BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048450
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 520

 Score = 30.4 bits (67), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 2   PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWI 61
           PR+  L + S NK+K++P  +++  ALQEL++ S  L      + DR T+    L  +W+
Sbjct: 421 PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS----LQKIWL 475

Query: 62  SDCP 65
              P
Sbjct: 476 HTNP 479


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 4   LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELP 43
           L +LT+   N L+ALP  +     L+ELSI +C  L ELP
Sbjct: 129 LETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELP 167


>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
           Element-Binding Transcription Factor 2
          Length = 66

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 100 GEDWHKISHIPHIKWSI----TRWCCRITSF 126
           G+ +H++ H PHI  S+     +W CR   F
Sbjct: 30  GQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.473 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,712,813
Number of Sequences: 62578
Number of extensions: 123003
Number of successful extensions: 236
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 6
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)