Query 048448
Match_columns 308
No_of_seqs 204 out of 2499
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.9E-33 1E-37 258.3 15.3 274 35-308 23-479 (491)
2 3o7q_A L-fucose-proton symport 99.8 6.4E-19 2.2E-23 159.8 13.5 117 35-151 37-176 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 3.8E-20 1.3E-24 168.3 3.6 135 36-171 40-214 (451)
4 2gfp_A EMRD, multidrug resista 99.7 6.5E-18 2.2E-22 150.2 5.9 133 38-170 14-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.7 4.7E-16 1.6E-20 143.1 13.0 116 44-159 34-181 (491)
6 2xut_A Proton/peptide symporte 99.5 5.3E-13 1.8E-17 123.8 13.8 116 44-159 33-183 (524)
7 2cfq_A Lactose permease; trans 99.2 6.9E-13 2.4E-17 119.7 -1.5 112 48-159 32-172 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.6 1E-07 3.5E-12 86.0 10.0 112 48-159 277-418 (451)
9 4gc0_A D-xylose-proton symport 98.6 1.1E-07 3.7E-12 87.1 9.5 100 47-147 300-425 (491)
10 3o7q_A L-fucose-proton symport 98.4 1.8E-07 6.2E-12 84.1 4.9 111 47-159 282-417 (438)
11 2cfq_A Lactose permease; trans 98.4 2.9E-07 9.9E-12 82.7 5.0 102 58-159 258-384 (417)
12 4aps_A DI-OR tripeptide H+ sym 98.2 1.5E-06 5E-11 79.5 7.0 103 49-151 309-445 (491)
13 2gfp_A EMRD, multidrug resista 98.1 3.2E-07 1.1E-11 80.9 0.3 110 49-159 225-361 (375)
14 2xut_A Proton/peptide symporte 95.9 0.0041 1.4E-07 57.0 3.3 57 95-151 408-464 (524)
15 2g9p_A Antimicrobial peptide l 31.9 13 0.00043 17.7 0.4 13 79-91 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.9e-33 Score=258.32 Aligned_cols=274 Identities=25% Similarity=0.458 Sum_probs=196.6
Q ss_pred ccCCccccccccccccccccC--------CChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLK--------ESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~--------l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------- 92 (308)
.+|++.+..+...+.+.++++ .++.+.+++.+++.+|.++|++++|+++||+|||+++
T Consensus 23 ~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~ 102 (491)
T 4gc0_A 23 LFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGS 102 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 455666677777777766653 2345678999999999999999999999999999987
Q ss_pred ------------------------HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 048448 93 ------------------------PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIG 148 (308)
Q Consensus 93 ------------------------~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 148 (308)
++++++|+++|++.|+..++.+.+++|++|+++|++..++.+.+..+|.++++.++
T Consensus 103 a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~ 182 (491)
T 4gc0_A 103 AWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVN 182 (491)
T ss_dssp HCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcc
Confidence 24788999999999999999999999999999999999999999999999888776
Q ss_pred hhh------------hhHHHHHh----------hhcccccCchhHhhcCChHHHHHHHHHhcCCCcchHHHHHHH--HHH
Q 048448 149 ALM------------SWRILALT----------GLFFIPESPRWLAMIGKNQEFEVALSMVRGPNVDVSRELNEI--LSK 204 (308)
Q Consensus 149 ~~~------------~w~~~~~~----------~~~~~~esp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 204 (308)
... .||+.+.+ ..+++||||+|+..+++.+++++.+++..+++...++..+.. ...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 262 (491)
T 4gc0_A 183 YFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDH 262 (491)
T ss_dssp HHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHh
Confidence 543 47766554 557899999999999999999999888765432211111110 000
Q ss_pred ------------HHHHHHH-------------------HHHHHHhcCCccc---------------------hhhccccc
Q 048448 205 ------------RITLILQ-------------------ESLALINQLPRVN---------------------ILDLFNRR 232 (308)
Q Consensus 205 ------------~~~~~~~-------------------~~~~~~~~~~~~~---------------------~~~l~~~~ 232 (308)
..+.... ............. +.|-+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr 342 (491)
T 4gc0_A 263 GRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342 (491)
T ss_dssp HHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred hhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 0000000 0000000000000 00000000
Q ss_pred hhhHH-----------------------------HHHHHhhhccccccccceecccCCCCchhhHhHHHHHHHHHHHHHH
Q 048448 233 NIRFV-----------------------------NVYIAFYSIGMGPIPWVIMFEIFPLNIKGPGGSLVTLVNWIGSWAI 283 (308)
Q Consensus 233 ~~~~~-----------------------------~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~ 283 (308)
..... +++..+++.+++|++|++.+|++|++.|+++.|++++++++++++.
T Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~ 422 (491)
T 4gc0_A 343 PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV 422 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 4445667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc--------------------------------CCCCHHHHHhhcC
Q 048448 284 SYSFILLMTWSS--------------------------------CGRTLEEVQASVS 308 (308)
Q Consensus 284 ~~~~~~~~~~~~--------------------------------~g~~~~~~~~~~~ 308 (308)
++++|.+.+... ||||+||||++|+
T Consensus 423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 999988754211 9999999999986
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.79 E-value=6.4e-19 Score=159.75 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=107.4
Q ss_pred ccCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------
Q 048448 35 RKNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA---------------------- 92 (308)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~---------------------- 92 (308)
..+...+...+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (438)
T 3o7q_A 37 LWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN 116 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4455556667778889999999999999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+.++++|++.|++.|...+....++.|++|+++|++..++.+.+..+|.++++.++..+
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999988776
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.78 E-value=3.8e-20 Score=168.35 Aligned_cols=135 Identities=11% Similarity=0.022 Sum_probs=115.9
Q ss_pred cCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------
Q 048448 36 KNQAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------- 92 (308)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------- 92 (308)
.....+...+..+.+.+++ .++.+.+++.+++.++..++++++|+++||+|||+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 118 (451)
T 1pw4_A 40 YYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 118 (451)
T ss_dssp HHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 3444444556678899999 9999999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHh-------
Q 048448 93 -PLLDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S-WRILALT------- 159 (308)
Q Consensus 93 -~~~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-w~~~~~~------- 159 (308)
+.++++|++.|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+ + ||+.+++
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~ 198 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 198 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 24678899999999999999999999999999999999999999999999988887663 6 9987665
Q ss_pred ----hhcccccCchhH
Q 048448 160 ----GLFFIPESPRWL 171 (308)
Q Consensus 160 ----~~~~~~esp~~~ 171 (308)
..+++||+|+..
T Consensus 199 ~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 199 VALFAFAMMRDTPQSC 214 (451)
T ss_dssp HHHHHHHHCCCSSTTT
T ss_pred HHHHHHhhccCCHhhc
Confidence 335678888653
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.70 E-value=6.5e-18 Score=150.24 Aligned_cols=133 Identities=19% Similarity=0.221 Sum_probs=117.2
Q ss_pred CccccccccccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHH
Q 048448 38 QAKEQQNPTQFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDF 97 (308)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~ 97 (308)
...+...+..+.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++ +.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIA 93 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444555667888999999999999999999999999999999999999999988 67888
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh-----------hhc
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT-----------GLF 162 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~-----------~~~ 162 (308)
.|++.|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++..+ +||+.+++ ..+
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888775 89988876 234
Q ss_pred ccccCchh
Q 048448 163 FIPESPRW 170 (308)
Q Consensus 163 ~~~esp~~ 170 (308)
++||+++.
