Query 048450
Match_columns 133
No_of_seqs 220 out of 1950
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.4 1.6E-12 5.6E-17 93.5 8.1 81 3-89 184-264 (328)
2 4fcg_A Uncharacterized protein 99.3 4.2E-12 1.4E-16 91.4 9.1 105 1-115 205-309 (328)
3 2v9t_B SLIT homolog 2 protein 99.2 2.7E-10 9.3E-15 77.6 10.7 108 2-120 56-165 (220)
4 3e6j_A Variable lymphocyte rec 99.2 2.3E-10 7.7E-15 78.4 9.6 108 2-120 64-172 (229)
5 2wfh_A SLIT homolog 2 protein 99.1 4E-10 1.4E-14 75.4 10.1 109 2-121 31-140 (193)
6 2v70_A SLIT-2, SLIT homolog 2 99.1 6.1E-10 2.1E-14 75.8 9.9 109 1-120 56-166 (220)
7 3rgz_A Protein brassinosteroid 99.1 9.6E-11 3.3E-15 92.7 5.2 84 2-89 632-715 (768)
8 4ezg_A Putative uncharacterize 99.1 4.3E-10 1.5E-14 75.2 7.0 82 1-89 65-147 (197)
9 2xwt_C Thyrotropin receptor; s 99.0 5.8E-10 2E-14 76.5 7.5 82 3-88 32-115 (239)
10 4ezg_A Putative uncharacterize 99.0 7.5E-10 2.6E-14 74.0 7.9 80 2-89 44-123 (197)
11 2o6s_A Variable lymphocyte rec 99.0 2.4E-09 8.2E-14 71.9 10.1 106 3-119 53-160 (208)
12 3rfs_A Internalin B, repeat mo 99.0 2E-09 6.9E-14 75.2 10.1 81 2-88 85-167 (272)
13 1ozn_A Reticulon 4 receptor; N 99.0 2.9E-09 1E-13 74.7 10.8 81 3-88 57-139 (285)
14 3m19_A Variable lymphocyte rec 99.0 3.1E-09 1.1E-13 73.4 10.6 63 51-119 128-191 (251)
15 1w8a_A SLIT protein; signaling 99.0 2.6E-09 8.7E-14 71.3 9.5 107 3-121 30-140 (192)
16 2o6q_A Variable lymphocyte rec 99.0 4.4E-09 1.5E-13 73.4 11.0 65 50-120 153-218 (270)
17 1p9a_G Platelet glycoprotein I 99.0 3.3E-09 1.1E-13 75.1 10.4 82 2-89 77-159 (290)
18 2ell_A Acidic leucine-rich nuc 99.0 4.2E-10 1.4E-14 73.3 5.3 81 2-89 24-106 (168)
19 4b8c_D Glucose-repressible alc 99.0 5.1E-10 1.7E-14 88.3 6.6 105 1-118 223-327 (727)
20 2r9u_A Variable lymphocyte rec 99.0 3.3E-09 1.1E-13 69.8 9.2 82 2-89 33-116 (174)
21 2o6r_A Variable lymphocyte rec 99.0 9.7E-09 3.3E-13 67.3 11.0 109 2-121 28-138 (177)
22 3v47_A TOLL-like receptor 5B a 99.0 3.2E-09 1.1E-13 78.7 9.6 109 2-121 299-409 (455)
23 2z63_A TOLL-like receptor 4, v 99.0 1.8E-09 6.3E-14 82.0 8.5 111 2-121 421-532 (570)
24 3rgz_A Protein brassinosteroid 99.0 1.1E-09 3.6E-14 86.7 7.3 84 2-89 442-525 (768)
25 1p9a_G Platelet glycoprotein I 98.9 9E-09 3.1E-13 72.8 10.6 109 1-121 99-209 (290)
26 3m19_A Variable lymphocyte rec 98.9 1.2E-08 4E-13 70.5 10.9 104 2-116 59-164 (251)
27 3zyj_A Leucine-rich repeat-con 98.9 6.4E-09 2.2E-13 77.2 10.1 110 1-121 159-293 (440)
