Query 048449
Match_columns 288
No_of_seqs 111 out of 125
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03180 reversibly glycosylat 100.0 7E-100 2E-104 717.8 18.4 261 2-262 85-345 (346)
2 PF03214 RGP: Reversibly glyco 100.0 3.7E-93 8.1E-98 671.2 17.2 262 2-263 83-347 (348)
3 PF03385 DUF288: Protein of un 100.0 2.9E-31 6.4E-36 253.4 10.7 109 151-264 1-112 (390)
4 PF04583 Baculo_p74: Baculovir 72.4 1.7 3.6E-05 41.0 0.9 19 54-72 123-141 (249)
5 cd04195 GT2_AmsE_like GT2_AmsE 44.2 4.6 0.0001 33.9 -1.3 25 2-26 72-96 (201)
6 PF11341 DUF3143: Protein of u 38.9 7.1 0.00015 29.6 -0.8 22 62-83 41-63 (63)
7 PF09039 HTH_Tnp_Mu_2: Mu DNA 37.1 44 0.00095 27.6 3.5 48 200-253 31-79 (108)
8 PF10111 Glyco_tranf_2_2: Glyc 36.8 9.9 0.00022 35.1 -0.4 33 1-40 79-111 (281)
9 cd06434 GT2_HAS Hyaluronan syn 34.9 14 0.00029 31.9 0.1 24 3-26 70-93 (235)
10 cd02510 pp-GalNAc-T pp-GalNAc- 32.5 11 0.00023 34.7 -1.0 26 2-27 75-100 (299)
11 cd06423 CESA_like CESA_like is 31.7 18 0.0004 28.1 0.4 25 2-26 70-94 (180)
12 PF00535 Glycos_transf_2: Glyc 31.7 16 0.00034 28.7 0.0 25 2-26 70-94 (169)
13 cd06427 CESA_like_2 CESA_like_ 31.1 9.4 0.0002 33.7 -1.5 25 2-26 76-100 (241)
14 cd06433 GT_2_WfgS_like WfgS an 30.7 20 0.00043 29.4 0.5 25 2-26 67-91 (202)
15 KOG2492 CDK5 activator-binding 30.4 39 0.00085 34.6 2.5 60 150-210 395-466 (552)
16 cd06420 GT2_Chondriotin_Pol_N 29.8 16 0.00034 30.0 -0.3 24 2-25 71-94 (182)
17 cd04192 GT_2_like_e Subfamily 29.0 18 0.0004 30.6 -0.0 23 3-25 75-97 (229)
18 TIGR01556 rhamnosyltran L-rham 29.0 18 0.0004 32.7 -0.0 24 3-26 63-89 (281)
19 cd04186 GT_2_like_c Subfamily 28.6 28 0.0006 27.6 1.0 23 3-25 67-89 (166)
20 PF13026 DUF3887: Protein of u 23.7 2.1E+02 0.0046 23.4 5.3 54 194-262 4-57 (101)
21 KOG1798 DNA polymerase epsilon 23.6 1.1E+02 0.0024 36.3 4.6 28 216-261 969-996 (2173)
22 cd06442 DPM1_like DPM1_like re 23.3 33 0.0007 29.2 0.5 24 2-25 70-93 (224)
23 PF03993 DUF349: Domain of Unk 20.5 2.7E+02 0.0058 20.3 5.0 38 223-262 35-72 (77)
24 cd04184 GT2_RfbC_Mx_like Myxoc 20.3 34 0.00074 28.6 0.0 25 2-26 75-99 (202)
No 1
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=100.00 E-value=7.5e-100 Score=717.83 Aligned_cols=261 Identities=84% Similarity=1.445 Sum_probs=258.9
Q ss_pred ccceeecccceEEEeccCCccccCCCCCcccchhccccccccccCCCcccccccCCCCCCCCccCccCCCCCCCcchhhh
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKDPSGKEINALAQHIQNLLTPSTPLFFNTLYDPYRDGADFVRGYPFSLREGVPTAIS 81 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~~~G~~~d~~~~h~~~l~~~~~~~~fN~lY~~f~~~~~wPRGyPls~regv~~~iq 81 (288)
||||||+|++||||+|||||+|++|+.|+.||+++||+.||++|+||+|||+||+||+++++||||||||+|+||+|+||
T Consensus 85 R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~~pstp~~fNtLYdp~r~g~~fvRGYPfS~R~gv~vaiS 164 (346)
T PLN03180 85 RCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGVPTAVS 164 (346)
