BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048445
         (138 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LGE3|FLP1_ORYSJ Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp.
           japonica GN=RAA1 PE=1 SV=1
          Length = 109

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 78/124 (62%), Gaps = 16/124 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++         K+    GTA A G R + LV  P+ QV+ SYA L
Sbjct: 1   MSGVWVF-KNGVVRLVE---------KQQATAGTAVA-GGRRKALVHTPSGQVVSSYAAL 49

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E RLT LGW RY+++ S    L QFHK   S  LISLP +F+ F S+HMYDIVVKNR  F
Sbjct: 50  EARLTALGWERYYEDPS----LFQFHK-RGSLDLISLPADFSAFSSVHMYDIVVKNRDSF 104

Query: 121 EVRD 124
            V D
Sbjct: 105 RVVD 108


>sp|Q5Q0B3|FLP1_ARATH Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana
           GN=FLP1 PE=2 SV=2
          Length = 124

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 81/126 (64%), Gaps = 3/126 (2%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPG-ARPRVLVFLPTNQVIRSYAE 59
           MSGVWVF+KNGV RL++NP  +S                  R ++LV LP+++V+ SY  
Sbjct: 1   MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 60

Query: 60  LEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSF 119
           LE+ L  LGW RY+ +  +++ LLQFHK   S  LISLP +F+ F SIHMYDIVVKN + 
Sbjct: 61  LEKILKNLGWERYY-SGDNTDHLLQFHK-RTSIDLISLPRDFSKFNSIHMYDIVVKNPNV 118

Query: 120 FEVRDL 125
           F VRD+
Sbjct: 119 FHVRDM 124


>sp|O24340|FPF1_SINAL Flowering-promoting factor 1 OS=Sinapis alba GN=FPF1 PE=2 SV=1
          Length = 110

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 78/124 (62%), Gaps = 16/124 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP           Q G  T   +R +V+V+LPT +VI SY+ L
Sbjct: 1   MSGVWVF-KNGVIRLVENPN----------QSGGDT--NSRRKVMVYLPTGEVISSYSTL 47

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQ L  LGW RY     +   LLQFHK   S  LISLP +F  F S++MYDIVVKN ++F
Sbjct: 48  EQILRSLGWERYFGGGDTD--LLQFHK-RSSIDLISLPKDFTKFSSVYMYDIVVKNPNYF 104

Query: 121 EVRD 124
            VRD
Sbjct: 105 HVRD 108


>sp|O23624|FPF1_ARATH Flowering-promoting factor 1 OS=Arabidopsis thaliana GN=FPF1 PE=2
           SV=1
          Length = 110

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 78/124 (62%), Gaps = 16/124 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP           Q G+ T    R +V+V+LPT +V+ SY+ L
Sbjct: 1   MSGVWVF-KNGVIRLVENPN----------QSGSDTQ--NRRKVMVYLPTGEVVSSYSTL 47

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQ L  LGW RY     +   LLQFHK   S  LISLP +F  F S++MYDIVVKN ++F
Sbjct: 48  EQILQSLGWERYFGGGDTD--LLQFHK-RSSIDLISLPRDFTKFNSVYMYDIVVKNPNYF 104

Query: 121 EVRD 124
            VRD
Sbjct: 105 HVRD 108


>sp|Q9LXB5|FLP2_ARATH Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana
           GN=FLP2 PE=2 SV=1
          Length = 112

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 14/125 (11%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF+ NGV RL++NP +           G +T    R  VLV+LPT + + SY+ L
Sbjct: 1   MSGVWVFN-NGVIRLVENPNQSG---------GVSTQSHGRRNVLVYLPTGEAVSSYSSL 50

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQ L  LGW RY    S    L+Q+HK   S  LISLP +F+ F S++MYDIVVKN + F
Sbjct: 51  EQILRSLGWERYFSGDSD---LIQYHK-RSSIDLISLPRDFSKFNSVYMYDIVVKNPNSF 106

Query: 121 EVRDL 125
            VRD 
Sbjct: 107 HVRDF 111


>sp|Q8LR63|FLP2_ORYSJ Flowering-promoting factor 1-like protein 2 OS=Oryza sativa subsp.
           japonica GN=Os01g0933500 PE=2 SV=1
          Length = 127

