Query 048450
Match_columns 133
No_of_seqs 220 out of 1950
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.1 2.8E-10 6E-15 94.8 7.4 87 2-93 778-884 (1153)
2 PLN03210 Resistant to P. syrin 99.0 1.9E-09 4.1E-14 90.0 8.5 86 1-92 633-718 (1153)
3 PLN00113 leucine-rich repeat r 98.9 3.3E-09 7.1E-14 86.9 6.0 82 3-88 165-246 (968)
4 PLN00113 leucine-rich repeat r 98.8 4.6E-09 9.9E-14 86.1 5.8 84 2-89 140-223 (968)
5 PF13855 LRR_8: Leucine rich r 98.7 3.9E-08 8.4E-13 54.6 5.1 58 2-64 1-59 (61)
6 KOG0617 Ras suppressor protein 98.6 3.2E-09 6.9E-14 70.9 -1.1 78 4-88 35-112 (264)
7 PF13855 LRR_8: Leucine rich r 98.6 2.3E-07 5.1E-12 51.4 5.3 59 26-89 1-60 (61)
8 PLN03150 hypothetical protein; 98.5 2.8E-07 6.1E-12 72.8 5.4 82 4-89 420-501 (623)
9 PLN03150 hypothetical protein; 98.4 5.4E-07 1.2E-11 71.2 5.7 88 1-92 441-529 (623)
10 KOG4658 Apoptotic ATPase [Sign 98.4 1.3E-07 2.9E-12 77.0 1.7 83 1-88 570-652 (889)
11 KOG0472 Leucine-rich repeat pr 98.3 2.9E-07 6.3E-12 68.5 2.6 84 1-89 434-539 (565)
12 KOG0617 Ras suppressor protein 98.3 5.3E-08 1.1E-12 65.1 -1.3 82 2-89 56-138 (264)
13 KOG0532 Leucine-rich repeat (L 98.2 5.7E-08 1.2E-12 74.7 -3.0 99 4-116 145-243 (722)
14 PRK15386 type III secretion pr 98.2 2.6E-06 5.5E-11 64.0 5.2 60 2-71 52-111 (426)
15 PF14580 LRR_9: Leucine-rich r 98.2 1.1E-06 2.3E-11 59.0 2.5 76 4-88 21-98 (175)
16 PF12799 LRR_4: Leucine Rich r 98.1 6.3E-06 1.4E-10 42.8 3.6 40 2-43 1-40 (44)
17 PF14580 LRR_9: Leucine-rich r 98.0 3E-06 6.5E-11 56.8 2.4 82 1-90 41-125 (175)
18 KOG0618 Serine/threonine phosp 97.9 1.9E-06 4E-11 69.6 -0.7 78 1-86 382-460 (1081)
19 KOG0444 Cytoskeletal regulator 97.9 3.2E-07 7E-12 71.9 -5.0 77 4-87 224-300 (1255)
20 KOG4658 Apoptotic ATPase [Sign 97.9 5.5E-06 1.2E-10 67.8 1.7 85 3-92 546-632 (889)
21 KOG0444 Cytoskeletal regulator 97.8 3.4E-06 7.5E-11 66.3 -0.7 82 3-90 104-185 (1255)
22 PF12799 LRR_4: Leucine Rich r 97.7 5.9E-05 1.3E-09 39.1 3.5 40 26-71 1-40 (44)
23 PRK15386 type III secretion pr 97.6 9.9E-05 2.2E-09 55.7 4.6 77 3-91 73-169 (426)
24 KOG0472 Leucine-rich repeat pr 97.6 6.4E-06 1.4E-10 61.6 -1.9 70 14-90 239-309 (565)
25 KOG0532 Leucine-rich repeat (L 97.6 6.3E-06 1.4E-10 63.8 -2.3 110 4-132 123-232 (722)
26 cd00116 LRR_RI Leucine-rich re 97.4 3.6E-05 7.7E-10 55.5 0.1 11 78-88 193-203 (319)
27 KOG4194 Membrane glycoprotein 97.3 0.00022 4.8E-09 55.9 3.6 38 5-44 81-119 (873)
28 KOG4194 Membrane glycoprotein 97.3 8.6E-05 1.9E-09 58.1 1.1 114 2-129 197-335 (873)
29 PRK15370 E3 ubiquitin-protein 97.2 0.00065 1.4E-08 55.1 5.4 31 55-88 263-293 (754)
30 PRK15387 E3 ubiquitin-protein 97.2 0.00042 9.2E-09 56.2 4.1 34 55-89 423-456 (788)
31 KOG3665 ZYG-1-like serine/thre 97.1 0.00015 3.3E-09 58.2 0.6 80 1-87 147-229 (699)
32 KOG0618 Serine/threonine phosp 97.1 9.2E-05 2E-09 60.2 -0.9 80 3-89 46-125 (1081)
33 cd00116 LRR_RI Leucine-rich re 97.0 0.00015 3.3E-09 52.2 -0.3 83 2-89 81-176 (319)
34 COG4886 Leucine-rich repeat (L 96.9 0.00019 4E-09 53.6 -0.5 79 3-88 141-219 (394)
35 PRK15370 E3 ubiquitin-protein 96.8 0.0025 5.4E-08 51.8 5.3 73 3-88 200-272 (754)
36 KOG4237 Extracellular matrix p 96.8 0.00038 8.3E-09 52.1 0.2 81 1-87 273-355 (498)
37 KOG1259 Nischarin, modulator o 96.7 0.00017 3.7E-09 52.5 -2.0 84 2-89 307-410 (490)
38 COG4886 Leucine-rich repeat (L 96.6 0.0011 2.3E-08 49.6 1.8 80 3-89 117-197 (394)
39 PRK15387 E3 ubiquitin-protein 96.6 0.0049 1.1E-07 50.3 5.3 9 55-63 303-311 (788)
40 KOG4237 Extracellular matrix p 96.6 0.00093 2E-08 50.1 1.1 92 21-122 269-361 (498)
41 KOG3665 ZYG-1-like serine/thre 96.4 0.0015 3.2E-08 52.6 1.7 84 1-89 172-261 (699)
42 PF00560 LRR_1: Leucine Rich R 96.2 0.0023 5.1E-08 27.9 1.0 17 4-21 2-18 (22)
43 KOG1259 Nischarin, modulator o 96.2 0.0015 3.3E-08 47.7 0.6 77 3-87 285-361 (490)
44 KOG3864 Uncharacterized conser 96.2 0.00035 7.5E-09 47.8 -2.5 68 22-92 121-190 (221)
45 KOG4579 Leucine-rich repeat (L 96.1 0.00024 5.2E-09 46.1 -3.6 51 7-63 58-109 (177)
46 PF13504 LRR_7: Leucine rich r 96.0 0.0055 1.2E-07 25.0 1.4 10 3-12 2-11 (17)
47 KOG0531 Protein phosphatase 1, 95.9 0.0052 1.1E-07 46.5 2.1 78 2-88 95-172 (414)
48 KOG3864 Uncharacterized conser 95.8 0.00079 1.7E-08 46.1 -2.3 63 2-67 125-189 (221)
49 KOG4579 Leucine-rich repeat (L 95.2 0.0013 2.8E-08 42.7 -2.7 80 5-90 30-112 (177)
50 KOG0531 Protein phosphatase 1, 94.9 0.0074 1.6E-07 45.7 0.0 80 1-89 117-197 (414)
51 KOG3207 Beta-tubulin folding c 94.8 0.0071 1.5E-07 46.0 -0.2 87 1-89 171-282 (505)
52 KOG3207 Beta-tubulin folding c 94.8 0.014 3.1E-07 44.4 1.4 61 25-89 245-312 (505)
53 KOG2739 Leucine-rich acidic nu 94.7 0.021 4.5E-07 40.5 1.9 62 23-89 62-127 (260)
54 KOG2120 SCF ubiquitin ligase, 94.6 0.019 4.2E-07 42.0 1.6 82 2-89 286-374 (419)
55 KOG1644 U2-associated snRNP A' 94.4 0.13 2.7E-06 35.7 5.1 13 76-88 138-150 (233)
56 KOG1859 Leucine-rich repeat pr 94.4 0.0029 6.3E-08 51.1 -3.2 77 2-87 187-263 (1096)
57 KOG1644 U2-associated snRNP A' 94.3 0.099 2.1E-06 36.2 4.3 78 4-89 44-124 (233)
58 KOG2120 SCF ubiquitin ligase, 93.2 0.0095 2.1E-07 43.5 -2.1 35 3-37 235-271 (419)
59 KOG2123 Uncharacterized conser 92.2 0.0056 1.2E-07 44.3 -4.3 16 50-65 84-99 (388)
60 KOG2739 Leucine-rich acidic nu 91.5 0.14 3.1E-06 36.4 2.0 83 1-89 64-154 (260)
61 KOG4341 F-box protein containi 90.4 0.055 1.2E-06 41.1 -0.8 11 3-13 321-331 (483)
62 KOG1947 Leucine rich repeat pr 90.0 0.1 2.2E-06 39.6 0.2 39 53-91 268-308 (482)
63 smart00369 LRR_TYP Leucine-ric 89.9 0.24 5.3E-06 22.0 1.4 17 2-19 2-18 (26)
64 smart00370 LRR Leucine-rich re 89.9 0.24 5.3E-06 22.0 1.4 17 2-19 2-18 (26)
65 PF13306 LRR_5: Leucine rich r 89.9 3.1 6.8E-05 25.5 7.2 77 2-87 12-90 (129)
66 smart00367 LRR_CC Leucine-rich 89.1 0.29 6.3E-06 21.9 1.4 13 27-39 3-15 (26)
67 KOG2123 Uncharacterized conser 88.8 0.0094 2E-07 43.2 -5.6 77 4-89 21-99 (388)
68 PF13306 LRR_5: Leucine rich r 85.7 5.7 0.00012 24.3 6.4 76 2-87 35-112 (129)
69 KOG1859 Leucine-rich repeat pr 84.0 0.099 2.2E-06 42.7 -2.8 69 14-89 175-243 (1096)
70 KOG1947 Leucine rich repeat pr 83.2 0.082 1.8E-06 40.1 -3.5 91 2-92 188-283 (482)
71 KOG4341 F-box protein containi 83.2 0.4 8.6E-06 36.7 0.2 92 2-93 346-441 (483)
72 KOG1909 Ran GTPase-activating 80.6 0.68 1.5E-05 34.6 0.6 41 49-89 208-252 (382)
73 KOG2982 Uncharacterized conser 77.9 1.2 2.7E-05 32.9 1.2 15 23-37 94-108 (418)
74 PF13516 LRR_6: Leucine Rich r 75.8 1.9 4.2E-05 18.5 1.2 11 2-12 2-12 (24)
75 smart00364 LRR_BAC Leucine-ric 72.8 2.6 5.5E-05 19.1 1.1 16 3-19 3-18 (26)
