Query 048445
Match_columns 138
No_of_seqs 57 out of 59
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 16:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whz_A Hypothetical protein; a 56.4 13 0.00044 23.4 3.5 18 55-72 5-22 (70)
2 3d6w_A Methyl-accepting/DNA re 55.1 40 0.0014 21.9 6.8 57 41-118 28-91 (111)
3 3vxv_A Methyl-CPG-binding doma 51.7 18 0.00061 24.0 3.8 28 41-68 25-52 (69)
4 2lqo_A Putative glutaredoxin R 51.5 9.7 0.00033 25.4 2.5 23 46-68 59-83 (92)
5 3c2i_A Methyl-CPG-binding prot 51.2 17 0.00057 26.0 3.8 28 41-68 43-70 (97)
6 1dfm_A Endonuclease bglii; res 43.6 34 0.0012 27.7 4.9 39 59-122 56-94 (223)
7 2ky8_A Methyl-CPG-binding doma 42.5 26 0.00089 23.3 3.5 26 41-66 32-57 (72)
8 4g4k_A Accessory gene regulato 39.1 29 0.00098 22.5 3.2 37 42-97 34-72 (103)
9 2rsm_A Probable peptide chain 38.9 34 0.0012 25.2 3.9 14 43-56 70-83 (115)
10 1jb7_B Telomere-binding protei 36.2 2 6.8E-05 35.3 -3.4 22 47-68 99-120 (260)
11 1d9n_A Methyl-CPG-binding prot 35.4 40 0.0014 22.7 3.6 25 41-65 30-54 (75)
12 3fpn_B Geobacillus stearotherm 34.6 44 0.0015 23.0 3.7 48 44-96 13-60 (106)
13 1ub1_A MECP2, attachment regio 30.7 43 0.0015 25.2 3.4 28 41-68 57-84 (133)
14 2i0q_B Telomere-binding protei 30.2 3 0.0001 35.8 -3.4 22 47-68 99-120 (385)
15 4de9_A Putative transcriptiona 29.1 27 0.00094 28.0 2.2 22 80-101 55-76 (286)
16 3a0s_A Sensor protein; PAS-fol 28.6 37 0.0013 18.0 2.1 16 2-17 3-18 (96)
17 2jo8_A Serine/threonine-protei 27.3 29 0.00098 22.5 1.6 13 56-68 11-23 (51)
18 3okz_A Putative uncharacterize 24.8 34 0.0011 27.9 2.0 22 80-101 45-66 (306)
19 2xxp_A CPS2A; replication, pep 24.6 36 0.0012 28.4 2.2 22 80-101 152-173 (398)
20 3ib6_A Uncharacterized protein 24.5 34 0.0012 23.6 1.7 31 44-74 51-81 (189)
21 3owq_A LIN1025 protein; struct 23.5 37 0.0013 27.8 2.0 23 79-101 93-115 (321)
22 3nxh_A Transcriptional regulat 22.5 36 0.0012 27.0 1.7 21 81-101 29-49 (269)
23 3qfi_A Transcriptional regulat 21.5 37 0.0013 27.7 1.6 24 78-101 43-66 (301)
24 3ldu_A Putative methylase; str 20.8 44 0.0015 27.1 1.9 32 42-74 60-91 (385)
25 3fc7_A HTR-like protein, senso 20.6 60 0.0021 18.9 2.1 16 3-19 31-46 (125)
26 1lvm_A Catalytic domain of the 20.4 55 0.0019 26.3 2.4 27 80-106 77-104 (229)
No 1
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=56.41 E-value=13 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.3
Q ss_pred ecHHHHHHHHHhhcceee
Q 048445 55 RSYAELEQRLTELGWSRY 72 (138)
Q Consensus 55 sSY~~LE~rL~~LGWeRY 72 (138)
-++.+|.+.|..+||+-.