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 6/129 (4%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF +NGV +L++NP   +         G     G R + L+ +PT +V+ SYA L
Sbjct: 1   MSGVWVF-RNGVVKLVENPPASANSGGGGGGGGGGGGGGIRRKALLHMPTGEVVTSYASL 59

Query: 61  EQRLTELGWSRYHDNSSSSNR----LLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKN 116
           E++L  LGW RY+     +      +LQFHK   S  LISLP +F+ F S+HMYDIVVKN
Sbjct: 60  ERKLAALGWERYYSGGGGAAAAAAMMLQFHK-RSSVDLISLPKDFSQFGSVHMYDIVVKN 118

Query: 117 RSFFEVRDL 125
           R  F V D+
Sbjct: 119 RDAFRVIDV 127


>sp|Q0E1D7|FLP3_ORYSJ Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp.
           japonica GN=Os02g0460200 PE=2 SV=1
          Length = 122

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 12/124 (9%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           M+GVWVF K+G+ R ++NP  E                G R +VLV +P+ +V+ SY  L
Sbjct: 1   MAGVWVF-KDGIVRRVENPGSEE------SSSAGDGGGGGRRKVLVHVPSGEVVASYEVL 53

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E+RL ELGW RY  +      LLQFH+   + HLIS+P +F+ F+ +HMYDIVVK R+ F
Sbjct: 54  ERRLRELGWERYLTDPC----LLQFHQ-RSTVHLISVPRDFSKFKLVHMYDIVVKTRNVF 108

Query: 121 EVRD 124
           EVRD
Sbjct: 109 EVRD 112


>sp|A3BNA1|FLP5_ORYSJ Flowering-promoting factor 1-like protein 5 OS=Oryza sativa subsp.
           japonica GN=Os07g0671000 PE=3 SV=1
          Length = 105

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 24/124 (19%)

Query: 2   SGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAELE 61
            GVWVF  NGV  L +  T                      + LV + T++VIRS   LE
Sbjct: 4   GGVWVFRNNGVMELEEQATSR--------------------KALVHVATSEVIRSTEALE 43

Query: 62  QRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFE 121
           +RL  LGW RY+++ ++    LQ H+ + SA LIS+P +F+ FRS HMYD+VVKNR  F+
Sbjct: 44  RRLGALGWERYYEDRAT----LQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFK 99

Query: 122 VRDL 125
           V DL
Sbjct: 100 VVDL 103


>sp|Q0JEF5|FLP4_ORYSJ Flowering-promoting factor 1-like protein 4 OS=Oryza sativa subsp.
           japonica GN=Os04g0282400 PE=2 SV=1
          Length = 118

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 16/132 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           M+GVWVF+   V R          + + P +       G   +VLV +P+++V+ SY  L
Sbjct: 1   MAGVWVFEDGMVRRA---------DSEAPSRGRGVGGGGGGGKVLVHVPSSEVVTSYEVL 51

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E+RL ELGW RY ++      LLQFH+   + HLIS+P +F+  + +HMYD+VVK R+ F
Sbjct: 52  ERRLRELGWERYLNDPC----LLQFHQ-RSTVHLISVPRDFSRLKLVHMYDVVVKTRNVF 106

Query: 121 EVRD--LIMSPP 130
           EVRD     SPP
Sbjct: 107 EVRDAATTASPP 118


>sp|Q1MRV8|SYT_LAWIP Threonine--tRNA ligase OS=Lawsonia intracellularis (strain
           PHE/MN1-00) GN=thrS PE=3 SV=1
          Length = 642

 Score = 34.3 bits (77), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 54  IRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLP 98
           + SY EL QR  ELG    H+ S   + LL+  + ++D AH+I +P
Sbjct: 342 LHSYRELPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICMP 387


>sp|A1VBB4|SYT_DESVV Threonine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris
           (strain DP4) GN=thrS PE=3 SV=1
          Length = 644