28 2xwt_C Thyrotropin receptor; s 98.9 3.5E-09 1.2E-13 72.5 8.1 107 1-116 54-165 (239)
29 3g39_A Variable lymphocyte rec 98.9 7.1E-09 2.4E-13 67.9 9.2 82 2-89 30-113 (170)
30 1w8a_A SLIT protein; signaling 98.9 6.1E-09 2.1E-13 69.4 9.0 84 1-89 53-137 (192)
31 3o6n_A APL1; leucine-rich repe 98.9 1.8E-09 6E-14 78.9 6.8 104 2-119 248-351 (390)
32 3vq2_A TLR4, TOLL-like recepto 98.9 1.7E-09 5.8E-14 82.9 6.9 84 2-89 424-508 (606)
33 2z80_A TOLL-like receptor 2, v 98.9 4.2E-09 1.4E-13 76.0 8.3 83 1-89 75-160 (353)
34 2ell_A Acidic leucine-rich nuc 98.9 2.1E-09 7.2E-14 69.9 6.1 81 1-89 48-131 (168)
35 1ozn_A Reticulon 4 receptor; N 98.9 1.1E-08 3.9E-13 71.6 10.3 83 1-88 79-163 (285)
36 1ogq_A PGIP-2, polygalacturona 98.9 7.7E-10 2.6E-14 79.0 4.3 82 3-88 51-135 (313)
37 3e6j_A Variable lymphocyte rec 98.9 1.5E-08 5.1E-13 69.3 10.6 104 2-117 40-145 (229)
38 3rfs_A Internalin B, repeat mo 98.9 1.6E-08 5.5E-13 70.6 11.0 82 2-89 109-192 (272)
39 4b8c_D Glucose-repressible alc 98.9 1.1E-09 3.6E-14 86.5 5.3 82 1-89 246-327 (727)
40 3zyi_A Leucine-rich repeat-con 98.9 8.7E-09 3E-13 76.8 9.7 114 1-121 170-304 (452)
41 2o6q_A Variable lymphocyte rec 98.9 1.8E-08 6.3E-13 70.2 10.7 32 3-35 62-94 (270)
42 3oja_B Anopheles plasmodium-re 98.9 2.7E-09 9.3E-14 82.2 6.8 104 2-119 254-357 (597)
43 3zyj_A Leucine-rich repeat-con 98.9 8.9E-09 3E-13 76.5 9.2 83 1-89 135-218 (440)
44 2wfh_A SLIT homolog 2 protein 98.9 1.5E-08 5.2E-13 67.6 9.5 83 1-89 53-137 (193)
45 4eco_A Uncharacterized protein 98.9 1.9E-09 6.5E-14 83.7 5.6 84 1-89 205-316 (636)
46 2id5_A Lingo-1, leucine rich r 98.9 1.6E-08 5.4E-13 75.6 10.4 82 2-88 56-138 (477)
47 2je0_A Acidic leucine-rich nuc 98.9 3.9E-09 1.3E-13 67.3 6.1 105 2-117 17-123 (149)
48 4g8a_A TOLL-like receptor 4; l 98.9 8.2E-09 2.8E-13 78.9 8.9 80 3-88 53-134 (635)
49 2o6s_A Variable lymphocyte rec 98.9 3.4E-08 1.2E-12 66.2 11.0 105 2-117 28-134 (208)
50 3zyi_A Leucine-rich repeat-con 98.9 6.7E-09 2.3E-13 77.4 8.2 83 1-89 146-229 (452)
51 1ogq_A PGIP-2, polygalacturona 98.9 3.7E-09 1.3E-13 75.4 6.3 108 1-117 75-184 (313)
52 2z66_A Variable lymphocyte rec 98.9 7.5E-09 2.6E-13 73.2 7.7 82 2-88 126-209 (306)
53 3v47_A TOLL-like receptor 5B a 98.9 9.1E-09 3.1E-13 76.3 8.4 105 2-116 275-380 (455)
54 3o6n_A APL1; leucine-rich repe 98.9 2.5E-08 8.6E-13 72.8 10.6 83 1-89 68-152 (390)
55 3vq2_A TLR4, TOLL-like recepto 98.9 5.7E-09 1.9E-13 80.0 7.4 84 2-89 448-532 (606)
