Query 048445
Match_columns 138
No_of_seqs 57 out of 59
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 16:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1edqa3 d.26.3.1 (A:444-516) C 52.0 3 0.00022 25.3 1.5 23 54-76 33-55 (73)
2 d1vf8a2 d.26.3.1 (A:246-315) C 47.4 6.5 0.00047 23.8 2.6 22 54-76 34-55 (70)
3 d1o70a2 b.118.1.1 (A:468-624) 45.8 4.1 0.0003 26.5 1.6 24 106-130 129-152 (157)
4 d2a5yb1 a.4.5.80 (B:386-543) C 45.6 0.85 6.2E-05 33.4 -2.1 52 57-108 92-151 (158)
5 d1itxa2 d.26.3.1 (A:338-409) C 42.8 5.7 0.00042 23.9 1.8 23 54-76 32-55 (72)
6 d1goia3 d.26.3.1 (A:292-379) C 42.7 8.5 0.00062 24.4 2.8 29 54-82 48-77 (88)
7 d1qk9a_ d.10.1.3 (A:) Methyl-C 42.4 14 0.001 24.0 4.0 28 41-68 43-70 (92)
8 d1v5xa_ c.1.2.4 (A:) N-(5'phos 42.0 6.3 0.00046 27.5 2.2 52 42-109 54-105 (200)
9 d1jb7b_ b.40.4.3 (B:) Core dom 36.1 0.92 6.7E-05 34.6 -3.4 23 47-69 91-113 (216)
10 d2go7a1 c.108.1.6 (A:3-206) Hy 35.4 5.7 0.00042 25.6 1.0 28 43-74 98-125 (204)
11 d1ig4a_ d.10.1.3 (A:) Methylat 35.3 22 0.0016 22.4 3.9 25 41-65 30-54 (75)
12 d1x42a1 c.108.1.1 (A:1-230) Hy 33.0 11 0.00079 24.7 2.1 29 43-74 115-143 (230)
13 d1m7ja1 b.92.1.6 (A:7-61) N-ac 31.9 5.9 0.00043 22.7 0.5 11 110-120 2-12 (55)
14 d1ccwa_ c.23.6.1 (A:) Glutamat 26.5 29 0.0021 23.0 3.5 35 40-74 2-37 (137)
15 d1tdja2 d.58.18.2 (A:336-423) 26.2 12 0.00087 24.1 1.3 45 41-88 41-85 (88)
16 d2as0a1 b.122.1.9 (A:1-72) Hyp 25.2 45 0.0033 19.6 3.9 32 3-54 18-49 (72)
17 d2hcfa1 c.108.1.6 (A:2-229) Hy 24.0 28 0.002 22.5 2.9 29 43-74 108-136 (228)
18 d2a2pa1 c.47.1.23 (A:25-144) S 23.8 46 0.0033 22.9 4.2 33 40-72 54-93 (120)
19 d2p8ta2 d.74.4.2 (A:83-199) Hy 22.2 14 0.001 25.9 1.1 14 108-121 14-27 (117)
20 d1o6wa2 b.72.1.1 (A:30-75) Spl 22.0 44 0.0032 19.4 3.2 27 59-88 6-32 (46)
21 d2g9na1 c.37.1.19 (A:21-238) I 21.4 17 0.0012 25.3 1.4 24 50-73 7-36 (218)
22 d1wiba_ d.47.1.1 (A:) 60S ribo 20.0 27 0.0019 23.0 2.1 70 41-133 16-85 (92)
No 1
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens [TaxId: 615]}
Probab=51.97 E-value=3 Score=25.26 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.6
Q ss_pred eecHHHHHHHHHhhcceeecCCC
Q 048445 54 IRSYAELEQRLTELGWSRYHDNS 76 (138)
Q Consensus 54 isSY~~LE~rL~~LGWeRYy~d~ 76 (138)
|-+|.+|.+.+..-||++++++.