T Consensus 5 ~~~~elik~L~~~G~~~~ 22 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVER 22 (70)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHCCCEEe
Confidence 368999999999999843
No 2
>3d6w_A Methyl-accepting/DNA response regulator; structural genomics, APC7590, lyttr DNA-binding domain, METH accepting/DNA response regulator, PSI-2; 2.40A {Bacillus cereus}
Probab=55.05 E-value=40 Score=21.85 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=35.1
Q ss_pred CCeEEEEccCcccee--cHHHHHHHHHhhcceeecCCCCCCcceeeeeecCCceeeeecccccccccee-----eeEeEE
Q 048445 41 RPRVLVFLPTNQVIR--SYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSI-----HMYDIV 113 (138)
Q Consensus 41 rrKvLVh~psnEVis--SY~~LE~rL~~LGWeRYy~d~~~~~~l~QFHkrd~svdLISLPrDF~kfksv-----HMYDIV 113 (138)
.+++.+|+..++... +...||++|.. ...+|-|++ .+|.+ .+.+.+ .-+.|.
T Consensus 28 ~~~~~i~t~~~~~~~~~tL~~le~~L~~-------------~~F~RihrS----~iVN~----~~I~~i~~~~~~~~~v~ 86 (111)
T 3d6w_A 28 DKKTYVNAEELTGTHKYSLQEFEYLLPK-------------DSFIRCHRS----FIVNV----NHIKAIYPDTHSTFLLS 86 (111)
T ss_dssp TTEEEEEESSCEEEESSCHHHHHHHSCT-------------TTEEEEETT----EEEEG----GGEEEEECCSSSCEEEE
T ss_pred CCEEEEEECCCEEEhhhhHHHHHhhCCc-------------CCEEEeehh----hEEeH----HHHhhecccCCCcEEEE
Confidence 469999998876543 56777777632 357778887 55543 233333 235677
Q ss_pred EecCC
Q 048445 114 VKNRS 118 (138)
Q Consensus 114 VKnrn 118 (138)
.+|..
T Consensus 87 l~~g~ 91 (111)
T 3d6w_A 87 MDNGE 91 (111)
T ss_dssp ETTSC
T ss_pred EcCCc
Confidence 77654
No 3
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=51.69 E-value=18 Score=23.97 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCeEEEEccCccceecHHHHHHHHHhhc
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLTELG 68 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~~LG 68 (138)
+.-|..+.|+|+-++|..+|.+-|.+.|
T Consensus 25 k~DvyY~sP~Gkk~RSk~ev~~yL~~~~ 52 (69)
T 3vxv_A 25 KFDVYFISPQGLKFRSKRSLANYLLKNG 52 (69)
T ss_dssp CEEEEEECTTSCEECSHHHHHHHHHHHC
T ss_pred cceEEEEcCCCCEeeCHHHHHHHHHhCC
Confidence 4578889999999999999999998865
No 4
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=51.46 E-value=9.7 Score=25.38 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEccCccceec--HHHHHHHHHhhc
Q 048445 46 VFLPTNQVIRS--YAELEQRLTELG 68 (138)
Q Consensus 46 Vh~psnEVisS--Y~~LE~rL~~LG 68 (138)
|+++.|++++. -++|+++|.+||
T Consensus 59 I~i~Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 59 VKFADGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp EEETTSCEEESCCHHHHHHHHHHHH
T ss_pred EEEeCCEEEeCCCHHHHHHHHHHhc
Confidence 45688999874 689999999986
No 5
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=51.24 E-value=17 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCeEEEEccCccceecHHHHHHHHHhhc
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLTELG 68 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~~LG 68 (138)
+--|..+.|+|+-++|..+|++-|.+-|
T Consensus 43 k~DvYY~sP~GkkfRSk~ev~ryL~~~g 70 (97)
T 3c2i_A 43 KYDVYLINPQGKAFRSKVELIMYFEKVG 70 (97)
T ss_dssp CEEEEEECTTSCEECSHHHHHHHHHHHT
T ss_pred cceEEEECCCCCEEECHHHHHHHHHHCC
Confidence 4578999999999999999999998765
No 6
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=43.60 E-value=34 Score=27.73 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=28.2
Q ss_pred HHHHHHHhhcceeecCCCCCCcceeeeeecCCceeeeeccccccccceeeeEeEEEecCCeeEE
Q 048445 59 ELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFEV 122 (138)