 Score = 34.3 bits (77), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 47  FLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNFAN 103
            L     IRSY +L +R  ELG    H+ S   + LL+  + ++D AH+I  P    +
Sbjct: 337 MLIYRSAIRSYRDLPKRFFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICRPDQLED 394


>sp|Q728R5|SYT_DESVH Threonine--tRNA ligase OS=Desulfovibrio vulgaris (strain
           Hildenborough / ATCC 29579 / NCIMB 8303) GN=thrS PE=3
           SV=1
          Length = 644

 Score = 34.3 bits (77), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 47  FLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNFAN 103
            L     IRSY +L +R  ELG    H+ S   + LL+  + ++D AH+I  P    +
Sbjct: 337 MLIYRSAIRSYRDLPKRFFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICRPDQLED 394


>sp|C0SG20|UTP25_PARBP U3 small nucleolar RNA-associated protein 25 OS=Paracoccidioides
           brasiliensis (strain Pb03) GN=UTP25 PE=3 SV=1
          Length = 735

 Score = 33.9 bits (76), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 41  RPRVLVFLPTNQ----VIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLIS 96
           RP+VL+ LPT Q    V+ S ++L Q   +   +R+H+  S+++  L  HK +D   L  
Sbjct: 326 RPKVLIILPTRQACVRVMESISKLYQPEQQENKARFHETFSAADDKLWEHKPDDFRELFG 385

Query: 97  LPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSPP 130
              +      +      +K  S F   D+I++ P
Sbjct: 386 GNDDDMFRLGLKFTRKTIKYFSQFYNSDIILASP 419


>sp|B1NKT7|RDRP_ROTHT RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
           Kingdom/ST3/1975 G4-P2A[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
           PE=3 SV=1
          Length = 1088

 Score = 33.9 bits (76), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L+    +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSY 503


>sp|C1G2D1|UTP25_PARBD U3 small nucleolar RNA-associated protein 25 OS=Paracoccidioides
           brasiliensis (strain Pb18) GN=UTP25 PE=3 SV=1
          Length = 735

 Score = 33.5 bits (75), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 41  RPRVLVFLPTNQ----VIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLIS 96
           RP+VL+ LPT Q    V+ S  +L Q   +   +R+H+  S+++  L  HK +D   L  
Sbjct: 326 RPKVLIILPTRQACVRVMESITKLYQPEQQENKARFHETFSAADDKLWEHKPDDFRELFG 385

Query: 97  LPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSPP 130
              +      +      +K  S F   D+I++ P
Sbjct: 386 GNDDDMFRLGLKFTRKTIKYFSQFYNSDIILASP 419


>sp|A7J3A2|RDRP_ROTYO RNA-directed RNA polymerase OS=Rotavirus A (strain
           Human/Japan/YO/1977
           G3-P1A[8]-I1-R1-C1-M1-Ax-Nx-Tx-E1-Hx) PE=3 SV=1
          Length = 1088

 Score = 33.5 bits (75), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 29  PVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           P+  G    PG R R++  LP    I  +A +E+ L+    +R Y +  S SN+LL +
Sbjct: 446 PIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSY 503


>sp|B1NKR3|RDRP_ROTAD RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
           States/D/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) PE=3
           SV=1
          Length = 1088

 Score = 33.5 bits (75), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 29  PVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           P+  G    PG R R++  LP    I  +A +E+ L+    +R Y +  S SN+LL +
Sbjct: 446 PIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSY 503


>sp|A4ZCW8|RDRP_ROTHW RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
           States/Wa/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
           PE=3 SV=1
          Length = 1088

 Score = 33.5 bits (75), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 29  PVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           P+  G    PG R R++  LP    I  +A +E+ L+    +R Y +  S SN+LL +
Sbjct: 446 PIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSY 503


>sp|P17699|RDRP_ROTPG RNA-directed RNA polymerase OS=Rotavirus A (strain Pig/United
           States/Gottfried/1983
           G4-P2B[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1) PE=3 SV=1
          Length = 1088

 Score = 33.5 bits (75), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 29  PVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           P+  G    PG R R++  LP    I  +A +E+ L+    +R Y +  S SN+LL +
Sbjct: 446 PIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSY 503