56 2v9t_B SLIT homolog 2 protein 98.9 3E-08 1E-12 67.4 10.2 104 2-117 32-138 (220)
57 2z66_A Variable lymphocyte rec 98.8 1.2E-08 4E-13 72.2 8.3 109 1-120 149-261 (306)
58 3j0a_A TOLL-like receptor 5; m 98.8 2E-08 6.9E-13 80.2 10.5 83 2-89 48-134 (844)
59 1dce_A Protein (RAB geranylger 98.8 6.1E-09 2.1E-13 80.2 7.1 102 3-118 442-544 (567)
60 2v70_A SLIT-2, SLIT homolog 2 98.8 2.5E-08 8.6E-13 67.8 9.4 83 1-89 80-164 (220)
61 2z80_A TOLL-like receptor 2, v 98.8 9.4E-09 3.2E-13 74.2 7.6 81 3-89 53-135 (353)
62 2o6r_A Variable lymphocyte rec 98.8 3E-08 1E-12 64.9 9.3 83 1-89 51-135 (177)
63 4fmz_A Internalin; leucine ric 98.8 2E-08 6.7E-13 72.1 8.9 78 2-89 66-143 (347)
64 4g8a_A TOLL-like receptor 4; l 98.8 1.3E-08 4.6E-13 77.7 8.3 110 2-121 469-581 (635)
65 2z81_A CD282 antigen, TOLL-lik 98.8 1.2E-08 4.2E-13 77.2 8.0 82 2-89 50-134 (549)
66 3g39_A Variable lymphocyte rec 98.8 3.9E-08 1.3E-12 64.3 9.4 104 4-120 11-115 (170)
67 4eco_A Uncharacterized protein 98.8 1.3E-08 4.5E-13 79.0 8.2 81 3-89 489-577 (636)
68 3oja_B Anopheles plasmodium-re 98.8 3.8E-08 1.3E-12 75.8 10.5 83 1-89 74-158 (597)
69 2r9u_A Variable lymphocyte rec 98.8 4.9E-08 1.7E-12 64.2 9.7 103 5-120 15-118 (174)
70 1dce_A Protein (RAB geranylger 98.8 8.7E-09 3E-13 79.3 6.7 81 1-89 462-544 (567)
71 1a9n_A U2A', U2A'; complex (nu 98.8 7.3E-09 2.5E-13 68.0 5.3 80 2-89 19-99 (176)
72 3j0a_A TOLL-like receptor 5; m 98.8 4.6E-08 1.6E-12 78.1 10.8 84 2-89 24-108 (844)
73 2z7x_B TOLL-like receptor 1, v 98.8 2.1E-08 7.1E-13 75.6 8.4 80 2-89 45-126 (520)
74 2z62_A TOLL-like receptor 4, v 98.8 5.1E-08 1.8E-12 68.0 9.8 80 3-88 29-110 (276)
75 2ifg_A High affinity nerve gro 98.8 2.5E-08 8.6E-13 71.7 8.2 83 2-89 31-114 (347)
76 4ecn_A Leucine-rich repeat pro 98.8 1.8E-08 6.3E-13 81.0 8.1 55 27-87 729-785 (876)
77 2je0_A Acidic leucine-rich nuc 98.8 5.2E-09 1.8E-13 66.7 4.0 81 1-89 41-124 (149)
78 3t6q_A CD180 antigen; protein- 98.8 5.7E-08 1.9E-12 74.5 10.4 80 3-88 34-115 (606)
79 2xot_A Amphoterin-induced prot 98.8 5.6E-08 1.9E-12 70.6 9.5 80 3-88 65-146 (361)
80 1wwl_A Monocyte differentiatio 98.8 1.3E-08 4.4E-13 72.4 6.0 83 1-89 94-184 (312)
81 2z62_A TOLL-like receptor 4, v 98.8 7.5E-08 2.6E-12 67.1 9.7 83 1-89 51-135 (276)
82 1a9n_A U2A', U2A'; complex (nu 98.7 2.3E-08 7.9E-13 65.5 6.6 80 2-89 42-124 (176)
83 1ziw_A TOLL-like receptor 3; i 98.7 4.1E-08 1.4E-12 76.2 8.8 80 3-88 50-131 (680)