T ss_pred hhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcCCCCCCceeecccccCccCCcccCCCCccccCCcceEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCcccccccCCCccCcccccceeecCCCceeecccchhhhhhhhhchhhhccccCCCCcCCccchhHHHHHH
Q 048449 82 HGLWLNIPDYDAPTQLVKPRERNSRYVDAVMTIPKGSLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCA 161 (288)
Q Consensus 82 qGLw~~~PDVDAi~rL~~~~~~~~~f~~a~vtlp~Gt~~P~nsqNtaF~rea~gpA~y~l~m~~g~~~~R~~DIWrGy~~ 161 (288)
||||+|+|||||||||++|.++|++|++++||+|+|||+||||||||||||++|||||+++|++|++++|++|||+|||+
T Consensus 165 ~GLWln~PD~DA~t~l~k~~e~~t~yvdavvtip~gt~~pv~~~NlAF~ReligPA~y~g~m~~g~~i~R~dDiWsG~c~ 244 (346)
T PLN03180 165 HGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCA 244 (346)
T ss_pred cccccCCCcccchhhhccchhccceecccEEeccCCCEeecccchhhhhhhhcchhheecccCCCCcccchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEeecCceeeeccCCCccchHhhhhhhhcchhHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCChh
Q 048449 162 KVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFFQSVLLPKECTTVQKCYIELSRQVKEKLGPLDPY 241 (288)
Q Consensus 162 Qri~~~lG~~V~fg~P~v~h~r~h~~~~Dl~~E~~g~~~~e~ii~fl~~~~l~~~~~t~~~cy~eLa~~v~~~l~~~~~~ 241 (288)
|+||+|+|++|+||.|+|+|+|+||+|+||++|++|++++|+||+|||+++||+++.|+++||+|||+++|++|++.++|
T Consensus 245 K~i~dhLG~gVktG~Pyv~h~k~~n~~~dL~~E~~Gi~l~E~i~~ff~~~~l~~~a~t~~~cy~ela~~vk~~l~~~d~~ 324 (346)
T PLN03180 245 KVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSVRLPKEAVTVEDCYIELAKQVKEKLGKVDPY 324 (346)
T ss_pred HHHHHHhCcceecCCceEecCCcccHHHHHHhhccCeechHHHHHHHHhccCCcccCcHHHHHHHHHHHHHhhccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCh
Q 048449 242 FQKLGDAMVTWIEAWDQLNSP 262 (288)
Q Consensus 242 ~~~~a~~m~~Wl~dl~~vg~~ 262 (288)
|++.+++|++||++|+++|++
T Consensus 325 f~~~a~~M~~Wi~~w~~l~~~ 345 (346)
T PLN03180 325 FTKLADAMVTWIEAWKELNSP 345 (346)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999975
No 2
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=100.00 E-value=3.7e-93 Score=671.16 Aligned_cols=262 Identities=64% Similarity=1.126 Sum_probs=256.7
Q ss_pred ccceeecccceEEEeccCCccccCCCCCcccchhccccccccccCCCcccccccCCCCCCCCccCccCCCCCCCcchhhh
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKDPSGKEINALAQHIQNLLTPSTPLFFNTLYDPYRDGADFVRGYPFSLREGVPTAIS 81 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~~~G~~~d~~~~h~~~l~~~~~~~~fN~lY~~f~~~~~wPRGyPls~regv~~~iq 81 (288)
||||||+|.+||||+|||||+|++|+.|.+++.+.||+.|+..|+||.|||+||+||+++++||||||||+||||+|+||
T Consensus 83 R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~st~~~fNtLyd~~~e~~~f~RGyPfS~Regv~~~~s 162 (348)
T PF03214_consen 83 RNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTPSTPFFFNTLYDPYREGADFPRGYPFSLREGVDTAAS 162 (348)
T ss_pred hhhHhhhcccceEEEEccccccccCCccceehhhhccceeeeccCchhhhhhhcccccccCcccCCCCcccccCCceeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCcccccccCCCccCcccccceeecCCCceeecccchhhhhhhhhchhhhccccCCCCcCCccc---hhHHH