T Consensus 33 ~~~Y~~l~~~~~~~g~~~~wD~~ 55 (73)
T d1edqa3 33 IVDYRQIAGQFMSGEWQYTYDAT 55 (73)
T ss_dssp EEEHHHHHHHSSSTTCEEEEETT
T ss_pred hhHHHHHHHHhccCCeeEEEecc
Confidence 67899999999999999999873
No 2
>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.43 E-value=6.5 Score=23.78 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.0
Q ss_pred eecHHHHHHHHHhhcceeecCCC
Q 048445 54 IRSYAELEQRLTELGWSRYHDNS 76 (138)
Q Consensus 54 isSY~~LE~rL~~LGWeRYy~d~ 76 (138)
+-+|.++.++|.+ ||.|.|++.
T Consensus 34 ~l~y~EIc~~~~~-~~~~~~D~~ 55 (70)
T d1vf8a2 34 LLAYYEVCTFLNE-GATEVWDAP 55 (70)
T ss_dssp EEEHHHHHHHHHT-TCEEEEETT
T ss_pred eEeHHHHHHHHhC-CCeEEEeCC
Confidence 4578888887875 999998863
No 3
>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=45.80 E-value=4.1 Score=26.48 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.4
Q ss_pred eeeeEeEEEecCCeeEEEEeeeCCC
Q 048445 106 SIHMYDIVVKNRSFFEVRDLIMSPP 130 (138)
Q Consensus 106 svHMYDIVVKnrn~F~VRD~~~~~~ 130 (138)
.|-.-||...|- +-||.|-++-||
T Consensus 129 ~V~~~Di~a~NG-viHvID~VLlp~ 152 (157)
T d1o70a2 129 NVYRPDVECTNG-IIHVIDYPLLEE 152 (157)
T ss_dssp EEEEEEEEETTE-EEEEESSCSCCT
T ss_pred eEEECCEecCCe-EEEEECceecCC
Confidence 355678888888 788899877665
No 4
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=45.62 E-value=0.85 Score=33.44 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcceeecCCCCCCcceeeeeecCCcee--------eeeccccccccceee
Q 048445 57 YAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAH--------LISLPTNFANFRSIH 108 (138)
Q Consensus 57 Y~~LE~rL~~LGWeRYy~d~~~~~~l~QFHkrd~svd--------LISLPrDF~kfksvH 108 (138)
.+.|||||.++|=.----.+.--|.-+|--+|.+..+ -.--|.||+||-.+|
T Consensus 92 isileqrl~e~gnnn~~~perh~pshfqkfrr~sa~~m~pkt~e~~virped~~kfmq~h 151 (158)
T d2a5yb1 92 ISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKTTEETVIRPEDFPKFMQLH 151 (158)
T ss_dssp HTTSTTTSSCC---------------------------------CCSCCCTTSTTCSCTT
T ss_pred HHHHHHHHHHhccCCCCCcccccchHHHHhhccchhhcCCcccccceeChhhhHHHHHHH
Confidence 4679999999995422111111133333223312222 233488999998877
No 5
>d1itxa2 d.26.3.1 (A:338-409) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
Probab=42.76 E-value=5.7 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=17.4
Q ss_pred eecHHHHHHHH-HhhcceeecCCC
Q 048445 54 IRSYAELEQRL-TELGWSRYHDNS 76 (138)
Q Consensus 54 isSY~~LE~rL-~~LGWeRYy~d~ 76 (138)
|.+|-+|...| ..-||+|||++.
