N~l~-~~~~-l~~-l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
|++++|.+. .+|. +.. ..+..+. +++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+..++. |
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~-L 231 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK-L 231 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTT-C
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCC-C
Confidence 888886554 3332 000 0011122 788888888888888 77888888888888888888888 46667888887 8
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
++|++++|++.+.+|..|..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.+++.+++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887765
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.2e-28 Score=234.94 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=47.2
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~L~ 392 (486)
++|+.|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.+++..|.+..+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 34666667777776677777778888888888888877788888888888888877776654443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=241.02 Aligned_cols=275 Identities=16% Similarity=0.181 Sum_probs=144.8
Q ss_pred CCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 47 LNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 47 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
++.....+.+++++. .+|..+. ++|++|+++ +|.+++..+..+.. +++|++|++++|.++++ .+..+.
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~-~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~ 97 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLS-NNRITYISNSDLQR--CVNLQALVLTSNGINTI------EEDSFS 97 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECT-TSCCCEECTTTTTT--CTTCCEEECTTSCCCEE------CTTTTT
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECC-CCcCcccCHHHhcc--CCCCCEEECCCCccCcc------CHhhcC
Confidence 444455666666643 3343333 356666666 66666555555555 66666666666655543 222233
Q ss_pred -cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCC-ccccCCCCcc
Q 048443 127 -STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP-DTFMNGSDLR 204 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~ 204 (486)
+++|++|++++|++++..+..|.++++|++|++++|+++ +..+ ..|..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-------------------------TLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-------------------------SSCSSCSCTTCTTCC
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-------------------------ccCchhhhccCCCCc
Confidence 455555555555555322223455555555555555554 3222 2344444444
Q ss_pred EEECcCC-ccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhcccccccccc
Q 048443 205 MVDLSHN-LLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283 (486)
Q Consensus 205 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~ 283 (486)
+|++++| .+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++| ....+|...+..
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n---~l~~~~~~~~~~--------- 220 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK---QHILLLEIFVDV--------- 220 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS---CSTTHHHHHHHH---------
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC---ccccchhhhhhh---------
Confidence 4444444 233333344444444444444444444444444444444444444443 122222221111
Q ss_pred ccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccch---hccCCCCeeeCC
Q 048443 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSI---ANLKGLQVLGLA 360 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls 360 (486)
+++|+.|++++|.+++..+..+ .....++.++++
T Consensus 221 -------------------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 221 -------------------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp -------------------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred -------------------------------------------cccccEEECCCCccccccccccccccccchhhccccc
Confidence 2457778888888876544433 235667888888
Q ss_pred CcccCc----cCchhccCCCCCCEEeCCCCCCCCCCEEeccCCccccCCCCC--CCCCCCCCccccCCcCCCC
Q 048443 361 SNNLQG----HIPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQA--NQFPTFGYSSFNGNSRLCG 427 (486)
Q Consensus 361 ~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~~~~~~np~~c~ 427 (486)
++.+.+ .+|..+..+++|++|++++|+++ .+|.. ..+..+..+.+.+||+.|+
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--------------~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK--------------SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC--------------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC--------------ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 888775 46777888888888888877633 22222 2345556666667776665
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.9e-28 Score=229.80 Aligned_cols=243 Identities=20% Similarity=0.215 Sum_probs=169.7
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
++++.+++.++.+|. .+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..++. |++
T Consensus 14 ~~~~c~~~~l~~ip~-------~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-------GI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCT-------TC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCE
T ss_pred eEEEcCcCCcccCCc-------CC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC-CCE
Confidence 456666666665432 11 356677777777776555566667777777777777776655666666665 777
Q ss_pred EEccCcc-ccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 182 LSLQGKN-FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 182 L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
|++++|. +....+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n- 163 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN- 163 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-
Confidence 7777775 55555666777777777777777777665666777777777777777776666666667777777777665
Q ss_pred CCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccc
Q 048443 261 PCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRF 340 (486)
Q Consensus 261 ~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 340 (486)
....+|...|.. +++|+.|++++|.+
T Consensus 164 --~l~~~~~~~~~~----------------------------------------------------l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 164 --RISSVPERAFRG----------------------------------------------------LHSLDRLLLHQNRV 189 (285)
T ss_dssp --CCCEECTTTTTT----------------------------------------------------CTTCCEEECCSSCC
T ss_pred --cccccCHHHhcC----------------------------------------------------ccccCEEECCCCcc
Confidence 233333321111 35688899999999
Q ss_pred cccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC----------CCCEEeccCCccccCCCCC
Q 048443 341 DGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT----------FLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 341 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~L~~L~ls~N~l~~~~p~~ 408 (486)
++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++. .++.+..+.+.+.+..|..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 9888999999999999999999999877778999999999999999843 3455566777777777764
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.8e-27 Score=239.28 Aligned_cols=244 Identities=19% Similarity=0.154 Sum_probs=154.2
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
.+.++.++..+. .+|..+. +++++|+|+ +|.+++..+..|.+ +++|++|+|++|.++.+ .+..+. ++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~------~~~~~~~l~ 123 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLM-ENNIQMIQADTFRH--LHHLEVLQLGRNSIRQI------EVGAFNGLA 123 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECC-SSCCCEECTTTTTT--CTTCCEEECCSSCCCEE------CTTTTTTCT
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECc-CCcCceECHHHcCC--CCCCCEEECCCCccCCc------ChhhccCcc
Confidence 455666655543 3443332 466666666 66666666666666 66666666666666654 223333 56
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccC-ccccccCCccccCCCCccEEE
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG-KNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ 207 (486)
+|++|+|++|++++..+..|..+++|++|++++|+++...+..|..++. |+.|++++ |.+....+..|.++++|++|+
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc-ccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 6666666666666544555666666666666666666444445555655 66666666 333333344566666677777
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.+++ +| .+..+++|++|++++|.+.+..|..|..+
T Consensus 203 L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------------------- 241 (452)
T 3zyi_A 203 LGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL--------------------------------------- 241 (452)
T ss_dssp CTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTC---------------------------------------
T ss_pred CCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCc---------------------------------------
Confidence 77776663 33 35666666777777666665555444433
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
++|+.|++++|++++..+..|..+++|++|+|++|++++.
T Consensus 242 ----------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 242 ----------------------------------------SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp ----------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ----------------------------------------cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 3366666677777767777788888888888888888877
Q ss_pred CchhccCCCCCCEEeCCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+..|..+++|+.|+|++|+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSC
T ss_pred ChHHhccccCCCEEEccCCC
Confidence 77777788888888888887
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=238.59 Aligned_cols=244 Identities=21% Similarity=0.187 Sum_probs=137.0
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
.+.++.++.++. .+|..+. ++++.|+|+ +|++++..+..|.+ +++|++|+|++|.++.+ .+..+. ++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~-~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~i------~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLH-ENQIQIIKVNSFKH--LRHLEILQLSRNHIRTI------EIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECC-SCCCCEECTTTTSS--CSSCCEEECCSSCCCEE------CGGGGTTCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEcc-CCcCCeeCHHHhhC--CCCCCEEECCCCcCCcc------ChhhccCCc
Confidence 344555544432 3333332 445555555 55555555555555 55555555555555443 122233 45
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCc-cccccCCccccCCCCccEEE
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGK-NFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~ 207 (486)
+|++|+|++|+++...+..|..+++|++|++++|.++...+..|..++. |++|++++| .+....+..|.++++|++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc-cCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 5555555555555433344555555555555555555444444555554 555555552 23333333455556666666
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.++ .+| .+..+++|++|++++|.+++..|..|..+
T Consensus 192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------------------- 230 (440)
T 3zyj_A 192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL--------------------------------------- 230 (440)
T ss_dssp CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC---------------------------------------
T ss_pred CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccC---------------------------------------
Confidence 6666655 333 25555666666666666554444433332
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
++|+.|++++|++++..+..|..+++|++|+|++|++++.
T Consensus 231 ----------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 231 ----------------------------------------MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp ----------------------------------------TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred ----------------------------------------ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 3466666667777766677777888888888888888877
Q ss_pred CchhccCCCCCCEEeCCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+..|..+++|+.|+|++|+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSC
T ss_pred ChhHhccccCCCEEEcCCCC
Confidence 77777778888888888777
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.3e-30 Score=263.17 Aligned_cols=363 Identities=17% Similarity=0.114 Sum_probs=260.2
Q ss_pred cCcccceeeeehhccC-------CChhhhhhc-cCCcccc----cCCcCCCCCCCCCEeeCcCCCCCCCCccccc-CCC-
Q 048443 7 SELTRLTILLFYLMTS-------DSPFLDRLQ-RLSDFSG----QIPPSLGNLNQLQWLDLAFNNFLRELPASIG-SLS- 72 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~-------~~~~l~~L~-~~n~~~~----~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~- 72 (486)
..+++++++.+.+... ..+.++.|+ ++|.+++ .++..+..+++|++|+|++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567888877664322 123445555 7777774 4577788899999999999998765554443 455
Q ss_pred ---CCCeeccCCCCcccc----cCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcc-cc-cCccCeeecccCccccc
Q 048443 73 ---SLERLDTFPPMKIHG----NIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT-TL-STKIRHYLISKNNLTGE 143 (486)
Q Consensus 73 ---~L~~L~L~~~n~i~~----~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~-~~-~~~L~~L~Ls~n~l~~~ 143 (486)
+|++|+++ +|.++. .++..+.. +++|++|++++|.++.... .. +... .. .++|++|++++|++++.
T Consensus 83 ~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~-~~-l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 83 PSCKIQKLSLQ-NCCLTGAGCGVLSSTLRT--LPTLQELHLSDNLLGDAGL-QL-LCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TTCCCCEEECT-TSCCBGGGHHHHHHHTTS--CTTCCEEECCSSBCHHHHH-HH-HHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CCCceeEEEcc-CCCCCHHHHHHHHHHHcc--CCceeEEECCCCcCchHHH-HH-HHHHHhcCCCcceEEECCCCCCCHH
Confidence 79999999 999984 56888888 9999999999999863200 00 0000 11 35799999999999864
Q ss_pred ----CCccccCCCCCCEEECcCCcCcccccchhhh-----cCCCCcEEEccCcccccc----CCccccCCCCccEEECcC
Q 048443 144 ----IPSWICNLSSLYVLDLSDNNLSGELLQCLGN-----FSGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDLSH 210 (486)
Q Consensus 144 ----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~-----~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~ 210 (486)
++..+..+++|++|++++|.+++..+..+.. .+. |++|++++|.+++. ++..+..+++|++|++++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ-LEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC-CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC-ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 3566777899999999999998655554443 334 99999999999864 466677889999999999
Q ss_pred Ccccccc-----CccCcCCCCCCEEEccCCccccC----CCccccCCCCCCEEEcCccCCCccccCChhhh-----hccc
Q 048443 211 NLLQGKI-----PKSLANCAVLEISDLRNNQINDT----FPIWLGSLLELNILVLIQQLPCFMGKLPSKYF-----QCWN 276 (486)
Q Consensus 211 N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~-----~~l~ 276 (486)
|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|+.|++++|. .+..+...+ ...+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE---LGDEGARLLCETLLEPGC 313 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC---CHHHHHHHHHHHHTSTTC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC---CchHHHHHHHHHhccCCc
Confidence 9987532 33344689999999999999864 56677789999999999983 322221112 2235
Q ss_pred cccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhc-----c
Q 048443 277 AMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIAN-----L 351 (486)
Q Consensus 277 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-----l 351 (486)
+|+.+++++|.......... .......++|+.|++++|.+++..+..+.. .
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l------------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHF------------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHH------------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred cceeeEcCCCCCchHHHHHH------------------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 77888777763211100000 000112477999999999998765555543 6
Q ss_pred CCCCeeeCCCcccCc----cCchhccCCCCCCEEeCCCCCCC----------------CCCEEeccCCccc
Q 048443 352 KGLQVLGLASNNLQG----HIPSCLGSLTNLESLDLSKNRLT----------------FLEFFNATHNNLT 402 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~----------------~L~~L~ls~N~l~ 402 (486)
++|++|++++|.+++ .+|..+..+++|++|++++|+++ .|+.|++.++...
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 799999999999996 67888889999999999999943 5777777776654
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.2e-29 Score=240.57 Aligned_cols=249 Identities=20% Similarity=0.275 Sum_probs=126.6
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCccc-ccCCchhc-------cccCCCCcEEEccCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIH-GNIPKWLL-------NPSMKNFSYLNLSKNYFPRFD 115 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~-~~~p~~~~-------~~~l~~L~~L~Ls~N~l~~~~ 115 (486)
+...++|+.|++++|.+ .+|..+... |++|+++ +|.++ ..+|..+. . +++|++|++++|.++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~-~n~l~~~~~~~~~~~~~~~~~~--l~~L~~L~L~~n~l~--- 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLK-RLTVRAARIPSRILFGALRVLG--ISGLQELTLENLEVT--- 108 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCC-EEEEEEEECBHHHHHHHHHHHT--TSCCCEEEEEEEBCB---
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--Hhhcccc-cccccCCCcCHHHHHHHHHhcC--cCCccEEEccCCccc---
Confidence 44556677777777776 555555433 7777777 67663 34454443 4 555555555555554
Q ss_pred CCCCCCCcccccCccCeeecccCcccccCCccc--cCCCCCCEEECcCCcCcccccchhhhc-----CCCCcEEEccCcc
Q 048443 116 QHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWI--CNLSSLYVLDLSDNNLSGELLQCLGNF-----SGGLSVLSLQGKN 188 (486)
Q Consensus 116 ~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~i~~~~~~~l~~~-----~~~L~~L~L~~n~ 188 (486)
+.+|..+ ..+++|++|++++|++++. |..+..+ +. |++|++++|+
T Consensus 109 --------------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~-L~~L~L~~N~ 160 (312)
T 1wwl_A 109 --------------------------GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPG-LKVLSIAQAH 160 (312)
T ss_dssp --------------------------SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTT-CCEEEEESCS
T ss_pred --------------------------chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCC-CcEEEeeCCC
Confidence 3333332 4444444444444444433 4444433 32 4444444444
Q ss_pred ccccCCccccCCCCccEEECcCCccccc--cCccC--cCCCCCCEEEccCCccccC---CCccccCCCCCCEEEcCccCC
Q 048443 189 FFGTTPDTFMNGSDLRMVDLSHNLLQGK--IPKSL--ANCAVLEISDLRNNQINDT---FPIWLGSLLELNILVLIQQLP 261 (486)
Q Consensus 189 i~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~n~~ 261 (486)
+.+..+..|..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++. ....+..+++|+.|++++|.
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~- 239 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS- 239 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-
T ss_pred CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-
Confidence 4444444444444555555555544332 11122 4444555555555544411 11222344455555554442
Q ss_pred CccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccc
Q 048443 262 CFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFD 341 (486)
Q Consensus 262 ~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 341 (486)
+.+..|...+ ..+++|+.|++++|.++
T Consensus 240 -l~~~~~~~~~----------------------------------------------------~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 240 -LRDAAGAPSC----------------------------------------------------DWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp -CCSSCCCSCC----------------------------------------------------CCCTTCCEEECTTSCCS
T ss_pred -CCcccchhhh----------------------------------------------------hhcCCCCEEECCCCccC
Confidence 1111111000 00245777777777777
Q ss_pred ccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 342 GEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 342 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
.+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus 267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 -QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 5666554 6777777777777754 44 667777777777766643
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2e-29 Score=241.38 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
.+..+++|++|+|++|++.+..|..|..+++|++|+++ +|.+++..+ +.. +++|++|++++|.+++++.
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~--l~~L~~L~Ls~n~l~~l~~------ 97 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LES--LSTLRTLDLNNNYVQELLV------ 97 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECT-TSCCEEEEE--ETT--CTTCCEEECCSSEEEEEEE------
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECC-CCcCCcchh--hhh--cCCCCEEECcCCccccccC------
Confidence 33445556666666666555555556666666666666 555554433 444 5555555555555544321
Q ss_pred cccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc-CCC
Q 048443 123 WTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM-NGS 201 (486)
Q Consensus 123 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~ 201 (486)
.++|++|++++|++++..+. .+++|++|++++|++++..+..+..++. |++|++++|.+.+..+..+. .++
T Consensus 98 ----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp ----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCcccHHHHhhccC
Confidence 24455555555555433222 1334444444444444433334444443 44444444444443333332 334
Q ss_pred CccEEECcCCccc
Q 048443 202 DLRMVDLSHNLLQ 214 (486)
Q Consensus 202 ~L~~L~L~~N~l~ 214 (486)
+|++|++++|.++
T Consensus 170 ~L~~L~L~~N~l~ 182 (317)
T 3o53_A 170 TLEHLNLQYNFIY 182 (317)
T ss_dssp TCCEEECTTSCCC
T ss_pred cCCEEECCCCcCc
Confidence 4444444444444
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.6e-29 Score=238.33 Aligned_cols=237 Identities=20% Similarity=0.177 Sum_probs=180.7
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCccc-ccCCcccc-------CCCCCCEEECcCCcCccccc
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLT-GEIPSWIC-------NLSSLYVLDLSDNNLSGELL 169 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~N~i~~~~~ 169 (486)
.++|+.|++++|.+ . +|..+. ..|++|++++|.++ ..+|..+. ++++|++|++++|++++..|
T Consensus 42 ~~~L~~l~l~~n~l-~-------~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-A-------DLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEECTTHHHHCCTT-C-------CCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCCceeEeeccccc-c-------cHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 44555555555555 3 232222 23777888888884 35666555 79999999999999998888
Q ss_pred chh--hhcCCCCcEEEccCccccccCCccccCC-----CCccEEECcCCccccccCccCcCCCCCCEEEccCCccccC--
Q 048443 170 QCL--GNFSGGLSVLSLQGKNFFGTTPDTFMNG-----SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT-- 240 (486)
Q Consensus 170 ~~l--~~~~~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-- 240 (486)
..+ ..++. |++|++++|.+++. |..+..+ ++|++|++++|.+++..|..|+.+++|++|++++|++.+.
T Consensus 113 ~~~~~~~l~~-L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPD-LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCC-CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCC-ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 876 77777 99999999999987 7777766 8999999999999988889999999999999999998764
Q ss_pred CCccc--cCCCCCCEEEcCccCCCccc---cCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEee
Q 048443 241 FPIWL--GSLLELNILVLIQQLPCFMG---KLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMS 315 (486)
Q Consensus 241 ~~~~~--~~l~~L~~L~l~~n~~~~~~---~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (486)
.+..+ ..+++|+.|++++|. .. .++...+..
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~~~----------------------------------------- 226 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAG---METPSGVCSALAAA----------------------------------------- 226 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSC---CCCHHHHHHHHHHT-----------------------------------------
T ss_pred HHHHHHhccCCCCCEEECCCCc---CcchHHHHHHHHhc-----------------------------------------
Confidence 23334 889999999999983 32 222221111
Q ss_pred cCCCccccCcccCcccEEEcccccccccCc-cchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCC------
Q 048443 316 NEGQMMTHDKIPDILKGIILSSNRFDGEMP-TSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL------ 388 (486)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l------ 388 (486)
+++|+.|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++
T Consensus 227 -----------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~~ 292 (312)
T 1wwl_A 227 -----------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSP 292 (312)
T ss_dssp -----------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCCT
T ss_pred -----------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChhH
Confidence 3569999999999997664 45677899999999999999 7777665 7888888888873
Q ss_pred ---CCCCEEeccCCcccc
Q 048443 389 ---TFLEFFNATHNNLTG 403 (486)
Q Consensus 389 ---~~L~~L~ls~N~l~~ 403 (486)
++|++|++++|++++
T Consensus 293 ~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 293 DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCEEEEEECTTCTTTC
T ss_pred hhCCCCCEEeccCCCCCC
Confidence 345566666666653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2e-28 Score=234.45 Aligned_cols=236 Identities=21% Similarity=0.118 Sum_probs=136.4
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S 127 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~ 127 (486)
.++..+++.+.+.......+..+++|++|+++ +|.+++..|..+.. +++|++|++++|.++.++ . +. +
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~-------~-~~~l 79 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLS-GNPLSQISAADLAP--FTKLELLNLSSNVLYETL-------D-LESL 79 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECT-TSCCCCCCHHHHTT--CTTCCEEECTTSCCEEEE-------E-ETTC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECc-CCccCcCCHHHhhC--CCcCCEEECCCCcCCcch-------h-hhhc
Confidence 34555666666544444555556667777777 66676666666666 666666666666665431 1 22 5
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++|++|++++|++++.. ..++|++|++++|++++..+.. ++. |++|++++|++++..+..+..+++|++|+
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQG-KKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSS-CEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCC-CCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 56666666666665321 2255666666666665433322 233 55566665555555555555555555555
Q ss_pred CcCCccccccCccC-cCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccc
Q 048443 208 LSHNLLQGKIPKSL-ANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 208 L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
+++|.+++..+..+ ..+++|++|++++|.+++..+ ...