Q Consensus 59 ~LE~rL~~LGWeRYy~d~~~~~~l~QFHkrd~svdLISLPrDF~kfksvHMYDIVVKnrn~F~V 122 (138)
.|++.|.++||+.. |-+|..|... .|-.|.+ |||=.-||
T Consensus 56 ~ik~~f~~~GW~e~----------------------i~ip~~~~~~--~~~iDF~-K~rV~lEV 94 (223)
T 1dfm_A 56 YIKDELVPKHWKNN----------------------IPIPKRFDFL--GTDIDFG-KRDTLVEV 94 (223)
T ss_dssp HHHHHHGGGTCEEE----------------------EECCGGGGGG--CSEEEEE-ETTEEEEE
T ss_pred HHHHHHHHcCCccc----------------------cCCCcccCCc--cccceec-cccEEEEE
Confidence 78999999999832 5567666644 6777776 88766665
No 7
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=42.53 E-value=26 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCeEEEEccCccceecHHHHHHHHHh
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLTE 66 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~~ 66 (138)
+.-|..+.|+|+-++|..+|++-|.+
T Consensus 32 k~DvyY~sP~Gkr~RS~~ev~~YL~~ 57 (72)
T 2ky8_A 32 KSDVYYFSPSGKKFRSKPQLARYLGN 57 (72)
T ss_dssp CEEEEEECTTCCEEESHHHHHHHHTT
T ss_pred ceEEEEECCCCCEeEcHHHHHHHHhc
Confidence 45788899999999999999998866
No 8
>4g4k_A Accessory gene regulator protein A; AGRA, response regulator, activator, transcription factor, phosphoprotein, transcription regulation; 1.52A {Staphylococcus aureus} PDB: 3bs1_A
Probab=39.07 E-value=29 Score=22.51 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=23.4
Q ss_pred CeEEEEccCcccee--cHHHHHHHHHhhcceeecCCCCCCcceeeeeecCCceeeeec
Q 048445 42 PRVLVFLPTNQVIR--SYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISL 97 (138)
Q Consensus 42 rKvLVh~psnEVis--SY~~LE~rL~~LGWeRYy~d~~~~~~l~QFHkrd~svdLISL 97 (138)
+++.+|+.+|+... +...||++| |..+|-|++ .||.+
T Consensus 34 ~~~~i~t~~~~~~~~~~L~~le~~L---------------~~F~rihrS----~iVN~ 72 (103)
T 4g4k_A 34 HRLIAHLDNRQIEFYGNLKELSQLD---------------DRFFRCHNS----FVVNR 72 (103)
T ss_dssp SSEEEEESSCEEEECCCHHHHHTSC---------------TTEEEEETT----EEEEG
T ss_pred CEEEEEECCcEEEEccCHHHHhhhC---------------hhhEEEcce----EEEch
Confidence 68999999987543 344444432 226778887 45544
No 9
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=38.94 E-value=34 Score=25.19 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.7
Q ss_pred eEEEEccCccceec
Q 048445 43 RVLVFLPTNQVIRS 56 (138)
Q Consensus 43 KvLVh~psnEVisS 56 (138)
=.|.|+|||=||.+
T Consensus 70 Vrl~H~PTGivV~~ 83 (115)
T 2rsm_A 70 VVLKHVPSGIVVKC 83 (115)
T ss_dssp EEEECTTTCCEEEE
T ss_pred EEEecCCCCcEEEE
Confidence 45889999988875
No 10
>1jb7_B Telomere-binding protein beta subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 PDB: 1otc_B* 1ph6_B 1ph1_B 1ph3_B 1ph2_B 1pa6_B 1ph4_B 1ph5_B* 1ph7_B 1ph8_B 1ph9_B 1phj_B*
Probab=36.18 E-value=2 Score=35.32 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.6
Q ss_pred EccCccceecHHHHHHHHHhhc
Q 048445 47 FLPTNQVIRSYAELEQRLTELG 68 (138)
Q Consensus 47 h~psnEVisSY~~LE~rL~~LG 68 (138)
-+.|-||.|||+-||.||.-.-
T Consensus 99 rvnsaevftsyanlearlivhs 120 (260)
T 1jb7_B 99 RVNSAEVFTSYANLEARLIVHS 120 (260)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEE
T ss_pred ecchHHHhHhhhchhheeeeec
Confidence 4789999999999999986443
No 11
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=35.41 E-value=40 Score=22.66 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCeEEEEccCccceecHHHHHHHHH
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLT 65 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~ 65 (138)
+.-|..+.|+|+-++|..+|++-|.