84 2z7x_B TOLL-like receptor 1, v 98.7 5.4E-08 1.8E-12 73.4 9.3 61 54-121 421-482 (520)
85 2z81_A CD282 antigen, TOLL-lik 98.7 2.7E-08 9.2E-13 75.4 7.4 82 2-89 26-109 (549)
86 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 8.4E-08 2.9E-12 73.2 10.1 80 2-89 52-132 (562)
87 4ecn_A Leucine-rich repeat pro 98.7 5.3E-08 1.8E-12 78.3 8.9 81 3-89 729-817 (876)
88 2xot_A Amphoterin-induced prot 98.7 8.4E-08 2.9E-12 69.6 9.0 82 2-89 39-123 (361)
89 4ay9_X Follicle-stimulating ho 98.7 1.7E-07 5.7E-12 67.7 10.5 84 2-89 30-115 (350)
90 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 1.3E-07 4.4E-12 72.2 10.3 109 2-121 377-511 (562)
91 3t6q_A CD180 antigen; protein- 98.7 8.4E-08 2.9E-12 73.5 9.2 106 1-117 56-163 (606)
92 3e4g_A ATP synthase subunit S, 98.7 6.3E-09 2.2E-13 68.9 2.5 86 3-92 62-153 (176)
93 2ifg_A High affinity nerve gro 98.7 9.3E-08 3.2E-12 68.7 8.7 104 6-120 12-116 (347)
94 1h6u_A Internalin H; cell adhe 98.7 8.7E-08 3E-12 68.2 8.4 77 2-88 63-139 (308)
95 2z63_A TOLL-like receptor 4, v 98.7 5.1E-08 1.7E-12 74.0 7.5 83 1-89 444-529 (570)
96 2id5_A Lingo-1, leucine rich r 98.7 1.8E-07 6.3E-12 69.8 10.4 81 2-89 32-115 (477)
97 3o53_A Protein LRIM1, AGAP0063 98.7 4.5E-08 1.5E-12 69.8 6.6 80 2-89 144-225 (317)
98 1xku_A Decorin; proteoglycan, 98.7 1.6E-07 5.4E-12 67.1 9.2 81 3-89 193-274 (330)
99 4fmz_A Internalin; leucine ric 98.6 3E-08 1E-12 71.1 5.2 79 1-89 220-298 (347)
100 3o53_A Protein LRIM1, AGAP0063 98.6 5.7E-08 2E-12 69.2 6.6 82 1-89 119-202 (317)
101 2ft3_A Biglycan; proteoglycan, 98.6 2.4E-07 8.3E-12 66.2 9.8 78 2-88 54-133 (332)
102 3oja_A Leucine-rich immune mol 98.6 6.4E-08 2.2E-12 73.1 6.7 35 53-88 190-224 (487)
103 1h6t_A Internalin B; cell adhe 98.6 1.5E-07 5.2E-12 66.4 8.0 54 2-63 90-143 (291)
104 1xku_A Decorin; proteoglycan, 98.6 2.2E-07 7.4E-12 66.4 8.9 59 26-89 192-251 (330)
105 1o6v_A Internalin A; bacterial 98.6 2.2E-07 7.4E-12 69.5 9.0 79 1-89 67-145 (466)
106 2ft3_A Biglycan; proteoglycan, 98.6 3.4E-07 1.1E-11 65.5 9.5 80 1-89 77-158 (332)
107 4ay9_X Follicle-stimulating ho 98.6 5.5E-08 1.9E-12 70.3 5.4 81 4-91 156-236 (350)
108 1xeu_A Internalin C; cellular 98.6 2.5E-07 8.6E-12 64.5 8.6 33 2-36 63-95 (263)
109 2ast_B S-phase kinase-associat 98.6 5E-09 1.7E-13 74.8 -0.1 37 53-89 221-258 (336)
110 1xeu_A Internalin C; cellular 98.6 2.6E-07 8.8E-12 64.4 8.6 99 1-117 84-182 (263)
111 1h6t_A Internalin B; cell adhe 98.6 1.9E-07 6.4E-12 66.0 7.8 78 2-89 68-145 (291)
