Query 048449
Match_columns 288
No_of_seqs 111 out of 125
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fy7_A Beta-1,4-galactosyltran 44.7 5.2 0.00018 36.2 0.4 25 2-26 117-145 (287)
2 3bcv_A Putative glycosyltransf 32.9 12 0.00041 30.9 0.7 25 2-26 76-100 (240)
3 1qg8_A Protein (spore coat pol 26.1 16 0.00053 30.5 0.3 25 2-26 80-104 (255)
4 2ffu_A Ppgalnact-2, polypeptid 23.2 11 0.00038 35.8 -1.4 26 2-27 138-163 (501)
5 1xhb_A Polypeptide N-acetylgal 22.4 11 0.00039 35.2 -1.4 26 2-27 106-131 (472)
6 2lez_A Secreted effector prote 22.3 57 0.0019 27.4 3.0 33 201-236 18-50 (145)
7 2d7i_A Polypeptide N-acetylgal 18.2 21 0.00071 34.9 -0.7 26 2-27 188-213 (570)
8 4gnt_B Carbohydrate-responsive 16.4 58 0.002 19.5 1.2 11 154-164 9-19 (26)
9 3s1b_A Mini-Z; VEGF, cystine k 15.1 7.9 0.00027 24.4 -2.9 9 13-21 26-34 (34)
10 2nxv_A ATP synthase subunits r 13.2 57 0.002 27.8 0.9 25 2-26 66-90 (249)
No 1
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=44.75 E-value=5.2 Score=36.18 Aligned_cols=25 Identities=8% Similarity=-0.169 Sum_probs=21.8
Q ss_pred cccee----ecccceEEEeccCCccccCC
Q 048449 2 QFFAF----FADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GY----L~Aga~~I~~~DDDn~p~~~ 26 (288)
||.|+ -.|..+||+.+|+|+.|..+
T Consensus 117 ~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 117 LNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred hhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 68888 55688999999999999885
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=32.87 E-value=12 Score=30.85 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=20.8
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
||.|.-.|..+||+.+|+|..+..+
T Consensus 76 ~N~g~~~a~g~~i~~lD~Dd~~~~~ 100 (240)
T 3bcv_A 76 CNSGLDVATGEYVAFCDSDDYVDSD 100 (240)
T ss_dssp HHHHHHHCCSSEEEECCTTCCCCTT
T ss_pred HHHHHHHcCCCEEEEECCCCcCCHH
Confidence 5677777778999999999998763
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=26.08 E-value=16 Score=30.52 Aligned_cols=25 Identities=12% Similarity=-0.154 Sum_probs=20.1
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
||.|.-.|..+||..+|+|+.+..+
T Consensus 80 ~N~gi~~a~g~~i~~lD~Dd~~~~~ 104 (255)
T 1qg8_A 80 INQAIEMAEGEYITYATDDNIYMPD 104 (255)
T ss_dssp HHHHHHHCCCSEEEEEETTEEECTT
T ss_pred HHHHHHHcCCCEEEEeCCCCccChH
Confidence 4566666678999999999998763
No 4
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=23.19 E-value=11 Score=35.80 Aligned_cols=26 Identities=8% Similarity=-0.219 Sum_probs=21.5
Q ss_pred ccceeecccceEEEeccCCccccCCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKDP 27 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~~ 27 (288)
||.|.-.|..+||+.+|+|+.+..+.
T Consensus 138 ~N~G~~~A~gd~i~flD~D~~~~p~~ 163 (501)
T 2ffu_A 138 RVRGADAAQAKVLTFLDSHCECNEHW 163 (501)
T ss_dssp HHHHHHHCCSSEEEECCSSEEECTTC
T ss_pred HHHHHHhcCCCEEEEECCCcccCccH
Confidence 46777777899999999999987753
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=22.44 E-value=11 Score=35.22 Aligned_cols=26 Identities=8% Similarity=-0.238 Sum_probs=21.1
Q ss_pred ccceeecccceEEEeccCCccccCCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKDP 27 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~~ 27 (288)
||.|.-.|..+||+.+|+|+.+..+.