76 KOG2982 Uncharacterized conser 60.1 9.2 0.0002 28.5 2.5 32 1-35 96-130 (418)
77 smart00365 LRR_SD22 Leucine-ri 47.5 17 0.00036 16.3 1.4 10 26-35 2-11 (26)
78 smart00368 LRR_RI Leucine rich 43.9 17 0.00036 16.3 1.2 10 3-12 3-12 (28)
79 KOG0473 Leucine-rich repeat pr 26.1 0.91 2E-05 32.4 -6.8 59 25-89 64-122 (326)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.09 E-value=2.8e-10 Score=94.82 Aligned_cols=87 Identities=29% Similarity=0.479 Sum_probs=64.3
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc------------
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV------------ 69 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~------------ 69 (133)
++|+.|++++|+.+..+|..++++++|+.|++.+|..++.+|. .+ .+++|+.|++++|..++.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCccccccccccccCEeE
Confidence 4678888888888888888888888888888888888888886 44 577777777777765544
Q ss_pred --------cCcCCCCCCCccEEEEecCchhHH
Q 048450 70 --------LPDYLLQTTTLQELTIHRCPLLEN 93 (133)
Q Consensus 70 --------lp~~~~~l~~L~~L~i~~c~~l~~ 93 (133)
+|.++..+++|+.|++.+|+.+..
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 344455566777777777776663
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.99 E-value=1.9e-09 Score=89.98 Aligned_cols=86 Identities=29% Similarity=0.528 Sum_probs=64.9
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++|+.|+++++..++.+| .+..+++|+.|++.+|..+..+|. .++++++|+.|++++|+.++.+|..+ ++++|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 3567777777776677776 466777888888888877777877 77778888888888888888888665 57788
Q ss_pred cEEEEecCchhH
Q 048450 81 QELTIHRCPLLE 92 (133)
Q Consensus 81 ~~L~i~~c~~l~ 92 (133)
+.|++++|..+.
T Consensus 707 ~~L~Lsgc~~L~ 718 (1153)
T PLN03210 707 YRLNLSGCSRLK 718 (1153)
T ss_pred CEEeCCCCCCcc
Confidence 888888876554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.88 E-value=3.3e-09 Score=86.95 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=37.2
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|++|+++++.....+|..++++++|++|++++|...+.+|. .++.+++|++|+++++.....+|..+..+++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 344444444333333444444444444444444433333444 4444555555555444433344544555555555
Q ss_pred EEEecC
Q 048450 83 LTIHRC 88 (133)
Q Consensus 83 L~i~~c 88 (133)
|++++|
T Consensus 241 L~L~~n 246 (968)
T PLN00113 241 LDLVYN 246 (968)
T ss_pred EECcCc
Confidence 555544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.85 E-value=4.6e-09 Score=86.13 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=57.4
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++.....+|..++.+++|+.|+++++...+.+|. .++++++|++|++++|.....+|..+.++++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 4566666666544445666667777777777777655556666 677777777777777666666777777777778
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
.|+++++.
T Consensus 216 ~L~L~~n~ 223 (968)
T PLN00113 216 WIYLGYNN 223 (968)
T ss_pred EEECcCCc
Confidence 77777664
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=3.9e-08 Score=54.63 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDC 64 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c 64 (133)
|+|++|+++++ .+..+|+ .+..+++|+.|+++++. +..++.+ .+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~---~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPD---AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETT---TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHH---HHcCCCCCCEEeCcCC
Confidence 45566666654 5555552 34556666666666532 5555543 4555666666665554
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.63 E-value=3.2e-09 Score=70.87 Aligned_cols=78 Identities=26% Similarity=0.445 Sum_probs=45.7
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL 83 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 83 (133)
...|.+++ +++..+|+.+..+.+|+.|++++ .+++.+|. +++.++.|+.|.+. .+.+..+|.+++.++.|+.|
T Consensus 35 ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~----~issl~klr~lnvg-mnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 35 ITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPT----SISSLPKLRILNVG-MNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcCh----hhhhchhhhheecc-hhhhhcCccccCCCchhhhh
Confidence 34455555 35555666666666666666665 34666666 56666666666553 24455566666666666666
Q ss_pred EEecC
Q 048450 84 TIHRC 88 (133)
Q Consensus 84 ~i~~c 88 (133)
++..+
T Consensus 108 dltyn 112 (264)
T KOG0617|consen 108 DLTYN 112 (264)
T ss_pred hcccc
Confidence 66543
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=2.3e-07 Score=51.43 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=50.3
Q ss_pred CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCccEEEEecCc
Q 048450 26 TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELTIHRCP 89 (133)
Q Consensus 26 ~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~ 89 (133)
|+|+.|+++++ ++..+|.+ .+..+++|++|++++ +.++.++. .+.++++|++|+++++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~---~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD---SFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT---TTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH---HHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57999999997 69999875 788999999999997 55778875 57899999999999875
No 8
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=2.8e-07 Score=72.81 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=67.4
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL 83 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 83 (133)
++.|+++++..-+.+|..++.+++|+.|+++++...+.+|. .++.+++|+.|+++++...+.+|..+.++++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 56678888665567888888899999999998765567887 78889999999998877666888888889999999
Q ss_pred EEecCc
Q 048450 84 TIHRCP 89 (133)
Q Consensus 84 ~i~~c~ 89 (133)
+++++.
T Consensus 496 ~Ls~N~ 501 (623)
T PLN03150 496 NLNGNS 501 (623)
T ss_pred ECcCCc
Confidence 998875
No 9
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=5.4e-07 Score=71.22 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCC-CC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQT-TT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~ 79 (133)
+++|+.|+++++...+.+|..++.+++|+.|+++++...+.+|. .++.+++|+.|+++++...+.+|..+... .+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 46899999999866678998899999999999999876668888 89999999999999988777899877643 35
Q ss_pred ccEEEEecCchhH
Q 048450 80 LQELTIHRCPLLE 92 (133)
Q Consensus 80 L~~L~i~~c~~l~ 92 (133)
+..+++.+++.+.