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~--------------------------------------- 189 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVV--------------------------------------- 189 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCC---------------------------------------
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccc---------------------------------------
Confidence 55555554444443 245555555555555543211 111
Q ss_pred hhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc
Q 048443 287 RYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
+++|+.|++++|.+++ +|..+..+++|++|++++|+++
T Consensus 190 ----------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~- 227 (317)
T 3o53_A 190 ----------------------------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227 (317)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-
T ss_pred ----------------------------------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-
Confidence 2457777777777773 4444777777777777777777
Q ss_pred cCchhccCCCCCCEEeCCCCC
Q 048443 367 HIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 367 ~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+|..+..+++|+.|++++|+
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCC
T ss_pred chhhHhhcCCCCCEEEccCCC
Confidence 456666777777777777776
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.4e-25 Score=231.73 Aligned_cols=250 Identities=26% Similarity=0.322 Sum_probs=166.7
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
++|+++ .+|..+. ++|++|++++|++.. +|. .+++|++|+++ +|++++ +|. . +++|++|++++|.+
T Consensus 48 s~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls-~N~l~~-lp~---~--l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 48 GESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVS-GNQLTS-LPV---L--PPGLLELSIFSNPL 113 (622)
T ss_dssp CSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEEC-SCCCSC-CCC---C--CTTCCEEEECSCCC
T ss_pred cCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcC-CCcCCc-CCC---C--CCCCCEEECcCCcC
Confidence 445555 5665555 678888888887664 343 46778888888 777774 444 3 77788888888877
Q ss_pred CCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc
Q 048443 112 PRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
+.+|. .+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .. +|+.|++++|.+++
T Consensus 114 ~~l~~---------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~-~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 114 THLPA---------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PS-ELCKLWAYNNQLTS 175 (622)
T ss_dssp CCCCC---------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC---CT-TCCEEECCSSCCSC
T ss_pred CCCCC---------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc---cC-CCCEEECCCCCCCC
Confidence 77543 24677888888888773 4543 4777888888887773 3332 22 37778888887765
Q ss_pred cCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhh
Q 048443 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKY 271 (486)
Q Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~ 271 (486)
. | ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++. +|. .+++|+.|++++| .+..+|.
T Consensus 176 l-~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N---~L~~lp~-- 238 (622)
T 3g06_A 176 L-P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGN---RLTSLPV-- 238 (622)
T ss_dssp C-C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSS---CCSCCCC--
T ss_pred C-c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCC---ccCcCCC--
Confidence 3 3 345677788888887773 4432 4677778888877763 332 2366777777766 2222331
Q ss_pred hhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhcc
Q 048443 272 FQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANL 351 (486)
Q Consensus 272 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l 351 (486)
.+++|+.|++++|.|+ .+|. .+
T Consensus 239 ------------------------------------------------------~l~~L~~L~Ls~N~L~-~lp~---~~ 260 (622)
T 3g06_A 239 ------------------------------------------------------LPSELKELMVSGNRLT-SLPM---LP 260 (622)
T ss_dssp ------------------------------------------------------CCTTCCEEECCSSCCS-CCCC---CC
T ss_pred ------------------------------------------------------CCCcCcEEECCCCCCC-cCCc---cc
Confidence 1356888888888887 4555 56
Q ss_pred CCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
++|+.|+|++|+|+ .+|..|..+++|+.|+|++|+++
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 77888888888888 66777888888888888877743
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.5e-28 Score=244.07 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=108.8
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
...+++|++|+|++|.+.+..|..|..+++|++|+|+ +|.+++..| +.. +++|++|+|++|.++.+|.
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~------- 97 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LES--LSTLRTLDLNNNYVQELLV------- 97 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECT-TSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEE-------
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEee-CCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCC-------
Confidence 3445588888888888888777888888888888888 888876655 666 7788888888877765432
Q ss_pred ccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc-CCCC
Q 048443 124 TTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM-NGSD 202 (486)
Q Consensus 124 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~ 202 (486)
.++|++|++++|.+++..+. .+++|+.|++++|.+++..|..++.++. |+.|++++|.+++..|..+. .+++
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCc
Confidence 35666666666666644332 2455666666666666555555555554 55555555555555554443 4555
Q ss_pred ccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 203 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|++|+|++|.+++..+ ...+++|++|++++|.++
T Consensus 171 L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC
T ss_pred ccEEecCCCccccccc--cccCCCCCEEECCCCCCC
Confidence 5555555555553311 223455555555555544
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.6e-25 Score=229.66 Aligned_cols=252 Identities=24% Similarity=0.269 Sum_probs=203.6
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccC
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST 128 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~ 128 (486)
+++.|++++|++. .+|..+. ++|++|+++ +|.++. +|. . +++|++|+|++|+++.+|. .++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~-~N~l~~-lp~---~--l~~L~~L~Ls~N~l~~lp~---------~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIP-DNNLTS-LPA---L--PPELRTLEVSGNQLTSLPV---------LPP 101 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEEC-SCCCSC-CCC---C--CTTCCEEEECSCCCSCCCC---------CCT
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEec-CCCCCC-CCC---c--CCCCCEEEcCCCcCCcCCC---------CCC
Confidence 5899999999976 6676665 899999999 999984 555 4 8999999999999998653 368
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|++++|++++ +|. .+++|++|++++|++++ +|..+ ++ |++|++++|.+++. |. .+++|+.|++
T Consensus 102 ~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~l---~~-L~~L~Ls~N~l~~l-~~---~~~~L~~L~L 168 (622)
T 3g06_A 102 GLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVLP---PG-LQELSVSDNQLASL-PA---LPSELCKLWA 168 (622)
T ss_dssp TCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCCC---TT-CCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred CCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCCC---CC-CCEEECcCCcCCCc-CC---ccCCCCEEEC
Confidence 99999999999994 554 57899999999999984 55543 44 99999999999764 33 3478999999
Q ss_pred cCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchh
Q 048443 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~ 288 (486)
++|.+++ +| ..+++|++|++++|.+++ +|. .+++|+.|++++| ....+|.
T Consensus 169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N---~l~~l~~------------------- 218 (622)
T 3g06_A 169 YNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNN---RLTSLPA------------------- 218 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS---CCSSCCC-------------------
T ss_pred CCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCC---cccccCC-------------------
Confidence 9999984 56 457899999999999985 333 2478888888887 2333332
Q ss_pred ccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccC
Q 048443 289 MENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHI 368 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 368 (486)
.+++|+.|++++|.+++ +| ..+++|++|++++|+|+ .+
T Consensus 219 -------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 219 -------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp -------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred -------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence 13569999999999994 66 45689999999999999 55
Q ss_pred chhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCC
Q 048443 369 PSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 369 ~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~ 407 (486)
|. .+++|+.|+|++|+ +++|+.|++++|++++.+|.
T Consensus 257 p~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred Cc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 55 67899999999999 56789999999999987765
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.1e-25 Score=209.11 Aligned_cols=200 Identities=20% Similarity=0.132 Sum_probs=89.5
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S 127 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~ 127 (486)
+|++|++++|++.+..+..|.++++|++|+++ +|.+++..+..+.. +++|++|++++|.++.+ .+..+. +
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~------~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQS--LSHLSTLILTGNPIQSL------ALGAFSGL 99 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTT--CTTCCEEECTTCCCCEE------CTTTTTTC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccC--CcCCCEEECCCCccCcc------ChhhhcCC
Confidence 44444444444444444444444444444444 44444444444444 44444444444444433 112222 4
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCccc-ccchhhhcCCCCcEEEccCccccccCCccccCCCCcc--
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGE-LLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR-- 204 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~-- 204 (486)
++|++|++++|++++..+..+..+++|++|++++|.+++. +|..+..++. |++|++++|++++..+..|..+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-CCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 4444444444444433333444444444444444444432 2444444443 44455544444444444443333333
Q ss_pred --EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 205 --MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 205 --~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+|++++|.+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 179 ~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 44555555443322222 2224555555555554444444444555555555444
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.6e-25 Score=204.56 Aligned_cols=193 Identities=18% Similarity=0.186 Sum_probs=141.8
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCC
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
++.++ .+|..+. +++++|++++|++.+..+..|.++++|++|+++ +|.++...+..|.. +++|++|++++|.++
T Consensus 25 ~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~--l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 25 SKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKE--LKNLETLWVTDNKLQ 98 (270)
T ss_dssp TSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSS--CTTCCEEECCSSCCC
T ss_pred CCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcC--CCCCCEEECCCCcCC
Confidence 44444 3555554 578888888888877777788888888888888 88888666666667 888888888888887
Q ss_pred CCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccc
Q 048443 113 RFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 113 ~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
.+| +..+. +++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..++. |++|++++|.+++
T Consensus 99 ~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 99 ALP------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-LKELRLYNNQLKR 171 (270)
T ss_dssp CCC------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCSC
T ss_pred cCC------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc-cceeEecCCcCcE
Confidence 753 23334 677888888888887666667777888888888888887555555666766 7888888777777
Q ss_pred cCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 192 TTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 66666777777777777777777555556777777777777777765
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.3e-25 Score=205.91 Aligned_cols=209 Identities=17% Similarity=0.133 Sum_probs=183.9
Q ss_pred CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCC
Q 048443 22 SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKN 100 (486)
Q Consensus 22 ~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~ 100 (486)
..++.++.|+ ++|.+++..+..|.++++|++|++++|++.+..+..|..+++|++|+++ +|.+++..+..+.. +++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~ 101 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSG--LSS 101 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTT--CTT
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcC--Ccc
Confidence 3455688888 8899998888899999999999999999998888899999999999999 99999988899999 999
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCccccc-CCccccCCCCCCEEECcCCcCcccccchhhhcCCC
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGE-IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGG 178 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~ 178 (486)
|++|++++|.++.++. ..+. +++|++|++++|.+++. +|..|..+++|++|++++|++++..+..+..+..
T Consensus 102 L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~- 174 (276)
T 2z62_A 102 LQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ- 174 (276)
T ss_dssp CCEEECTTSCCCCSTT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-
T ss_pred ccEEECCCCCccccCc------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-
Confidence 9999999999998643 3344 89999999999999863 6899999999999999999999877778887776
Q ss_pred Cc----EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCC
Q 048443 179 LS----VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241 (486)
Q Consensus 179 L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 241 (486)
|+ .|++++|.+.+..+..+.. .+|++|++++|.+++..+..|..+++|++|++++|++....
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 77 8999999999877766654 48999999999999776677899999999999999998543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=226.98 Aligned_cols=237 Identities=19% Similarity=0.116 Sum_probs=200.1
Q ss_pred CChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCC
Q 048443 23 DSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101 (486)
Q Consensus 23 ~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L 101 (486)
.++.++.|+ ++|.+++..|..|+.+++|++|+|++|.+.+..| |..+++|++|+++ +|.+++.. . .++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls-~N~l~~l~-----~--~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN-NNYVQELL-----V--GPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECC-SSEEEEEE-----E--CTTC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEec-CCcCCCCC-----C--CCCc
Confidence 345677777 8899999888999999999999999999887665 9999999999999 99998643 3 6899
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhh-hcCCCCc
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLG-NFSGGLS 180 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~-~~~~~L~ 180 (486)
++|++++|.++.++. . .+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .++. |+
T Consensus 102 ~~L~L~~N~l~~~~~------~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~-L~ 172 (487)
T 3oja_A 102 ETLHAANNNISRVSC------S--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LE 172 (487)
T ss_dssp CEEECCSSCCCCEEE------C--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CC
T ss_pred CEEECcCCcCCCCCc------c--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc-cc
Confidence 999999999987632 1 168999999999999988888999999999999999999988888886 6776 99
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
.|++++|.+++..+ +..+++|+.|+|++|.+++. |..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.
T Consensus 173 ~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 173 HLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred EEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence 99999999988743 44689999999999999964 5558999999999999999986 67779999999999999984
Q ss_pred CCccccCChhhhhccccccccccc
Q 048443 261 PCFMGKLPSKYFQCWNAMKFANSS 284 (486)
Q Consensus 261 ~~~~~~ip~~~~~~l~~L~~l~~~ 284 (486)
.....+...+..++.++.+++.
T Consensus 249 --l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 --FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp --BCHHHHHHHHTTCHHHHHHHHH
T ss_pred --CcCcchHHHHHhCCCCcEEecc
Confidence 3322333446677777776665
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=9.9e-25 Score=199.98 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=156.7
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc-ccccCCchhccccCCCCcEEEccC-CCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK-IHGNIPKWLLNPSMKNFSYLNLSK-NYFPRFDQ 116 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~-i~~~~p~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 116 (486)
.+|. +. ++|++|++++|++.+..+..|.++++|++|+++ +|. ++...+..|.. +++|++|++++ |.++.++
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~~l~~i~~~~f~~--l~~L~~L~l~~~n~l~~i~- 97 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYN--LSKVTHIEIRNTRNLTYID- 97 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEE-CCSSCCEECTTTEES--CTTCCEEEEEEETTCCEEC-
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCC-CCCCcceeCHhHcCC--CcCCcEEECCCCCCeeEcC-
Confidence 3555 43 378888998888887777788888889999988 886 77777777877 88889999888 8888763
Q ss_pred CCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC---EEECcCC-cCcccccchhhhcCCCCc-EEEccCcccc
Q 048443 117 HPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY---VLDLSDN-NLSGELLQCLGNFSGGLS-VLSLQGKNFF 190 (486)
Q Consensus 117 l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~Ls~N-~i~~~~~~~l~~~~~~L~-~L~L~~n~i~ 190 (486)
+..+. +++|++|++++|++++ +|. |..+++|+ +|++++| .+++..+..|..++. |+ +|++++|+++
T Consensus 98 -----~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~-L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 98 -----PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN-ETLTLKLYNNGFT 169 (239)
T ss_dssp -----TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS-SEEEEECCSCCCC
T ss_pred -----HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc-ceeEEEcCCCCCc
Confidence 23444 7888888888888884 665 77888887 8889888 888666666777776 88 8899888888
Q ss_pred ccCCccccCCCCccEEECcCCc-cccccCccCcCC-CCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNL-LQGKIPKSLANC-AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
...+..|.. ++|++|++++|. +++..+..|..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 170 ~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 655555655 788999999994 886667778888 8899999999988754443 5677888877664
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.2e-23 Score=196.47 Aligned_cols=200 Identities=19% Similarity=0.186 Sum_probs=176.7
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.+.+.++++++++.. +|..+. +++++|+++ +|.+++..+..|.. +++|++|++++|.++.++ +..+.
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~i~------~~~~~~ 83 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQ-SNKLSSLPSKAFHR--LTKLRLLYLNDNKLQTLP------AGIFKE 83 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECC-SSCCSCCCTTSSSS--CTTCCEEECCSSCCSCCC------TTTTSS
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECc-CCCCCeeCHHHhcC--CCCCCEEECCCCccCeeC------hhhhcC
Confidence 357899999999764 565554 689999999 99999888888988 999999999999999864 23344
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++. |++|++++|.+.+..+..|..+++|++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC-CCEEECCCCcCCccCHhHccCCccccee
Confidence 899999999999999777778899999999999999999877777888887 9999999999998888889999999999
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 999999997777789999999999999999998777789999999999999973
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.4e-24 Score=201.43 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=93.1
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
...+++|+.|++++|.+... ..+..+++|++|+++ +|.+++. ..+.. +++|++|++++|.++.++ +.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~-~n~l~~~--~~l~~--l~~L~~L~L~~n~l~~~~------~~ 103 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALG-GNKLHDI--SALKE--LTNLTYLILTGNQLQSLP------NG 103 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECT-TSCCCCC--GGGTT--CTTCCEEECTTSCCCCCC------TT
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECC-CCCCCCc--hhhcC--CCCCCEEECCCCccCccC------hh
Confidence 44566677777766665432 245566666666666 6666542 34545 666666666666655542 22
Q ss_pred ccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 124 TTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 124 ~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
.+. +++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..++. |++|++++|++++..+..|..+++
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-LTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-CCEEECCCCCcCccCHHHhcCCcc
Confidence 222 455555555555555444444555555555555555555433333444443 555555555554444444444445
Q ss_pred ccEEECcCCccccccCccCcCCCCCCEEEccCCcc
Q 048443 203 LRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQI 237 (486)
Q Consensus 203 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 237 (486)
|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 55555555544444444444444444444444443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.3e-23 Score=197.90 Aligned_cols=200 Identities=20% Similarity=0.171 Sum_probs=106.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPW 123 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~ 123 (486)
++++++++.+++++|++.. +|..+. +++++|+++ +|.+++..+..+.. +++|++|++++|.++.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~-~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLS-ENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQV------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECT-TSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEEC-------
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcC-CCcCCccCHHHhhc--CCCCCEEECCCCccCcccC-------
Confidence 3445555555555555432 232222 455555555 55555555555555 5555555555555554322
Q ss_pred ccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCc
Q 048443 124 TTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDL 203 (486)
Q Consensus 124 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 203 (486)
...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..++. |++|++++|++++..+..|..+++|
T Consensus 73 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-CCEEECCCCCCCccChhhcccccCC
Confidence 111455555555555555 44555555555555555555555444445555554 5555555555555555555555556
Q ss_pred cEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 204 RMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 204 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+.|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.+++++|
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 66666666555443444455556666666666555 34444455555666665554
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.3e-23 Score=198.07 Aligned_cols=190 Identities=21% Similarity=0.152 Sum_probs=167.3
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
+++.++ .+|..+. ++++.|+|++|++.+..+..|..+++|++|+++ +|.+++..+. .. +++|++|++++|++
T Consensus 18 ~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~--~~--l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 18 DKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQVD--GT--LPVLGTLDLSHNQL 89 (290)
T ss_dssp TTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECT-TSCCCEEECC--SC--CTTCCEEECCSSCC
T ss_pred CCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECC-CCccCcccCC--CC--CCcCCEEECCCCcC
Confidence 455555 4666665 689999999999999889999999999999999 9999976554 45 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.+| ..+. +++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++ |+.|++++|+++
T Consensus 90 ~~l~-------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 161 (290)
T 1p9a_G 90 QSLP-------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLT 161 (290)
T ss_dssp SSCC-------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCS
T ss_pred CcCc-------hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-CCEEECCCCcCC
Confidence 9854 3444 899999999999999777788999999999999999999776677788887 999999999999
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+..+..|..+++|++|++++|.++ .+|..+....+|+.+++++|++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 888888899999999999999999 77888888999999999999986
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7.2e-24 Score=198.11 Aligned_cols=198 Identities=20% Similarity=0.232 Sum_probs=124.9
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|.++ .++ .+..+++|++|++++|.+++ + ..+..++. |++|++++|.+++..+..|..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTN-LTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCC-CCEEECCCCccCccChhHhcCCcCCCEE
Confidence 444555555555544 222 34555555555555555553 1 24444444 5555555555555555555555666666
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQL 286 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~ 286 (486)
++++|.+++..+..|..+++|++|++++|.+++..+..+..+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------------- 156 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-------------------------------------- 156 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------------------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC--------------------------------------
Confidence 666666654444455556666666666665554333332222
Q ss_pred hhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc
Q 048443 287 RYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
++|+.|++++|++++..+..+..+++|++|++++|++++
T Consensus 157 -----------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 157 -----------------------------------------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp -----------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred -----------------------------------------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 346666677777776666667778888888888888887
Q ss_pred cCchhccCCCCCCEEeCCCCC----CCCCCEEeccCCccccCCCCC
Q 048443 367 HIPSCLGSLTNLESLDLSKNR----LTFLEFFNATHNNLTGPIPQA 408 (486)
Q Consensus 367 ~~~~~~~~l~~L~~L~Ls~N~----l~~L~~L~ls~N~l~~~~p~~ 408 (486)
..+..+..+++|++|++++|+ ++.|+.++++.|.++|.+|..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred cCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCc
Confidence 777777888888888888887 567889999999999999974
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.5e-25 Score=231.67 Aligned_cols=347 Identities=12% Similarity=0.002 Sum_probs=192.6
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccC-CC-CCCeeccCCCCc-cccc-CCchhccccCCCCcEEEccCCCCCCCCCCCCCC
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGS-LS-SLERLDTFPPMK-IHGN-IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~-l~-~L~~L~L~~~n~-i~~~-~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
.+++|++|+|++|.+.+..+..+.. ++ +|++|+++ ++. +... ++..... +++|++|+|++|.++.... ..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~-~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~~~~~~~--~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD-KCSGFTTDGLLSIVTH--CRKIKTLLMEESSFSEKDG--KWL 184 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE-SCEEEEHHHHHHHHHH--CTTCSEEECTTCEEECCCS--HHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc-CCCCcCHHHHHHHHhh--CCCCCEEECccccccCcch--hHH
Confidence 5778888888888776665555555 33 48888887 554 2211 2222335 7888888888887654210 000
Q ss_pred Ccccc-cCccCeeecccCcccc----cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc---ccC
Q 048443 122 PWTTL-STKIRHYLISKNNLTG----EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF---GTT 193 (486)
Q Consensus 122 p~~~~-~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~---~~~ 193 (486)
+.... +++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..++. |++|+++..... ...