T Consensus 32 ~~~Y~ei~~~~~~~~g~~~~~D~~ 55 (72)
T d1itxa2 32 SFDFYDLEANYINKNGYTRYWNDT 55 (72)
T ss_dssp EEEHHHHHHHTTTCTTEEEEEETT
T ss_pred cChHHHHHHHhccCCCCEEEEcCC
Confidence 66787776654 567999999873
No 6
>d1goia3 d.26.3.1 (A:292-379) Chitinase B {Serratia marcescens [TaxId: 615]}
Probab=42.70 E-value=8.5 Score=24.36 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=20.5
Q ss_pred eecHHHHHHH-HHhhcceeecCCCCCCcce
Q 048445 54 IRSYAELEQR-LTELGWSRYHDNSSSSNRL 82 (138)
Q Consensus 54 isSY~~LE~r-L~~LGWeRYy~d~~~~~~l 82 (138)
|-.|-.|..- +..-||+|||++....|-|
T Consensus 48 ~~~y~~l~~~~~~~~Gy~~~~D~~AkApyl 77 (88)
T d1goia3 48 IASYRQLEQMLQGNYGYQRLWNDKTKTPYL 77 (88)
T ss_dssp EEEHHHHHHHHHTTSSEEEEEETTTTEEEE
T ss_pred cccHHHHHHhhccCCCcEEEeCcCcccceE
Confidence 6678888664 5568999999974444444
No 7
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.41 E-value=14 Score=24.03 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCeEEEEccCccceecHHHHHHHHHhhc
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLTELG 68 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~~LG 68 (138)
..-|..+.|+|.-++|+.++++-|.+.|
T Consensus 43 k~Dvyy~sP~Gkk~RS~~eV~~yL~~~~ 70 (92)
T d1qk9a_ 43 KYDVYLINPQGKAFRSKVELIAYFEKVG 70 (92)
T ss_dssp CCCEEEEETTTEEESSHHHHHHHHHHHT
T ss_pred eeeEEEECCCCCeeecHHHHHHHHHHCC
Confidence 4579999999999999999999998865
No 8
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}
Probab=42.01 E-value=6.3 Score=27.45 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=32.6
Q ss_pred CeEEEEccCccceecHHHHHHHHHhhcceeecCCCCCCcceeeeeecCCceeeeeccccccccceeee
Q 048445 42 PRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHM 109 (138)
Q Consensus 42 rKvLVh~psnEVisSY~~LE~rL~~LGWeRYy~d~~~~~~l~QFHkrd~svdLISLPrDF~kfksvHM 109 (138)
.+|+|++... .+.++..+..+| .+.+|+|-..+--.+-.|.+.|..++.++.
T Consensus 54 ~~V~Vf~~~~-----~~~i~~~~~~~~-----------~d~vQlHg~e~~~~~~~l~~~~~iik~~~~ 105 (200)
T d1v5xa_ 54 VRVGVFRDQP-----PEEVLRLMEEAR-----------LQVAQLHGEEPPEWAEAVGRFYPVIKAFPL 105 (200)
T ss_dssp EEEEEESSCC-----HHHHHHHHHHTT-----------CSEEEECSCCCHHHHHHHTTTSCEEEEEEC
T ss_pred eeeeeeeech-----hhhhhhhhcccc-----------cccccccccCCHHHHHHHhhccccceeecc
Confidence 5788887654 477777777765 789999987432233344555544444433
No 9
>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein beta subunit {Oxytricha nova [TaxId: 200597]}
Probab=36.11 E-value=0.92 Score=34.62 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=19.0
Q ss_pred EccCccceecHHHHHHHHHhhcc
Q 048445 47 FLPTNQVIRSYAELEQRLTELGW 69 (138)
Q Consensus 47 h~psnEVisSY~~LE~rL~~LGW 69 (138)
-+.|-||.|||+-||.||.-..+
T Consensus 91 rvnsaevftsyanlearlivhsf 113 (216)
T d1jb7b_ 91 RVNSAEVFTSYANLEARLIVHSF 113 (216)
T ss_dssp ECCTTTCSSCBTTEEEEEEEEEE
T ss_pred ecchHHHhHhhhchhheeeeecc
Confidence 47899999999999999864433
No 10
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=35.44 E-value=5.7 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=19.5
Q ss_pred eEEEEccCccceecHHHHHHHHHhhcceeecC
Q 048445 43 RVLVFLPTNQVIRSYAELEQRLTELGWSRYHD 74 (138)
Q Consensus 43 KvLVh~psnEVisSY~~LE~rL~~LGWeRYy~ 74 (138)
.+.+.+-||- . ...+++|..+||.+||+
T Consensus 98 g~~~~v~Sn~---~-~~~~~~l~~~gl~~~f~ 125 (204)
T d2go7a1 98 GIQQFIYTHK---G-NNAFTILKDLGVESYFT 125 (204)
T ss_dssp TCEEEEECSS---C-THHHHHHHHHTCGGGEE
T ss_pred ccchhhhccc---c-hhhhhhhhhcccccccc
Confidence 3555666663 1 23567899999999987
No 11
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.33 E-value=22 Score=22.38 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.4
Q ss_pred CCeEEEEccCccceecHHHHHHHHH
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLT 65 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~ 65 (138)
+.-|..+.|+|+-++|..+|++-|.