T Consensus 106 ~N~g~~~A~gd~i~flD~D~~~~p~~ 131 (472)
T 1xhb_A 106 RLKGAAVSRGQVITFLDAHCECTAGW 131 (472)
T ss_dssp HHHHHHHCCSSEEEEEESSEEECTTC
T ss_pred HHHHHHhccCCeEEEECCCeEeCccH
Confidence 45666667899999999999988753
No 6
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=22.26 E-value=57 Score=27.39 Aligned_cols=33 Identities=30% Similarity=0.271 Sum_probs=24.5
Q ss_pred chhHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHcC
Q 048449 201 QEEIIPFFQSVLLPKECTTVQKCYIELSRQVKEKLG 236 (288)
Q Consensus 201 ~e~ii~fl~~~~l~~~~~t~~~cy~eLa~~v~~~l~ 236 (288)
.|.||.|| .|-.-....++||.||+++|...|.
T Consensus 18 ~E~IiNFF---T~ggvrr~n~~~y~e~~e~mt~aL~ 50 (145)
T 2lez_A 18 LEYIINFF---TCGGIRRRNETQYQELIETMAETLK 50 (145)
T ss_dssp HHHHHHHH---HHCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh---cccchhhhhHHHHHHHHHHHHHHHH
Confidence 57888888 2211246699999999999988743
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=18.17 E-value=21 Score=34.94 Aligned_cols=26 Identities=8% Similarity=-0.196 Sum_probs=21.2
Q ss_pred ccceeecccceEEEeccCCccccCCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKDP 27 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~~ 27 (288)
||.|.-.|..+||+.+|+|+.+..+.
T Consensus 188 ~N~G~~~A~gd~i~fLD~D~~~~p~~ 213 (570)
T 2d7i_A 188 RMLGASVATGDVITFLDSHCEANVNW 213 (570)
T ss_dssp HHHHHHHCCSSEEEECCSSEEECTTC
T ss_pred HHHHHHhcCCCEEEEEcCCccccccH
Confidence 46666677789999999999997753
No 8
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=16.35 E-value=58 Score=19.49 Aligned_cols=11 Identities=18% Similarity=0.990 Sum_probs=8.9
Q ss_pred hhHHHHHHHHH
Q 048449 154 DMWAGWCAKVI 164 (288)
Q Consensus 154 DIWrGy~~Qri 164 (288)
-|||.|+.|-+
T Consensus 9 aiwrawyiqyv 19 (26)
T 4gnt_B 9 AIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 59999998843
No 9
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=15.10 E-value=7.9 Score=24.45 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=7.1
Q ss_pred EEEeccCCc
Q 048449 13 FILTLVNGE 21 (288)
Q Consensus 13 ~I~~~DDDn 21 (288)
-|++|||||
T Consensus 26 kivsidddc 34 (34)
T 3s1b_A 26 KIVSIDDDC 34 (34)
T ss_dssp HHHHHHHHC
T ss_pred HHhccCCCC
Confidence 367899987
No 10
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=13.20 E-value=57 Score=27.81 Aligned_cols=25 Identities=0% Similarity=-0.168 Sum_probs=21.0
Q ss_pred ccceeecccceEEEeccCCccccCC
Q 048449 2 QFFAFFADLFLFILTLVNGEKVAKD 26 (288)
Q Consensus 2 ~n~GYL~Aga~~I~~~DDDn~p~~~ 26 (288)
+|.|--.|..+||+.+|.|+.+..+
T Consensus 66 ~N~Gi~~A~g~yl~fln~D~~~~~~ 90 (249)
T 2nxv_A 66 HKQMLPRCKGRYVIFCHEDVELVDR 90 (249)
T ss_dssp HHHHGGGCCSSEEEEEETTEECSSC
T ss_pred HHHHHHhcCCCEEEEECCCcccCcc
Confidence 4777777888999999999999654
Done!