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAAN-LEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTT-CCEEEECBCCCCTTCTTS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhH-HHhhcccccccccchHHH
Confidence 00112 6788888888888762 334445677888888888888774 5667777776 888888753222 122
Q ss_pred CccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCC-ccccCCCCCCEEEcCccCCCccccCChhhh
Q 048443 194 PDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP-IWLGSLLELNILVLIQQLPCFMGKLPSKYF 272 (486)
Q Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~ 272 (486)
...+..+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|+.|+++++ .........+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~---~~~~~l~~~~ 338 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV---IGDRGLEVLA 338 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG---GHHHHHHHHH
T ss_pred HHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc---cCHHHHHHHH
Confidence 334455666666666665333 455555666666677766666543322 22455666666666532 2221222223
Q ss_pred hcccccccccccc----------chhcccc------------ccccc-----ccc---ccccCCCCcceEEee----cCC
Q 048443 273 QCWNAMKFANSSQ----------LRYMENF------------LSSYF-----SFD---FYRYFPQNDYSITMS----NEG 318 (486)
Q Consensus 273 ~~l~~L~~l~~~~----------~~~~~~~------------~~~~~-----~~~---~~~~~~~~~~~l~~~----~~~ 318 (486)
..+++|+.+++++ +..+... ....+ ... .+....+.+..++++ .+.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 4455555555552 1111000 00000 000 000112345556664 222
Q ss_pred Ccccc--------CcccCcccEEEccccc--ccccCccchh-ccCCCCeeeCCCcccCc-cCchhccCCCCCCEEeCCCC
Q 048443 319 QMMTH--------DKIPDILKGIILSSNR--FDGEMPTSIA-NLKGLQVLGLASNNLQG-HIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 319 ~~~~~--------~~~~~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N 386 (486)
+.... ...+++|+.|++++|. +++..+..+. .+++|++|++++|++++ .++..+.++++|++|++++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 22210 1125667777776432 5544444333 36777778887777765 23444566777888888877
Q ss_pred C------------CCCCCEEeccCCcccc
Q 048443 387 R------------LTFLEFFNATHNNLTG 403 (486)
Q Consensus 387 ~------------l~~L~~L~ls~N~l~~ 403 (486)
+ +++|++|++++|+++.
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6 5677788888887664
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.4e-24 Score=208.98 Aligned_cols=199 Identities=20% Similarity=0.169 Sum_probs=99.7
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCc----ccccCCC-CCCeeccCCCCcccccCCchhccccC-----CCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELP----ASIGSLS-SLERLDTFPPMKIHGNIPKWLLNPSM-----KNF 101 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~-~L~~L~L~~~n~i~~~~p~~~~~~~l-----~~L 101 (486)
+.|++++.+|..+...++|++|+|++|.+.+..+ ..|..++ +|++|+++ +|.+++..+..+.. + ++|
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~--~l~~~~~~L 82 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS-GNSLGFKNSDELVQ--ILAAIPANV 82 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC-SSCGGGSCHHHHHH--HHHTSCTTC
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc-CCCCCHHHHHHHHH--HHhccCCCc
Confidence 4456666666555555556666666666655555 5556666 66666666 66666655555544 3 566
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-----c-CccCeeecccCcccccCCcccc----C-CCCCCEEECcCCcCccccc-
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-----S-TKIRHYLISKNNLTGEIPSWIC----N-LSSLYVLDLSDNNLSGELL- 169 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-----~-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~Ls~N~i~~~~~- 169 (486)
++|+|++|.++.. .+..+. . ++|++|++++|++++..+..+. . .++|++|++++|.+++..+
T Consensus 83 ~~L~Ls~n~l~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYK------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp CEEECCSSCGGGS------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred cEEECcCCcCChH------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 6666666665542 111111 1 4556666666655543332222 2 1355555555555553222
Q ss_pred ---chhhhcCCCCcEEEccCccccccCCccc----cCC-CCccEEECcCCccccc----cCccCcC-CCCCCEEEccCCc
Q 048443 170 ---QCLGNFSGGLSVLSLQGKNFFGTTPDTF----MNG-SDLRMVDLSHNLLQGK----IPKSLAN-CAVLEISDLRNNQ 236 (486)
Q Consensus 170 ---~~l~~~~~~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~ 236 (486)
..+...+.+|++|++++|++++..+..+ ... ++|++|+|++|.+++. ++..+.. .++|++|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2222333125555555555554443222 222 3555555555555431 2223333 2355555555555
Q ss_pred ccc
Q 048443 237 IND 239 (486)
Q Consensus 237 l~~ 239 (486)
+.+
T Consensus 237 l~~ 239 (362)
T 3goz_A 237 LHG 239 (362)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.6e-24 Score=209.72 Aligned_cols=199 Identities=17% Similarity=0.101 Sum_probs=137.8
Q ss_pred EeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCC----chhccccCC-CCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 52 WLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIP----KWLLNPSMK-NFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 52 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p----~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
.+++++|++.+.+|..+...++|++|+++ +|.+++..+ ..+.. ++ +|++|+|++|.++.. .+..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~------~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFK------NSDELV 72 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGS------CHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHH------HHHHHH
Confidence 46788999888888877777779999999 999987776 66777 77 899999999988764 222232
Q ss_pred -c-----CccCeeecccCcccccCCcc----ccCC-CCCCEEECcCCcCcccccchhhhc----CCCCcEEEccCccccc
Q 048443 127 -S-----TKIRHYLISKNNLTGEIPSW----ICNL-SSLYVLDLSDNNLSGELLQCLGNF----SGGLSVLSLQGKNFFG 191 (486)
Q Consensus 127 -~-----~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~N~i~~~~~~~l~~~----~~~L~~L~L~~n~i~~ 191 (486)
+ ++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+... +.+|++|++++|.+.+
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 2 78888888888888655553 3344 788888888888886655555442 3248888888888875
Q ss_pred cCC----ccccCCC-CccEEECcCCccccccCcc----CcCC-CCCCEEEccCCccccC----CCccccC-CCCCCEEEc
Q 048443 192 TTP----DTFMNGS-DLRMVDLSHNLLQGKIPKS----LANC-AVLEISDLRNNQINDT----FPIWLGS-LLELNILVL 256 (486)
Q Consensus 192 ~~~----~~~~~l~-~L~~L~L~~N~l~~~~p~~----~~~l-~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l 256 (486)
... ..+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+. ++..+.. .++|+.|++
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 433 3334444 7888888888887655443 3344 4888888888887653 2223333 235666665
Q ss_pred Ccc
Q 048443 257 IQQ 259 (486)
Q Consensus 257 ~~n 259 (486)
++|
T Consensus 233 s~N 235 (362)
T 3goz_A 233 CLN 235 (362)
T ss_dssp CSS
T ss_pred cCC
Confidence 555
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.8e-22 Score=185.02 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=96.6
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+|..+. ++++.|+|++|++.+..+..|.++++|++|+++ +|.+++..+..+.. +++|++|++++|.++.+
T Consensus 29 ~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~----- 98 (251)
T 3m19_A 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD-YNQLQTLSAGVFDD--LTELGTLGLANNQLASL----- 98 (251)
T ss_dssp CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTT--CTTCCEEECTTSCCCCC-----
T ss_pred cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECC-CCcCCccCHhHhcc--CCcCCEEECCCCccccc-----
Confidence 444444 467777777777776666667777777777777 67777666666666 66666666666666554
Q ss_pred CCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccC
Q 048443 120 VLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMN 199 (486)
Q Consensus 120 l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~ 199 (486)
.+..|..+++|++|++++|++++..+..+..++. |++|++++|++++..+..|..
T Consensus 99 ------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 99 ------------------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-LKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp ------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTT
T ss_pred ------------------------ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc-ccEEECcCCcCCccCHHHcCc
Confidence 2333444444444444444444333333444443 555555555555444445555
Q ss_pred CCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 200 GSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 200 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666666666666665555556666666666666666654
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=4.1e-25 Score=230.03 Aligned_cols=347 Identities=9% Similarity=-0.025 Sum_probs=170.2
Q ss_pred cCCcccccCCcCCCC-CC-CCCEeeCcCCCC-CC-CCcccccCCCCCCeeccCCCCccccc----CCchhccccCCCCcE
Q 048443 32 RLSDFSGQIPPSLGN-LN-QLQWLDLAFNNF-LR-ELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSY 103 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~-l~-~L~~L~Ls~n~~-~~-~~~~~~~~l~~L~~L~L~~~n~i~~~----~p~~~~~~~l~~L~~ 103 (486)
+++.+++..+..+.. ++ +|++|+|++|.. .. .++.....+++|++|+++ +|.+++. ++..... +++|++
T Consensus 120 ~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~~~~~~~~~l~~~~~~--~~~L~~ 196 (592)
T 3ogk_B 120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME-ESSFSEKDGKWLHELAQH--NTSLEV 196 (592)
T ss_dssp ESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECT-TCEEECCCSHHHHHHHHH--CCCCCE
T ss_pred eccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECc-cccccCcchhHHHHHHhc--CCCccE
Confidence 444444444433333 22 366666655541 10 011122345566666665 5555443 2222333 555666
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECc----------------------
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLS---------------------- 160 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls---------------------- 160 (486)
|++++|.++.+..- -++..+. +++|++|++++|.+.+ ++..+..+++|+.|+++
T Consensus 197 L~L~~n~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 197 LNFYMTEFAKISPK--DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp EECTTCCCSSCCHH--HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred EEeeccCCCccCHH--HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 66665555422100 0111111 4555555555555542 33444444444444443
Q ss_pred -----CCcCcccccchhhhcCCCCcEEEccCccccccCC-ccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccC
Q 048443 161 -----DNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234 (486)
Q Consensus 161 -----~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 234 (486)
++.. ..+|..+..+++ |++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++
T Consensus 274 ~L~l~~~~~-~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EEEETTCCT-TTGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCccccch-hHHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 3221 133444444554 6666666666543322 2234556666666662222222222334456666666662
Q ss_pred -----------CccccCCC-ccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch---hccccccccccc
Q 048443 235 -----------NQINDTFP-IWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR---YMENFLSSYFSF 299 (486)
Q Consensus 235 -----------N~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~---~~~~~~~~~~~~ 299 (486)
|.+++... .....+++|+.|+++.+. +.+..+..+...+++|+.++++.+. .+...... .+.
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~ 428 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD--ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGV 428 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC--CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCC--ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHH
Confidence 34432211 122345666666664432 2222233323335566666664221 11100000 000
Q ss_pred cccccCCCCcceEEeecCC--Cccc----cCcccCcccEEEcccccccc-cCccchhccCCCCeeeCCCcccCcc-Cchh
Q 048443 300 DFYRYFPQNDYSITMSNEG--QMMT----HDKIPDILKGIILSSNRFDG-EMPTSIANLKGLQVLGLASNNLQGH-IPSC 371 (486)
Q Consensus 300 ~~~~~~~~~~~~l~~~~~~--~~~~----~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 371 (486)
.....--+.++.++++.+. +... ....+++|+.|++++|++++ .++..+..+++|++|++++|.+++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 0000002345667765322 2211 12236789999999999986 3455668899999999999998754 3444
Q ss_pred ccCCCCCCEEeCCCCCCC
Q 048443 372 LGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 372 ~~~l~~L~~L~Ls~N~l~ 389 (486)
+..+++|++|++++|+++
T Consensus 509 ~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHCSSCCEEEEESCBCC
T ss_pred HHhcCccCeeECcCCcCC
Confidence 567999999999999954
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.3e-24 Score=212.17 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=32.8
Q ss_pred CcccEEEcccccccc----cCccch-hccCCCCeeeCCCcccCccCc
Q 048443 328 DILKGIILSSNRFDG----EMPTSI-ANLKGLQVLGLASNNLQGHIP 369 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~~ 369 (486)
++|+.|+|++|.+++ .+|..+ .++++|++|++++|.+++..+
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 558888888888886 367666 567889999999999886664
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.9e-22 Score=182.84 Aligned_cols=175 Identities=19% Similarity=0.186 Sum_probs=141.6
Q ss_pred CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCC
Q 048443 73 SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNL 151 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l 151 (486)
..++++++ ++.++ .+|..+ .++++.|++++|.++.+ .+..+. +++|++|++++|.+++..+..|..+
T Consensus 15 ~~~~l~~~-~~~l~-~~p~~~----~~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 15 GKKEVDCQ-GKSLD-SVPSGI----PADTEKLDLQSTGLATL------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp GGTEEECT-TCCCS-SCCSCC----CTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCeEEecC-CCCcc-ccCCCC----CCCCCEEEccCCCcCcc------CHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 34555555 55555 334433 34566666666666654 223334 6777777777777776777788999
Q ss_pred CCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEE
Q 048443 152 SSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISD 231 (486)
Q Consensus 152 ~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 231 (486)
++|++|++++|++++..+..|..++. |++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcccccChhHhcccCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 99999999999999777777888887 99999999999988888899999999999999999977777899999999999
Q ss_pred ccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 232 LRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 232 L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+++|++.+..+..+..+++|+.|++++|.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 99999998888899999999999999984
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.7e-23 Score=186.69 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=180.7
Q ss_pred CCcccccCccccee-eee--hhccCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCC-CCCCCcccccCCCCCC
Q 048443 1 EKRCLCSELTRLTI-LLF--YLMTSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNN-FLRELPASIGSLSSLE 75 (486)
Q Consensus 1 ~~~c~c~~l~~l~~-~~~--~~~~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~ 75 (486)
|..|.|...+..++ |.. .... .++.++.|+ ++|++++..+..|+.+++|++|++++|+ +..+.+..|.++++|+
T Consensus 5 p~~C~C~~~~~~~v~c~~l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 5 SPPCECHQEEDFRVTCKDIQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp SSSCSEEECSTTEEEECSCSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred CCCCeeCCCCcceeEccCccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence 67899987344433 322 1222 445677777 8899998888899999999999999997 8877778999999999
Q ss_pred eeccCCC-CcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccC---eeecccC-cccccCCcccc
Q 048443 76 RLDTFPP-MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIR---HYLISKN-NLTGEIPSWIC 149 (486)
Q Consensus 76 ~L~L~~~-n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~---~L~Ls~n-~l~~~~~~~~~ 149 (486)
+|+++ + |.++...+..|.. +++|++|++++|.++.+|. +. +++|+ +|++++| ++++..+..|.
T Consensus 84 ~L~l~-~~n~l~~i~~~~f~~--l~~L~~L~l~~n~l~~lp~--------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 84 HIEIR-NTRNLTYIDPDALKE--LPLLKFLGIFNTGLKMFPD--------LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp EEEEE-EETTCCEECTTSEEC--CTTCCEEEEEEECCCSCCC--------CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred EEECC-CCCCeeEcCHHHhCC--CCCCCEEeCCCCCCccccc--------cccccccccccEEECCCCcchhhcCccccc
Confidence 99999 8 9999888888988 9999999999999998653 23 56776 9999999 99977777899
Q ss_pred CCCCCC-EEECcCCcCcccccchhhhcCCCCcEEEccCcc-ccccCCccccCC-CCccEEECcCCccccccCccCcCCCC
Q 048443 150 NLSSLY-VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN-FFGTTPDTFMNG-SDLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 150 ~l~~L~-~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~-i~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
++++|+ +|++++|+++ .+|........ |+.|++++|+ +++..+..|..+ ++|++|++++|.+++ +|.. .+++
T Consensus 153 ~l~~L~~~L~l~~n~l~-~i~~~~~~~~~-L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~ 227 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEH 227 (239)
T ss_dssp TTBSSEEEEECCSCCCC-EECTTTTTTCE-EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTT
T ss_pred chhcceeEEEcCCCCCc-ccCHhhcCCCC-CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--Hhcc
Confidence 999999 9999999999 55555444455 9999999995 998888889999 999999999999984 5543 6789
Q ss_pred CCEEEccCCc
Q 048443 227 LEISDLRNNQ 236 (486)
Q Consensus 227 L~~L~L~~N~ 236 (486)
|+.|+++++.
T Consensus 228 L~~L~l~~~~ 237 (239)
T 2xwt_C 228 LKELIARNTW 237 (239)
T ss_dssp CSEEECTTC-
T ss_pred CceeeccCcc
Confidence 9999998763
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.3e-23 Score=202.72 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=47.9
Q ss_pred CcccEEEccccc-ccccCccchhccCCCCeeeCCCcc-cCccCchhccCCCCCCEEeCCCCCCC---------CCCEEec
Q 048443 328 DILKGIILSSNR-FDGEMPTSIANLKGLQVLGLASNN-LQGHIPSCLGSLTNLESLDLSKNRLT---------FLEFFNA 396 (486)
Q Consensus 328 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~L~~L~l 396 (486)
++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++ .++.|++
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI 300 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEE
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEE
Confidence 345566666665 444555556666666666666663 22121224556666666666666 32 3667778
Q ss_pred cCCccccCCCCC
Q 048443 397 THNNLTGPIPQA 408 (486)
Q Consensus 397 s~N~l~~~~p~~ 408 (486)
++|++++..|..
T Consensus 301 ~~n~l~~~~~~~ 312 (336)
T 2ast_B 301 NCSHFTTIARPT 312 (336)
T ss_dssp SCCCSCCTTCSS
T ss_pred ecccCccccCCc
Confidence 888899888764
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.5e-23 Score=196.60 Aligned_cols=199 Identities=19% Similarity=0.143 Sum_probs=166.1
Q ss_pred CCCCCCEeeCcCCCCCCCCcccc--cCCCCCCeeccCCCCcccccCC----chhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 46 NLNQLQWLDLAFNNFLRELPASI--GSLSSLERLDTFPPMKIHGNIP----KWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~--~~l~~L~~L~L~~~n~i~~~~p----~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
.+++|++|++++|++.+..|..+ ..+++|++|+++ +|.+++..+ ..+.. +++|++|++++|.++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~----- 160 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLR-NVSWATGRSWLAELQQWL--KPGLKVLSIAQAHSPAF----- 160 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE-SCCCSSTTSSHHHHHTTB--CSCCCEEEEECCSSCCC-----
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEee-cccccchhhhhHHHHhhh--ccCCCEEEeeCCCcchh-----
Confidence 35679999999999999999888 899999999999 999997655 44556 99999999999999886
Q ss_pred CCCcccc-cCccCeeecccCccccc--C--CccccCCCCCCEEECcCCcCcccccc----hhhhcCCCCcEEEccCcccc
Q 048443 120 VLPWTTL-STKIRHYLISKNNLTGE--I--PSWICNLSSLYVLDLSDNNLSGELLQ----CLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 120 l~p~~~~-~~~L~~L~Ls~n~l~~~--~--~~~~~~l~~L~~L~Ls~N~i~~~~~~----~l~~~~~~L~~L~L~~n~i~ 190 (486)
.+..+. +++|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+..++. |++|++++|++.