T Consensus 30 k~DvyY~sP~Gkk~RS~~ev~ryL~ 54 (75)
T 1d9n_A 30 RSDTYYQSPTGDRIRSKVELTRYLG 54 (75)
T ss_dssp CCCEEEECSSSCEECSTHHHHHHHC
T ss_pred ceEEEEECCCCCeeecHHHHHHHhc
Confidence 5689999999999999999999985
No 12
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=34.65 E-value=44 Score=22.99 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=34.0
Q ss_pred EEEEccCccceecHHHHHHHHHhhcceeecCCCCCCcceeeeeecCCceeeee
Q 048445 44 VLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLIS 96 (138)
Q Consensus 44 vLVh~psnEVisSY~~LE~rL~~LGWeRYy~d~~~~~~l~QFHkrd~svdLIS 96 (138)
.-+.+-.|+.+ +.+.|.++|.++|.+|--.. ..-=||-.|.+.+|+..
T Consensus 13 ~~l~l~~G~~i-~~~~l~~~L~~~GY~r~~~v----~~~Gef~vRG~iiDIfp 60 (106)
T 3fpn_B 13 LVVSLRVGMEI-ERNALLRRLVDIQYDRNDID----FRRGTFRVRGDVVEIFP 60 (106)
T ss_dssp CCEEEETTCBC-CHHHHHHHHHHTTCEECTTC----CCTTEEEEETTEEEEEC
T ss_pred CCeEEECCCCc-CHHHHHHHHHHcCCEECCcc----CCcEEEEEECCEEEEec
Confidence 34556667765 68999999999999996332 22236877867788764
No 13
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=30.71 E-value=43 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.5
Q ss_pred CCeEEEEccCccceecHHHHHHHHHhhc
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLTELG 68 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~~LG 68 (138)
+--|..|.|+|+-++|..+|++-|.+.|
T Consensus 57 k~DVYY~SP~GKkfRSk~Ev~ryL~~~~ 84 (133)
T 1ub1_A 57 KYDVYLINPQGKAFRSKVELIAYFEKVG 84 (133)
T ss_dssp SEEEEEECTTSCEESSHHHHHHHHTTSC
T ss_pred ceeEEEECCCCCeeeCHHHHHHHHHHCC
Confidence 4578999999999999999999997654
No 14
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein complex, structural protein/DNA complex; 1.91A {Sterkiella nova} SCOP: b.40.4.3
Probab=30.24 E-value=3 Score=35.76 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.6
Q ss_pred EccCccceecHHHHHHHHHhhc
Q 048445 47 FLPTNQVIRSYAELEQRLTELG 68 (138)
Q Consensus 47 h~psnEVisSY~~LE~rL~~LG 68 (138)
-+.+-||.|||+-||.||.-.-
T Consensus 99 rvnsaevftsyanlearlivhs 120 (385)
T 2i0q_B 99 RVNSAEVFTSYANLEARLIVHS 120 (385)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEE
T ss_pred ecchHhHhhhhhchhheeeeec
Confidence 4789999999999999986433
No 15
>4de9_A Putative transcriptional regulator YWTF; possible role in WALL techoic acid synthesis, membrane prote; HET: VTP; 1.79A {Bacillus subtilis} PDB: 3mej_A*
Probab=29.08 E-value=27 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.683 Sum_probs=17.7
Q ss_pred cceeeeeecCCceeeeeccccc
Q 048445 80 NRLLQFHKSEDSAHLISLPTNF 101 (138)
Q Consensus 80 ~~l~QFHkrd~svdLISLPrDF 101 (138)
--|+.+......+.|||+|||-
T Consensus 55 iml~~in~~~~~~~lvSIPRDt 76 (286)
T 4de9_A 55 NVLVTFNRKEKTAKMLSIPRDA 76 (286)
T ss_dssp EEEEEEETTTTEEEEEECCTTB
T ss_pred EEEEEEcCCCCEEEEEEecCCC
Confidence 3477787776899999999983
No 16
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=28.56 E-value=37 Score=18.03 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=13.1
Q ss_pred cceEEEeeCCEEEEee
Q 048445 2 SGVWVFDKNGVARLIQ 17 (138)
Q Consensus 2 SGVWVF~knGV~rLve 17 (138)
.|+|++|.+|.+..+.