112 1h6u_A Internalin H; cell adhe 98.6 1.7E-07 5.9E-12 66.6 7.6 33 2-36 85-117 (308)
113 2ast_B S-phase kinase-associat 98.6 7.4E-09 2.5E-13 73.9 0.0 83 2-88 118-205 (336)
114 1m9s_A Internalin B; cell inva 98.6 2.5E-07 8.7E-12 71.7 8.4 77 2-88 65-141 (605)
115 1ziw_A TOLL-like receptor 3; i 98.5 4.5E-07 1.6E-11 70.4 9.5 84 1-89 72-156 (680)
116 3oja_A Leucine-rich immune mol 98.5 1.5E-07 5E-12 71.1 6.6 82 2-91 169-250 (487)
117 4glp_A Monocyte differentiatio 98.5 6.7E-07 2.3E-11 63.4 9.5 88 2-89 91-180 (310)
118 1m9s_A Internalin B; cell inva 98.5 3.5E-07 1.2E-11 70.9 8.3 55 1-63 86-140 (605)
119 3bz5_A Internalin-J, INLJ; leu 98.5 1.8E-06 6.2E-11 64.7 10.5 33 1-36 105-137 (457)
120 4glp_A Monocyte differentiatio 98.4 4.6E-07 1.6E-11 64.2 6.9 103 1-119 196-306 (310)
121 3bz5_A Internalin-J, INLJ; leu 98.4 2E-06 7E-11 64.4 10.6 37 50-89 208-244 (457)
122 1wwl_A Monocyte differentiatio 98.4 1.7E-07 6E-12 66.6 4.6 83 2-89 121-212 (312)
123 1o6v_A Internalin A; bacterial 98.4 1.6E-06 5.4E-11 64.8 8.1 12 52-63 307-318 (466)
124 3g06_A SSPH2 (leucine-rich rep 98.2 3.1E-06 1.1E-10 65.9 7.7 74 3-89 222-295 (622)
125 1jl5_A Outer protein YOPM; leu 98.2 5.7E-06 2E-10 61.9 8.6 76 2-89 131-206 (454)
126 1ds9_A Outer arm dynein; leuci 98.2 5.1E-09 1.7E-13 70.0 -7.5 78 2-88 48-125 (198)
127 3g06_A SSPH2 (leucine-rich rep 98.2 2.5E-05 8.5E-10 60.8 11.4 36 3-43 62-97 (622)
128 1ds9_A Outer arm dynein; leuci 98.1 1.5E-08 5.1E-13 67.6 -6.2 82 1-90 69-152 (198)
129 3e4g_A ATP synthase subunit S, 98.1 7.1E-07 2.4E-11 59.0 1.6 66 1-69 84-154 (176)
130 3cvr_A Invasion plasmid antige 98.1 6.6E-06 2.3E-10 63.4 6.7 32 57-89 210-241 (571)
131 1jl5_A Outer protein YOPM; leu 98.1 1.9E-05 6.4E-10 59.1 8.7 74 3-88 174-247 (454)
132 3cvr_A Invasion plasmid antige 98.0 1.8E-05 6.2E-10 61.0 8.0 70 3-88 121-190 (571)
133 2ca6_A RAN GTPase-activating p 98.0 7E-07 2.4E-11 65.0 -0.7 82 1-89 186-285 (386)
134 2ca6_A RAN GTPase-activating p 97.9 3E-06 1E-10 61.7 1.1 83 2-89 159-255 (386)
135 2p1m_B Transport inhibitor res 97.8 1.1E-06 3.7E-11 67.0 -1.7 85 1-89 65-167 (594)
136 3sb4_A Hypothetical leucine ri 97.8 0.00012 4.3E-09 52.1 9.0 78 2-87 226-306 (329)
137 3rw6_A Nuclear RNA export fact 97.7 1.5E-05 5.1E-10 55.9 2.1 59 24-89 168-231 (267)
138 3ogk_B Coronatine-insensitive 97.6 3.5E-05 1.2E-09 58.7 3.4 20 70-89 285-304 (592)
139 2p1m_B Transport inhibitor res 97.6 9E-06 3.1E-10 61.9 0.0 38 52-89 182-222 (594)