T Consensus 161 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~-L~~L~Ls~N~l~ 237 (310)
T 4glp_A 161 -SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQ-PHSLDLSHNSLR 237 (310)
T ss_dssp -CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCC-CSSEECTTSCCC
T ss_pred -hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCC-CCEEECCCCCCC
Confidence 345555 89999999999998652 2 234578999999999999997 3333 2456676 999999999999
Q ss_pred ccCCccccCC---CCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 191 GTTPDTFMNG---SDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 191 ~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|.
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence 9888777766 69999999999999 6777664 8999999999999865 33 6788999999999973
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.3e-24 Score=211.06 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=49.1
Q ss_pred CcccEEEccccccccc----Cccchhc--cCCCCeeeCCCcccCc----cCchhc-cCCCCCCEEeCCCCCCC
Q 048443 328 DILKGIILSSNRFDGE----MPTSIAN--LKGLQVLGLASNNLQG----HIPSCL-GSLTNLESLDLSKNRLT 389 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~ 389 (486)
++|+.|+|++|.+++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4577888888888754 4566644 8999999999999997 477776 66899999999988854
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=191.46 Aligned_cols=226 Identities=20% Similarity=0.224 Sum_probs=176.4
Q ss_pred CCCCEeeCcCCCCCCCCcc---cccCCCCCCeeccCCCCcccccCCchh--ccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 48 NQLQWLDLAFNNFLRELPA---SIGSLSSLERLDTFPPMKIHGNIPKWL--LNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~---~~~~l~~L~~L~L~~~n~i~~~~p~~~--~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
..++.+.++++.+....-. .+..+++|++|+++ +|.+.+..|..+ .. +++|++|++++|.++..... ++
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~---~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLE-DLKITGTMPPLPLEAT--GLALSSLRLRNVSWATGRSW---LA 137 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEE-SCCCBSCCCCCSSSCC--CBCCSSCEEESCCCSSTTSS---HH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEee-CCEeccchhhhhhhcc--CCCCCEEEeecccccchhhh---hH
Confidence 4578888888876432111 12345779999999 999999999888 67 99999999999999853110 00
Q ss_pred -cccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCccc--c--cchhhhcCCCCcEEEccCccccccCC--
Q 048443 123 -WTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGE--L--LQCLGNFSGGLSVLSLQGKNFFGTTP-- 194 (486)
Q Consensus 123 -~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~--~--~~~l~~~~~~L~~L~L~~n~i~~~~~-- 194 (486)
..+. +++|++|++++|++++..+..|..+++|++|++++|++.+. . +..+..++. |++|++++|+++...+
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMETPTGVC 216 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCCHHHHH
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCchHHHH
Confidence 1122 78999999999999988888999999999999999998642 2 233466776 9999999999964322
Q ss_pred c-cccCCCCccEEECcCCccccccCccCcCC---CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChh
Q 048443 195 D-TFMNGSDLRMVDLSHNLLQGKIPKSLANC---AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSK 270 (486)
Q Consensus 195 ~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~ 270 (486)
. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++| ....+|.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N---~l~~~~~- 289 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN---RLNRAPQ- 289 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC---CCCSCCC-
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC---cCCCCch-
Confidence 1 25678999999999999998778777776 69999999999998 5566654 79999999998 4555554
Q ss_pred hhhccccccccccccchh
Q 048443 271 YFQCWNAMKFANSSQLRY 288 (486)
Q Consensus 271 ~~~~l~~L~~l~~~~~~~ 288 (486)
+..+++|+.+++++|..
T Consensus 290 -~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp -TTSCCCCSCEECSSTTT
T ss_pred -hhhCCCccEEECcCCCC
Confidence 67789999999999854
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=6.3e-22 Score=188.23 Aligned_cols=200 Identities=25% Similarity=0.274 Sum_probs=165.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+++.+.++ +.++++|++|++++|.+... + .+..+++|++|+++ +|.+.+..+ +.. +++|++|++++|.+
T Consensus 27 ~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~-~n~i~~~~~--~~~--l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 27 GKSNVTDTVT--QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELK-DNQITDLAP--LKN--LTKITELELSGNPL 97 (308)
T ss_dssp TCSSTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTT--CCSCCEEECCSCCC
T ss_pred CCCCcCceec--HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEcc-CCcCCCChh--Hcc--CCCCCEEEccCCcC
Confidence 4455555443 55788999999999997654 4 68899999999999 999987555 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.++ .+. +++|++|++++|++++ ++ .+..+++|++|++++|.+++..+ +..++. |+.|++++|.++
T Consensus 98 ~~~~--------~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L~l~~n~l~ 164 (308)
T 1h6u_A 98 KNVS--------AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTN-LQYLSIGNAQVS 164 (308)
T ss_dssp SCCG--------GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCC
T ss_pred CCch--------hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-ccEEEccCCcCC
Confidence 8753 233 7999999999999985 44 38999999999999999985443 778887 999999999998
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence 7544 8889999999999999985433 8889999999999999986653 888999999999987
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.4e-23 Score=200.88 Aligned_cols=255 Identities=18% Similarity=0.137 Sum_probs=181.8
Q ss_pred CCCEeeCcCCCCCCCCcccccCC--CCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 49 QLQWLDLAFNNFLRELPASIGSL--SSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l--~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
.++.+++++|.+. +..+..+ ++++.|+++ +|.+.+..+. +.. +++|++|++++|.++... ++..+.
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~-~n~l~~~~~~-~~~--~~~L~~L~L~~~~l~~~~-----~~~~~~ 115 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCP-RSFMDQPLAE-HFS--PFRVQHMDLSNSVIEVST-----LHGILS 115 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECT-TCEECSCCCS-CCC--CBCCCEEECTTCEECHHH-----HHHHHT
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcC-Cccccccchh-hcc--CCCCCEEEccCCCcCHHH-----HHHHHh
Confidence 4788899888765 5566666 888999998 8888877665 445 888999999988775310 122333
Q ss_pred -cCccCeeecccCcccccCCccccCCCCCCEEECcCC-cCccc-ccchhhhcCCCCcEEEccCc-ccccc-CCccccCCC
Q 048443 127 -STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN-NLSGE-LLQCLGNFSGGLSVLSLQGK-NFFGT-TPDTFMNGS 201 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~i~~~-~~~~l~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~ 201 (486)
+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..++. |++|++++| .+++. ++..+..++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcChHHHHHHHHhcc
Confidence 788999999999888777778888899999999988 67653 5566777776 999999988 88754 456677788
Q ss_pred -CccEEECcCC--ccc-cccCccCcCCCCCCEEEccCCc-cccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccc
Q 048443 202 -DLRMVDLSHN--LLQ-GKIPKSLANCAVLEISDLRNNQ-INDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWN 276 (486)
Q Consensus 202 -~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~ 276 (486)
+|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|+++++. .+....+..
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-----~~~~~~~~~-- 267 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-----DIIPETLLE-- 267 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-----TCCGGGGGG--
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-----CCCHHHHHH--
Confidence 8999999998 444 3456667788899999999988 666677778888888888887762 111110000
Q ss_pred cccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhcc-CCCC
Q 048443 277 AMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANL-KGLQ 355 (486)
Q Consensus 277 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~ 355 (486)
...+++|+.|++++| ++. ..+..+ .+++
T Consensus 268 -----------------------------------------------l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~ 296 (336)
T 2ast_B 268 -----------------------------------------------LGEIPTLKTLQVFGI-VPD---GTLQLLKEALP 296 (336)
T ss_dssp -----------------------------------------------GGGCTTCCEEECTTS-SCT---TCHHHHHHHST
T ss_pred -----------------------------------------------HhcCCCCCEEeccCc-cCH---HHHHHHHhhCc
Confidence 001356888888887 432 233344 3477
Q ss_pred eeeCCCcccCccCchhccC
Q 048443 356 VLGLASNNLQGHIPSCLGS 374 (486)
Q Consensus 356 ~L~Ls~N~l~~~~~~~~~~ 374 (486)
.|++++|++++..|..++.
T Consensus 297 ~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 297 HLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TSEESCCCSCCTTCSSCSS
T ss_pred ceEEecccCccccCCcccc
Confidence 7778888888877776654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.1e-21 Score=190.22 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=86.3
Q ss_pred CcccccCcccceeeeehhccCC----Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCc-ccccCCCCCC
Q 048443 2 KRCLCSELTRLTILLFYLMTSD----SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELP-ASIGSLSSLE 75 (486)
Q Consensus 2 ~~c~c~~l~~l~~~~~~~~~~~----~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~ 75 (486)
.+|.|+. +.+.|.....+.. ++.++.|+ ++|+|+...+.+|+++++|++|+|++|++.+.+| .+|.++++++
T Consensus 5 ~~C~C~~--~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 5 RICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp SSSEEET--TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CccEeeC--CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 3599985 2344543322222 22344444 4444444333445555555555555555433332 3444454444
Q ss_pred e-eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeeccc-CcccccCCccccCCC
Q 048443 76 R-LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISK-NNLTGEIPSWICNLS 152 (486)
Q Consensus 76 ~-L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~~l~ 152 (486)
+ +.+. +|+++...|..|.. +++|++|++++|+++.+|. ..+. ..++..|++.+ ++++...+..|..+.
T Consensus 83 ~~l~~~-~N~l~~l~~~~f~~--l~~L~~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 83 EIRIEK-ANNLLYINPEAFQN--LPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp EEEEEE-ETTCCEECTTSBCC--CTTCCEEEEEEECCSSCCC------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred hhhccc-CCcccccCchhhhh--ccccccccccccccccCCc------hhhcccchhhhhhhccccccccccccchhhcc
Confidence 3 2223 44555444444444 5555555555555544322 1111 33344444433 334433333344332
Q ss_pred -CCCEEECcCCcCcccccchhhhcCCCCcEEEccC-ccccccCCccccCCCCccEEECcCCccc
Q 048443 153 -SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG-KNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 153 -~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
.++.|++++|+|+. ++.......+ |+++++++ |.++.+.++.|..+++|++|++++|+++
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhhhhhccccccccC-CChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 34445555555542 2222222222 44444442 3333333334444455555555555544
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.6e-21 Score=189.09 Aligned_cols=240 Identities=18% Similarity=0.116 Sum_probs=130.2
Q ss_pred CeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCC-ccccCCC
Q 048443 75 ERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIP-SWICNLS 152 (486)
Q Consensus 75 ~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~-~~~~~l~ 152 (486)
++++.+ +++++ .+|..+ .+++++|+|++|+|+.+|. ..|. +++|++|+|++|++.+.+| .+|.+++
T Consensus 12 ~~v~C~-~~~Lt-~iP~~l----~~~l~~L~Ls~N~i~~i~~------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQ-ESKVT-EIPSDL----PRNAIELRFVLTKLRVIQK------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp TEEEEE-STTCC-SCCTTC----CTTCSEEEEESCCCSEECT------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CEEEec-CCCCC-ccCcCc----CCCCCEEEccCCcCCCcCH------HHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 445555 55555 345444 3456666666666665421 2333 5666666666666544333 3556666
Q ss_pred CCCE-EECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcC-CccccccCccCcCCC-CCCE
Q 048443 153 SLYV-LDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH-NLLQGKIPKSLANCA-VLEI 229 (486)
Q Consensus 153 ~L~~-L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~ 229 (486)
++++ +.+++|+++...|..|..+++ |++|++++|++....+..+....++..|++.+ +.+....+.+|..+. .+++
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPN-LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTT-CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhcccCCcccccCchhhhhccc-cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 6553 444556666555555666665 66666666666655555555555566666644 345544444455543 4566
Q ss_pred EEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCc
Q 048443 230 SDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQND 309 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (486)
|++++|.++...+..| ...+|+.++++++. ..+.+|..+|..
T Consensus 159 L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n--~l~~i~~~~f~~----------------------------------- 200 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAF-NGTQLDELNLSDNN--NLEELPNDVFHG----------------------------------- 200 (350)
T ss_dssp EECCSSCCCEECTTSS-TTEEEEEEECTTCT--TCCCCCTTTTTT-----------------------------------
T ss_pred hccccccccCCChhhc-cccchhHHhhccCC--cccCCCHHHhcc-----------------------------------
Confidence 6666666654333333 33455555555321 444444443322
Q ss_pred ceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCc-ccCccCchhccCCCCCCEEeCCCCC
Q 048443 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASN-NLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+++|+.||+++|+|+...+..+ .+|+.|.+.++ .++ .+| .+..+++|+.++++++.
T Consensus 201 -----------------l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 201 -----------------ASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -----------------EECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred -----------------CcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC-cCC-CchhCcChhhCcCCCCc
Confidence 3457777777777773333333 44445444433 333 555 36677777777777554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5e-21 Score=182.05 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=159.6
Q ss_pred hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcE
Q 048443 25 PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSY 103 (486)
Q Consensus 25 ~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~ 103 (486)
+.++.|. +++.+.. +| .+..+++|++|++++|++.+..+ +..+++|++|+++ +|.+++. ..+.. +++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~-~n~l~~~--~~~~~--l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS-GNPLKNV--SAIAG--LQSIKT 111 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC-SCCCSCC--GGGTT--CTTCCE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEcc-CCcCCCc--hhhcC--CCCCCE
Confidence 4455555 5666654 55 68999999999999999877655 9999999999999 9999864 46777 999999
Q ss_pred EEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEE
Q 048443 104 LNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVL 182 (486)
Q Consensus 104 L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L 182 (486)
|++++|.++.++. +. +++|++|++++|++++. +. +..+++|+.|++++|++++..+ +..++. |+.|
T Consensus 112 L~l~~n~l~~~~~--------l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~~L 178 (308)
T 1h6u_A 112 LDLTSTQITDVTP--------LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSK-LTTL 178 (308)
T ss_dssp EECTTSCCCCCGG--------GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CCEE
T ss_pred EECCCCCCCCchh--------hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCC-CCEE
Confidence 9999999988532 33 79999999999999954 33 8899999999999999985433 788887 9999
Q ss_pred EccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 183 SLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 183 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|++|++++|++++
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 999999987654 788999999999999999654 38899999999999999975
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=1.4e-23 Score=218.59 Aligned_cols=343 Identities=14% Similarity=0.067 Sum_probs=178.2
Q ss_pred CCCCCCEeeCcCCCCCCCCccccc-CCCCCCeeccCCCC-ccccc-CCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIG-SLSSLERLDTFPPM-KIHGN-IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~L~~~n-~i~~~-~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
.+++|++|+|++|.+.+..+..+. .+++|++|+++ +| .++.. ++..... +++|++|++++|.++.... ..++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~-~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~i~~~~~--~~l~ 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS-SCEGFSTDGLAAIAAT--CRNLKELDLRESDVDDVSG--HWLS 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE-SCEEEEHHHHHHHHHH--CTTCCEEECTTCEEECCCG--GGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC-CcCCCCHHHHHHHHHh--CCCCCEEeCcCCccCCcch--HHHH
Confidence 455666666666665555444443 46666666666 44 34332 2233334 6666666666665543210 0001
Q ss_pred cccc-cCccCeeecccCc--ccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc----------
Q 048443 123 WTTL-STKIRHYLISKNN--LTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN---------- 188 (486)
Q Consensus 123 ~~~~-~~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~---------- 188 (486)
.... +++|++|++++|. ++. .++..+..+++|++|++++|.-.+.++..+..++. |+.|+++.+.
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ-LEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTT-CSEEECSBCCCCCCHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCc-ceEcccccccCccchhhHHH
Confidence 1111 4566666666664 111 01111233466666666665221124444455554 5555543331
Q ss_pred ----------------cc----ccCCccccCCCCccEEECcCCccccccC-ccCcCCCCCCEEEccCCccccC-CCcccc
Q 048443 189 ----------------FF----GTTPDTFMNGSDLRMVDLSHNLLQGKIP-KSLANCAVLEISDLRNNQINDT-FPIWLG 246 (486)
Q Consensus 189 ----------------i~----~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~ 246 (486)
+. +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. .+....
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 11 1122223356788888888887664322 23457788888888877 3322 222233
Q ss_pred CCCCCCEEEcCccC-------CCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEee--c-
Q 048443 247 SLLELNILVLIQQL-------PCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMS--N- 316 (486)
Q Consensus 247 ~l~~L~~L~l~~n~-------~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~- 316 (486)
.+++|+.|++.... ..............+++|+.+.+..+.......... ....+.+..++++ +
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l------~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI------ARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH------HHHCTTCCEEEEEESST
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH------HhhCCCcceeEeecccC
Confidence 57788888773310 001111111222346677766554432211100000 0011345566666 2
Q ss_pred ---CCCccc--------cCcccCcccEEEcccccccccCccchhc-cCCCCeeeCCCcccCccCchhc-cCCCCCCEEeC
Q 048443 317 ---EGQMMT--------HDKIPDILKGIILSSNRFDGEMPTSIAN-LKGLQVLGLASNNLQGHIPSCL-GSLTNLESLDL 383 (486)
Q Consensus 317 ---~~~~~~--------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L 383 (486)
+.+... ....+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|++
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 222210 012256788888876 666555555554 7788888888888876555444 56788888888
Q ss_pred CCCC------------CCCCCEEeccCCccc
Q 048443 384 SKNR------------LTFLEFFNATHNNLT 402 (486)
Q Consensus 384 s~N~------------l~~L~~L~ls~N~l~ 402 (486)
++|+ +++|++|++++|+++
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8887 457888888888774
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.9e-20 Score=167.47 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=99.7
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
+.++.+++.++++|. .+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++. |++
T Consensus 10 ~~v~c~~~~l~~~p~-------~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 80 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-------GI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTY 80 (208)
T ss_dssp TEEECCSSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CCE
T ss_pred CEEEecCCCccCCCC-------CC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCC-cCE
Confidence 355666666665432 11 356777777777777555555677777777777777777554445566665 777
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 777777777666666677777777777777777655556677777777777777777655555666666666666655
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=6.4e-21 Score=170.61 Aligned_cols=168 Identities=20% Similarity=0.189 Sum_probs=142.0
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+|..+ .++|++|++++|++.+..+..|..+++|++|+++ +|++++..+..+.. +++|++|++++|.++.++
T Consensus 22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~---- 92 (208)
T 2o6s_A 22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNK--LTSLTYLNLSTNQLQSLP---- 92 (208)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCC----
T ss_pred CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCC--CCCcCEEECCCCcCCccC----
Confidence 45444 3589999999999988877788999999999999 99999777777788 999999999999998863
Q ss_pred CCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 120 VLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 120 l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
+..+. +++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++. |+.|++++|.+.+
T Consensus 93 --~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~~------- 162 (208)
T 2o6s_A 93 --NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-LQYIWLHDNPWDC------- 162 (208)
T ss_dssp --TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSCCBCC-------
T ss_pred --HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC-ccEEEecCCCeec-------
Confidence 33444 899999999999999777777899999999999999999766666888887 9999999997753
Q ss_pred CCCCccEEECcCCccccccCccCcCCCC
Q 048443 199 NGSDLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
.+++|+.|+++.|.++|.+|.+++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4568999999999999999998887765
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.9e-20 Score=191.15 Aligned_cols=182 Identities=21% Similarity=0.294 Sum_probs=102.3
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccC
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST 128 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~ 128 (486)
+++.|++++|++.+ +|..+. ++|++|+++ +|.++ .+| .. +++|++|++++|.|+.+|. + ..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls-~N~l~-~ip---~~--l~~L~~L~Ls~N~l~~ip~--------l-~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEIT-QNALI-SLP---EL--PASLEYLDACDNRLSTLPE--------L-PA 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECC-SSCCS-CCC---CC--CTTCCEEECCSSCCSCCCC--------C-CT
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECc-CCCCc-ccc---cc--cCCCCEEEccCCCCCCcch--------h-hc
Confidence 56666666666554 444332 566666666 66666 344 22 5666666666666665432 1 12
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|++++|++++ +|. .+++|+.|++++|.+++ +|. .++. |++|++++|.+++ +|. |. ++|+.|+|
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~-L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTS-LEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTT-CCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCC-cCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 66666666666664 444 45666666666666663 443 2333 6666666666655 343 43 56666666
Q ss_pred cCCccccccCccCcCCCCC-------CEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCCh
Q 048443 209 SHNLLQGKIPKSLANCAVL-------EISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPS 269 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~ 269 (486)
++|.++ .+|. +.. +| ++|++++|.|+ .+|..+..+++|+.|++++|. +.+.+|.