>sp|B1NKU1|RDRP_ROTWI RNA-directed RNA polymerase OS=Rotavirus A (isolate Human/United
           States/WI61/1983 G9-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
           PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 29  PVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           P+  G    PG R R++  LP    I  +A +E+ L+    +R Y +  S SN+LL +
Sbjct: 446 PIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLSYAKHTREYAEFYSQSNQLLSY 503


>sp|C4XL11|SYT_DESMR Threonine--tRNA ligase OS=Desulfovibrio magneticus (strain ATCC
           700980 / DSM 13731 / RS-1) GN=thrS PE=3 SV=1
          Length = 647

 Score = 33.1 bits (74), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 54  IRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNF 101
           +RSY +L QR  ELG    H+ S   + LL+  + ++D AH++  P   
Sbjct: 345 VRSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQL 393


>sp|A4ZCW2|RDRP_ROTH3 RNA-directed RNA polymerase OS=Rotavirus A (strain
           Human/Japan/AU-1/1982
           G3-P3[9]-I3-R3-C3-M3-A3-N3-T3-E3-H3) PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|Q3ZK55|RDRP_ROT41 RNA-directed RNA polymerase OS=Rotavirus A (isolate
           Human/Belgium/B4106/2000
           G3-P11[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|P17468|RDRP_ROTRF RNA-directed RNA polymerase OS=Rotavirus A (strain
           Cow/France/RF/1975 G6-P6[1]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
           PE=1 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|B2BMF7|RDRP_ROTW3 RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
           States/WC3/1981 G6-P7[5]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
           PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|O37061|RDRP_ROTSP RNA-directed RNA polymerase OS=Rotavirus A (strain SA11-Patton
           G3-Px[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx) PE=1 SV=2
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|P22678|RDRP_ROTS1 RNA-directed RNA polymerase OS=Rotavirus A (strain SA11-Both
           G3-P5B[2]-I2-R2-C5-M5-A5-N2-T5-E2-H5) PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|A7J390|RDRP_ROTHS RNA-directed RNA polymerase OS=Rotavirus A (strain
           Human/Japan/S2/1980
           G2-P1B[4]-I2-R2-C2-M2-Ax-Nx-T2-E2-Hx) PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|A7J3A6|RDRP_ROTHD RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
           States/DS-1/1976 G2-P1B[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2)
           PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|A7J398|RDRP_ROTBN RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
           States/NCDV-Lincoln/1969
           G6-P6[1]-I2-R2-C2-M2-Ax-N2-T6-E2-Hx) PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|A2T3S0|RDRP_ROTSH RNA-directed RNA polymerase OS=Rotavirus A (isolate Monkey/South
           Africa/SA11-H96/1958
           G3-P5B[2]-I2-R2-C5-M5-A5-N5-T5-E2-H5) PE=1 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|A3DSK5|RDRP_ROTHL RNA-directed RNA polymerase OS=Rotavirus A (strain
           Human/Philippines/L26/1987
           G12-P1B[4]-I2-R2-C2-M1/M2-A2-N1-T2-E2-H1) PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|B1NKQ9|RDRP_ROTH7 RNA-directed RNA polymerase OS=Rotavirus A (isolate Human/United
           Kingdom/A64/1987 G10-P11[14]-I2-R2-C2-M1-A3-N2-T6-E2-H3)
           PE=3 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|B3F2X5|RDRP_ROTTU RNA-directed RNA polymerase OS=Rotavirus A (isolate Monkey/United
           States/TUCH/2003 G3-Px[24]-I9-R3-C3-M3-A9-Nx-Tx-Ex-Hx)
           PE=3 SV=1
          Length = 1088

 Score = 32.7 bits (73), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLLYAKHTREYAEFYSQSNQLLSY 503


>sp|B2BMQ6|RDRP_ROTH6 RNA-directed RNA polymerase OS=Rotavirus A (strain
           Human/Indonesia/69M/1980
           G8-P4[10]-I2-R2-C2-M2-A2-N2-T2-E2-H2) PE=3 SV=1
          Length = 1088