140 3ogk_B Coronatine-insensitive 97.5 0.00011 3.6E-09 56.0 4.8 39 49-88 288-328 (592)
141 1z7x_W Ribonuclease inhibitor; 97.5 1.5E-05 5.3E-10 58.9 -0.1 82 2-89 28-124 (461)
142 3sb4_A Hypothetical leucine ri 97.4 0.00098 3.3E-08 47.4 8.2 76 1-84 249-327 (329)
143 1z7x_W Ribonuclease inhibitor; 97.3 7.8E-06 2.7E-10 60.5 -3.0 84 3-89 314-409 (461)
144 3goz_A Leucine-rich repeat-con 97.2 1.7E-05 5.6E-10 57.4 -2.7 34 55-89 226-264 (362)
145 3goz_A Leucine-rich repeat-con 97.2 3E-05 1E-09 56.1 -1.5 33 3-36 23-61 (362)
146 2ra8_A Uncharacterized protein 96.9 0.0017 5.9E-08 47.3 5.7 14 76-89 250-263 (362)
147 2ra8_A Uncharacterized protein 96.9 0.00024 8.1E-09 51.8 1.0 32 2-34 193-227 (362)
148 3un9_A NLR family member X1; l 96.8 0.00014 4.8E-09 53.1 -1.1 59 25-89 154-222 (372)
149 3rw6_A Nuclear RNA export fact 96.5 0.0015 5.1E-08 45.8 2.7 78 1-85 169-258 (267)
150 1io0_A Tropomodulin; LRR prote 96.4 0.0011 3.6E-08 43.6 1.3 82 2-89 36-134 (185)
151 3un9_A NLR family member X1; l 96.2 0.00046 1.6E-08 50.4 -1.4 84 3-89 102-194 (372)
152 1io0_A Tropomodulin; LRR prote 96.0 0.0011 3.8E-08 43.5 -0.1 81 2-89 65-162 (185)
153 4fdw_A Leucine rich hypothetic 96.0 0.081 2.8E-06 38.8 9.9 12 50-61 222-233 (401)
154 3rfe_A Platelet glycoprotein I 95.1 0.046 1.6E-06 33.8 5.1 34 27-64 32-65 (130)
155 4fdw_A Leucine rich hypothetic 94.6 0.28 9.5E-06 36.0 9.0 14 49-62 175-188 (401)
156 4gt6_A Cell surface protein; l 94.1 0.34 1.2E-05 35.1 8.4 56 23-85 285-341 (394)
157 3rfe_A Platelet glycoprotein I 94.0 0.13 4.3E-06 31.8 5.2 52 30-89 12-66 (130)
158 4fs7_A Uncharacterized protein 93.8 0.36 1.2E-05 34.9 8.0 55 24-85 295-350 (394)
159 4gt6_A Cell surface protein; l 92.9 1.2 4E-05 32.2 9.6 61 22-89 307-368 (394)
160 4h09_A Hypothetical leucine ri 92.2 0.6 2.1E-05 33.4 7.3 76 3-86 241-318 (379)
161 4fs7_A Uncharacterized protein 91.1 0.41 1.4E-05 34.6 5.4 78 2-88 297-376 (394)
162 4h09_A Hypothetical leucine ri 89.6 3 0.0001 29.7 8.9 56 24-86 238-294 (379)
163 1pgv_A TMD-1, tropomodulin TMD 85.8 0.29 1E-05 32.5 1.4 85 2-88 41-136 (197)
164 2lz0_A Uncharacterized protein 31.8 74 0.0025 18.1 3.9 37 22-63 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.6e-12 Score=93.53 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=41.7
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|++|+++++ .+..+|..++.+++|+.|+++++. +..+|. .++.+++|++|++++|...+.+|..+..+++|+.