Q 048449 82 HGLWLNIPDYDAPTQLVKPRERNSRYVDAVMTIPKGSLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYD---DMWAG 158 (288)
Q Consensus 82 qGLw~~~PDVDAi~rL~~~~~~~~~f~~a~vtlp~Gt~~P~nsqNtaF~rea~gpA~y~l~m~~g~~~~R~~---DIWrG 158 (288)
||||+|+|||||||||+++.+|+++|+++++|+|+|||+|||||||||+||++||+||+++|+.++.++|++ |||+|
T Consensus 163 ~GLWln~PD~DA~t~l~~~~~r~~~~~d~~~~~p~gt~~pv~s~NlAf~Relip~~~~~~~~~~~~~~~R~d~~gDIWsG 242 (348)
T PF03214_consen 163 AGLWLNVPDLDAPTQLVKPTERNTRYVDAVLTIPRGTYLPVCSMNLAFDRELIPPAYYFPMMGNGWGIGRFDRFGDIWSG 242 (348)
T ss_pred cccccCCcccchhhhhccchhccccccCceEEecCCCEeecccchhhhhhhhcChheecccccCCCcccccccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999998888888888888999998 99999
Q ss_pred HHHHHHHHHhCCceEeecCceeeeccCCCccchHhhhhhhhcchhHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 048449 159 WCAKVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFFQSVLLPKECTTVQKCYIELSRQVKEKLGPL 238 (288)
Q Consensus 159 y~~Qri~~~lG~~V~fg~P~v~h~r~h~~~~Dl~~E~~g~~~~e~ii~fl~~~~l~~~~~t~~~cy~eLa~~v~~~l~~~ 238 (288)
||+|+||+|+|++|+||.|+|+|+|+|++|+||++|++|++++|+|++|||++++|+++.++++||+||+++++++|++.
T Consensus 243 ~f~k~~~d~Lg~~V~~G~P~v~H~~a~~~~~dL~~E~~Gi~l~E~i~~f~q~v~Ls~~A~t~~dcy~ELA~~VkekLg~~ 322 (348)
T PF03214_consen 243 YFLKVICDHLGHGVKTGLPYVWHNKAHNAFDDLKKEVPGIELNEDILPFFQSVKLSKTAVTVEDCYRELAKQVKEKLGSV 322 (348)
T ss_pred HHHHHHHHHcCCccccCCceEEecCCCchHHHHHhhccchhhHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCChh
Q 048449 239 DPYFQKLGDAMVTWIEAWDQLNSPA 263 (288)
Q Consensus 239 ~~~~~~~a~~m~~Wl~dl~~vg~~~ 263 (288)
++||++.+++|++||++|+++|+++
T Consensus 323 dp~F~kvAdaMv~WI~AW~~lns~~ 347 (348)
T PF03214_consen 323 DPYFTKVADAMVAWIKAWKELNSGS 347 (348)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999865
No 3
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=99.97 E-value=2.9e-31 Score=253.38 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=103.6
Q ss_pred ccchhHHHHHHHHHHHHhCCceEeecCceeeecc-CCCccchHhhhhhhhcchhHHHHhhhccCCCC-CCCHHHHHHHHH
Q 048449 151 RYDDMWAGWCAKVICDHLSLGVKTGLPYIWHSKA-SNPFVNLKKEYKGIYWQEEIIPFFQSVLLPKE-CTTVQKCYIELS 228 (288)
Q Consensus 151 R~~DIWrGy~~Qri~~~lG~~V~fg~P~v~h~r~-h~~~~Dl~~E~~g~~~~e~ii~fl~~~~l~~~-~~t~~~cy~eLa 228 (288)
|++|||||||+|||||.+|++|+|+||+|+|.|| |++++||++|.++|+.+|+||+||++|+|+.. +.++++|+++|+
T Consensus 1 RvTDIWRSY~aQRLLW~~G~~VsF~PpnV~Q~RNaHdYLkDF~DEk~LY~~sG~LV~FL~~W~~~~~n~~~L~~~Il~L~ 80 (390)
T PF03385_consen 1 RVTDIWRSYWAQRLLWLSGGTVSFVPPNVVQFRNAHDYLKDFKDEKDLYEDSGRLVEFLHEWRCSKGNSSTLFECILDLY 80 (390)
T ss_pred CchhHHHHHHHHHHHHHcCCeEEEcCCceeecccccccccchHHHHHHHHhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Confidence 8999999999999999999999999999999999 99999999999999999999999999999653 467999999999
Q ss_pred HHHHHHcCCCChhHH-HHHHHHHHHHHHHHhcCChhh
Q 048449 229 RQVKEKLGPLDPYFQ-KLGDAMVTWIEAWDQLNSPAQ 264 (288)