 Score = 32.7 bits (73), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 29  PVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 446 PIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSY 503


>sp|Q9QNB3|RDRP_ROTHK RNA-directed RNA polymerase OS=Rotavirus A (strain
           Human/Japan/KU/1995
           G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) PE=2 SV=1
          Length = 1088

 Score = 32.7 bits (73), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLLYAKHTREYAEFYSQSNQLLSY 503


>sp|B1NKS9|RDRP_ROTHP RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
           States/P/1974 G3-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) PE=3
           SV=1
          Length = 1088

 Score = 32.7 bits (73), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 29  PVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           P+  G    PG R R++  LP    I  +A +E+ L     +R Y +  S SN+LL +
Sbjct: 446 PIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLLYAKHTREYAEFYSQSNQLLSY 503


>sp|Q03RK3|SYT_LACBA Threonine--tRNA ligase OS=Lactobacillus brevis (strain ATCC 367 /
           JCM 1170) GN=thrS PE=3 SV=1
          Length = 647

 Score = 32.3 bits (72), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 51  NQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNFAN-FRSIH 108
           N  IRSY EL  R+ ELG    ++ S + + L +  + + +  H    P    + F+SI 
Sbjct: 344 NHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVAPEQIQDEFKSI- 402

Query: 109 MYDIVVKNRSFFEVRD 124
             D++VK  + F+++D
Sbjct: 403 -LDLMVKVYADFDIKD 417


>sp|Q8KAN0|SYT_CHLTE Threonine--tRNA ligase OS=Chlorobium tepidum (strain ATCC 49652 /
           DSM 12025 / TLS) GN=thrS PE=3 SV=1
          Length = 657

 Score = 32.3 bits (72), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 48  LPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNFAN--F 104
           L  +Q +RSY +L  RLTE G    H+ S   N L++    ++D +H+   P    +   
Sbjct: 356 LIYSQTLRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDEIC 415

Query: 105 RSIHMYDIVVKNRSFFEV 122
            +I +   V     F EV
Sbjct: 416 NAIDLTRFVFNTLGFDEV 433


>sp|B8DPN2|SYT_DESVM Threonine--tRNA ligase OS=Desulfovibrio vulgaris (strain Miyazaki F
           / DSM 19637) GN=thrS PE=3 SV=1
          Length = 644

 Score = 32.3 bits (72), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 54  IRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNF 101
           +RSY +L +R+ ELG    H+ S   + LL+  + ++D AH++  P   
Sbjct: 344 LRSYRDLPRRMFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQL 392


>sp|B8J4E4|SYT_DESDA Threonine--tRNA ligase OS=Desulfovibrio desulfuricans (strain ATCC
           27774 / DSM 6949) GN=thrS PE=3 SV=1
          Length = 647

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 54  IRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNFAN--FRSIHM 109
           + SY +L QR  ELG    H+ S   + LL+  + ++D AH+I  P          IH+
Sbjct: 347 LHSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICAPEQLEGEILEVIHL 405


>sp|P21615|RDRP_ROTBU RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
           Kingdom/UK/1975 G6-P7[5]-I2-R2-C2-M2-A3-N2-T7-E2-H3)
           PE=2 SV=1
          Length = 1088

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 28  EPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSR-YHDNSSSSNRLLQF 85
           +P+  G    PG R R++  LP    I  +A +E+ +     +R Y +  S SN+LL +
Sbjct: 445 KPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKSVIYAKHTREYAEFYSQSNQLLSY 503


>sp|Q9JJA2|COG8_MOUSE Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus
           GN=Cog8 PE=2 SV=3
          Length = 640

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 52  QVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDS---AHLISLPTNFANFR--- 105
           Q +R+  +L   L  +G+ R  D  + +   ++F ++ D+   + L ++P +   F    
Sbjct: 220 QQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITK 279

Query: 106 -----SIHMYDIVVKNRSFFEVRDLIMSPPTAE 133
                 +H++DI+ + R+ F   D ++ P   E
Sbjct: 280 TIEACRVHLFDIITQYRAIFSDEDPLLPPAMGE 312