T Consensus 517 ~~~l~~~~N~~lc 529 (623)
T PLN03150 517 RASFNFTDNAGLC 529 (623)
T ss_pred CceEEecCCcccc
Confidence 6778888776443
No 10
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=1.3e-07 Score=76.99 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=69.6
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+|.|++|++++|..+..+|..++.|-+|++|++++. .+..+|. +++++..|.+|++..+..+..+|.....+++|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPS----GLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-Cccccch----HHHHHHhhheeccccccccccccchhhhcccc
Confidence 578899999988899999999999999999999884 4888998 88899999999998877777776655668888
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|.+..-
T Consensus 645 r~L~l~~s 652 (889)
T KOG4658|consen 645 RVLRLPRS 652 (889)
T ss_pred cEEEeecc
Confidence 88888653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.34 E-value=2.9e-07 Score=68.51 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=68.6
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCC----------------------CCccccccccccCCCCCCccE
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCD----------------------LLEELPILEDRRTTDIPRLTS 58 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~----------------------~l~~lp~~~~~~~~~l~~L~~ 58 (133)
+++|..|++++ +.+-++|..++.+-.|+.|+++.+. ++++++.. ++++|.+|..
T Consensus 434 l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~---~l~nm~nL~t 509 (565)
T KOG0472|consen 434 LQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS---GLKNMRNLTT 509 (565)
T ss_pred hhcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH---Hhhhhhhcce
Confidence 46778888988 4788899889999999999998742 23444441 4788999999
Q ss_pred EeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450 59 LWISDCPNLKVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 59 L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
|++.. +.+..+|+.++++++|++|.+++++
T Consensus 510 LDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 510 LDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eccCC-CchhhCChhhccccceeEEEecCCc
Confidence 99976 6789999999999999999999987
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.33 E-value=5.3e-08 Score=65.13 Aligned_cols=82 Identities=23% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCC-CCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPN-LKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~-l~~lp~~~~~l~~L 80 (133)
.+|++|++.+ +.++.+|..+..++.|+.|++.- ..+.-+|. ++|+++.|+.|++.+.+. -.++|..+..++.|
T Consensus 56 ~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lpr----gfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 56 KNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPR----GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred hhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCcc----ccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 4788899988 58999999999999999999874 56888899 899999999999987542 34688888788889
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
+.|++.++.
T Consensus 130 ralyl~dnd 138 (264)
T KOG0617|consen 130 RALYLGDND 138 (264)
T ss_pred HHHHhcCCC
Confidence 988888764
No 13
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=5.7e-08 Score=74.70 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=54.5
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL 83 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 83 (133)
|+.|.+++ ++++.+|+.++.++.|..|+.+.|. +..+|. .++.+.+|+.|.++. +.+..+|+.+..+ .|..|
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slps----ql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi~l 216 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPS----QLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLIRL 216 (722)
T ss_pred ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchH----HhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ceeee
Confidence 55665665 4677777777766777777776643 555555 555555555555544 3344455554444 55555
Q ss_pred EEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450 84 TIHRCPLLENRYREGKGEDWHKISHIPHIKWSI 116 (133)
Q Consensus 84 ~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~ 116 (133)
|++.++ +. ..+..+-++.|+++|.+.+
T Consensus 217 DfScNk-is-----~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 217 DFSCNK-IS-----YLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred ecccCc-ee-----ecchhhhhhhhheeeeecc
Confidence 555322 22 1233445556666665553
No 14
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=2.6e-06 Score=64.02 Aligned_cols=60 Identities=28% Similarity=0.533 Sum_probs=36.2
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP 71 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp 71 (133)
.+++.|++++| .++.+|. --.+|+.|.+.+|..++.+|. .+ .++|++|.+.+|..+..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc----hh--hhhhhheEccCcccccccc
Confidence 45677777776 6666661 112577777777777766665 33 2456666666665454444
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=1.1e-06 Score=59.01 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=17.8
Q ss_pred ccEEeecCCCCCccCCccCC-CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCCCcc
Q 048450 4 LSSLTVGSCNKLKALPDYLL-QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTTTLQ 81 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~ 81 (133)
+++|+++++ .+..+. .++ .+.+|+.|+++++. ++.++ .+..++.|++|++++ +.++++.+++ ..+++|+
T Consensus 21 ~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-----~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 21 LRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-----GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--T-----T----TT--EEE--S-S---S-CHHHHHH-TT--
T ss_pred ccccccccc-cccccc-chhhhhcCCCEEECCCCC-Ccccc-----CccChhhhhhcccCC-CCCCccccchHHhCCcCC
Confidence 455666553 343332 333 35566666666643 55553 244556666666655 4455554333 2355666
Q ss_pred EEEEecC
Q 048450 82 ELTIHRC 88 (133)
Q Consensus 82 ~L~i~~c 88 (133)
+|+++++
T Consensus 92 ~L~L~~N 98 (175)
T PF14580_consen 92 ELYLSNN 98 (175)
T ss_dssp EEE-TTS
T ss_pred EEECcCC
Confidence 6666543
No 16
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=6.3e-06 Score=42.75 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcccc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELP 43 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 43 (133)
++|++|+++++ .+..+|+.++++++|+.|++++++ +.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46677777764 566666556677777777777653 55554
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.04 E-value=3e-06 Score=56.85 Aligned_cols=82 Identities=18% Similarity=0.334 Sum_probs=37.3
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccC-CCCCCccEEeecCCCCCCccCc--CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRT-TDIPRLTSLWISDCPNLKVLPD--YLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~--~~~~l 77 (133)
+.+|+.|+++++ .+..++ ++..++.|+.|+++++ .+++++. .+ ..+++|++|.+++ +.+..+-. .+..+
T Consensus 41 l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~----~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISE----GLDKNLPNLQELYLSN-NKISDLNELEPLSSL 112 (175)
T ss_dssp -TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CH----HHHHH-TT--EEE-TT-S---SCCCCGGGGG-
T ss_pred hcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCcccc----chHHhCCcCCEEECcC-CcCCChHHhHHHHcC
Confidence 357899999995 777776 6778999999999985 5877754 34 3589999999987 55665542 34578
Q ss_pred CCccEEEEecCch
Q 048450 78 TTLQELTIHRCPL 90 (133)
Q Consensus 78 ~~L~~L~i~~c~~ 90 (133)
++|+.|++.++|-
T Consensus 113 ~~L~~L~L~~NPv 125 (175)
T PF14580_consen 113 PKLRVLSLEGNPV 125 (175)
T ss_dssp TT--EEE-TT-GG
T ss_pred CCcceeeccCCcc
Confidence 8999999999883
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.90 E-value=1.9e-06 Score=69.62 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=52.6
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|+.|++++ +.+..||. .+.++..|+.|+++++ +++.+|. .+.+++.|++|...+ +.+..+| .+..++.
T Consensus 382 ~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~----tva~~~~L~tL~ahs-N~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPD----TVANLGRLHTLRAHS-NQLLSFP-ELAQLPQ 453 (1081)
T ss_pred ccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhH----HHHhhhhhHHHhhcC-Cceeech-hhhhcCc
Confidence 46788999988 47888884 4578888888888884 4777776 565666666665443 4455556 4445556
Q ss_pred ccEEEEe
Q 048450 80 LQELTIH 86 (133)
Q Consensus 80 L~~L~i~ 86 (133)
|+.+|++
T Consensus 454 L~~lDlS 460 (1081)
T KOG0618|consen 454 LKVLDLS 460 (1081)
T ss_pred ceEEecc
Confidence 6666665
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.88 E-value=3.2e-07 Score=71.89 Aligned_cols=77 Identities=26% Similarity=0.414 Sum_probs=35.1
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL 83 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 83 (133)
|..++++. +.+..+|+.+..+++|+.|+++++ +++.+.. ..+...+|++|.++. +.+..+|..+..++.|+.|
T Consensus 224 L~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~----~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 224 LRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNM----TEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhccccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeec----cHHHHhhhhhhcccc-chhccchHHHhhhHHHHHH
Confidence 33344443 234444444444555555555542 2433333 233333444444444 3455555555555555555
Q ss_pred EEec
Q 048450 84 TIHR 87 (133)
Q Consensus 84 ~i~~ 87 (133)
...+
T Consensus 297 y~n~ 300 (1255)
T KOG0444|consen 297 YANN 300 (1255)
T ss_pred Hhcc
Confidence 5444
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.88 E-value=5.5e-06 Score=67.78 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=69.5
Q ss_pred CccEEeecCCCC-CccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 3 RLSSLTVGSCNK-LKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~-l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
.|++|-+..... +..++. .+..++.|+.|++++|..+..+|. .++.+-+|++|++++ ..++.+|.+++++..|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSD-TGISHLPSGLGNLKKL 620 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccC-CCccccchHHHHHHhh
Confidence 466666665432 555553 367899999999999999999999 899999999999988 4588999999999999
Q ss_pred cEEEEecCchhH
Q 048450 81 QELTIHRCPLLE 92 (133)
Q Consensus 81 ~~L~i~~c~~l~ 92 (133)
.+|++..+..+.