T Consensus 3 ~~i~~~d~~g~i~~~N 18 (96)
T 3a0s_A 3 TAIITLSKDGRITEWN 18 (96)
T ss_dssp CEEEEEETTSBEEEEC
T ss_pred ceEEEEcCCCCEeehh
Confidence 3899999999887753
No 17
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.33 E-value=29 Score=22.52 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.1
Q ss_pred cHHHHHHHHHhhc
Q 048445 56 SYAELEQRLTELG 68 (138)
Q Consensus 56 SY~~LE~rL~~LG 68 (138)
||++|+++|.+|-
T Consensus 11 s~eEL~~rl~~Ld 23 (51)
T 2jo8_A 11 TVEDLQKRLLALD 23 (51)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcc
Confidence 8999999998763
No 18
>3okz_A Putative uncharacterized protein GBS0355; structural genomics, PSI-biology; 2.70A {Streptococcus agalactiae}
Probab=24.82 E-value=34 Score=27.92 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=17.6
Q ss_pred cceeeeeecCCceeeeeccccc
Q 048445 80 NRLLQFHKSEDSAHLISLPTNF 101 (138)
Q Consensus 80 ~~l~QFHkrd~svdLISLPrDF 101 (138)
--|+.+......+.|||+|||-
T Consensus 45 iml~~in~~~~~~~lvSIPRDt 66 (306)
T 3okz_A 45 MILVTINPKTNKTTMTSLERDV 66 (306)
T ss_dssp EEEEEEETTTTEEEEEEECTTB
T ss_pred EEEEEEcCCCCEEEEEEecCCc
Confidence 3477777766889999999984
No 19
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=24.56 E-value=36 Score=28.37 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.5
Q ss_pred cceeeeeecCCceeeeeccccc
Q 048445 80 NRLLQFHKSEDSAHLISLPTNF 101 (138)
Q Consensus 80 ~~l~QFHkrd~svdLISLPrDF 101 (138)
--|+.+......+.|+|+|||-
T Consensus 152 iml~~i~~~~~~~~lvSIPRDt 173 (398)
T 2xxp_A 152 NILMTVNRDTKKILLTTTPRDA 173 (398)
T ss_dssp EEEEEEETTTTEEEEEECCTTB
T ss_pred EEEEEEcCCCCeEEEEEECCcc
Confidence 3467777766899999999984
No 20
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=24.53 E-value=34 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=23.7
Q ss_pred EEEEccCccceecHHHHHHHHHhhcceeecC
Q 048445 44 VLVFLPTNQVIRSYAELEQRLTELGWSRYHD 74 (138)
Q Consensus 44 vLVh~psnEVisSY~~LE~rL~~LGWeRYy~ 74 (138)
+-+.+-||.--+..+.+++.|..+|+..||+
T Consensus 51 ~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd 81 (189)
T 3ib6_A 51 FKQAILSNTATSDTEVIKRVLTNFGIIDYFD 81 (189)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHHTTCGGGEE
T ss_pred CEEEEEECCCccchHHHHHHHHhcCchhheE
Confidence 4555566665555688999999999998886
No 21
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, unknown FUN; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=23.46 E-value=37 Score=27.82 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=18.2
Q ss_pred CcceeeeeecCCceeeeeccccc
Q 048445 79 SNRLLQFHKSEDSAHLISLPTNF 101 (138)
Q Consensus 79 ~~~l~QFHkrd~svdLISLPrDF 101 (138)
.--|+.+......+.+||+|||-
T Consensus 93 timl~~in~~~~~~~lvSIPRDt 115 (321)
T 3owq_A 93 TIILATANKQQNAVEMVSIPRDT 115 (321)
T ss_dssp EEEEEEEETTTTEEEEEECCTTB
T ss_pred EEEEEEEeCCCCEEEEEEecCCc