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~--l~~~~p~ 248 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP--LSSRIRE 248 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS--CCHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc--CCCcCHH
Confidence 666666 4444 433 45 66666666665 345555556666666666653 3444443
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.2e-22 Score=211.53 Aligned_cols=369 Identities=13% Similarity=0.078 Sum_probs=220.8
Q ss_pred CCCCCCCCCEeeCcCCCCCCC---Cc------------ccccCCCCCCeeccCCCCcccccCCchhc-cccCCCCcEEEc
Q 048443 43 SLGNLNQLQWLDLAFNNFLRE---LP------------ASIGSLSSLERLDTFPPMKIHGNIPKWLL-NPSMKNFSYLNL 106 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~---~~------------~~~~~l~~L~~L~L~~~n~i~~~~p~~~~-~~~l~~L~~L~L 106 (486)
.+..+++|+.|+++++..... .| ..+..+++|++|+++ ++.+++..+..+. . +++|++|++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~-~~~~~~~~~~~l~~~--~~~L~~L~L 137 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK-RMVVTDDCLELIAKS--FKNFKVLVL 137 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE-SCBCCHHHHHHHHHH--CTTCCEEEE
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEee-CcEEcHHHHHHHHHh--CCCCcEEeC
Confidence 356678999999999864321 12 223468899999999 8888887777776 5 899999999
Q ss_pred cCC-CCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcccc----CCCCCCEEECcCCc--Ccccc-cchhhhcCC
Q 048443 107 SKN-YFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWIC----NLSSLYVLDLSDNN--LSGEL-LQCLGNFSG 177 (486)
Q Consensus 107 s~N-~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~--i~~~~-~~~l~~~~~ 177 (486)
++| .++... ++.... +++|++|++++|.+++..+..+. .+++|++|++++|. ++... +..+..+++
T Consensus 138 ~~~~~~~~~~-----l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 138 SSCEGFSTDG-----LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp ESCEEEEHHH-----HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred CCcCCCCHHH-----HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 999 443210 112222 79999999999998865444443 67799999999997 33211 112234466
Q ss_pred CCcEEEccCccccccCCccccCCCCccEEECcCCc-------ccc-----------------------ccCccCcCCCCC
Q 048443 178 GLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL-------LQG-----------------------KIPKSLANCAVL 227 (486)
Q Consensus 178 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-------l~~-----------------------~~p~~~~~l~~L 227 (486)
|+.|++++|...+.++..+..+++|++|+++.+. +.+ .++..+..+++|
T Consensus 213 -L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L 291 (594)
T 2p1m_B 213 -LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRL 291 (594)
T ss_dssp -CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTC
T ss_pred -CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCC
Confidence 9999999984333366667778888888865542 111 122222345677
Q ss_pred CEEEccCCccccCCC-ccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccc---cc
Q 048443 228 EISDLRNNQINDTFP-IWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDF---YR 303 (486)
Q Consensus 228 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~---~~ 303 (486)
++|++++|.+++... ..+..+++|+.|+++++ ............+++|+.+++..+..........+.... ..
T Consensus 292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~---~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY---IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG---GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc---cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 777777777553322 22456777777777664 111111222334666776666321000000000000000 00
Q ss_pred cCCCCcceEEeecCCCccccC----cccCcccEEEcc--c----ccccc-----cCccchhccCCCCeeeCCCcccCccC
Q 048443 304 YFPQNDYSITMSNEGQMMTHD----KIPDILKGIILS--S----NRFDG-----EMPTSIANLKGLQVLGLASNNLQGHI 368 (486)
Q Consensus 304 ~~~~~~~~l~~~~~~~~~~~~----~~~~~L~~L~Ls--~----N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~ 368 (486)
.--+.++.+.+..+.+..... ..+++|+.|+++ + +.+++ .++..+..+++|++|++++ .+++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 001345666665555543221 125778888888 3 45552 1222356678888888877 666555
Q ss_pred chhccC-CCCCCEEeCCCCC------------CCCCCEEeccCCccccCCCC--CCCCCCCCCccccCCcC
Q 048443 369 PSCLGS-LTNLESLDLSKNR------------LTFLEFFNATHNNLTGPIPQ--ANQFPTFGYSSFNGNSR 424 (486)
Q Consensus 369 ~~~~~~-l~~L~~L~Ls~N~------------l~~L~~L~ls~N~l~~~~p~--~~~~~~~~~~~~~~np~ 424 (486)
+..+.. +++|++|++++|. +++|++|++++|++++..+. ...+..++.+.+.+|+.
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 555554 7888888888887 47888888888887532221 12245566666666543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.1e-20 Score=174.98 Aligned_cols=183 Identities=20% Similarity=0.279 Sum_probs=149.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+.+.+..+ +..+++|+.|++++|.+... +.+..+++|++|+++ +|++++..+ +.. +++|++|++++|.+
T Consensus 32 ~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~-~n~l~~~~~--l~~--l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 32 KKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN-GNKLTDIKP--LAN--LKNLGWLFLDENKV 102 (291)
T ss_dssp TCSCTTSEEC--HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECC-SSCCCCCGG--GTT--CTTCCEEECCSSCC
T ss_pred cCCCcccccc--hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEcc-CCccCCCcc--ccc--CCCCCEEECCCCcC
Confidence 3444444333 56788999999999997655 348889999999999 999987655 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.++. +. +++|++|++++|++++ + ..+..+++|+.|++++|++++. ..+..++. |+.|++++|.+.
T Consensus 103 ~~~~~--------l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~L~~N~l~ 169 (291)
T 1h6t_A 103 KDLSS--------LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQIS 169 (291)
T ss_dssp CCGGG--------GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCC
T ss_pred CCChh--------hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCC-CCEEEccCCccc
Confidence 87532 33 7899999999999985 3 5688899999999999999854 57888887 999999999998
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
+..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++...
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 7655 8889999999999999985 44 488899999999999998753
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=4.5e-20 Score=179.57 Aligned_cols=116 Identities=23% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCccccc-CCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIG-SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
+|..+. +.++.|+|++|++.+..+..|. .+++|++|+|+ +|+|++..+..|.. +++|++|+|++|+++.++
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~--l~~L~~L~Ls~N~l~~~~--- 104 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVP--VPNLRYLDLSSNHLHTLD--- 104 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTT--CTTCCEEECCSSCCCEEC---
T ss_pred cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccC--CCCCCEEECCCCcCCcCC---
Confidence 454444 3577788888777777666676 77777777777 77777766677776 777777777777776542
Q ss_pred CCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSG 166 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 166 (486)
+..+. +++|++|+|++|++++..+..|.++++|+.|+|++|++++
T Consensus 105 ---~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 105 ---EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred ---HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 22333 5666666666666665555666666666666666666653
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.3e-19 Score=183.10 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=40.6
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 377 (486)
+.|+.|+|++|.|+ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 34699999999998 68888888999999999999999888888776543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=4.3e-19 Score=159.96 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=56.6
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..++. |++|++++|++++..|..|..+++|++|
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS-CCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC-CCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 344444444444444333444555555555555555555444444444444 5555555555555555555555555555
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+|++|.+++..|..|..+++|++|++++|++.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555444555555555555555555554
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.6e-19 Score=159.76 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=96.1
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+|..+. ++++.|++++|++.++.+..|..+++|++|+|+ +|.+++..|..|.. +++|++|+|++|.++.+|.
T Consensus 26 iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~l~~--- 97 (220)
T 2v9t_B 26 IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQG--LRSLNSLVLYGNKITELPK--- 97 (220)
T ss_dssp CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTT--CSSCCEEECCSSCCCCCCT---
T ss_pred CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhC--CcCCCEEECCCCcCCccCH---
Confidence 555554 688999999999888877888889999999998 88888888888888 8888888888888877532
Q ss_pred CCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccc
Q 048443 120 VLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNF 189 (486)
Q Consensus 120 l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i 189 (486)
..+. +++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..++. |+.|++++|.+
T Consensus 98 ---~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~~ 164 (220)
T 2v9t_B 98 ---SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA-IQTMHLAQNPF 164 (220)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCE
T ss_pred ---hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC-CCEEEeCCCCc
Confidence 2233 566666666666666555666666666666666666666444444444443 44444444444
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2.2e-19 Score=185.22 Aligned_cols=186 Identities=19% Similarity=0.257 Sum_probs=155.8
Q ss_pred cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 32 RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 32 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
..+.+...++ +..+++|+.|++++|.+... + .+..+++|+.|+|+ +|.+.+..| +.. +++|+.|+|++|.+
T Consensus 29 ~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls-~N~l~~~~~--l~~--l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 29 KKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLN-GNKLTDIKP--LTN--LKNLGWLFLDENKI 99 (605)
T ss_dssp TCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECT-TSCCCCCGG--GGG--CTTCCEEECCSSCC
T ss_pred cCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEee-CCCCCCChh--hcc--CCCCCEEECcCCCC
Confidence 4455555444 56789999999999997654 3 68899999999999 999997665 777 99999999999999
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
+.+|. +. +++|++|+|++|++++ + ..+..+++|+.|+|++|.+++. ..+..++. |+.|+|++|.+.
T Consensus 100 ~~l~~--------l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 100 KDLSS--------LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQIS 166 (605)
T ss_dssp CCCTT--------STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT-CSEEECCSSCCC
T ss_pred CCChh--------hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCC-CCEEECcCCcCC
Confidence 88543 33 7999999999999985 3 4688999999999999999864 67888887 999999999998
Q ss_pred ccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCc
Q 048443 191 GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPI 243 (486)
Q Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 243 (486)
+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+....
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 8766 88999999999999999854 3688999999999999999765433
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.1e-18 Score=157.30 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=97.9
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
+.++++++.++.+|. .+ .+++++|++++|++++..+..|..+++|+.|+|++|++++..|..|..++. |++
T Consensus 14 ~~v~c~~~~l~~iP~-------~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-------NL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNS 84 (220)
T ss_dssp TEEECTTSCCSSCCS-------SC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS-CCE
T ss_pred CEEEcCCCCcCcCCC-------cc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC-CCE
Confidence 455666666665432 11 245666667776666555556666677777777777776655666666665 777
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
|++++|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 777777776655555666777777777777776666666667777777777777776666666666777777777665
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=157.31 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=134.8
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC-ccccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP-SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
+.+++++|.++++|. .+ ...+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..++. |+
T Consensus 14 ~~l~~s~n~l~~iP~-------~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-------HI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VN 84 (220)
T ss_dssp TEEECCSSCCSSCCS-------CC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT-CC
T ss_pred CEeEeCCCCcccCcc-------CC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC-CC
Confidence 578999999888653 22 3567899999999997644 46899999999999999999877778999997 99
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999999988889999999999999999998889999999999999999999999889999999999999999984
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=7.5e-19 Score=181.24 Aligned_cols=167 Identities=18% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S 127 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~ 127 (486)
.+..+.++.+.+.... .+..+++|+.|+++ +|.+... + .+.. +++|+.|+|++|.++.++ . +. +
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~-~n~i~~l-~-~l~~--l~~L~~L~Ls~N~l~~~~-------~-l~~l 86 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIAN-NSDIKSV-Q-GIQY--LPNVTKLFLNGNKLTDIK-------P-LTNL 86 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCT-TCCCCCC-T-TGGG--CTTCCEEECTTSCCCCCG-------G-GGGC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECc-CCCCCCC-h-HHcc--CCCCCEEEeeCCCCCCCh-------h-hccC
Confidence 3444555555544433 24556667777776 6666543 2 3555 666777777666666542 1 22 5
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++|++|+|++|.+++ ++ .+..+++|+.|+|++|++++ + ..+..++. |+.|+|++|.+.+. ..+..+++|+.|+
T Consensus 87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTT-CSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCc-cCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 666666666666653 22 45666666666666666653 2 33555554 66666666655543 3455555555555
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
|++|.+++..| +..+++|+.|+|++|++.+
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 55555554333 5555555555555555543
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.1e-18 Score=166.55 Aligned_cols=172 Identities=23% Similarity=0.200 Sum_probs=102.3
Q ss_pred CeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc--ccCccCeeecccCcccccCCccccCCC
Q 048443 75 ERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT--LSTKIRHYLISKNNLTGEIPSWICNLS 152 (486)
Q Consensus 75 ~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 152 (486)
++++++ +++++. +|..+ .+.++.|+|++|.|+.++. ..+ .+++|++|+|++|++++..+..|.+++
T Consensus 21 ~~l~c~-~~~l~~-iP~~~----~~~l~~L~Ls~N~l~~l~~------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCS-KQQLPN-VPQSL----PSYTALLDLSHNNLSRLRA------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TEEECC-SSCCSS-CCSSC----CTTCSEEECCSSCCCEECT------TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEEEeC-CCCcCc-cCccC----CCCCCEEECCCCCCCccCh------hhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 466666 666653 45444 3456667777776665532 222 256666666666666655555666666
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccC---cCCCCCCE
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSL---ANCAVLEI 229 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~ 229 (486)
+|++|+|++|++++..+..|..++. |++|++++|++.+..+..|..+++|++|+|++|.+++..+..| ..+++|++
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQA-LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcC-CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 6666666666666554555666665 6666666666666666666666666666666666664333333 34666666
Q ss_pred EEccCCccccCCCccccCCCCC--CEEEcCcc
Q 048443 230 SDLRNNQINDTFPIWLGSLLEL--NILVLIQQ 259 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L--~~L~l~~n 259 (486)
|+|++|.+++..+..+..++.+ +.|++++|
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666666665444555555542 55666554
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.4e-18 Score=163.61 Aligned_cols=186 Identities=19% Similarity=0.220 Sum_probs=154.9
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL- 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~- 126 (486)
.++..+.+..+.+.+.. .+..+++|++|+++ +|.+... + .+.. +++|++|++++|.++.++ . +.
T Consensus 24 ~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~-~~~i~~~-~-~~~~--l~~L~~L~L~~n~l~~~~-------~-l~~ 88 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAV--TQNELNSIDQIIAN-NSDIKSV-Q-GIQY--LPNVTKLFLNGNKLTDIK-------P-LAN 88 (291)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHHTCCEEECT-TSCCCCC-T-TGGG--CTTCCEEECCSSCCCCCG-------G-GTT
T ss_pred HHHHHHHhcCCCccccc--chhhcCcccEEEcc-CCCcccC-h-hHhc--CCCCCEEEccCCccCCCc-------c-ccc
Confidence 34445566666655442 35678999999999 9999865 3 4777 999999999999999863 2 44
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|++|++++|.+++ ++ .+..+++|++|++++|++++. ..+..++. |+.|++++|.+++. ..+..+++|++|
T Consensus 89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCC-CCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 8999999999999985 33 489999999999999999853 56888887 99999999999876 578899999999
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEE
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCC
Confidence 999999996544 88999999999999999864 3 4889999999999987
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.6e-18 Score=153.21 Aligned_cols=151 Identities=20% Similarity=0.107 Sum_probs=77.6
Q ss_pred CCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cC
Q 048443 50 LQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-ST 128 (486)
Q Consensus 50 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~ 128 (486)
.+.++.+++++. .+|..+. ++|++|+++ +|.+++..|..+.. +++|++|+|++|.++.+| +..+. ++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls-~n~i~~~~~~~~~~--l~~L~~L~L~~N~l~~i~------~~~~~~l~ 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLH-DNQITKLEPGVFDS--LINLKELYLGSNQLGALP------VGVFDSLT 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECC-SSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCC------TTTTTTCT
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcC-CCccCccCHHHhhC--ccCCcEEECCCCCCCCcC------hhhcccCC
Confidence 345666655533 3333332 556666666 66666655655655 666666666666655542 12222 45
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
+|++|+|++|++++..+..|..+++|++|++++|+++ .+|..+..++. |++|++++|++.+..+..|..+++|+.|++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH-LTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC-CCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 5555555555555444444555555666666555555 44444444443 444544444444443344444444444444
Q ss_pred cCCccc
Q 048443 209 SHNLLQ 214 (486)
Q Consensus 209 ~~N~l~ 214 (486)
++|.+.
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 444443
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=5.4e-21 Score=196.04 Aligned_cols=201 Identities=18% Similarity=0.172 Sum_probs=141.3
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCc-------------ccccCCchhccccCCCCcEEE-ccCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMK-------------IHGNIPKWLLNPSMKNFSYLN-LSKN 109 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~-------------i~~~~p~~~~~~~l~~L~~L~-Ls~N 109 (486)
+..+++|+.|+|++|++. .+|..++.+++|+.|+++ +|. ..+..|..+.. +++|+.|+ ++.|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~-~n~~l~~l~~ll~~~~~~~~~~~~l~~--l~~L~~L~~l~~n 420 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQY--FSTLKAVDPMRAA 420 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGGGHHHHHHH--HHHHHHHCGGGHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccc-cchhhhhHHHHHHhcccccCCHHHHHH--HHhcccCcchhhc
Confidence 367889999999999964 679999999999999997 665 45667778888 88888888 6666
Q ss_pred CCCCCCCC--C-CCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccC
Q 048443 110 YFPRFDQH--P-TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQG 186 (486)
Q Consensus 110 ~l~~~~~l--~-~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~ 186 (486)
.+..++.+ . +-+ ..+....|++|++++|.+++ +|. |..+++|+.|+|++|.++ .+|..++.++. |+.|++++
T Consensus 421 ~~~~L~~l~l~~n~i-~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~Ls~ 495 (567)
T 1dce_A 421 YLDDLRSKFLLENSV-LKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC-LEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT-CCEEECCS
T ss_pred ccchhhhhhhhcccc-cccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC-CCEEECCC
Confidence 44322100 0 000 00002357778888887774 555 777778888888888777 66777777776 88888888
Q ss_pred ccccccCCccccCCCCccEEECcCCcccccc-CccCcCCCCCCEEEccCCccccCCCcc---ccCCCCCCEEE
Q 048443 187 KNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI-PKSLANCAVLEISDLRNNQINDTFPIW---LGSLLELNILV 255 (486)
Q Consensus 187 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~ 255 (486)
|.+++ +| .+..+++|++|+|++|.+++.. |..++.+++|++|++++|++++.+|.. +..+++|+.|+
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 87776 45 6777777888888888777655 777777788888888888777654432 23366666665
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.5e-18 Score=152.83 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=110.3
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 100 NFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 100 ~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
+-+.++.+++.++.+|. .+ .++|++|++++|++++..|..|..+++|++|+|++|+++...+..|..++. |
T Consensus 20 s~~~v~c~~~~l~~ip~-------~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-L 90 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-------GI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-L 90 (229)
T ss_dssp ETTEEECTTSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-C
T ss_pred eCCEeEccCCCcCccCC-------CC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-c
Confidence 34567777777776543 11 367777788888777766777777788888888888877554455666776 8
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCcc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n 259 (486)
++|++++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 88888888887776667777788888888888877 66777777888888888888887666667777788888887776
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1e-18 Score=161.97 Aligned_cols=166 Identities=18% Similarity=0.272 Sum_probs=124.2
Q ss_pred hhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEE
Q 048443 27 LDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLN 105 (486)
Q Consensus 27 l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~ 105 (486)
+..+. +.+.+.+.. .+..+++|++|++++|++... + .+..+++|++|+++ +|++++..+ +.. +++|++|+
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~-~N~i~~~~~--l~~--l~~L~~L~ 91 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLS-HNQISDLSP--LKD--LTKLEELS 91 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTT--CSSCCEEE
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECC-CCccCCChh--hcc--CCCCCEEE
Confidence 34443 556665433 577888899999998887653 3 67888889999998 888886555 767 88899999
Q ss_pred ccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEcc
Q 048443 106 LSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 106 Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~ 185 (486)
+++|+++.+|. ++ . ++|++|++++|++++ + +.+..+++|+.|++++|++++. + .+..++. |+.|+++
T Consensus 92 L~~N~l~~l~~----~~---~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~-L~~L~L~ 158 (263)
T 1xeu_A 92 VNRNRLKNLNG----IP---S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSK-LEVLDLH 158 (263)
T ss_dssp CCSSCCSCCTT----CC---C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTT-CCEEECT
T ss_pred CCCCccCCcCc----cc---c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCC-CCEEECC
Confidence 99888887654 11 1 788888888888884 3 3578888888888888888753 3 5777776 8888888
Q ss_pred CccccccCCccccCCCCccEEECcCCccccc
Q 048443 186 GKNFFGTTPDTFMNGSDLRMVDLSHNLLQGK 216 (486)
Q Consensus 186 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 216 (486)
+|++++. ..+..+++|+.|++++|.++..