T Consensus 30 k~DvyY~sP~Gkk~RS~~ev~~yL~ 54 (75)
T d1ig4a_ 30 RSDTYYQSPTGDRIRSKVELTRYLG 54 (75)
T ss_dssp CCEEEEECSSSCEECSHHHHHHHHC
T ss_pred ceeEEEECCCCCEEeCHHHHHHHhc
Confidence 4579999999999999999999883
No 12
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.05 E-value=11 Score=24.72 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=23.5
Q ss_pred eEEEEccCccceecHHHHHHHHHhhcceeecC
Q 048445 43 RVLVFLPTNQVIRSYAELEQRLTELGWSRYHD 74 (138)
Q Consensus 43 KvLVh~psnEVisSY~~LE~rL~~LGWeRYy~ 74 (138)
++-+++-|| ++.+.++.+|..+|+..||+
T Consensus 115 ~~~i~i~Sn---~~~~~~~~~l~~~gl~~~fd 143 (230)
T d1x42a1 115 KYHVGMITD---SDTEYLMAHLDALGIKDLFD 143 (230)
T ss_dssp TBEEEEEES---SCHHHHHHHHHHHTCGGGCS
T ss_pred cCceeeeec---cccccchhhhcccccccccc
Confidence 455666666 47888999999999999987
No 13
>d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=31.89 E-value=5.9 Score=22.70 Aligned_cols=11 Identities=9% Similarity=0.489 Sum_probs=8.8
Q ss_pred EeEEEecCCee
Q 048445 110 YDIVVKNRSFF 120 (138)
Q Consensus 110 YDIVVKnrn~F 120 (138)
||+++||-..|
T Consensus 2 ~DllIkn~~i~ 12 (55)
T d1m7ja1 2 FDYILSGGTVI 12 (55)
T ss_dssp BSEEEESSEEC
T ss_pred CcEEEECCEEE
Confidence 89999987655
No 14
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=26.46 E-value=29 Score=22.95 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=27.4
Q ss_pred CCCeEEEEccCccce-ecHHHHHHHHHhhcceeecC
Q 048445 40 ARPRVLVFLPTNQVI-RSYAELEQRLTELGWSRYHD 74 (138)
Q Consensus 40 ~rrKvLVh~psnEVi-sSY~~LE~rL~~LGWeRYy~ 74 (138)
+|+|||+-++.|+.= ---..++..|+..||+=+|-
T Consensus 2 ~k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~L 37 (137)
T d1ccwa_ 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNI 37 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEec
Confidence 368999999988742 23557899999999997763
No 15
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.21 E-value=12 Score=24.06 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCeEEEEccCccceecHHHHHHHHHhhcceeecCCCCCCcceeeeeec
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKS 88 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~~LGWeRYy~d~~~~~~l~QFHkr 88 (138)
.-+|||-+-...-....+.|.+.|.++|.+ |.+- +...+.+.|-|
T Consensus 41 ~a~VlvGi~~~~~~~e~~~l~~~L~~~Gy~-~~Dl--tdne~aK~HlR 85 (88)
T d1tdja2 41 NACIFVGVRLSRGLEERKEILQMLNDGGYS-VVDL--SDDEMAKLHVR 85 (88)
T ss_dssp BCEEEEEEECSSTHHHHHHHHHHHTSSSCE-EETT--SSCHHHHHTGG
T ss_pred CeEEEEEEEecCcchhHHHHHHHHHHCCCc-eEEC--cCCHHHHHHHH
Confidence 348999876654445788999999999987 5441 12677777766
No 16
>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.20 E-value=45 Score=19.55 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=22.2