T Consensus 174 ~~~~~~~~ 181 (375)
T 2gfp_A 174 WMPETRPV 181 (375)
T ss_dssp SSCCCSTT
T ss_pred HCcccCCC
Confidence 57887654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.66 E-value=4.7e-16 Score=143.14 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=102.9
Q ss_pred cccccccccc-----cCCChhHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccchH--------------------HHHHH
Q 048448 44 NPTQFGIMAD-----LKESYAEYSLFGSILTIGAIIGAITSGRIADW-VARKGAA--------------------PLLDF 97 (308)
Q Consensus 44 ~~~~~~l~~~-----~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~-~Grr~~~--------------------~~~~~ 97 (308)
....+++.++ +|++..+.+++.+++.++..++++++|+++|| +|||+++ +.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344556555 99999999999999999999999999999999 8999988 77889
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCCC--chhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 98 GRFLAGCGIGVMSYVVPVYIAEITPKNL--RAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 98 ~r~l~G~~~g~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+|++.|++.|...+...++++|++|+++ |+...++++.+..+|..+++.++..+ +||+.+++
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999988 77788888899999998888887765 89998877
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.46 E-value=5.3e-13 Score=123.77 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=102.1
Q ss_pred cccccccccccC------CChhHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccchH---------------------HHH
Q 048448 44 NPTQFGIMADLK------ESYAEYSLFGSILTIGAIIGAITSGRIADWV-ARKGAA---------------------PLL 95 (308)
Q Consensus 44 ~~~~~~l~~~~~------l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~-Grr~~~---------------------~~~ 95 (308)
....+++.+++| +++.+.+++.+++.++..++++++|+++||+ |||+++ +.+
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF 112 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 334456778888 9999999999999999999999999999999 999987 457
Q ss_pred HHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHH---HHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 96 DFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATV---NQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 96 ~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
+++|++.|++.+...+...+++.|++|+++|++..++ .+.+..+|..+++.++..+ +|++.+++
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7889999999999999999999999999999877666 8888899999998887765 79988876
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.21 E-value=6.9e-13 Score=119.74 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=71.6
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchHH-----------HH-------------HHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAAP-----------LL-------------DFGRFLAG 103 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~~-----------~~-------------~~~r~l~G 103 (308)
.++.+++|+++.+.+++.+++.++..++++++|+++||+|||+++. .+ +.++++.|
T Consensus 32 ~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (417)
T 2cfq_A 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGG 111 (417)
T ss_dssp HHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466779999999999999999999999999999999999999880 00 01112222
Q ss_pred hhhhccccchhhhhhccCCC--CCchhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHh
Q 048448 104 CGIGVMSYVVPVYIAEITPK--NLRAALATVNQLFIVTGALFAYVIGALM---SWRILALT 159 (308)
Q Consensus 104 ~~~g~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~---~w~~~~~~ 159 (308)
++.|...+.....+.++.++ ++++...+....+..+|..+++.++..+ +|++.+++
T Consensus 112 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~ 172 (417)
T 2cfq_A 112 IYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWL 172 (417)
T ss_dssp SSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 22222222223333344432 3445555555555556666666655544 68888876
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.64 E-value=1e-07 Score=86.01 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=94.9
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccchH-----------------------HHHHHHHHHH
Q 048448 48 FGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWV--ARKGAA-----------------------PLLDFGRFLA 102 (308)
Q Consensus 48 ~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~--Grr~~~-----------------------~~~~~~r~l~ 102 (308)
..+.+.+|.++.+.+++.++..++.+++.++.|++.||+ |||+.+ +.+++..++.
T Consensus 277 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 277 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 344455899999999999999999999999999999999 999876 3445566778
Q ss_pred HhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHH-HHHHHHHHhhhh----hhHHHHHh
Q 048448 103 GCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVT-GALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 103 G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~----~w~~~~~~ 159 (308)
|++.+...+....++.|.+|++.|++..++.+....+ |..+++.+.+.+ +|+..+++
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888889999999999999999999999998 998888887765 67776665
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.62 E-value=1.1e-07 Score=87.06 Aligned_cols=100 Identities=15% Similarity=0.054 Sum_probs=73.5
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH------------------------HHHHHHHH--
Q 048448 47 QFGIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA------------------------PLLDFGRF-- 100 (308)
Q Consensus 47 ~~~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~------------------------~~~~~~r~-- 100 (308)
.+.+.+..+.+............+...++.++++++.||+|||+.+ ...++.-+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFY 379 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3456677777777777778888899999999999999999999977 11111111
Q ss_pred HHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 048448 101 LAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVI 147 (308)
Q Consensus 101 l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l 147 (308)
..+++. +..++.+.+.+|.+|.+.|+++.++.+....+|.++++.+
T Consensus 380 ~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~ 425 (491)
T 4gc0_A 380 VAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWT 425 (491)
T ss_dssp HHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 2345677899999999999999999888887777776544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.41 E-value=1.8e-07 Score=84.11 Aligned_cols=111 Identities=6% Similarity=-0.111 Sum_probs=86.9
Q ss_pred ccc-cccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-------------------HHHHHHHHHHHhhh
Q 048448 47 QFG-IMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-------------------PLLDFGRFLAGCGI 106 (308)
Q Consensus 47 ~~~-l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-------------------~~~~~~r~l~G~~~ 106 (308)
..+ +.+.+|.++.+.+++.++..++.+++.++.|+++||+|||+++ ...++.-++.|++.