Confidence 34577777776899999999984
No 22
>3nxh_A Transcriptional regulator YVHJ; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; 2.58A {Bacillus subtilis subsp}
Probab=22.50 E-value=36 Score=26.97 Aligned_cols=21 Identities=10% Similarity=0.381 Sum_probs=16.2
Q ss_pred ceeeeeecCCceeeeeccccc
Q 048445 81 RLLQFHKSEDSAHLISLPTNF 101 (138)
Q Consensus 81 ~l~QFHkrd~svdLISLPrDF 101 (138)
-|+.+......+.|||+|||-
T Consensus 29 ml~~i~~~~~~~~lvSIPRDt 49 (269)
T 3nxh_A 29 IVVTLDPKNKTMKMLSIPRDT 49 (269)
T ss_dssp EEEEEEGGGTEEEEEEECTTB
T ss_pred EEEEEcCCCCEEEEEEecCCc
Confidence 466666665789999999983
No 23
>3qfi_A Transcriptional regulator; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.71A {Enterococcus faecalis}
Probab=21.49 E-value=37 Score=27.75 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=18.8
Q ss_pred CCcceeeeeecCCceeeeeccccc
Q 048445 78 SSNRLLQFHKSEDSAHLISLPTNF 101 (138)
Q Consensus 78 ~~~~l~QFHkrd~svdLISLPrDF 101 (138)
|.--|+.+......+.|||+|||-
T Consensus 43 Dtiml~~in~~~~~i~lvSIPRDt 66 (301)
T 3qfi_A 43 DTTMVVTINPKENKSTMISLDRDI 66 (301)
T ss_dssp CEEEEEEEEGGGTEEEEEEECTTB
T ss_pred cEEEEEEEcCCCCEEEEEEecCCc
Confidence 334577787766899999999984
No 24
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=20.78 E-value=44 Score=27.08 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=27.2
Q ss_pred CeEEEEccCccceecHHHHHHHHHhhcceeecC
Q 048445 42 PRVLVFLPTNQVIRSYAELEQRLTELGWSRYHD 74 (138)
Q Consensus 42 rKvLVh~psnEVisSY~~LE~rL~~LGWeRYy~ 74 (138)
-+||+-+.+.. ..+++.|.+...++-|+.|+.
T Consensus 60 ~RVl~~l~~f~-~~~~~~L~~~~~~i~w~~~~~ 91 (385)
T 3ldu_A 60 ERVHLKIAEFE-AKSFDELFENTKRINWSRYIP 91 (385)
T ss_dssp SCCEEEEEEEE-CSSHHHHHHHHHTSCGGGTSC
T ss_pred eEEEEEeeeEe-cCCHHHHHHHHHhCCHHHhCC
Confidence 37888777655 579999999999999999986
No 25
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=20.58 E-value=60 Score=18.85 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.1
Q ss_pred ceEEEeeCCEEEEeeCC
Q 048445 3 GVWVFDKNGVARLIQNP 19 (138)
Q Consensus 3 GVWVF~knGV~rLvenp 19 (138)
|+|++|.+|.+..+ ||
T Consensus 31 ~i~~~d~~g~i~~~-N~ 46 (125)
T 3fc7_A 31 GIVHLTTNGTILSV-NP 46 (125)
T ss_dssp EEEEEETTSBEEEE-CH
T ss_pred eEEEEcCCCeEEEE-CH
Confidence 89999999988765 44
No 26
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=20.36 E-value=55 Score=26.32 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=19.2
Q ss_pred cceeeeee-cCCceeeeeccccccccce
Q 048445 80 NRLLQFHK-SEDSAHLISLPTNFANFRS 106 (138)
Q Consensus 80 ~~l~QFHk-rd~svdLISLPrDF~kfks 106 (138)
-.-+|.|+ .+-.+-+|-||+||--|+.
T Consensus 77 t~~lki~~i~g~DiiiIrmPkDfpPf~~ 104 (229)
T 1lvm_A 77 TTTLQQHLIDGRDMIIIRMPKDFPPFPQ 104 (229)
T ss_dssp GGGSEEEECTTSSCEEEECCTTSCCCCS
T ss_pred CCceeeEEeCCccEEEEeCCCcCCCccc
Confidence 45566666 3346778999999987654
Done!