Q Consensus 229 ~~v~~~l~~~~~~~~-~~a~~m~~Wl~dl~~vg~~~~ 264 (288)
++|+++ +||+ +|+++|++||+||++|||.-+
T Consensus 81 ~~m~e~-----GfW~~~Dv~L~~AWL~DL~sVGY~fP 112 (390)
T PF03385_consen 81 VAMAEE-----GFWGEEDVKLMQAWLQDLKSVGYKFP 112 (390)
T ss_pred HHHHHc-----CCCcHHHHHHHHHHHHHHHHHHhhch
Confidence 999998 9997 599999999999999999866
No 4
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=72.36 E-value=1.7 Score=41.04 Aligned_cols=19 Identities=32% Similarity=0.551 Sum_probs=16.9
Q ss_pred ccCCCCCCCCccCccCCCC
Q 048449 54 LYDPYRDGADFVRGYPFSL 72 (288)
Q Consensus 54 lY~~f~~~~~wPRGyPls~ 72 (288)
++||||...+||||||=.+
T Consensus 123 ~WDPfGYnNMFPr~~ldDL 141 (249)
T PF04583_consen 123 FWDPFGYNNMFPREYLDDL 141 (249)
T ss_pred hcCcccccccCCCcchHHH
Confidence 4899999999999999655
No 5
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=44.22 E-value=4.6 Score=33.93 Aligned_cols=25 Identities=4% Similarity=-0.068 Sum_probs=21.3
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
+|.|+-.|..+||+.+|+|..+..+
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~ 96 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPD 96 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcH
Confidence 4677778889999999999998774
No 6
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=38.91 E-value=7.1 Score=29.60 Aligned_cols=22 Identities=50% Similarity=0.833 Sum_probs=19.9
Q ss_pred CCccCccCCCC-CCCcchhhhhc
Q 048449 62 ADFVRGYPFSL-REGVPTAISHG 83 (288)
Q Consensus 62 ~~wPRGyPls~-regv~~~iqqG 83 (288)
.+=-|.|||+. |+-++.||.+|
T Consensus 41 ~~~~rsF~YsLSR~DvE~Ai~~G 63 (63)
T PF11341_consen 41 QDIQRSFPYSLSREDVEAAIFSG 63 (63)
T ss_pred cccEEeccCcCCHHHHHHHHhcC
Confidence 77789999999 99999999887
No 7
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=37.12 E-value=44 Score=27.56 Aligned_cols=48 Identities=29% Similarity=0.413 Sum_probs=32.0
Q ss_pred cchhHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCChhHH-HHHHHHHHHH
Q 048449 200 WQEEIIPFFQSVLLPKECTTVQKCYIELSRQVKEKLGPLDPYFQ-KLGDAMVTWI 253 (288)
Q Consensus 200 ~~e~ii~fl~~~~l~~~~~t~~~cy~eLa~~v~~~l~~~~~~~~-~~a~~m~~Wl 253 (288)
..+++++||.+.=|-.+..++..||..|....+++ |+ . -....+..+|
T Consensus 31 ~~~eaw~~fksdYLr~e~Ps~~~cyrr~~~~a~~~-----Gw-~iPS~~t~rRri 79 (108)
T PF09039_consen 31 IDEEAWEFFKSDYLRPEKPSFSACYRRLKRAAKEN-----GW-PIPSEKTLRRRI 79 (108)
T ss_dssp S-HHHHHHHHHHHTSTT---HHHHHHHHHHHHHHH-----T------HHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHc-----CC-CCCCHHHHHHHH
Confidence 47789999999766668999999999999998888 43 2 1344555555
No 8
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=36.83 E-value=9.9 Score=35.12 Aligned_cols=33 Identities=3% Similarity=-0.113 Sum_probs=27.3
Q ss_pred CccceeecccceEEEeccCCccccCCCCCcccchhccccc
Q 048449 1 MQFFAFFADLFLFILTLVNGEKVAKDPSGKEINALAQHIQ 40 (288)
Q Consensus 1 ~~n~GYL~Aga~~I~~~DDDn~p~~~~~G~~~d~~~~h~~ 40 (288)
.||+|.-.|.+++|+.+|.|+.|.. ++++..+.