T Consensus 621 ~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 621 IYLNLEVTGRLE 632 (889)
T ss_pred heeccccccccc
Confidence 999999776544
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.80 E-value=3.4e-06 Score=66.32 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=59.8
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
-|..|+++. +++...|..+....++-.|++++ .+++.||.. -+-+++-|-+|+++. +.+..+|+.+.++..|+.
T Consensus 104 dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~---lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 104 DLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPNS---LFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCch---HHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhh
Confidence 355667776 46667776666666777777777 357777762 334677788888877 668888888888888999
Q ss_pred EEEecCch
Q 048450 83 LTIHRCPL 90 (133)
Q Consensus 83 L~i~~c~~ 90 (133)
|.++++|.
T Consensus 178 L~Ls~NPL 185 (1255)
T KOG0444|consen 178 LKLSNNPL 185 (1255)
T ss_pred hhcCCChh
Confidence 99988874
No 22
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=5.9e-05 Score=39.06 Aligned_cols=40 Identities=25% Similarity=0.533 Sum_probs=26.4
Q ss_pred CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC
Q 048450 26 TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP 71 (133)
Q Consensus 26 ~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp 71 (133)
++|++|+++++ +++.+|. .++.+++|+.|++++++ +++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~----~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP----ELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG----HGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCc----hHhCCCCCCEEEecCCC-CCCCc
Confidence 46777888775 4777776 57778888888887753 55554
No 23
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=9.9e-05 Score=55.66 Aligned_cols=77 Identities=29% Similarity=0.596 Sum_probs=55.6
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeec--CCCCCCccCcCCCCC---
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWIS--DCPNLKVLPDYLLQT--- 77 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~--~c~~l~~lp~~~~~l--- 77 (133)
+|++|.+++|..++.+|..+. ++|+.|++.+|..+..+|. . |+.|.+. .|..++.+|.++..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~----s------Le~L~L~~n~~~~L~~LPssLk~L~I~ 140 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE----S------VRSLEIKGSATDSIKNVPNGLTSLSIN 140 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc----c------cceEEeCCCCCcccccCcchHhheecc
Confidence 699999999999998886442 5899999999988888887 4 3344443 234466666555333
Q ss_pred ---------------CCccEEEEecCchh
Q 048450 78 ---------------TTLQELTIHRCPLL 91 (133)
Q Consensus 78 ---------------~~L~~L~i~~c~~l 91 (133)
++|+.|++.+|..+
T Consensus 141 ~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 141 SYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred ccccccccccccccCCcccEEEecCCCcc
Confidence 37888999888754
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.58 E-value=6.4e-06 Score=61.57 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCccCCccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCch
Q 048450 14 KLKALPDYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPL 90 (133)
Q Consensus 14 ~l~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~ 90 (133)
.++.+|... .+++++..|++.+ .+++++|. ++..+.+|++|++++ +.+.++|..++++ .|+.|.+.|+|.
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pd----e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPD----EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHhhHHHHhcccccceeeeccc-cccccCch----HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence 344455333 4789999999998 45999999 788899999999987 6689999999999 999999999873
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.56 E-value=6.3e-06 Score=63.78 Aligned_cols=110 Identities=28% Similarity=0.402 Sum_probs=63.1
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL 83 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 83 (133)
|..|+|+. +.+..+|..+..++ |+.|-+++ .+++.+|+ .++....|..|+.+. +.+..+|..++.+.+|+.|
T Consensus 123 lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~----~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 123 LTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPE----EIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred HHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCc----ccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHH
Confidence 34445554 34555555555544 56665555 34666666 566666666666655 3466666666666666666
Q ss_pred EEecCchhHHhhcCCCCCCCcccCCCCceEEcCccceeeeeeeeccccc
Q 048450 84 TIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERRRCR 132 (133)
Q Consensus 84 ~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~l~s~~~~~c~ 132 (133)
.++.+..+. .++ .+..++-++++ ..|+++..+|...|+
T Consensus 195 ~vrRn~l~~------lp~---El~~LpLi~lD--fScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 195 NVRRNHLED------LPE---ELCSLPLIRLD--FSCNKISYLPVDFRK 232 (722)
T ss_pred HHhhhhhhh------CCH---HHhCCceeeee--cccCceeecchhhhh
Confidence 665433211 121 23355655555 448899999887664
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.42 E-value=3.6e-05 Score=55.49 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=5.1
Q ss_pred CCccEEEEecC
Q 048450 78 TTLQELTIHRC 88 (133)
Q Consensus 78 ~~L~~L~i~~c 88 (133)
++|++|++++|
T Consensus 193 ~~L~~L~L~~n 203 (319)
T cd00116 193 CNLEVLDLNNN 203 (319)
T ss_pred CCCCEEeccCC
Confidence 34444444444
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.34 E-value=0.00022 Score=55.88 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=20.6
Q ss_pred cEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccc
Q 048450 5 SSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPI 44 (133)
Q Consensus 5 ~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~ 44 (133)
++|+++++ ++.++. ..+.++++|+.+++.++ .++.+|.
T Consensus 81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~ 119 (873)
T KOG4194|consen 81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPR 119 (873)
T ss_pred eeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhccc
Confidence 34666663 444443 34456666666666553 3555554
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.31 E-value=8.6e-05 Score=58.08 Aligned_cols=114 Identities=17% Similarity=0.284 Sum_probs=67.4
Q ss_pred CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCC-----------------------CCccccccccccCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCD-----------------------LLEELPILEDRRTTDIPRLT 57 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~-----------------------~l~~lp~~~~~~~~~l~~L~ 57 (133)
.+|.+|.++. +.+..+|.. +..|+.|+.|++..+. .+..+.++ .+-.+..++
T Consensus 197 nsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme 272 (873)
T KOG4194|consen 197 NSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG---AFYGLEKME 272 (873)
T ss_pred chheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc---ceeeecccc
Confidence 3566677776 366667733 3446666666665431 12222221 333466777
Q ss_pred EEeecCCCCCCccCc-CCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccceeeeeeeecc
Q 048450 58 SLWISDCPNLKVLPD-YLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCCRITSFERR 129 (133)
Q Consensus 58 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~l~s~~~~ 129 (133)
+|++.. +.+..+.+ ++.++++|++|+++.+. +.....+.|..-+.+..|.+.. +.+++|+.+
T Consensus 273 ~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-----I~rih~d~WsftqkL~~LdLs~----N~i~~l~~~ 335 (873)
T KOG4194|consen 273 HLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-----IQRIHIDSWSFTQKLKELDLSS----NRITRLDEG 335 (873)
T ss_pred eeeccc-chhhhhhcccccccchhhhhccchhh-----hheeecchhhhcccceeEeccc----cccccCChh
Confidence 777766 44656553 46678888888888754 2223455677777777777774 356666554
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.23 E-value=0.00065 Score=55.09 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=19.0
Q ss_pred CccEEeecCCCCCCccCcCCCCCCCccEEEEecC
Q 048450 55 RLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRC 88 (133)
Q Consensus 55 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c 88 (133)
+|+.|++++ +.+..+|..+. ++|+.|++++|
T Consensus 263 ~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 263 ALQSLDLFH-NKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECcC-CccCccccccC--CCCcEEECCCC
Confidence 566676654 45666665543 36777777665
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.21 E-value=0.00042 Score=56.25 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=21.8
Q ss_pred CccEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450 55 RLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 55 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
+|+.|++++ +.++.+|..+..+++|+.|++++++
T Consensus 423 ~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 345555554 3456677666677777778777765
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00015 Score=58.17 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=37.9
Q ss_pred CCCccEEeecCCCCC-ccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC--cCCCCC
Q 048450 1 MPRLSSLTVGSCNKL-KALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l 77 (133)
||+|++|.+.+-... .++..-..++|+|..|||+++. ++.+ . +++++++|+.|.+.+..... -. ..+.++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~----GIS~LknLq~L~mrnLe~e~-~~~l~~LF~L 219 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-S----GISRLKNLQVLSMRNLEFES-YQDLIDLFNL 219 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-H----HHhccccHHHHhccCCCCCc-hhhHHHHhcc
Confidence 455555555552111 1112223456666666666643 5544 2 45556666655555433221 11 123355
Q ss_pred CCccEEEEec
Q 048450 78 TTLQELTIHR 87 (133)
Q Consensus 78 ~~L~~L~i~~ 87 (133)
++|+.|||+.