Q ss_pred ceEEEeeCCEEEEeeCCCcccccccCCCCCCCCCCCCCCCeEEEEccCccce
Q 048445 3 GVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVI 54 (138)
Q Consensus 3 GVWVF~knGV~rLvenp~~~s~~~~~~~~~g~~~~~~~rrKvLVh~psnEVi 54 (138)
+-|+| .+||.++..++. +| -=|.|+-+.|+.|
T Consensus 18 ~pwi~-~~~i~~~~g~~~-----------~G--------d~V~v~d~~g~~l 49 (72)
T d2as0a1 18 AMIVF-KKGVVRVEGDIK-----------PG--------DIVEVYTRGGKFL 49 (72)
T ss_dssp CCEEE-GGGEEEEESCCC-----------TT--------CEEEEEETTCCEE
T ss_pred CCeEC-HhhcccccCCcC-----------CC--------cEEEEEeCCCcEE
Confidence 58999 999988765432 11 2678888888743
No 17
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}
Probab=24.02 E-value=28 Score=22.48 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=22.3
Q ss_pred eEEEEccCccceecHHHHHHHHHhhcceeecC
Q 048445 43 RVLVFLPTNQVIRSYAELEQRLTELGWSRYHD 74 (138)
Q Consensus 43 KvLVh~psnEVisSY~~LE~rL~~LGWeRYy~ 74 (138)
++-+.+-||. +...++..|..+||..||+
T Consensus 108 ~~~~~v~t~~---~~~~~~~~l~~~gl~~~fd 136 (228)
T d2hcfa1 108 DVLLGLLTGN---FEASGRHKLKLPGIDHYFP 136 (228)
T ss_dssp TEEEEEECSS---CHHHHHHHHHTTTCSTTCS
T ss_pred cccccccCCC---cchhhhhhhhhhccccccc
Confidence 4555555554 5678999999999999987
No 18
>d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.78 E-value=46 Score=22.89 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCCeEEEEccCcccee-------cHHHHHHHHHhhcceee
Q 048445 40 ARPRVLVFLPTNQVIR-------SYAELEQRLTELGWSRY 72 (138)
Q Consensus 40 ~rrKvLVh~psnEVis-------SY~~LE~rL~~LGWeRY 72 (138)
.++++.+|-..||++- +.+.+++-|.++|.-|=
T Consensus 54 a~P~LvL~D~~ge~vE~i~Iekw~~deI~~~L~EkGF~kr 93 (120)
T d2a2pa1 54 ADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFYRK 93 (120)
T ss_dssp CCCEEEEECSSSCCCEEEECSSSCHHHHHHHHHHHTCCBC
T ss_pred CCCEEEEecCCCCEEEEEecccCCHHHHHHHHHHcCceec
Confidence 5789999999999864 78999999999997554
No 19
>d2p8ta2 d.74.4.2 (A:83-199) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.22 E-value=14 Score=25.94 Aligned_cols=14 Identities=43% Similarity=0.382 Sum_probs=11.8
Q ss_pred eeEeEEEecCCeeE
Q 048445 108 HMYDIVVKNRSFFE 121 (138)
Q Consensus 108 HMYDIVVKnrn~F~ 121 (138)
-.|-|||||+-.|+
T Consensus 14 p~~a~vVK~pp~fk 27 (117)
T d2p8ta2 14 PGIAIVVKNPPEFK 27 (117)
T ss_dssp EEEEEEESSCCCCC
T ss_pred CceeEEeeCCcccc
Confidence 46899999998775
No 20
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.01 E-value=44 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=20.7
Q ss_pred HHHHHHHhhcceeecCCCCCCcceeeeeec
Q 048445 59 ELEQRLTELGWSRYHDNSSSSNRLLQFHKS 88 (138)
Q Consensus 59 ~LE~rL~~LGWeRYy~d~~~~~~l~QFHkr 88 (138)
..|+.|.+-||.-+..+. -..+.||..