T Consensus 79 arN~g~~~A~~d~l~flD~D~i~~~-------~~i~~~~~ 111 (281)
T PF10111_consen 79 ARNIGAKYARGDYLIFLDADCIPSP-------DFIEKLLN 111 (281)
T ss_pred HHHHHHHHcCCCEEEEEcCCeeeCH-------HHHHHHHH
Confidence 3799999999999999999999987 45555444
No 9
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=34.89 E-value=14 Score=31.90 Aligned_cols=24 Identities=4% Similarity=-0.204 Sum_probs=20.3
Q ss_pred cceeecccceEEEeccCCccccCC
Q 048449 3 FFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 3 n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
|.|.-.|..+||+.+|+|+.+..+
T Consensus 70 n~g~~~a~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 70 AEGIRHVTTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHHHhCCCEEEEECCCceeChh
Confidence 456666789999999999999985
No 10
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=32.46 E-value=11 Score=34.72 Aligned_cols=26 Identities=12% Similarity=-0.194 Sum_probs=20.4
Q ss_pred ccceeecccceEEEeccCCccccCCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKDP 27 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~~ 27 (288)
+|.|.-.|..|||+.+|+|+.+..+.
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~w 100 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGW 100 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccH
Confidence 45555666789999999999997653
No 11
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=31.72 E-value=18 Score=28.14 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=19.8
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
+|.|.-.+..+||..+|+|..+..+
T Consensus 70 ~n~~~~~~~~~~i~~~D~D~~~~~~ 94 (180)
T cd06423 70 LNAGLRHAKGDIVVVLDADTILEPD 94 (180)
T ss_pred HHHHHHhcCCCEEEEECCCCCcChH
Confidence 3556666689999999999998763
No 12
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=31.70 E-value=16 Score=28.70 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=18.4
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
+|.|.-.|..+||+.+|||+.+..+
T Consensus 70 ~n~~~~~a~~~~i~~ld~D~~~~~~ 94 (169)
T PF00535_consen 70 RNRGIKHAKGEYILFLDDDDIISPD 94 (169)
T ss_dssp HHHHHHH--SSEEEEEETTEEE-TT
T ss_pred ccccccccceeEEEEeCCCceEcHH
Confidence 4566667778899999999999885
No 13
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=31.07 E-value=9.4 Score=33.68 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=20.9
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
+|.|+-.|..+||+.+|+|+.+..+
T Consensus 76 ~n~g~~~a~gd~i~~~DaD~~~~~~ 100 (241)
T cd06427 76 CNYALAFARGEYVVIYDAEDAPDPD 100 (241)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCChH
Confidence 4667777777999999999998874
No 14
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.71 E-value=20 Score=29.40 Aligned_cols=25 Identities=8% Similarity=-0.211 Sum_probs=20.6
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
+|.|+-.|.++||+.+|+|+.+..+