T Consensus 220 ~~L~vLDIS~ 229 (699)
T KOG3665|consen 220 KKLRVLDISR 229 (699)
T ss_pred cCCCeeeccc
Confidence 6666666654
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.06 E-value=9.2e-05 Score=60.23 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=66.2
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|+.|++++ .....+|..+..++.|+.|.++.+ .+.++|. ..+++.+|+++.+. |+.+..+|.++..+.+|+.
T Consensus 46 ~L~~l~lsn-n~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~----s~~~~~~l~~lnL~-~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 46 KLKSLDLSN-NQISSFPIQITLLSHLRQLNLSRN-YIRSVPS----SCSNMRNLQYLNLK-NNRLQSLPASISELKNLQY 118 (1081)
T ss_pred eeEEeeccc-cccccCCchhhhHHHHhhcccchh-hHhhCch----hhhhhhcchhheec-cchhhcCchhHHhhhcccc
Confidence 378899998 477788888888888999998874 4888887 78889999999885 4788899988888889999
Q ss_pred EEEecCc
Q 048450 83 LTIHRCP 89 (133)
Q Consensus 83 L~i~~c~ 89 (133)
|+++.+.
T Consensus 119 LdlS~N~ 125 (1081)
T KOG0618|consen 119 LDLSFNH 125 (1081)
T ss_pred cccchhc
Confidence 9888653
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.98 E-value=0.00015 Score=52.21 Aligned_cols=83 Identities=22% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCccEEeecCCCCCccCCccCCCC---CCccEEEeccCCCCc-----cccccccccCCCC-CCccEEeecCCCCCC----
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQT---TALQELSICSCDLLE-----ELPILEDRRTTDI-PRLTSLWISDCPNLK---- 68 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l---~~L~~L~l~~c~~l~-----~lp~~~~~~~~~l-~~L~~L~l~~c~~l~---- 68 (133)
++|+.|++++|......+..+..+ ++|+.|++++|. +. .+.. .+..+ ++|+.|++++|....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~----~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK----GLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH----HHHhCCCCceEEEcCCCcCCchHHH
Confidence 456666666654432233222222 336677776654 22 1112 23344 667777777655321
Q ss_pred ccCcCCCCCCCccEEEEecCc
Q 048450 69 VLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 69 ~lp~~~~~l~~L~~L~i~~c~ 89 (133)
.++..+..++.|+.|++++|.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 156 ALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCC
Confidence 233334445567777777664
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.90 E-value=0.00019 Score=53.64 Aligned_cols=79 Identities=27% Similarity=0.416 Sum_probs=39.4
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|+.|++++ ..+..+|..++.++.|+.|++.+++ +..+|. ..+..+.|+.|++++ +.+..+|..+.....|+.
T Consensus 141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~----~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPK----LLSNLSNLNNLDLSG-NKISDLPPEIELLSALEE 213 (394)
T ss_pred hcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhh----hhhhhhhhhheeccC-CccccCchhhhhhhhhhh
Confidence 455555555 3455554445555555555555533 555554 333455555555555 345555544333333555
Q ss_pred EEEecC
Q 048450 83 LTIHRC 88 (133)
Q Consensus 83 L~i~~c 88 (133)
+.+.+.
T Consensus 214 l~~~~N 219 (394)
T COG4886 214 LDLSNN 219 (394)
T ss_pred hhhcCC
Confidence 555444
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.82 E-value=0.0025 Score=51.81 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=43.3
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|+.|+++++ .+..+|..+. ++|+.|+++++ +++.+|. .+ .++|+.|++++|. +..+|..+. ++|+.
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~----~l--~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 200 QITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPA----TL--PDTIQEMELSINR-ITELPERLP--SALQS 266 (754)
T ss_pred CCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCCh----hh--hccccEEECcCCc-cCcCChhHh--CCCCE
Confidence 4556666653 5556664432 46677777664 3666665 33 2457777777643 556666543 36777
Q ss_pred EEEecC
Q 048450 83 LTIHRC 88 (133)
Q Consensus 83 L~i~~c 88 (133)
|+++++
T Consensus 267 L~Ls~N 272 (754)
T PRK15370 267 LDLFHN 272 (754)
T ss_pred EECcCC
Confidence 877754
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.76 E-value=0.00038 Score=52.11 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=40.7
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~ 78 (133)
+++|+.|+++++ ++..+- .++..+..++.|.+..+ +++.+..+ -+..++.|+.|++++. .++.+ |..+..+.
T Consensus 273 L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~---~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 273 LPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSSG---MFQGLSGLKTLSLYDN-QITTVAPGAFQTLF 346 (498)
T ss_pred cccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHHH---hhhccccceeeeecCC-eeEEEecccccccc
Confidence 345555555552 343333 33445555555555552 34444332 3445666666666663 33333 44455555
Q ss_pred CccEEEEec
Q 048450 79 TLQELTIHR 87 (133)
Q Consensus 79 ~L~~L~i~~ 87 (133)
+|..|.+-.
T Consensus 347 ~l~~l~l~~ 355 (498)
T KOG4237|consen 347 SLSTLNLLS 355 (498)
T ss_pred eeeeeehcc
Confidence 666666543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.69 E-value=0.00017 Score=52.48 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=44.6
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcccccc------------------ccccCCCCCCccEEeecC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPIL------------------EDRRTTDIPRLTSLWISD 63 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~------------------~~~~~~~l~~L~~L~l~~ 63 (133)
|.++.|+++.+ .+..+. .+..+++|+.|+++++. +.++... ...+++.+-+|..|++++
T Consensus 307 Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 307 PKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred cceeEEecccc-ceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence 56777777773 444443 36677778888887743 3333220 000234455556666655
Q ss_pred CCCCCccC--cCCCCCCCccEEEEecCc
Q 048450 64 CPNLKVLP--DYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 64 c~~l~~lp--~~~~~l~~L~~L~i~~c~ 89 (133)
+++..+- .++++++.|+.+.+.++|
T Consensus 384 -N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 384 -NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -cchhhHHHhcccccccHHHHHhhcCCC
Confidence 2333332 245566666666666554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.63 E-value=0.0011 Score=49.62 Aligned_cols=80 Identities=26% Similarity=0.422 Sum_probs=60.8
Q ss_pred CccEEeecCCCCCccCCccCCCCC-CccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTT-ALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
.+..|++.+ ..+..+|+..+.+. +|+.|++.+ ..+..+|. .++.++.|+.|++.++ .+..+|......+.|+
T Consensus 117 ~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~----~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 117 NLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPS----PLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred ceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhh----hhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 466777776 46777887666764 899999988 45888876 6788999999999884 4778887655677888
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
.|+++++.
T Consensus 190 ~L~ls~N~ 197 (394)
T COG4886 190 NLDLSGNK 197 (394)
T ss_pred heeccCCc
Confidence 88888764
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.57 E-value=0.0049 Score=50.29 Aligned_cols=9 Identities=44% Similarity=0.515 Sum_probs=4.3
Q ss_pred CccEEeecC
Q 048450 55 RLTSLWISD 63 (133)
Q Consensus 55 ~L~~L~l~~ 63 (133)
+|+.|++++
T Consensus 303 ~L~~LdLS~ 311 (788)
T PRK15387 303 GLQELSVSD 311 (788)
T ss_pred ccceeECCC
Confidence 444444444
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.56 E-value=0.00093 Score=50.12 Aligned_cols=92 Identities=9% Similarity=0.175 Sum_probs=67.4
Q ss_pred cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCchhHHhhcCCC
Q 048450 21 YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCPLLENRYREGK 99 (133)
Q Consensus 21 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~~~ 99 (133)
-++.|++|+.|+++++ +++.+.++ ++.....+++|.+.. +++..+.++ +.++..|+.|+++++..-. -.