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 361 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFM 361 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 345 5566699999999999999999999999999999999999988 22233447788888
Q ss_pred hccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHh
Q 048448 107 GVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----S-WRILALT 159 (308)
Q Consensus 107 g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~-w~~~~~~ 159 (308)
+...+....+..|.+|++ ++...++.. ...+|..+++.+.+.+ + ++..+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 888999999989999876 777777766 4457777777776654 4 5555444
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.36 E-value=2.9e-07 Score=82.73 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH--------------------HHHHHHHHHHHhhhhccccchhhhh
Q 048448 58 YAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA--------------------PLLDFGRFLAGCGIGVMSYVVPVYI 117 (308)
Q Consensus 58 ~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~--------------------~~~~~~r~l~G~~~g~~~~~~~~~~ 117 (308)
....++..++..++..++.++.|+++||+|||+++ +.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888889999999999999999999877 2233333445555555555667899
Q ss_pred hccCCCCCchhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 118 AEITPKNLRAALATV-NQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 118 ~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.|.+|++.|++..++ ++....+|..++|.+.+.+ ++...|.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~ 384 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence 999999999998888 4777778888877776654 55555544
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.24 E-value=1.5e-06 Score=79.51 Aligned_cols=103 Identities=14% Similarity=0.019 Sum_probs=83.9
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH----------------------------------HH
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA----------------------------------PL 94 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~----------------------------------~~ 94 (308)
+..+..+.+....+++.+...++..++.++.+++.||+|||+.. +.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW 388 (491)
T ss_dssp HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH
T ss_pred HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH
Confidence 34444566656677888888999999999999999999998532 12
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++.-++.|++.+...+....++.|.+|++.|+.+.++.+....+|..+++.+...+
T Consensus 389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888899999999999999999999999999999999999988765
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.14 E-value=3.2e-07 Score=80.91 Aligned_cols=110 Identities=17% Similarity=-0.006 Sum_probs=89.6
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHhhhhhcccccchH-----------------------HHHHHHHHHHHhh
Q 048448 49 GIMADLKESYAEYSLFGSILTIGAIIGAITSGRIADWVARKGAA-----------------------PLLDFGRFLAGCG 105 (308)
Q Consensus 49 ~l~~~~~l~~~~~~~~~s~~~~g~~~g~~~~g~l~d~~Grr~~~-----------------------~~~~~~r~l~G~~ 105 (308)
.+.+.+|.++.+.+.+.+...++..++.++.+++.||+|++..+ +.+++.-++.|++
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 44455889999999999999999999999999999999984333 2344566788899
Q ss_pred hhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHh
Q 048448 106 IGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM----SWRILALT 159 (308)
Q Consensus 106 ~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~----~w~~~~~~ 159 (308)
.+...+....++.|..| ++|++..++.+....+|..+++.+...+ +|+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999998 8999999999999999988887776655 45544443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.89 E-value=0.0041 Score=56.98 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhccccchhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 048448 95 LDFGRFLAGCGIGVMSYVVPVYIAEITPKNLRAALATVNQLFIVTGALFAYVIGALM 151 (308)
Q Consensus 95 ~~~~r~l~G~~~g~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 151 (308)
+++.-++.|++.+...+....++.|.+|++.||..+++.+....+|..+++.+...+
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667788888888899999999999999999999999999999999988887665
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=31.87 E-value=13 Score=17.69 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=9.6
Q ss_pred Hhhhhhcccccch
Q 048448 79 SGRIADWVARKGA 91 (308)
Q Consensus 79 ~g~l~d~~Grr~~ 91 (308)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5677788888754
Done!