>sp|Q8R9A4|SYT_THETN Threonine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
           DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=thrS PE=3
           SV=1
          Length = 644

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 38  PGARPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLIS 96
           PGA   +LV+  T   +RSY +L  RL ELG    H+ S   + L++    ++D AHL  
Sbjct: 343 PGA---MLVYKST---LRSYRDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAHLFM 396

Query: 97  LP 98
            P
Sbjct: 397 TP 398


>sp|B3EEC1|SYT_CHLL2 Threonine--tRNA ligase OS=Chlorobium limicola (strain DSM 245 /
           NBRC 103803) GN=thrS PE=3 SV=1
          Length = 657

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 54  IRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNFAN--FRSIHMY 110
           +RSY +L  RLTE G    H+ S   N L++    ++D +H+   P    +    +I + 
Sbjct: 362 LRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCTPEQLVDEICNAIDLT 421

Query: 111 DIVVKNRSFFEVR 123
             V     F EV+
Sbjct: 422 QFVFGTLGFSEVQ 434


>sp|Q96MW5|COG8_HUMAN Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens
           GN=COG8 PE=1 SV=2
          Length = 612

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 52  QVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDS---AHLISLPTNFANFR--- 105
           Q +R+  +L   L  +G+ R  D  + +   ++F ++ D+   + L ++P +   F    
Sbjct: 214 QQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITK 273

Query: 106 -----SIHMYDIVVKNRSFFEVRDLIMSPPTAEN 134
                 +H++DI+ + R+ F   D ++ P   E+
Sbjct: 274 TIEASRVHLFDIITQYRAIFSDEDPLLPPAMGEH 307


>sp|B9L5U7|SYT_NAUPA Threonine--tRNA ligase OS=Nautilia profundicola (strain ATCC
           BAA-1463 / DSM 18972 / AmH) GN=thrS PE=3 SV=1
          Length = 611

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 54  IRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLP 98
           +RSY EL  RL E G    H+ S   + LL+  + ++D AH+   P
Sbjct: 321 VRSYKELPLRLFEFGTVHRHEKSGVLHGLLRVREFTQDDAHIFCRP 366


>sp|Q2TBH9|COG8_BOVIN Conserved oligomeric Golgi complex subunit 8 OS=Bos taurus GN=COG8
           PE=2 SV=1
          Length = 626

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 52  QVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDS---AHLISLPTNFANFR--- 105
           Q +R+  +L   L  +G+ R  D  + +   ++F ++ D+   + L ++P +   F    
Sbjct: 220 QQLRTNIQLPACLRVIGFLRQMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITK 279

Query: 106 -----SIHMYDIVVKNRSFFEVRDLIMSPPTAEN 134
                 +H++DI+ + R+ F   D ++ P   E+
Sbjct: 280 TIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEH 313


>sp|B4SB93|SYT_PELPB Threonine--tRNA ligase OS=Pelodictyon phaeoclathratiforme (strain
           DSM 5477 / BU-1) GN=thrS PE=3 SV=1
          Length = 657

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 54  IRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHK-SEDSAHLISLPTNFAN--FRSIHMY 110
           +RSY +L  RLTE G    H+ S   N L++    ++D +H+   P    +    +I + 
Sbjct: 362 MRSYRDLPLRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDEICSAIELT 421

Query: 111 DIVVKNRSFFEVR 123
             V     F EV+
Sbjct: 422 QFVFGTLGFSEVQ 434


>sp|Q6N8F3|PQQE_RHOPA Coenzyme PQQ synthesis protein E OS=Rhodopseudomonas palustris
           (strain ATCC BAA-98 / CGA009) GN=pqqE PE=3 SV=1
          Length = 377

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 30  VQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSE 89
           ++  TAT   AR R+   L  + VI  Y     +    GW R   N S S ++L  H +E
Sbjct: 211 IEDCTATVEAARERLKGQLAIDYVIPDYYAARPKKCMGGWGRQFFNISPSGKVLPCHAAE 270


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,912,492
Number of Sequences: 539616
Number of extensions: 1942632
Number of successful extensions: 4951
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 4905
Number of HSP's gapped (non-prelim): 96
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)