T Consensus 159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888766 5677788888888888887743
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.9e-18 Score=152.97 Aligned_cols=151 Identities=11% Similarity=0.181 Sum_probs=87.0
Q ss_pred CCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccc
Q 048443 70 SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWI 148 (486)
Q Consensus 70 ~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~ 148 (486)
.+++|++|+++ +|.++ .+| .+.. +++|++|++++|.++.++ .+. +++|++|++++|++++..+..+
T Consensus 42 ~l~~L~~L~l~-~n~i~-~l~-~l~~--l~~L~~L~l~~n~~~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 42 QMNSLTYITLA-NINVT-DLT-GIEY--AHNIKDLTINNIHATNYN--------PISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHTCCEEEEE-SSCCS-CCT-TGGG--CTTCSEEEEESCCCSCCG--------GGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred hcCCccEEecc-CCCcc-ChH-HHhc--CCCCCEEEccCCCCCcch--------hhhcCCCCCEEEeECCccCcccChhh
Confidence 33444444444 44444 222 3444 555555555555444321 122 5566666666666665556666
Q ss_pred cCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc-ccccCCccccCCCCccEEECcCCccccccCccCcCCCCC
Q 048443 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN-FFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVL 227 (486)
Q Consensus 149 ~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 227 (486)
..+++|++|++++|++++..+..+..++. |++|++++|. +.. ++ .+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~-L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L 183 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL 183 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSS-CCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCC-CCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence 66777777777777776556666666665 7777777776 433 33 46666777777777777764 33 56667777
Q ss_pred CEEEccCCccc
Q 048443 228 EISDLRNNQIN 238 (486)
Q Consensus 228 ~~L~L~~N~l~ 238 (486)
++|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 77777777664
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.3e-18 Score=159.61 Aligned_cols=170 Identities=19% Similarity=0.199 Sum_probs=127.9
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+.+++.+++++|.+.+.. .+..+++|++|+++ +|.++. ++ .+.. +++|++|++++|+++.++ . +
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~-~n~i~~-l~-~l~~--l~~L~~L~L~~N~i~~~~-------~-l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGD-NSNIQS-LA-GMQF--FTNLKELHLSHNQISDLS-------P-L 81 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECT-TSCCCC-CT-TGGG--CTTCCEEECCSSCCCCCG-------G-G
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECc-CCCccc-ch-HHhh--CCCCCEEECCCCccCCCh-------h-h
Confidence 4566777888888876543 57788888888888 888875 34 5667 888888888888888753 2 3
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCcc
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLR 204 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 204 (486)
. +++|++|++++|++++ +|.. .. ++|++|++++|++++. ..+..++. |+.|++++|++++. + .+..+++|+
T Consensus 82 ~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~-L~~L~Ls~N~i~~~-~-~l~~l~~L~ 153 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKN-LEILSIRNNKLKSI-V-MLGFLSKLE 153 (263)
T ss_dssp TTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTT-CCEEECTTSCCCBC-G-GGGGCTTCC
T ss_pred ccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCccc-ccEEECCCCcCCCC-h-HHccCCCCC
Confidence 3 7888888888888884 4432 22 7888888888888753 35777776 88888888888765 2 577788888
Q ss_pred EEECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 205 MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 205 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
+|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888888888755 5677888888888888887654
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.4e-18 Score=183.56 Aligned_cols=181 Identities=21% Similarity=0.198 Sum_probs=95.6
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
..|..|..++.|+.|+|++|.+. .+|..+..+++|++|+|+ +|.++ .+|..+.. +++|++|+|++|.|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls-~N~l~-~lp~~~~~--l~~L~~L~Ls~N~l~~----- 284 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLN-GNSLT-ELPAEIKN--LSNLRVLDLSHNRLTS----- 284 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCT-TSCCS-CCCGGGGG--GTTCCEEECTTSCCSS-----
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEee-CCcCc-ccChhhhC--CCCCCEEeCcCCcCCc-----
Confidence 34566777777777777777765 455555577777777777 77777 66777776 7777777777777775
Q ss_pred CCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccc
Q 048443 119 TVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTF 197 (486)
Q Consensus 119 ~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~ 197 (486)
+|..+. +++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+......+..+++++|.+++.+|..
T Consensus 285 --lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 285 --LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp --CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred --cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 344555 677777777777776 566667777777777777777777666666554321234667777776665543
Q ss_pred cCCCCccEEECcCC--------ccccccCccCcCCCCCCEEEccCCccc
Q 048443 198 MNGSDLRMVDLSHN--------LLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 198 ~~l~~L~~L~L~~N--------~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|+.|++++| .+.+..+..+..+..+....+++|.+.
T Consensus 361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------------------------------CCC
T ss_pred -----cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 444555555 222222333344444555555555543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=147.56 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=126.0
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
+++|++|++++|.++.+| .+. +++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..++
T Consensus 43 l~~L~~L~l~~n~i~~l~--------~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--------GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--------TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred cCCccEEeccCCCccChH--------HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 889999999999998753 233 789999999999776 335788899999999999999977888888888
Q ss_pred CCCcEEEccCccccccCCccccCCCCccEEECcCCc-cccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEE
Q 048443 177 GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNL-LQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILV 255 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 255 (486)
. |++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+.+.. .+..+++|+.|+
T Consensus 113 ~-L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 S-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp T-CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred C-CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 7 9999999999988788889999999999999998 66 455 6888999999999999998633 678889999999
Q ss_pred cCcc
Q 048443 256 LIQQ 259 (486)
Q Consensus 256 l~~n 259 (486)
+++|
T Consensus 188 l~~N 191 (197)
T 4ezg_A 188 AFSQ 191 (197)
T ss_dssp ECBC
T ss_pred eeCc
Confidence 9887
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.6e-17 Score=146.28 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=111.1
Q ss_pred CCcccccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcc-cccCCCCCCeecc
Q 048443 1 EKRCLCSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPA-SIGSLSSLERLDT 79 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L 79 (486)
|..|.|.. +.+++ ++|.+ +.+|..+.. ++++|++++|++.+..+. .|..+++|++|++
T Consensus 3 P~~C~C~~-~~l~~-----------------s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L 61 (192)
T 1w8a_A 3 PAMCHCEG-TTVDC-----------------TGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61 (192)
T ss_dssp CTTSEEET-TEEEC-----------------TTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEEC
T ss_pred CCCCEECC-CEEEc-----------------CCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEEC
Confidence 67888875 44554 34444 456665553 899999999998877765 4889999999999
Q ss_pred CCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEE
Q 048443 80 FPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLD 158 (486)
Q Consensus 80 ~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 158 (486)
+ +|.+++..|..|.. +++|++|+|++|+++.+ .+..+. +++|++|++++|++++..|..|..+++|++|+
T Consensus 62 s-~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 62 K-RNQLTGIEPNAFEG--ASHIQELQLGENKIKEI------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp C-SSCCCCBCTTTTTT--CTTCCEEECCSCCCCEE------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred C-CCCCCCcCHhHcCC--cccCCEEECCCCcCCcc------CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 9 99999888999988 99999999999999876 334454 78899999999999888888888889999999
Q ss_pred CcCCcCccccc
Q 048443 159 LSDNNLSGELL 169 (486)
Q Consensus 159 Ls~N~i~~~~~ 169 (486)
+++|.+.+..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 99998876543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2.8e-18 Score=181.39 Aligned_cols=181 Identities=24% Similarity=0.190 Sum_probs=103.3
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCe-----eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLER-----LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~-----L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
+.++.|+|++|.+... +..+.....|+. +++. .|.+. ..++.+.. +++|+.|+|++|.+..+ |
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~-~n~~~-~~~~~~~~--l~~L~~L~Ls~n~l~~l-------~ 240 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDI-ENRMV-MPKDSKYD--DQLWHALDLSNLQIFNI-------S 240 (727)
T ss_dssp ----------------------------------------------------C--CCCCCEEECTTSCCSCC-------C
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccc-cccee-cChhhhcc--CCCCcEEECCCCCCCCC-------C
Confidence 5678888888876543 333322222222 2233 33333 44666777 88888888888888764 3
Q ss_pred cccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC
Q 048443 123 WTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS 201 (486)
Q Consensus 123 ~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 201 (486)
..+. +++|++|+|++|.++ .+|..|..+++|++|+|++|.|+ .+|..++.+.. |++|+|++|.+. .+|..|..++
T Consensus 241 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~-~lp~~~~~l~ 316 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ-LKYFYFFDNMVT-TLPWEFGNLC 316 (727)
T ss_dssp GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT-CSEEECCSSCCC-CCCSSTTSCT
T ss_pred hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC-CCEEECCCCCCC-ccChhhhcCC
Confidence 3333 788888888888888 77888888888888888888888 67888888876 888888888886 5566688888
Q ss_pred CccEEECcCCccccccCccCcCCCC-CCEEEccCCccccCCCcc
Q 048443 202 DLRMVDLSHNLLQGKIPKSLANCAV-LEISDLRNNQINDTFPIW 244 (486)
Q Consensus 202 ~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~ 244 (486)
+|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|..
T Consensus 317 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 8888888888888777766654322 223677788877766653
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.4e-16 Score=140.26 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=100.6
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCc-cccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPS-WICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
+++++++|.++++|. .+ ..++++|++++|++++..+. .|..+++|++|++++|++++..|..|..++. |+
T Consensus 11 ~~l~~s~~~l~~ip~-------~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-------DI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-IQ 81 (192)
T ss_dssp TEEECTTSCCSSCCS-------CC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-CC
T ss_pred CEEEcCCCCcCcCcc-------CC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc-CC
Confidence 577788887777543 11 24778888888888755543 4778888888888888888777777888776 88
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
+|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|++.+.
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888888888888777788888888888888888877788888888888888888887654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3.4e-19 Score=182.70 Aligned_cols=195 Identities=18% Similarity=0.137 Sum_probs=155.8
Q ss_pred Chhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCC-------------CCCCCcccccCCCCCCeec-cCCCCccccc
Q 048443 24 SPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNN-------------FLRELPASIGSLSSLERLD-TFPPMKIHGN 88 (486)
Q Consensus 24 ~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-------------~~~~~~~~~~~l~~L~~L~-L~~~n~i~~~ 88 (486)
.+.+++|+ +.|.+. .+|+.++++++|+.|++++|. ..+..|..++.+++|+.|+ ++ .|.+...
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~-~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-hcccchh
Confidence 45566776 556664 789999999999999997774 5677788899999999998 55 5544321
Q ss_pred CCc-----hhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCC
Q 048443 89 IPK-----WLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN 162 (486)
Q Consensus 89 ~p~-----~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 162 (486)
... .+.......|+.|++++|.++++ |. +. +++|++|+|++|+++ .+|..|+.+++|+.|+|++|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-------p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVL-------CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-------CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCC-------cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 110 11110034699999999999985 44 44 899999999999999 88999999999999999999
Q ss_pred cCcccccchhhhcCCCCcEEEccCccccccC-CccccCCCCccEEECcCCccccccCcc---CcCCCCCCEEEc
Q 048443 163 NLSGELLQCLGNFSGGLSVLSLQGKNFFGTT-PDTFMNGSDLRMVDLSHNLLQGKIPKS---LANCAVLEISDL 232 (486)
Q Consensus 163 ~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L 232 (486)
++++ +| .++.++. |+.|++++|++++.. |..|..+++|+.|++++|.+++..|.. +..+++|++|++
T Consensus 497 ~l~~-lp-~l~~l~~-L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALEN-VD-GVANLPR-LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-CG-GGTTCSS-CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-Cc-ccCCCCC-CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9996 66 8899997 999999999999887 999999999999999999999654432 234889999874
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=9.3e-16 Score=134.95 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=93.8
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcE
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSV 181 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~ 181 (486)
+++++++|.++.+|. .+ .++|++|++++|+++ .+|..|.++++|++|++++|.+++..+..|..++. |++
T Consensus 13 ~~l~~~~~~l~~ip~-------~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~-L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-------GI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ-LLT 82 (193)
T ss_dssp TEEECTTSCCSSCCS-------CC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT-CCE
T ss_pred CEEEcCCCCCCcCCC-------CC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC-CCE
Confidence 567777777776543 11 356777888888877 66677777888888888888887666666777776 888
Q ss_pred EEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 182 LSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888888877777777777788888888888877555556777778888888877765
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=9.7e-17 Score=138.10 Aligned_cols=132 Identities=17% Similarity=0.063 Sum_probs=89.5
Q ss_pred CCCCEeeCcCCCCC-CCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFL-RELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
++|++|++++|++. +.+|..+..+++|++|+++ +|.+++. ..+.. +++|++|++++|.++.. +|..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~--l~~L~~L~Ls~N~l~~~------~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISV--SNLPK--LPKLKKLELSENRIFGG------LDMLAE 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCC--SSCCC--CSSCCEEEEESCCCCSC------CCHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCCh--hhhcc--CCCCCEEECcCCcCchH------HHHHHh
Confidence 66777777777765 4666666777777777777 7777655 55666 77777777777777663 344444
Q ss_pred -cCccCeeecccCcccccC-CccccCCCCCCEEECcCCcCccccc---chhhhcCCCCcEEEccCccccc
Q 048443 127 -STKIRHYLISKNNLTGEI-PSWICNLSSLYVLDLSDNNLSGELL---QCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~---~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..++. |++|++++|.+..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~ 161 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ-LTYLDGYDREDQE 161 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS-CCEETTEETTSCB
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc-CcEecCCCCChhh
Confidence 677777777777777432 2567777777777777777774433 35666665 7777777777654
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=4.9e-16 Score=149.04 Aligned_cols=219 Identities=14% Similarity=0.073 Sum_probs=146.8
Q ss_pred CCCCCEeeCcCCCCC--------------------CCCcccccC--------CCCCCeeccCCCCcccccCCchhccccC
Q 048443 47 LNQLQWLDLAFNNFL--------------------RELPASIGS--------LSSLERLDTFPPMKIHGNIPKWLLNPSM 98 (486)
Q Consensus 47 l~~L~~L~Ls~n~~~--------------------~~~~~~~~~--------l~~L~~L~L~~~n~i~~~~p~~~~~~~l 98 (486)
+++|+.|||++|++. .+.+.+|.+ +++|+.|++. + .++.+.+.+|.+ +
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~-~-~i~~I~~~aF~~--~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS-E-KIKNIEDAAFKG--C 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBC-T-TCCEECTTTTTT--C
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECC-c-cccchhHHHhhc--C
Confidence 677888888888876 233456777 8888888887 6 777777777888 8
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcc----cccCCccccCCCCCC------------------
Q 048443 99 KNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNL----TGEIPSWICNLSSLY------------------ 155 (486)
Q Consensus 99 ~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~------------------ 155 (486)
++|+.|++++|.+..++. ..|. +.++.++.+..+.. ......+|.++..|+
T Consensus 124 ~~L~~l~l~~n~i~~i~~------~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLP------EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTCCEEEBCCSSCCEECT------TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred cccceEEcCCCCccccch------hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 888888888888876632 3333 45555555544221 112233344444444
Q ss_pred --------EEECcCCcCcccccchhhh-cCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCC
Q 048443 156 --------VLDLSDNNLSGELLQCLGN-FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAV 226 (486)
Q Consensus 156 --------~L~Ls~N~i~~~~~~~l~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 226 (486)
.+.+.++- .......+.. +++ |+.+++++|+++.+.+.+|.++++|+.+++++| ++...+.+|.++++
T Consensus 198 ~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~-L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKL-DNADFKLIRDYMPN-LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp TCCGGGCSEEEEEECC-CHHHHHHHHHHCTT-CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccCccccceEEEeeee-cHHHHHHHHHhcCC-CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence 22222221 1111112222 344 888888888888877788888888888888887 66666778888888
Q ss_pred CC-EEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccc
Q 048443 227 LE-ISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFAN 282 (486)
Q Consensus 227 L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~ 282 (486)
|+ .+++.+ .++.+.+.+|.++++|+.++++.+ ....++...|.++++|+.+.
T Consensus 275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n---~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD---KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS---CCCEECTTTTCTTCCCCEEE
T ss_pred ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC---ccCccchhhhcCCcchhhhc
Confidence 88 888887 676677778888888888888666 66777777888888887664
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.3e-16 Score=134.06 Aligned_cols=131 Identities=17% Similarity=0.106 Sum_probs=81.9
Q ss_pred CCCCcEEEccCCCCC--CCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhh
Q 048443 98 MKNFSYLNLSKNYFP--RFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGN 174 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~--~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 174 (486)
.++|++|++++|.++ . +|..+. +++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~-------i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK-------IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTB-------CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhh-------HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 455666666666655 3 233333 56666666666666643 55666667777777777766555555555
Q ss_pred cCCCCcEEEccCccccccC-CccccCCCCccEEECcCCccccccC---ccCcCCCCCCEEEccCCccc
Q 048443 175 FSGGLSVLSLQGKNFFGTT-PDTFMNGSDLRMVDLSHNLLQGKIP---KSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 175 ~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 238 (486)
++. |++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 94 l~~-L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 94 LPN-LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CTT-CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCC-CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 665 777777777665542 2556667777777777777774433 35667777777777777765
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=6.1e-15 Score=144.64 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=100.6
Q ss_pred CcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCC
Q 048443 34 SDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPR 113 (486)
Q Consensus 34 n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~ 113 (486)
++++..-+.+|.+. +|+.+.+..+ +..+...+|.+. +|+.+++. . .+..+.+.+|.+ +++|+.+++++|.++.
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp-~-~l~~I~~~aF~~--c~~L~~l~l~~n~l~~ 194 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFP-S-TLEQLKEDIFYY--CYNLKKADLSKTKITK 194 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECC-T-TCCEECSSTTTT--CTTCCEEECTTSCCSE
T ss_pred CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeC-C-CccEehHHHhhC--cccCCeeecCCCcceE
Confidence 44444444455553 5666666544 455555555553 46666664 2 455455555555 6666666666666655
Q ss_pred CCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccC
Q 048443 114 FDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTT 193 (486)
Q Consensus 114 ~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~ 193 (486)
++. ..|...+|+++.+..+ ++.....+|.++++|+.+++..+ ++.....+|.. .. |+.+.+ .+.++.+.