T Consensus 6 ~~E~~l~~~~W~e~~~~~---Gr~YYyN~~ 32 (46)
T d1o6wa2 6 QEELLLRENGWKAAKTAD---GKVYYYNPT 32 (46)
T ss_dssp HHHHHHHHHTCEEEECTT---CCEEEEETT
T ss_pred HHHHHhccCCCeEEECCC---CCEEEEECC
Confidence 568999999999998641 566777665
No 21
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.41 E-value=17 Score=25.27 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=18.9
Q ss_pred CccceecHH------HHHHHHHhhcceeec
Q 048445 50 TNQVIRSYA------ELEQRLTELGWSRYH 73 (138)
Q Consensus 50 snEVisSY~------~LE~rL~~LGWeRYy 73 (138)
-+|.|+|++ .|-+.|.++||++=+
T Consensus 7 ~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt 36 (218)
T d2g9na1 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPS 36 (218)
T ss_dssp CCCCCCCGGGSCCCHHHHHHHHHHTCCSCC
T ss_pred CCCccCCHHHCCCCHHHHHHHHHCCCCCCC
Confidence 357888887 577888999998754
No 22
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.02 E-value=27 Score=23.02 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=38.1
Q ss_pred CCeEEEEccCccceecHHHHHHHHHhhcceeecCCCCCCcceeeeeecCCceeeeeccccccccceeeeEeEEEecCCee
Q 048445 41 RPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120 (138)
Q Consensus 41 rrKvLVh~psnEVisSY~~LE~rL~~LGWeRYy~d~~~~~~l~QFHkrd~svdLISLPrDF~kfksvHMYDIVVKnrn~F 120 (138)
-+-+-+-++.|++--+. .|=.+|..+|-.=- .-.-+|.++ -++|.-+ .=+-.|.|+||+ |
T Consensus 16 v~~Ikl~v~gG~A~p~P-plgP~LGp~Gini~-------~f~k~fN~~---------T~~~kG~--~VpV~itV~dRs-f 75 (92)
T d1wiba_ 16 VKVVYLRCTGGEVGATS-ALAPKIGPLGLSPK-------KVGDDIAKA---------TGDWKGL--RITVKLTIQNRQ-A 75 (92)
T ss_dssp CEEEEEEEETTCCCCSS-CSHHHHTTTCSCHH-------HHHHHHHHH---------TTTTTTS--EEEEEEEEETTE-E
T ss_pred eEEEEEEEecCccCCCC-CccccccccCCCHH-------HHHHHHHHh---------hhhccCC--eEeEEEEEeCce-E
Confidence 34577788888864432 35567777664200 001124433 2455322 234458889987 5
Q ss_pred EEEEeeeCCCCCC
Q 048445 121 EVRDLIMSPPTAE 133 (138)
Q Consensus 121 ~VRD~~~~~~~~~ 133 (138)
++. | .||++.
T Consensus 76 ~i~--V-~PpaS~ 85 (92)
T d1wiba_ 76 QIE--V-VPSASA 85 (92)
T ss_dssp ECC--B-CSCCCC
T ss_pred EEE--E-cCCHHH
Confidence 554 4 688764
Done!