T Consensus 269 cf~~L~~L~~lnlsnN-~i~~i~~~---aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~-----~~ 338 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN-KITRIEDG---AFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITT-----VA 338 (498)
T ss_pred HHhhcccceEeccCCC-ccchhhhh---hhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEE-----Ee
Confidence 4678999999999995 58877664 777889999999988 667777654 5688899999999876222 12
Q ss_pred CCCCcccCCCCceEEcCccceee
Q 048450 100 GEDWHKISHIPHIKWSITRWCCR 122 (133)
Q Consensus 100 ~~~~~~i~~l~~l~~~~~~~~~~ 122 (133)
+..|.....+..|.+..++|+++
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cccccccceeeeeehccCcccCc
Confidence 22345566666777777777654
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.45 E-value=0.0015 Score=52.63 Aligned_cols=84 Identities=20% Similarity=0.168 Sum_probs=58.3
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc--cC----cCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV--LP----DYL 74 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~--lp----~~~ 74 (133)
||+|..|+|+++ ++..+ .+++.|++|+.|.+.+.+ ++.-.. ...+.++++|+.|+|+.-..... +. +.-
T Consensus 172 FpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe-~e~~~~--l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 172 FPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLE-FESYQD--LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred cCccceeecCCC-CccCc-HHHhccccHHHHhccCCC-CCchhh--HHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 689999999995 77777 488999999999988765 332111 11466799999999987543322 11 111
Q ss_pred CCCCCccEEEEecCc
Q 048450 75 LQTTTLQELTIHRCP 89 (133)
Q Consensus 75 ~~l~~L~~L~i~~c~ 89 (133)
..++.|+.||.++-.
T Consensus 247 ~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTD 261 (699)
T ss_pred ccCccccEEecCCcc
Confidence 247889999988643
No 42
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.23 E-value=0.0023 Score=27.86 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=8.2
Q ss_pred ccEEeecCCCCCccCCcc
Q 048450 4 LSSLTVGSCNKLKALPDY 21 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~ 21 (133)
|++|++++| .++.+|.+
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 455555554 44444443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.23 E-value=0.0015 Score=47.67 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=50.9
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
.|+++++++ +.+.++.+.+.-+|.++.|+++++. +..+. .++.+++|+.|++++ +.+..+-.+-..+.+.+.
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-----nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNR-IRTVQ-----NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccceeEEeccccc-eeeeh-----hhhhcccceEeeccc-chhHhhhhhHhhhcCEee
Confidence 467788887 4677777777778888999888854 55553 477788899999887 445444333333444444
Q ss_pred EEEec
Q 048450 83 LTIHR 87 (133)
Q Consensus 83 L~i~~ 87 (133)
|.+.+
T Consensus 357 L~La~ 361 (490)
T KOG1259|consen 357 LKLAQ 361 (490)
T ss_pred eehhh
Confidence 44443
No 44
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00035 Score=47.81 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=46.2
Q ss_pred CCCCCCccEEEeccCCCCccccccccccCC-CCCCccEEeecCCCCCCccC-cCCCCCCCccEEEEecCchhH
Q 048450 22 LLQTTALQELSICSCDLLEELPILEDRRTT-DIPRLTSLWISDCPNLKVLP-DYLLQTTTLQELTIHRCPLLE 92 (133)
Q Consensus 22 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~-~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~i~~c~~l~ 92 (133)
+..+++++.|.+.+|..+....-+ .++ -.++|+.|+|++|+.+++-- ..+..+++|+.|.+.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLE---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHH---HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 456777888888888776544221 222 35788999999888887642 234567888888888876544
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.11 E-value=0.00024 Score=46.10 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=22.3
Q ss_pred EeecCCCCCccCCccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450 7 LTVGSCNKLKALPDYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63 (133)
Q Consensus 7 L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~ 63 (133)
.+|++ +.++.+|+.+ ..++.++.|++.++ .+..+|+ ++..++.|+.+.++.
T Consensus 58 i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPe----E~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 58 ISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPE----ELAAMPALRSLNLRF 109 (177)
T ss_pred Eeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchH----HHhhhHHhhhccccc
Confidence 34444 2344444333 22334444444442 2444454 444455555555544
No 46
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.97 E-value=0.0055 Score=24.97 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.8
Q ss_pred CccEEeecCC
Q 048450 3 RLSSLTVGSC 12 (133)
Q Consensus 3 ~L~~L~l~~~ 12 (133)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4555555554
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.88 E-value=0.0052 Score=46.53 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=42.0
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
.+|..|++.+ ..++.+...+..+++|++|+++++ .++.+. .+..++.|+.|++.+ +.+..+. ++..++.|+
T Consensus 95 ~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-----~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 95 KSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKLE-----GLSTLTLLKELNLSG-NLISDIS-GLESLKSLK 165 (414)
T ss_pred cceeeeeccc-cchhhcccchhhhhcchheecccc-cccccc-----chhhccchhhheecc-Ccchhcc-CCccchhhh
Confidence 4555666665 345544432556667777777663 355554 355566666666665 3344443 223344555
Q ss_pred EEEEecC
Q 048450 82 ELTIHRC 88 (133)
Q Consensus 82 ~L~i~~c 88 (133)
.+++.++
T Consensus 166 ~l~l~~n 172 (414)
T KOG0531|consen 166 LLDLSYN 172 (414)
T ss_pred cccCCcc
Confidence 5555544
No 48
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.00079 Score=46.11 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=45.7
Q ss_pred CCccEEeecCCCCCccCC-ccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALP-DYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNL 67 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l 67 (133)
+.++.|.+.+|..+..+- +.+ +-.++|+.|+|++|+++++-.-. .+..+++|+.|.+.+.+..
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhhHHHHhcCchhh
Confidence 456777888887776543 222 35689999999999998765432 6778899999988775543
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.22 E-value=0.0013 Score=42.74 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=58.1
Q ss_pred cEEeecCCCCCccCCcc---CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 5 SSLTVGSCNKLKALPDY---LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 5 ~~L~l~~~~~l~~lp~~---~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
..+++++|+ +..+++. +.....|...+++++ .++++|.+ ....++.++.+.+.. +.+..+|+.+..++.|+
T Consensus 30 h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~k---ft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 30 HFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-GFKKFPKK---FTIKFPTATTLNLAN-NEISDVPEELAAMPALR 103 (177)
T ss_pred hhcccccch-hhHHHHHHHHHhCCceEEEEecccc-hhhhCCHH---Hhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence 346777773 3334432 334456777888884 58888882 333456889999987 67999999999999999
Q ss_pred EEEEecCch
Q 048450 82 ELTIHRCPL 90 (133)
Q Consensus 82 ~L~i~~c~~ 90 (133)
.++++.++.
T Consensus 104 ~lNl~~N~l 112 (177)
T KOG4579|consen 104 SLNLRFNPL 112 (177)
T ss_pred hcccccCcc
Confidence 999998873
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.87 E-value=0.0074 Score=45.69 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=58.7
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
+++|++|++++ +.++.+. ++..++.|+.|++.++. +..+.. +..+++|+.+++.++. +..+... ...+.+
T Consensus 117 ~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-----~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~ 187 (414)
T KOG0531|consen 117 LVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGNL-ISDISG-----LESLKSLKLLDLSYNR-IVDIENDELSELIS 187 (414)
T ss_pred hhcchheeccc-ccccccc-chhhccchhhheeccCc-chhccC-----CccchhhhcccCCcch-hhhhhhhhhhhccc
Confidence 46899999998 5777776 66778889999999965 777764 6668899999998844 5555442 345667
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
++.+.+.++.
T Consensus 188 l~~l~l~~n~ 197 (414)
T KOG0531|consen 188 LEELDLGGNS 197 (414)
T ss_pred hHHHhccCCc
Confidence 7777776654
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.0071 Score=45.97 Aligned_cols=87 Identities=24% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCCccEEeecCCCCCccCCc--cCCCCCCccEEEeccCCCC--------ccccccc------c-------ccCCCCCCcc
Q 048450 1 MPRLSSLTVGSCNKLKALPD--YLLQTTALQELSICSCDLL--------EELPILE------D-------RRTTDIPRLT 57 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~c~~l--------~~lp~~~------~-------~~~~~l~~L~ 57 (133)
||+|+.|+++.+ .+..... .-..++.|+.|.++.|..- ..+|.-+ . .....+..|+
T Consensus 171 Lp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 171 LPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred cccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 577788888774 3432221 1134566777777666311 0011100 0 0111245677
Q ss_pred EEeecCCCCCCccC--cCCCCCCCccEEEEecCc
Q 048450 58 SLWISDCPNLKVLP--DYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 58 ~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~c~ 89 (133)
+|++++.+ +..++ ...+.++.|..|.++.|.