T Consensus 195 I~~------~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~-L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 195 LPA------STFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG-ITTVKL-PNGVTNIA 263 (401)
T ss_dssp ECT------TTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC-CSEEEE-ETTCCEEC
T ss_pred ech------hhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC-ccEEEe-CCCccEEC
Confidence 432 2222455666666533 44444555666666666666543 33233333433 32 555555 23344444
Q ss_pred CccccCCCCccEEECcCCccc-----cccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEc
Q 048443 194 PDTFMNGSDLRMVDLSHNLLQ-----GKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256 (486)
Q Consensus 194 ~~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 256 (486)
..+|.++++|+.+++.+|.+. ...+.+|.+|++|+.+++.+ .+......+|.++++|+.+.+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 455555555555555554432 23334455555555555542 233333334444444444443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.2e-16 Score=134.59 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=62.4
Q ss_pred CccCeeecccCccc-ccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 128 TKIRHYLISKNNLT-GEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..++. |++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK-LKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT-CCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC-CCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34455555555544 34444445555555555555555432 33444443 5555555555544444444445555555
Q ss_pred ECcCCccccc-cCccCcCCCCCCEEEccCCccccCCC---ccccCCCCCCEEEc
Q 048443 207 DLSHNLLQGK-IPKSLANCAVLEISDLRNNQINDTFP---IWLGSLLELNILVL 256 (486)
Q Consensus 207 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 256 (486)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555555532 12445555555555555555554433 34455555555544
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.1e-15 Score=131.63 Aligned_cols=126 Identities=21% Similarity=0.197 Sum_probs=114.4
Q ss_pred cCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECc
Q 048443 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209 (486)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 209 (486)
-+++++++|+++ .+|..+. ++|++|++++|.++ .+|..|..+.. |+.|++++|.+++..+..|.++++|++|+|+
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~-L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccC-CCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 368999999999 6776553 68999999999998 77888999997 9999999999999988999999999999999
Q ss_pred CCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 210 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+|.+++..+.+|..+++|++|++++|.++...+..|..+++|+.|++++|.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 999998888899999999999999999998777789999999999999974
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.6e-15 Score=130.28 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=92.2
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
.+.+++++|.++.+|. .+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++. |+
T Consensus 9 ~~~l~~~~~~l~~~p~-------~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-------GI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK-LT 79 (177)
T ss_dssp TTEEECCSSCCSSCCT-------TC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred CCEEEecCCCCccCCC-------CC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc-cC
Confidence 4567777777766532 11 357777777777777655556777778888888888777555555666665 77
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCC
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 241 (486)
+|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777777777766666777777888888888777555555677777888888877776543
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6e-16 Score=130.25 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=54.0
Q ss_pred CCCCEeeCcCCCCC-CCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFL-RELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
++|+.|++++|.+. +.+|..+..+++|++|+++ +|.+++. ..+.. +++|++|++++|.++.. +|..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~--l~~L~~L~Ls~n~i~~~------~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSI--ANLPK--LNKLKKLELSDNRVSGG------LEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCC--TTCCC--CTTCCEEECCSSCCCSC------THHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCc--hhhhc--CCCCCEEECCCCcccch------HHHHhh
Confidence 55666666666655 4555555666666666666 5555544 44444 55555555555555442 222222
Q ss_pred -cCccCeeecccCccccc-CCccccCCCCCCEEECcCCcCc
Q 048443 127 -STKIRHYLISKNNLTGE-IPSWICNLSSLYVLDLSDNNLS 165 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~i~ 165 (486)
+++|++|++++|++++. .+..+..+++|++|++++|.++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 44444444444444431 1234444444444444444444
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=7.1e-15 Score=140.95 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=169.3
Q ss_pred ccCcccceeeeehhc--cC---CChhhhhhccCCcccccCCcCCCC--------CCCCCEeeCcCCCCCCCCcccccCCC
Q 048443 6 CSELTRLTILLFYLM--TS---DSPFLDRLQRLSDFSGQIPPSLGN--------LNQLQWLDLAFNNFLRELPASIGSLS 72 (486)
Q Consensus 6 c~~l~~l~~~~~~~~--~~---~~~~l~~L~~~n~~~~~~p~~~~~--------l~~L~~L~Ls~n~~~~~~~~~~~~l~ 72 (486)
+.+|+.||++.+.+. .. ..+.+..+...++ ...+.+|.+ +++|+.|+|.+ ++..+.+.+|.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~--~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN--FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT--EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc--ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 456777777776644 11 1122111111111 222356777 99999999998 88888888999999
Q ss_pred CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC----CCCCCCCCCCCCcccc-c--------------------
Q 048443 73 SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY----FPRFDQHPTVLPWTTL-S-------------------- 127 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~----l~~~~~l~~l~p~~~~-~-------------------- 127 (486)
+|++|++. +|.+..+.+.+|.. +.++..+.+..+. ...+. +..+. +
T Consensus 125 ~L~~l~l~-~n~i~~i~~~aF~~--~~~l~~l~~~~~~~~~~~~~i~------~~~f~~~~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 125 NLKICQIR-KKTAPNLLPEALAD--SVTAIFIPLGSSDAYRFKNRWE------HFAFIEGEPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp TCCEEEBC-CSSCCEECTTSSCT--TTCEEEECTTCTHHHHTSTTTT------TSCEEESCCCEEEEEECTTCCHHHHHH
T ss_pred ccceEEcC-CCCccccchhhhcC--CCceEEecCcchhhhhcccccc------ccccccccccceeEEecCCCcHHHHHh
Confidence 99999999 99998888888887 8888888776632 12221 11111 2
Q ss_pred ------CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCC
Q 048443 128 ------TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGS 201 (486)
Q Consensus 128 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 201 (486)
.+++.+.+.++-...........+++|+.+++++|+++.....+|..+.. |+.+++.+| +..+.+.+|.+++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~-L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY-LLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC-CCEEECCcc-cceehHHHhhCCh
Confidence 23333434333111111111123789999999999999666677888887 999999998 8888889999999
Q ss_pred Ccc-EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEc
Q 048443 202 DLR-MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256 (486)
Q Consensus 202 ~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 256 (486)
+|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.+....+.+|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999 999998 777677889999999999999999999888889999999999863
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=6.7e-14 Score=137.24 Aligned_cols=246 Identities=9% Similarity=0.061 Sum_probs=162.8
Q ss_pred cCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccc
Q 048443 69 GSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWI 148 (486)
Q Consensus 69 ~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~ 148 (486)
..+..++.+.+. +.++.+...+|.+ + +|+.+++..+ ++.++ ..+|.-.+|+++.+.. .++...+.+|
T Consensus 110 ~~~~~l~~i~ip--~~i~~I~~~aF~~--~-~L~~i~l~~~-i~~I~------~~aF~~~~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 110 EILKGYNEIILP--NSVKSIPKDAFRN--S-QIAKVVLNEG-LKSIG------DMAFFNSTVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp EECSSCSEEECC--TTCCEECTTTTTT--C-CCSEEECCTT-CCEEC------TTTTTTCCCCEEECCT-TCCEECSSTT
T ss_pred EecCCccEEEEC--CccCEehHhhccc--C-CccEEEeCCC-ccEEC------HHhcCCCCceEEEeCC-CccEehHHHh
Confidence 345677777774 4666666666766 5 6888888766 65542 2233334688888875 6665666788
Q ss_pred cCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCC
Q 048443 149 CNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLE 228 (486)
Q Consensus 149 ~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 228 (486)
.++++|+.+++++|+++.....+|. ... |+.+.+.. .+..+...+|.++++|+.+++..| ++.....+|.+ .+|+
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~-L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAG-IEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCC-CSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecc-cCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 8888888888888888854444454 454 88888874 477777788888888888888875 55455667776 6788
Q ss_pred EEEccCCccccCCCccccCCCCCCEEEcCccCCC--ccccCChhhhhccccccccccccchhccccccccccccccccCC
Q 048443 229 ISDLRNNQINDTFPIWLGSLLELNILVLIQQLPC--FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFP 306 (486)
Q Consensus 229 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (486)
.+.+. +.+......+|.++++|+.+.+.++... ....++...|..++
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~------------------------------ 300 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP------------------------------ 300 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT------------------------------
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc------------------------------
Confidence 88884 4566666778888888888887765210 11234555454444
Q ss_pred CCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
+|+.+++. +.++......|.++++|+.++|..| ++.....+|.++ +|+.+++++|
T Consensus 301 ----------------------~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 301 ----------------------KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ----------------------TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred ----------------------cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 35555555 3355455566777777777777544 554555677777 7777777766
Q ss_pred CC
Q 048443 387 RL 388 (486)
Q Consensus 387 ~l 388 (486)
.+
T Consensus 356 ~~ 357 (401)
T 4fdw_A 356 TP 357 (401)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.9e-14 Score=124.82 Aligned_cols=128 Identities=21% Similarity=0.168 Sum_probs=112.2
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEEC
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDL 208 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 208 (486)
..+.+++++++++ .+|..+. ++|++|++++|++++..+..+..++. |++|++++|.+++..+..|..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCccc-ccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4578999999998 5665443 69999999999999766667788887 999999999999888888899999999999
Q ss_pred cCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 209 SHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 209 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 9999997777778999999999999999997777778899999999999984
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=5.2e-15 Score=128.21 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=87.7
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
+.+|+.|++++|.++.+|. ... .++|++|++++|.+++. ..|..+++|++|++++|++++..+..+..++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-------~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCceEEEeeCCCCchhHH-------hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 6677777777777765422 222 34777777777777754 4677777888888888887754444456677
Q ss_pred CCCcEEEccCccccccCCc--cccCCCCccEEECcCCccccccCcc----CcCCCCCCEEEccCCccc
Q 048443 177 GGLSVLSLQGKNFFGTTPD--TFMNGSDLRMVDLSHNLLQGKIPKS----LANCAVLEISDLRNNQIN 238 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 238 (486)
. |++|++++|.+.. +|. .+..+++|++|++++|.++ ..|.. +..+++|++|++++|.+.
T Consensus 89 ~-L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 D-LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp T-CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred C-CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6 7777777777754 333 5667777888888888776 44543 677777888877777654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=8.5e-17 Score=142.45 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=69.7
Q ss_pred hhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccc
Q 048443 92 WLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQ 170 (486)
Q Consensus 92 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 170 (486)
.+.. +++|++|++++|.++.+ | .+. +++|++|++++|.++ .+|..+..+++|++|++++|++++ +|
T Consensus 43 ~~~~--l~~L~~L~ls~n~l~~l-------~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~- 109 (198)
T 1ds9_A 43 TLST--LKACKHLALSTNNIEKI-------S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS- 109 (198)
T ss_dssp HHHH--TTTCSEEECSEEEESCC-------C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-
T ss_pred HHhc--CCCCCEEECCCCCCccc-------c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-
Confidence 4444 55555555555555442 2 222 455555555555555 444445555566666666666553 33
Q ss_pred hhhhcCCCCcEEEccCccccccCC-ccccCCCCccEEECcCCccccccCc----------cCcCCCCCCEEEccCCccc
Q 048443 171 CLGNFSGGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKIPK----------SLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 171 ~l~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~ 238 (486)
.+..++. |++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|++|| +|.++
T Consensus 110 ~~~~l~~-L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 110 GIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHH-SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccCCC-CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 4555554 6666666666554322 3455566666666666666544333 255666666665 44443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=6.8e-15 Score=127.51 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=54.0
Q ss_pred CCCCCCCCCEeeCcCCCCCCCCcccccCC-CCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCC
Q 048443 43 SLGNLNQLQWLDLAFNNFLRELPASIGSL-SSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
.+.++++|+.|++++|++... +. +..+ ++|++|+++ +|.+++. ..+.. +++|++|++++|.++.+|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls-~N~l~~~--~~l~~--l~~L~~L~Ls~N~l~~~~------ 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFS-DNEIRKL--DGFPL--LRRLKTLLVNNNRICRIG------ 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECC-SSCCCEE--CCCCC--CSSCCEEECCSSCCCEEC------
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECC-CCCCCcc--ccccc--CCCCCEEECCCCcccccC------
Confidence 345556666666666665533 32 3333 366666666 6666543 34444 555555555555555431
Q ss_pred Ccccc-cCccCeeecccCcccccCCc--cccCCCCCCEEECcCCcCc
Q 048443 122 PWTTL-STKIRHYLISKNNLTGEIPS--WICNLSSLYVLDLSDNNLS 165 (486)
Q Consensus 122 p~~~~-~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~i~ 165 (486)
+..+. +++|++|++++|+++ .+|. .+..+++|+.|++++|.++
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 11112 445555555555544 2332 3444444555555554444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=5.1e-17 Score=143.91 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=124.3
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcc------cccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPA------SIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQH 117 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~------~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l 117 (486)
+.....++.++++.+.+.+..|. .|..+++|++|+++ +|.+++ +| .+.. +++|++|++++|.++.+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls-~n~l~~-l~-~~~~--l~~L~~L~l~~n~l~~l--- 85 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEK-IS-SLSG--MENLRILSLGRNLIKKI--- 85 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECS-EEEESC-CC-CHHH--HTTCCEEEEEEEEECSC---
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECC-CCCCcc-cc-cccc--CCCCCEEECCCCCcccc---
Confidence 44456777777877777777666 88999999999999 999987 56 7888 99999999999999874
Q ss_pred CCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCccccc-chhhhcCCCCcEEEccCccccccCCc
Q 048443 118 PTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELL-QCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 118 ~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
|..+. +++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..++. |++|++++|.+.+..|.
T Consensus 86 ----~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~-L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 86 ----ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK-LEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ----SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT-CSEEEECSCHHHHHHHT
T ss_pred ----cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC-CCEEEecCCcccccccc
Confidence 44455 6899999999999985 44 68889999999999999985332 46778887 99999999999877654
Q ss_pred c----------ccCCCCccEEECcCCccc
Q 048443 196 T----------FMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 196 ~----------~~~l~~L~~L~L~~N~l~ 214 (486)
. +..+++|+.|| +|.++
T Consensus 159 ~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 159 NNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3 77889999987 66665
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.9e-13 Score=117.50 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=62.3
Q ss_pred CeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcC
Q 048443 131 RHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210 (486)
Q Consensus 131 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 210 (486)
+++++++|.++ .+|..+. ++|++|+|++|++++..|..|..++. |++|++++|++++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQ-LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCccc-CCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555555 3443332 45556666666665554555555554 66666666666555555566666677777777
Q ss_pred CccccccCccCcCCCCCCEEEccCCcccc
Q 048443 211 NLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 211 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
|.+++..+..|..+++|++|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 77665555556667777777777776653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=4e-13 Score=115.48 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCC
Q 048443 100 NFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGL 179 (486)
Q Consensus 100 ~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L 179 (486)
+.+.+++++|.++++|. .+ .++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++ |
T Consensus 10 ~~~~l~~s~n~l~~ip~-------~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~-L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-------GI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-L 80 (170)
T ss_dssp ETTEEECTTSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-C
T ss_pred CCCEEEeCCCCcCccCc-------cC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC-C
Confidence 35688888888888653 22 378899999999999877888999999999999999999766666788887 9
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCcccc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQG 215 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (486)
++|++++|++++..+..|..+++|++|+|++|.++.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999999998888889999999999999998873
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=4e-13 Score=115.90 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=57.7
Q ss_pred CeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcC
Q 048443 131 RHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSH 210 (486)
Q Consensus 131 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 210 (486)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..++. |++|++++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN-LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcC-CCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34455555554 3343332 45555555555555444555555554 55555555555554444555666666666666
Q ss_pred CccccccCccCcCCCCCCEEEccCCccc
Q 048443 211 NLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 211 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|.+++..+..|..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444666666666666666665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=8.8e-13 Score=113.71 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=87.3
Q ss_pred CcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCc
Q 048443 101 FSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLS 180 (486)
Q Consensus 101 L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~ 180 (486)
-+.+++++|.++.+|. .+ .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..++. |+
T Consensus 14 ~~~l~~~~n~l~~iP~-------~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~-L~ 84 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-------GI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ-LT 84 (174)
T ss_dssp SSEEECCSSCCSSCCS-------CC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CC
T ss_pred CcEEEeCCCCCCccCC-------Cc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch-hh
Confidence 3678888888887643 22 378899999999998777888999999999999999998655555678887 99
Q ss_pred EEEccCccccccCCccccCCCCccEEECcCCccc
Q 048443 181 VLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 181 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
+|++++|++.+..+..|..+++|++|+|++|.+.
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999999998877777889999999999999887
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.42 E-value=9.1e-12 Score=122.35 Aligned_cols=204 Identities=8% Similarity=-0.049 Sum_probs=113.6
Q ss_pred ccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCC
Q 048443 36 FSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFD 115 (486)
Q Consensus 36 ~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~ 115 (486)
++..-..+|.++.+|+.+.|.. .+..+...+|.++++|+.+++. . .++.+...+|.+ +.+|+.+.+..+ +..++
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp-~-~l~~I~~~aF~~--c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIP-D-SVKMIGRCTFSG--CYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTT--CTTCCCCCCCTT-CCEEC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeC-C-CceEccchhhcc--cccchhhcccCc-eeeec
Confidence 4444456889999999999974 4677777889999999999986 4 366556667777 888888776644 33221
Q ss_pred CCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCc
Q 048443 116 QHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 116 ~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
...|.-..+....+.. .+......+|.++.+|+.+.+.++... ....+|..... |+.+++..+ +..+...
T Consensus 133 ------~~aF~~~~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~-L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 133 ------VEAFKGCDFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGK-LKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp ------TTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTT-CCBCCCCTT-CCEECTT
T ss_pred ------ceeeecccccccccCc-cccccchhhhcccCCCcEEecCCccce-eccccccCCCC-ceEEEcCCC-ceEeCch
Confidence 1122211122222211 122233445666666666666544322 33444555554 666666544 4444455
Q ss_pred cccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCc
Q 048443 196 TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 258 (486)
+|.++..|+.+.+..+... +........+|+.+.+... +.......|..+..++.+.+..
T Consensus 203 ~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 203 CFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp TTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred hhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCC
Confidence 5666666666666554332 2222333455666555432 2223344555556666655544
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.42 E-value=1.5e-11 Score=120.88 Aligned_cols=294 Identities=10% Similarity=-0.006 Sum_probs=177.9
Q ss_pred CCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccC
Q 048443 60 FLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKN 138 (486)
Q Consensus 60 ~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n 138 (486)
++.+...+|.++.+|+.+.+. . .++.+...+|.+ +.+|+.+++..+ ++.++ ...|. +.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp-~-~i~~I~~~aF~~--c~~L~~i~lp~~-l~~I~------~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIP-S-TVREIGEFAFEN--CSKLEIINIPDS-VKMIG------RCTFSGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECC-T-TCCEECTTTTTT--CTTCCEECCCTT-CCEEC------TTTTTTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeC-C-CccCcchhHhhC--CCCCcEEEeCCC-ceEcc------chhhcccccchhhcccCc
Confidence 345556788888889888885 3 477666777887 888988888755 55442 22333 677777777654
Q ss_pred cccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccC
Q 048443 139 NLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP 218 (486)
Q Consensus 139 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 218 (486)
+......+|.+...++....... ......+|..... |+.+.+..+ +..+...+|.++.+|+.+++..+ ++....
T Consensus 128 -l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~-L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~ 201 (394)
T 4fs7_A 128 -LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCES-LEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRD 201 (394)
T ss_dssp -CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECT
T ss_pred -eeeecceeeecccccccccCccc--cccchhhhcccCC-CcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCc
Confidence 44355567777654443333222 2233456777776 888888754 34466677888888888888776 444566
Q ss_pred ccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccccccc
Q 048443 219 KSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFS 298 (486)
Q Consensus 219 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 298 (486)
.+|.++..|+.+.+..+... +...+....+|+.+.+.. ....+....|..+..++.+.+..+... -....+..
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~----~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~ 274 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPD----SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN 274 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECT----TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT
T ss_pred hhhccccccceeecCCCceE--eehhhcccCCCceEEECC----CceecccccccccccceeEEcCCCcce-eecccccc
Confidence 77888888888877766442 233344456788877755 334455566777777776665543110 00000000
Q ss_pred ccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCC
Q 048443 299 FDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNL 378 (486)
Q Consensus 299 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 378 (486)
...+.........+.......+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|
T Consensus 275 -------~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 275 -------CSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp -------CTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred -------ccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 011122222222222222333566777777654 55455666777788888887644 654556677777888
Q ss_pred CEEeCCCC
Q 048443 379 ESLDLSKN 386 (486)
Q Consensus 379 ~~L~Ls~N 386 (486)
+.+++..|
T Consensus 346 ~~i~lp~~ 353 (394)
T 4fs7_A 346 SNINFPLS 353 (394)
T ss_dssp CEECCCTT
T ss_pred CEEEECcc
Confidence 88777655
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.9e-14 Score=139.68 Aligned_cols=167 Identities=17% Similarity=0.130 Sum_probs=83.6
Q ss_pred CCCCeeccCCCCcccccCCchhccc---cCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcc
Q 048443 72 SSLERLDTFPPMKIHGNIPKWLLNP---SMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSW 147 (486)
Q Consensus 72 ~~L~~L~L~~~n~i~~~~p~~~~~~---~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~ 147 (486)
+.|++|+++ +|.++......+... ..++|++|+|++|.++... ...... +++|++|+|++|.++......