T Consensus 67 ~n~~~~~a~~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 67 MNKGIALATGDIIGFLNSDDTLLPG 91 (202)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCch
Confidence 4566666789999999999998874
No 15
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=30.36 E-value=39 Score=34.64 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=46.3
Q ss_pred CccchhHHHHHHH---------HHHHHhCCceEeecCceeeec--c-CCCccchHhhhhhhhcchhHHHHhhh
Q 048449 150 GRYDDMWAGWCAK---------VICDHLSLGVKTGLPYIWHSK--A-SNPFVNLKKEYKGIYWQEEIIPFFQS 210 (288)
Q Consensus 150 ~R~~DIWrGy~~Q---------ri~~~lG~~V~fg~P~v~h~r--~-h~~~~Dl~~E~~g~~~~e~ii~fl~~ 210 (288)
+-..|...|||.- -++..+|..|.|+-+|..+.+ + |++++|-++|++-=. ..+|+.||.+
T Consensus 395 glssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrr-l~~Li~~Fre 466 (552)
T KOG2492|consen 395 GLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRR-LFELITFFRE 466 (552)
T ss_pred cceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHH-HHHHHHHHHH
Confidence 3446888888853 489999999999999999776 6 999999988887533 3456666644
No 16
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=29.83 E-value=16 Score=30.04 Aligned_cols=24 Identities=8% Similarity=-0.169 Sum_probs=19.4
Q ss_pred ccceeecccceEEEeccCCccccC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAK 25 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~ 25 (288)
+|.|.=.|..+||..+|+|+.|..
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~ 94 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHP 94 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCH
Confidence 355666678899999999999966
No 17
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.03 E-value=18 Score=30.61 Aligned_cols=23 Identities=22% Similarity=-0.097 Sum_probs=18.1
Q ss_pred cceeecccceEEEeccCCccccC
Q 048449 3 FFAFFADLFLFILTLVNGEKVAK 25 (288)
Q Consensus 3 n~GYL~Aga~~I~~~DDDn~p~~ 25 (288)
|.|.-.|.+|||..+|+|+.+..
T Consensus 75 n~g~~~~~~d~i~~~D~D~~~~~ 97 (229)
T cd04192 75 TTAIKAAKGDWIVTTDADCVVPS 97 (229)
T ss_pred HHHHHHhcCCEEEEECCCcccCH
Confidence 34444457899999999999876
No 18
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=28.95 E-value=18 Score=32.67 Aligned_cols=24 Identities=13% Similarity=-0.082 Sum_probs=18.7
Q ss_pred cceeecc---cceEEEeccCCccccCC
Q 048449 3 FFAFFAD---LFLFILTLVNGEKVAKD 26 (288)
Q Consensus 3 n~GYL~A---ga~~I~~~DDDn~p~~~ 26 (288)
|.|.-+| ++|||+.+|||+.|..+
T Consensus 63 N~Gi~~a~~~~~d~i~~lD~D~~~~~~ 89 (281)
T TIGR01556 63 NQGLDASFRRGVQGVLLLDQDSRPGNA 89 (281)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHH
Confidence 4454444 78999999999999864
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.57 E-value=28 Score=27.61 Aligned_cols=23 Identities=13% Similarity=-0.086 Sum_probs=18.4
Q ss_pred cceeecccceEEEeccCCccccC
Q 048449 3 FFAFFADLFLFILTLVNGEKVAK 25 (288)
Q Consensus 3 n~GYL~Aga~~I~~~DDDn~p~~ 25 (288)
|.|.=.|+.+||+.+|||+.+..