T Consensus 250 ~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 250 ELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred hccccCCc-ccccccccccccccchhhhhccccC
Confidence 77777744 44555 234566777777776654
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.014 Score=44.35 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc--CcC-----CCCCCCccEEEEecCc
Q 048450 25 TTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL--PDY-----LLQTTTLQELTIHRCP 89 (133)
Q Consensus 25 l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~-----~~~l~~L~~L~i~~c~ 89 (133)
+..|+.|++++++ +..++.. -..+.++.|..|.+..|. +.++ |.. ...+++|+.|++..++
T Consensus 245 ~~~L~~LdLs~N~-li~~~~~--~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 245 LQTLQELDLSNNN-LIDFDQG--YKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhHHhhccccCCc-ccccccc--cccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 3455666666543 3333310 034556666666665543 2222 211 1234566666666544
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.69 E-value=0.021 Score=40.52 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCCCCccEEEeccCC--CCccccccccccCCCCCCccEEeecCCCCCCccC--cCCCCCCCccEEEEecCc
Q 048450 23 LQTTALQELSICSCD--LLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 23 ~~l~~L~~L~l~~c~--~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~i~~c~ 89 (133)
..|++|+.|.++.+. -...++. -....++|+++.+++ +.++.+- ..+..+.+|..|++.+|+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCccccccccee----hhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence 356777777776652 1222322 222347777777776 3344321 112345566677777765
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.019 Score=41.98 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=53.9
Q ss_pred CCccEEeecCCCCCc---cCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccCcC---C
Q 048450 2 PRLSSLTVGSCNKLK---ALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLPDY---L 74 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~---~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~---~ 74 (133)
++|..|+|++|..-- ++..-....++|..|++++|..++. .-. .+..++.|++|.++.|..+ +|+. +
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~----~~~kf~~L~~lSlsRCY~i--~p~~~~~l 359 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFKFNYLQHLSLSRCYDI--IPETLLEL 359 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH----HHHhcchheeeehhhhcCC--ChHHeeee
Confidence 357778888765432 1222234678889999998876643 112 3556888999999988754 2332 3
Q ss_pred CCCCCccEEEEecCc
Q 048450 75 LQTTTLQELTIHRCP 89 (133)
Q Consensus 75 ~~l~~L~~L~i~~c~ 89 (133)
...++|.+|++.+|-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 466789999998874
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.43 E-value=0.13 Score=35.67 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=6.9
Q ss_pred CCCCccEEEEecC
Q 048450 76 QTTTLQELTIHRC 88 (133)
Q Consensus 76 ~l~~L~~L~i~~c 88 (133)
.+++|+.|++..-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 3455555555543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.37 E-value=0.0029 Score=51.06 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=41.7
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
+.|+.|+++.+ ++.... .+..++.|+.|+|+++ .+..+|.- +.... .|+.|.+++ +.++.+- ++.++.+|+
T Consensus 187 ~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l---~~~gc-~L~~L~lrn-N~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 187 PALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQL---SMVGC-KLQLLNLRN-NALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHhhhhccchh-hhhhhH-HHHhcccccccccccc-hhcccccc---chhhh-hheeeeecc-cHHHhhh-hHHhhhhhh
Confidence 45666777763 444333 4556677777777763 46555541 11111 266666655 3455443 345566666
Q ss_pred EEEEec
Q 048450 82 ELTIHR 87 (133)
Q Consensus 82 ~L~i~~ 87 (133)
.|++++
T Consensus 258 ~LDlsy 263 (1096)
T KOG1859|consen 258 GLDLSY 263 (1096)
T ss_pred ccchhH
Confidence 666654
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.25 E-value=0.099 Score=36.17 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=51.7
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCC-CCCccEEeecCCCCCCccC--cCCCCCCCc
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTD-IPRLTSLWISDCPNLKVLP--DYLLQTTTL 80 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~-l~~L~~L~l~~c~~l~~lp--~~~~~l~~L 80 (133)
...++++++ .+..++ .+..++.|..|.+.++ .+..+.. .+.. +++|+.|.+.+ +.+..+- ..+..++.|
T Consensus 44 ~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nN-rIt~I~p----~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 44 FDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNN-RITRIDP----DLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKL 115 (233)
T ss_pred cceeccccc-chhhcc-cCCCccccceEEecCC-cceeecc----chhhhccccceEEecC-cchhhhhhcchhccCCcc
Confidence 445667763 444444 4557888999999884 5878766 4544 56799998887 4454442 124456788
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
+.|.+-+++
T Consensus 116 ~~Ltll~Np 124 (233)
T KOG1644|consen 116 EYLTLLGNP 124 (233)
T ss_pred ceeeecCCc
Confidence 888887766
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.0095 Score=43.53 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=21.7
Q ss_pred CccEEeecCCCCCccCC--ccCCCCCCccEEEeccCC
Q 048450 3 RLSSLTVGSCNKLKALP--DYLLQTTALQELSICSCD 37 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~ 37 (133)
+|+.|+|+.|..+.+.. --+.+++.|..|+++.|.
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 56677777776666543 123556677777777664
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.0056 Score=44.26 Aligned_cols=16 Identities=31% Similarity=0.968 Sum_probs=8.4
Q ss_pred CCCCCCccEEeecCCC
Q 048450 50 TTDIPRLTSLWISDCP 65 (133)
Q Consensus 50 ~~~l~~L~~L~l~~c~ 65 (133)
+.++++|+.|++..+|
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 4455555555555444
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.49 E-value=0.14 Score=36.42 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=51.3
Q ss_pred CCCccEEeecCC--CCCccCCccCCCCCCccEEEeccCCC--CccccccccccCCCCCCccEEeecCCCCCCccCc----
Q 048450 1 MPRLSSLTVGSC--NKLKALPDYLLQTTALQELSICSCDL--LEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD---- 72 (133)
Q Consensus 1 l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~l~~c~~--l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~---- 72 (133)
||+|+.|.++.+ .-...++.-+...|+|++++++++.. +..++ .+..+.+|..|++.+|.... +-.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-----pl~~l~nL~~Ldl~n~~~~~-l~dyre~ 137 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-----PLKELENLKSLDLFNCSVTN-LDDYREK 137 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-----hhhhhcchhhhhcccCCccc-cccHHHH
Confidence 578888888876 33334554455679999999998541 23333 35567778888888876443 210
Q ss_pred CCCCCCCccEEEEecCc
Q 048450 73 YLLQTTTLQELTIHRCP 89 (133)
Q Consensus 73 ~~~~l~~L~~L~i~~c~ 89 (133)
.+.-+++|..|+-.+..
T Consensus 138 vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHHhhhhccccccccC
Confidence 12235667777665543
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.42 E-value=0.055 Score=41.11 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=4.7
Q ss_pred CccEEeecCCC
Q 048450 3 RLSSLTVGSCN 13 (133)
Q Consensus 3 ~L~~L~l~~~~ 13 (133)
+|+.|.++.|.
T Consensus 321 ~L~~l~l~~c~ 331 (483)
T KOG4341|consen 321 NLQVLELSGCQ 331 (483)
T ss_pred ceEEEeccccc
Confidence 34444444443
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.97 E-value=0.1 Score=39.59 Aligned_cols=39 Identities=33% Similarity=0.533 Sum_probs=21.6
Q ss_pred CCCccEEeecCCCCCCc--cCcCCCCCCCccEEEEecCchh
Q 048450 53 IPRLTSLWISDCPNLKV--LPDYLLQTTTLQELTIHRCPLL 91 (133)
Q Consensus 53 l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~i~~c~~l 91 (133)
.++|+.|.+.+|..++. +-......++|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45677776666664322 1112234556777777776654
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.87 E-value=0.24 Score=21.99 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=8.1
Q ss_pred CCccEEeecCCCCCccCC
Q 048450 2 PRLSSLTVGSCNKLKALP 19 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp 19 (133)
++|++|+++++ .+..+|
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 44555555542 444444
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.87 E-value=0.24 Score=21.99 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=8.1
Q ss_pred CCccEEeecCCCCCccCC
Q 048450 2 PRLSSLTVGSCNKLKALP 19 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp 19 (133)
++|++|+++++ .+..+|
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 44555555542 444444
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.86 E-value=3.1 Score=25.52 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=41.7
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|+.+.+.+ .+..++. .+...++|+.+.+.. .+..++.. .+...++++.+.+.. .+..++.. +...+.