T Consensus 72 ~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLA-GVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----LRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp TTCCEEECT-TSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----HHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred hhCCEEEec-CCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----HHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 445555555 555543332222220 0245666666666554210 000011 445666666666665322222
Q ss_pred c-----cCCCCCCEEECcCCcCccc----ccchhhhcCCCCcEEEccCccccccC----CccccCCCCccEEECcCCccc
Q 048443 148 I-----CNLSSLYVLDLSDNNLSGE----LLQCLGNFSGGLSVLSLQGKNFFGTT----PDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 148 ~-----~~l~~L~~L~Ls~N~i~~~----~~~~l~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~ 214 (486)
+ ...++|++|+|++|.++.. ++..+...+. |++|+|++|.+.+.. ...+...++|++|+|++|.++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 2 2345666666666666532 2223344444 666666666665422 334455566777777777765
Q ss_pred cc----cCccCcCCCCCCEEEccCCccccCCCccc
Q 048443 215 GK----IPKSLANCAVLEISDLRNNQINDTFPIWL 245 (486)
Q Consensus 215 ~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 245 (486)
.. ++.++...++|++|+|++|.|.+.....+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 42 22334455677777777777664433333
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.1e-13 Score=134.51 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=34.9
Q ss_pred CccCeeecccCcccc----cCCccccCCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEccCccccccC----Cc
Q 048443 128 TKIRHYLISKNNLTG----EIPSWICNLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQGKNFFGTT----PD 195 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~~n~i~~~~----~~ 195 (486)
++|++|+|++|.++. .++..+..+++|++|+|++|.+++.. +..+...+. |++|++++|.+++.. ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~-L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC-CCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC-cCeEECCCCCCCHHHHHHHHH
Confidence 344455555554432 12222334444555555555444211 222233332 455555554443321 11
Q ss_pred cccCCCCccEEECcCCccc
Q 048443 196 TFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~ 214 (486)
.+...++|++|+|++|.++
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 2223344455555555444
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=1.3e-11 Score=119.02 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=80.0
Q ss_pred cccccCCcCCCCCCCCCEeeCcC-CCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCC
Q 048443 35 DFSGQIPPSLGNLNQLQWLDLAF-NNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPR 113 (486)
Q Consensus 35 ~~~~~~p~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~ 113 (486)
++++ +|. +..+++|+.|+|++ |++.+..+..|.++++|++|+|+ +|++++..|..|.+ +++|++|+|++|+|+.
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~--l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHF--TPRLSRLNLSFNALES 94 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGS--CSCCCEEECCSSCCSC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcC--CcCCCEEeCCCCccce
Confidence 5554 787 99999999999996 99988888999999999999999 99999999999999 9999999999999988
Q ss_pred CCCCCCCCCcccccCccCeeecccCccc
Q 048443 114 FDQHPTVLPWTTLSTKIRHYLISKNNLT 141 (486)
Q Consensus 114 ~~~l~~l~p~~~~~~~L~~L~Ls~n~l~ 141 (486)
+|. ..+....|++|+|.+|.+.
T Consensus 95 ~~~------~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 95 LSW------KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCS------TTTCSCCCCEEECCSSCCC
T ss_pred eCH------HHcccCCceEEEeeCCCcc
Confidence 642 2333223777777777776
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=3.1e-10 Score=111.37 Aligned_cols=294 Identities=12% Similarity=0.053 Sum_probs=154.5
Q ss_pred CcCCCCCC-CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCC---cccccCCchhccccCCCCcEEEccCCCCCCCCC
Q 048443 41 PPSLGNLN-QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPM---KIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQ 116 (486)
Q Consensus 41 p~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n---~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~ 116 (486)
..+|.++. .|+.+.+.. .+..+...+|.++++|+.+.+. .| .++.+-..+|.. +.+|+.+.+..+ ++.++
T Consensus 56 ~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~-~n~p~~l~~Ig~~aF~~--c~~L~~i~~~~~-~~~I~- 129 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQ-DNKPSCVKKIGRQAFMF--CSELTDIPILDS-VTEID- 129 (394)
T ss_dssp TTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEG-GGCCCCCCEECTTTTTT--CTTCCBCGGGTT-CSEEC-
T ss_pred HhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeec-CCCCCeeeEechhhchh--cccceeeccCCc-cceeh-
Confidence 45677664 477777764 3566667778888888887775 43 255455566666 777777666543 33331
Q ss_pred CCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCc
Q 048443 117 HPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPD 195 (486)
Q Consensus 117 l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~ 195 (486)
...+. +.+|+.+.+..+- +.....+|..+..|+.+.+..+ ++.....+|.. .. |+.+.+..+- ......
T Consensus 130 -----~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~-l~~i~ip~~~-~~i~~~ 199 (394)
T 4gt6_A 130 -----SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TA-LTQIHIPAKV-TRIGTN 199 (394)
T ss_dssp -----TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CC-CSEEEECTTC-CEECTT
T ss_pred -----hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cc-eeEEEECCcc-cccccc
Confidence 12333 6777777776543 3355566777777777777654 33233344433 33 7777765432 234445
Q ss_pred cccCCCCccEEECcCCccccccCcc--------------CcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCC
Q 048443 196 TFMNGSDLRMVDLSHNLLQGKIPKS--------------LANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLP 261 (486)
Q Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~p~~--------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~ 261 (486)
+|..+.+++......+.... .... +.....+..+.+.. .+......+|..+..|+.+.+..+
T Consensus 200 af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-- 275 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-- 275 (394)
T ss_dssp TTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT--
T ss_pred hhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc--
Confidence 56666666665544433221 1100 11112223333321 122233344555555555555432
Q ss_pred CccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccccccc
Q 048443 262 CFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFD 341 (486)
Q Consensus 262 ~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 341 (486)
...++...|..+..|+.+.+... +.. +.......+.+|+.+++..+ ++
T Consensus 276 --~~~I~~~aF~~c~~L~~i~l~~~--i~~---------------------------I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 276 --VVSIGTGAFMNCPALQDIEFSSR--ITE---------------------------LPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp --CCEECTTTTTTCTTCCEEECCTT--CCE---------------------------ECTTTTTTCTTCCEEECCTT-CC
T ss_pred --cceecCcccccccccccccCCCc--ccc---------------------------cCceeecCCCCcCEEEeCCc-cc
Confidence 22344444555555554443321 000 00001111345666666543 44
Q ss_pred ccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 342 GEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 342 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.....+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++.
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 345566777777777777544 554555677777777777777664
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.5e-11 Score=117.11 Aligned_cols=86 Identities=20% Similarity=0.080 Sum_probs=41.5
Q ss_pred cCccCeeeccc-CcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 127 STKIRHYLISK-NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 127 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
+++|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..++. |+.|+|++|++++..+..|..++ |+.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR-LSRLNLSFNALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC-CCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcC-CCEEeCCCCccceeCHHHcccCC-ceE
Confidence 34455555553 5555444444555555555555555555444444444444 55555555555444433333333 445
Q ss_pred EECcCCccc
Q 048443 206 VDLSHNLLQ 214 (486)
Q Consensus 206 L~L~~N~l~ 214 (486)
|+|.+|.+.
T Consensus 108 l~l~~N~~~ 116 (347)
T 2ifg_A 108 LVLSGNPLH 116 (347)
T ss_dssp EECCSSCCC
T ss_pred EEeeCCCcc
Confidence 555544443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=3.4e-09 Score=103.93 Aligned_cols=299 Identities=8% Similarity=0.054 Sum_probs=178.6
Q ss_pred cccccCCcCCCCCCCCCEeeCcCCC---CCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 35 DFSGQIPPSLGNLNQLQWLDLAFNN---FLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 35 ~~~~~~p~~~~~l~~L~~L~Ls~n~---~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
.++..-..+|.++.+|+.+.++.|. +..+...+|.++.+|+.+.+. +.++.+....|.. +.+|+.+.+..+ +
T Consensus 74 svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~--~~~~~I~~~aF~~--c~~L~~i~lp~~-~ 148 (394)
T 4gt6_A 74 TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL--DSVTEIDSEAFHH--CEELDTVTIPEG-V 148 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG--TTCSEECTTTTTT--CTTCCEEECCTT-C
T ss_pred CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC--Cccceehhhhhhh--hcccccccccce-e
Confidence 3444445689999999999998764 555667789999999998875 3466566677777 899999998754 3
Q ss_pred CCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc
Q 048443 112 PRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF 190 (486)
Q Consensus 112 ~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~ 190 (486)
..++ ...+. +..|+.+.+..+ ++.....+|.+ ..|+.+.+..+-.. ....+|..... ++......+...
T Consensus 149 ~~I~------~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~-l~~~~~~~~~~~ 218 (394)
T 4gt6_A 149 TSVA------DGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFA-LSTITSDSESYP 218 (394)
T ss_dssp CEEC------TTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTT-CCEEEECCSSSC
T ss_pred eeec------ccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccc-cceecccccccc
Confidence 3331 22333 677888887665 44344455554 56787777654332 33445555554 666555433322
Q ss_pred ccCCc-------------cccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcC
Q 048443 191 GTTPD-------------TFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI 257 (486)
Q Consensus 191 ~~~~~-------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 257 (486)
..... .+.....+....+..+ ++.....+|.++.+|+.+.+.++.. .....+|.+++.|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred cccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCcccccccccccccCC
Confidence 11100 0112233444444332 3334455677777777777765543 3455667777777777775
Q ss_pred ccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEccc
Q 048443 258 QQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSS 337 (486)
Q Consensus 258 ~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 337 (486)
. ....++...|..+.+|+.+.+..+ +. .+ .......+.+|+.+.+..
T Consensus 297 ~----~i~~I~~~aF~~c~~L~~i~lp~~--v~-----~I----------------------~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 297 S----RITELPESVFAGCISLKSIDIPEG--IT-----QI----------------------LDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp T----TCCEECTTTTTTCTTCCEEECCTT--CC-----EE----------------------CTTTTTTCTTCCEEEECT
T ss_pred C----cccccCceeecCCCCcCEEEeCCc--cc-----Ee----------------------hHhHhhCCCCCCEEEECc
Confidence 4 445667777777777777666442 00 00 011112246788888865
Q ss_pred ccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 338 NRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 338 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+ ++.....+|.++++|+.+++.++... ..++....+|+.+.+..|.
T Consensus 344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 4 66566778999999999999988654 2456777888888776553
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=5.9e-08 Score=94.51 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=43.6
Q ss_pred cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
+.+|+.+++.++.++......|.++.+|+.++|..+ ++.....+|.++++|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 456788888777777566677888888888888754 66455668888888888877543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=4.2e-07 Score=88.43 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
..++.+.+..+ +.......|..+++|+.+.+.++.++.....+|.++.+|+.++|..+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 44666766543 44455667899999999999999998677789999999999999755
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=2.4e-09 Score=102.93 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=26.0
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCcccc--CCCCCCEEECc
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWIC--NLSSLYVLDLS 160 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls 160 (486)
+++|+.|++++|.-..+ +. +..++|++|++..+.++......+. .+++|+.|+|+
T Consensus 171 ~P~L~~L~L~g~~~l~l-------~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSI-------GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCCEEEEECCBTCBC-------CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEeCCCCcee-------cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 56666666665521111 11 1245566666665555432222222 45666666653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=9e-09 Score=98.96 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred hhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCc--CCCCCCEEEcc
Q 048443 172 LGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLA--NCAVLEISDLR 233 (486)
Q Consensus 172 l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~ 233 (486)
+..++. |+.|++++|.-.. .+. +. +++|++|++..+.++......+. .+++|++|+|+
T Consensus 168 l~~~P~-L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPL-LNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTT-CCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCC-CcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 334443 6666665542111 111 22 45566666655554432222222 45556655553
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=2.9e-08 Score=86.12 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=46.0
Q ss_pred cccCCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEccCcccccc----CCccccCCCCccEEEC--cCCccccc
Q 048443 147 WICNLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDL--SHNLLQGK 216 (486)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L--~~N~l~~~ 216 (486)
.+...++|++|+|++|.+.... ...+...+. |++|+|++|.|... +...+...++|++|+| ++|.++..
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~-L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT-LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS-CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCC-cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 3444455666666666554321 222233333 55566665555432 2233444556666666 55666532
Q ss_pred ----cCccCcCCCCCCEEEccCCccc
Q 048443 217 ----IPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 217 ----~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
+...+...++|++|++++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233444566666666666653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=6.6e-08 Score=88.21 Aligned_cols=63 Identities=25% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCC--CCCEEECcCCcCcc
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLS--SLYVLDLSDNNLSG 166 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~i~~ 166 (486)
+++|+.|+|++|+|+.++. ++..+. +++|++|+|++|++++. ..+..+. +|++|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~----l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDD----MSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGG----GTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCcc----chhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 5666666666666665433 222233 45555555555555532 1122222 55555555555543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=9.6e-08 Score=82.77 Aligned_cols=15 Identities=20% Similarity=0.043 Sum_probs=7.5
Q ss_pred CCCCCCCCEeeCcCC
Q 048443 44 LGNLNQLQWLDLAFN 58 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n 58 (486)
+...+.|++|+|++|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 344455555555555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=2.1e-07 Score=84.81 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=20.9
Q ss_pred CCCCCCEEECcCCcCcc--cccchhhhcCCCCcEEEccCccccc
Q 048443 150 NLSSLYVLDLSDNNLSG--ELLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 150 ~l~~L~~L~Ls~N~i~~--~~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
++++|+.|+|++|++++ .++..+..+++ |+.|+|++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~-L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPN-LKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTT-CCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCC-CCEEECCCCccCC
Confidence 45556666666665554 22334444444 5555555555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=6.5e-06 Score=69.56 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=38.1
Q ss_pred ccCeeecccCcccccCCccccCCCCCCEEECcCCc-Ccccccchhhhc---CCCCcEEEccCcc-ccccCCccccCCCCc
Q 048443 129 KIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNN-LSGELLQCLGNF---SGGLSVLSLQGKN-FFGTTPDTFMNGSDL 203 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~l~~~---~~~L~~L~L~~n~-i~~~~~~~~~~l~~L 203 (486)
.|++||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ..+|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666666554333345566666666666663 443222223221 0015555555542 333222223334444
Q ss_pred cEEECcCC
Q 048443 204 RMVDLSHN 211 (486)
Q Consensus 204 ~~L~L~~N 211 (486)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=5.7e-06 Score=69.92 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=43.8
Q ss_pred CCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc-ccccCCccccCC----CCccEEECcCCc-cccccCccCcCCC
Q 048443 152 SSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN-FFGTTPDTFMNG----SDLRMVDLSHNL-LQGKIPKSLANCA 225 (486)
Q Consensus 152 ~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~ 225 (486)
..|+.||++++.++..-...+..++. |+.|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~-L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQY-VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSC-CCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCC-CCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 45667777776666544444555554 6666666663 443322223332 246666666653 4433223344556
Q ss_pred CCCEEEccCCc
Q 048443 226 VLEISDLRNNQ 236 (486)
Q Consensus 226 ~L~~L~L~~N~ 236 (486)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.45 E-value=6.6e-05 Score=64.66 Aligned_cols=82 Identities=11% Similarity=0.156 Sum_probs=36.0
Q ss_pred CccCeeecccC-cccc----cCCccccCCCCCCEEECcCCcCccccc----chhhhcCCCCcEEEccCccccccC----C
Q 048443 128 TKIRHYLISKN-NLTG----EIPSWICNLSSLYVLDLSDNNLSGELL----QCLGNFSGGLSVLSLQGKNFFGTT----P 194 (486)
Q Consensus 128 ~~L~~L~Ls~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~----~~l~~~~~~L~~L~L~~n~i~~~~----~ 194 (486)
+.|++|+|++| +|.. .+..++..-+.|+.|+|++|+|..... ..+..-.. |+.|+|++|.|.... .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~t-L~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS-LRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS-CCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCc-cCeEecCCCcCCHHHHHHHH
Confidence 34455555543 4432 122334444556666666665553222 22222232 555555555554321 1
Q ss_pred ccccCCCCccEEECcC
Q 048443 195 DTFMNGSDLRMVDLSH 210 (486)
Q Consensus 195 ~~~~~l~~L~~L~L~~ 210 (486)
.++..-+.|++|+|++
T Consensus 120 ~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTTTCCCSEEECCC
T ss_pred HHHhhCCceeEEECCC
Confidence 2233334455555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.00061 Score=54.66 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=27.4
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcc
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKI 85 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i 85 (486)
.+|..+. ++|+.|+|++|+|..+.+..|..+++|++|+|. +|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG-ANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec-CCCe
Confidence 4454433 357777777777766666666666666666666 5544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.08 E-value=0.0007 Score=54.34 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=33.3
Q ss_pred EEEccccccc-ccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 332 GIILSSNRFD-GEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 332 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5556666664 23443322 356777777777775555566777777777777776
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.95 E-value=0.00052 Score=59.01 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=4.8
Q ss_pred CCCCEeeCcC
Q 048443 48 NQLQWLDLAF 57 (486)
Q Consensus 48 ~~L~~L~Ls~ 57 (486)
+.|++|+|++
T Consensus 41 ~~L~~L~L~~ 50 (197)
T 1pgv_A 41 TDLKEVNINN 50 (197)
T ss_dssp SSCCEEECTT
T ss_pred CCccEEECCC
Confidence 4444555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.42 E-value=14 Score=27.21 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=32.7
Q ss_pred cccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCC
Q 048443 188 NFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNN 235 (486)
Q Consensus 188 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 235 (486)
.++.+...+|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344555667888888888888765 44355667888888888877653
No 166
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=55.32 E-value=5.4 Score=26.51 Aligned_cols=6 Identities=0% Similarity=-0.019 Sum_probs=2.4
Q ss_pred cchhcc
Q 048443 462 GIVRWF 467 (486)
Q Consensus 462 ~~~~~~ 467 (486)
+.+.|.
T Consensus 31 cvkcrh 36 (70)
T 2klu_A 31 SVRSRH 36 (70)
T ss_dssp HHHSSC
T ss_pred hhHHHH
Confidence 334443
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.10 E-value=13 Score=27.42 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=14.8
Q ss_pred CCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
+|.++.+|+.+.|-.+ +..+...+|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 4444444444444322 23333344444444444444
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=48.52 E-value=8.2 Score=22.79 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=5.1
Q ss_pred hhhhhhhhhHHH
Q 048443 446 TGRIVVGLVFGF 457 (486)
Q Consensus 446 ~~~~~~~~~~~~ 457 (486)
+.+++++.++++
T Consensus 13 IAGiVvG~v~gv 24 (38)
T 2k1k_A 13 IVAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeeehHHHHHH
Confidence 344444444333
No 169
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.93 E-value=37 Score=23.80 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.6
Q ss_pred hhhhhhh
Q 048443 444 GYTGRIV 450 (486)
Q Consensus 444 ~~~~~~~ 450 (486)
+++.+++
T Consensus 16 gvi~gil 22 (79)
T 2knc_B 16 SVMGAIL 22 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 170
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=21.79 E-value=50 Score=18.65 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.0
Q ss_pred hhhhhhhHHHHh
Q 048443 448 RIVVGLVFGFNF 459 (486)
Q Consensus 448 ~~~~~~~~~~~~ 459 (486)
..++++++++..
T Consensus 11 t~i~gl~vif~~ 22 (40)
T 2l9u_A 11 TVIAGLVVIFMM 22 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
Done!