T Consensus 67 n~~~~~~~~~~i~~~D~D~~~~~ 89 (166)
T cd04186 67 NQGIREAKGDYVLLLNPDTVVEP 89 (166)
T ss_pred hHHHhhCCCCEEEEECCCcEECc
Confidence 44555558999999999999876
No 20
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=23.73 E-value=2.1e+02 Score=23.44 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=40.4
Q ss_pred hhhhhhcchhHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhcCCh
Q 048449 194 EYKGIYWQEEIIPFFQSVLLPKECTTVQKCYIELSRQVKEKLGPLDPYFQKLGDAMVTWIEAWDQLNSP 262 (288)
Q Consensus 194 E~~g~~~~e~ii~fl~~~~l~~~~~t~~~cy~eLa~~v~~~l~~~~~~~~~~a~~m~~Wl~dl~~vg~~ 262 (288)
|.+.....+.+|..| ....+.+-.....+.|+..|. .-+++..|-..|.++|+-
T Consensus 4 ~Ekv~~~Aeevi~~~-------N~~dy~~v~~~~d~~mk~aL~--------~e~~~~~~~~~l~k~G~f 57 (101)
T PF13026_consen 4 EEKVKQKAEEVIDLL-------NEKDYDKVHEKYDEKMKNALT--------AEELKEKWGPVLEKAGAF 57 (101)
T ss_pred HHHHHHHHHHHHHHH-------hHhhHHHHHHHHhHHHHHhcC--------HHHHHHHHHHHHHhcccc
Confidence 455566678888888 556666666666777888865 346789999999999964
No 21
>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair]
Probab=23.59 E-value=1.1e+02 Score=36.30 Aligned_cols=28 Identities=21% Similarity=0.700 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhcCC
Q 048449 216 ECTTVQKCYIELSRQVKEKLGPLDPYFQKLGDAMVTWIEAWDQLNS 261 (288)
Q Consensus 216 ~~~t~~~cy~eLa~~v~~~l~~~~~~~~~~a~~m~~Wl~dl~~vg~ 261 (288)
.+.||++||-++|. |++. ||+-|.+-|.
T Consensus 969 ~GstLEEcY~aVA~-Vad~-----------------WLDiL~s~G~ 996 (2173)
T KOG1798|consen 969 KGSTLEECYSAVAA-VADR-----------------WLDILDSHGA 996 (2173)
T ss_pred CCCcHHHHHHHHHH-HHHH-----------------HHHHHHhccC
Confidence 69999999999875 4343 7777777774
No 22
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=23.34 E-value=33 Score=29.19 Aligned_cols=24 Identities=13% Similarity=-0.124 Sum_probs=19.4
Q ss_pred ccceeecccceEEEeccCCccccC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAK 25 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~ 25 (288)
+|.|.-.|..+||+.+|+|+.+..
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~ 93 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPP 93 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCH
Confidence 356667777799999999999865
No 23
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=20.52 E-value=2.7e+02 Score=20.28 Aligned_cols=38 Identities=8% Similarity=0.199 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHhcCCh
Q 048449 223 CYIELSRQVKEKLGPLDPYFQKLGDAMVTWIEAWDQLNSP 262 (288)
Q Consensus 223 cy~eLa~~v~~~l~~~~~~~~~~a~~m~~Wl~dl~~vg~~ 262 (288)
.-.+|.+.+++-....+ |....+.+..-.+.|+++|..
T Consensus 35 ~K~~Li~~~~~l~~~~d--~~~~~~~~k~l~~~Wk~iG~v 72 (77)
T PF03993_consen 35 KKEALIEEAEALAESED--WKEAAEEIKELQQEWKEIGPV 72 (77)
T ss_pred HHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHcCCC
Confidence 34445555544333334 777888899999999999964
No 24
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=20.33 E-value=34 Score=28.55 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=20.2
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
+|.|+=.|..+||..+|+|+.+..+
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~ 99 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPH 99 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChH
Confidence 4566666778999999999999774
Done!