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~---~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN---AFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT---TTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred CCCCEEEECC--CeeEeChhhcccccccccccccc--ccccccee---eeecccccccccccc--ccccccccccccccc
Confidence 3567777763 4556653 345666888888865 37677664 566676888888854 45556544 345778
Q ss_pred ccEEEEec
Q 048450 80 LQELTIHR 87 (133)
Q Consensus 80 L~~L~i~~ 87 (133)
++.+.+..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 88888753
No 66
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.12 E-value=0.29 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=6.2
Q ss_pred CccEEEeccCCCC
Q 048450 27 ALQELSICSCDLL 39 (133)
Q Consensus 27 ~L~~L~l~~c~~l 39 (133)
+|+.|++++|+++
T Consensus 3 ~L~~L~l~~C~~i 15 (26)
T smart00367 3 NLRELDLSGCTNI 15 (26)
T ss_pred CCCEeCCCCCCCc
Confidence 4444555554444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.84 E-value=0.0094 Score=43.16 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=51.5
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCCCCcc
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQTTTLQ 81 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~ 81 (133)
.+.|+.-+| .+.++. -...++.|+.|.++-+ ++.++. .+...+.|++|.++. +.+.++-+ .+.++++|+
T Consensus 21 vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvN-kIssL~-----pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 21 VKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVN-KISSLA-----PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hhhhcccCC-CccHHH-HHHhcccceeEEeecc-ccccch-----hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhh
Confidence 345555555 344443 2357888999988763 476664 366788899988876 44555432 356888999
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
.|.+..+|
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 99888776
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.72 E-value=5.7 Score=24.31 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=43.1
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|+.+.+.+ .+..++. .+.+.++++.+.+.+ .+..++.. .+...++|+.+.+.. .+..++.. +.+. .
T Consensus 35 ~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~---~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 35 TSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDN---AFSNCTNLKNIDIPS--NITEIGSSSFSNC-N 104 (129)
T ss_dssp TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TT---TTTT-TTECEEEETT--T-BEEHTTTTTT--T
T ss_pred cccccccccc--cccccceeeeecccccccccccc--cccccccc---cccccccccccccCc--cccEEchhhhcCC-C
Confidence 3677888765 3666664 346666899999965 46666663 566689999999864 36666654 3444 7
Q ss_pred ccEEEEec
Q 048450 80 LQELTIHR 87 (133)
Q Consensus 80 L~~L~i~~ 87 (133)
++.+.+.+
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 77777653
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=83.97 E-value=0.099 Score=42.70 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=49.0
Q ss_pred CCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450 14 KLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 14 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
.+..+...+.-++.|+.|+++.++ +.... .+..++.|++|+|++ +.++.+|..-.--..|+.|.++++-
T Consensus 175 ~L~~mD~SLqll~ale~LnLshNk-~~~v~-----~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 175 RLVLMDESLQLLPALESLNLSHNK-FTKVD-----NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred hHHhHHHHHHHHHHhhhhccchhh-hhhhH-----HHHhccccccccccc-chhccccccchhhhhheeeeecccH
Confidence 444444556668889999999854 66554 477789999999987 6688888532222368999998764
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.19 E-value=0.082 Score=40.06 Aligned_cols=91 Identities=26% Similarity=0.422 Sum_probs=51.3
Q ss_pred CCccEEeecCCCCCcc--CCccCCCCCCccEEEeccC-CCCccccccccccCCCCCCccEEeecCCCCCCccC-cCC-CC
Q 048450 2 PRLSSLTVGSCNKLKA--LPDYLLQTTALQELSICSC-DLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYL-LQ 76 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c-~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~-~~ 76 (133)
+.|+.|.+.+|..+.. +-......+.|+.|++.+| ......+...........+|+.|++..|..+...- ..+ ..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5667777777766665 3234456778888888763 22222111000022235678888888877544321 111 23
Q ss_pred CCCccEEEEecCchhH
Q 048450 77 TTTLQELTIHRCPLLE 92 (133)
Q Consensus 77 l~~L~~L~i~~c~~l~ 92 (133)
.++|+.|.+.+|..+.
T Consensus 268 c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLT 283 (482)
T ss_pred CCCcceEccCCCCccc
Confidence 5688888888787543
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.17 E-value=0.4 Score=36.67 Aligned_cols=92 Identities=18% Similarity=0.357 Sum_probs=54.9
Q ss_pred CCccEEeecCCCCCccC--CccCCCCCCccEEEeccCCCCccccccc-cccCCCCCCccEEeecCCCCCCcc-CcCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL--PDYLLQTTALQELSICSCDLLEELPILE-DRRTTDIPRLTSLWISDCPNLKVL-PDYLLQT 77 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l 77 (133)
+.|+.+++..|.....- -.-..+.+.|+.|.++.|..+....... ...-..+..|..+.+++|+.+..- -+.+...
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 35666666665443321 1122466788888888876554321000 002234677889999999876542 2334455
Q ss_pred CCccEEEEecCchhHH
Q 048450 78 TTLQELTIHRCPLLEN 93 (133)
Q Consensus 78 ~~L~~L~i~~c~~l~~ 93 (133)
++|+.+++.+|..+.+
T Consensus 426 ~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTK 441 (483)
T ss_pred cccceeeeechhhhhh
Confidence 6889999999987664
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=80.63 E-value=0.68 Score=34.58 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=21.4
Q ss_pred cCCCCCCccEEeecCCCCCC----ccCcCCCCCCCccEEEEecCc
Q 048450 49 RTTDIPRLTSLWISDCPNLK----VLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 49 ~~~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~i~~c~ 89 (133)
.+.+.++|+.|++.++..-. .+-..+..+++|+.+++.+|-
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 34456677777776633211 122223345566777777664
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.88 E-value=1.2 Score=32.87 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=9.8
Q ss_pred CCCCCccEEEeccCC
Q 048450 23 LQTTALQELSICSCD 37 (133)
Q Consensus 23 ~~l~~L~~L~l~~c~ 37 (133)
.++|.|+.|+++.++
T Consensus 94 e~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNS 108 (418)
T ss_pred hcCccceEeeccCCc
Confidence 467777777776543
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.79 E-value=1.9 Score=18.53 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=4.5
Q ss_pred CCccEEeecCC
Q 048450 2 PRLSSLTVGSC 12 (133)
Q Consensus 2 ~~L~~L~l~~~ 12 (133)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 44555555544
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.78 E-value=2.6 Score=19.10 Aligned_cols=16 Identities=44% Similarity=0.737 Sum_probs=7.7
Q ss_pred CccEEeecCCCCCccCC
Q 048450 3 RLSSLTVGSCNKLKALP 19 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp 19 (133)
+|+.|++++ +.+..+|
T Consensus 3 ~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSN-NQLTSLP 18 (26)
T ss_pred ccceeecCC-CccccCc
Confidence 455555555 2444444
No 76
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.11 E-value=9.2 Score=28.52 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=21.4
Q ss_pred CCCccEEeecCCCCC---ccCCccCCCCCCccEEEecc
Q 048450 1 MPRLSSLTVGSCNKL---KALPDYLLQTTALQELSICS 35 (133)
Q Consensus 1 l~~L~~L~l~~~~~l---~~lp~~~~~l~~L~~L~l~~ 35 (133)
||.|++|+|+.++.- +++| ..+.+|+.|.+.+
T Consensus 96 lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG 130 (418)
T ss_pred CccceEeeccCCcCCCccccCc---ccccceEEEEEcC
Confidence 688999999875432 2333 3456788887766
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=47.51 E-value=17 Score=16.31 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=4.8
Q ss_pred CCccEEEecc
Q 048450 26 TALQELSICS 35 (133)
Q Consensus 26 ~~L~~L~l~~ 35 (133)
++|+.|+++.
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 3445555544
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.92 E-value=17 Score=16.30 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=5.3
Q ss_pred CccEEeecCC
Q 048450 3 RLSSLTVGSC 12 (133)
Q Consensus 3 ~L~~L~l~~~ 12 (133)
+|++|+|+++
T Consensus 3 ~L~~LdL~~N 12 (28)
T smart00368 3 SLRELDLSNN 12 (28)
T ss_pred ccCEEECCCC
Confidence 4555555553
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=26.14 E-value=0.91 Score=32.43 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=26.9
Q ss_pred CCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450 25 TTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 25 l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
++.|..|+++. ..+..+|. ..+....+..++... +.....|...+..+.++.++..+.+
T Consensus 64 ~t~~~rl~~sk-nq~~~~~~----d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 64 LTRLVRLDLSK-NQIKFLPK----DAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHhccH-hhHhhChh----hHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhccCc
Confidence 44444455443 22444444 333333333444433 3344555555555555555554443
Done!