T Consensus 184 ~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 184 NLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGP----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp TCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG----GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCch----hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 4444444443 333444444455555555555533 444444 4555555555555555555555555555555555
Q ss_pred EEEecCc
Q 048450 83 LTIHRCP 89 (133)
Q Consensus 83 L~i~~c~ 89 (133)
|++++|.
T Consensus 258 L~L~~n~ 264 (328)
T 4fcg_A 258 LILKDCS 264 (328)
T ss_dssp EECTTCT
T ss_pred EECCCCC
Confidence 5555554
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=4.2e-12 Score=91.41 Aligned_cols=105 Identities=25% Similarity=0.311 Sum_probs=87.6
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++|++|+++++ .+..+|..++.+++|+.|++++|...+.+|. .++.+++|++|++++|+..+.+|..+..+++|
T Consensus 205 l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 205 LQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP----IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp CTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC----CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred CCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH----HhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 478999999996 6677888899999999999999998899998 89999999999999999999999999999999
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEc
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWS 115 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~ 115 (133)
++|++++|+.+. ..+..+..+..+..+.+.
T Consensus 280 ~~L~L~~n~~~~-----~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 280 EKLDLRGCVNLS-----RLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCC-----CCCGGGGGSCTTCEEECC
T ss_pred CEEeCCCCCchh-----hccHHHhhccCceEEeCC
Confidence 999999988655 233334445555554444
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.18 E-value=2.7e-10 Score=77.60 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=54.7
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~ 79 (133)
++|++|+++++ .+..+ |..+..+++|++|+++++. +..+|.. .+..+++|++|+++++. +..+ |..+..+++
T Consensus 56 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 56 KKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKS---LFEGLFSLQLLLLNANK-INCLRVDAFQDLHN 129 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHh---HccCCCCCCEEECCCCC-CCEeCHHHcCCCCC
Confidence 34555555553 33333 3444555555555555532 4455542 24455666666665533 3333 334555566
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 120 (133)
|+.|+++++.- . ......+..+.++..+.+.++++.
T Consensus 130 L~~L~L~~N~l-~----~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 130 LNLLSLYDNKL-Q----TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCC-S----CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcC-C----EECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666665541 1 011122445666777777776663
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.16 E-value=2.3e-10 Score=78.40 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=60.3
Q ss_pred CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++|++|+++++ .+..+|.. +..+++|+.|+++++ .+..++.. .+..+++|++|++++ +.+..+|..+..+++|
T Consensus 64 ~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 64 INLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA---VFDRLVHLKELFMCC-NKLTELPRGIERLTHL 137 (229)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS-SCCCSCCTTGGGCTTC
T ss_pred cCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChh---HhCcchhhCeEeccC-CcccccCcccccCCCC
Confidence 45555555553 34455532 355666666666664 35555442 345566666666665 3355666666666677
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 120 (133)
+.|+++++. +.. .....+..+.++..+.+.++++.
T Consensus 138 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 138 THLALDQNQ-LKS----IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SEEECCSSC-CCC----CCTTTTTTCTTCCEEECTTSCBC
T ss_pred CEEECCCCc-CCc----cCHHHHhCCCCCCEEEeeCCCcc
Confidence 777776653 221 11123455667777777776653
No 5
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=4e-10 Score=75.38 Aligned_cols=109 Identities=15% Similarity=0.262 Sum_probs=81.5
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L 80 (133)
++|++|+++++ .+..+|..+..+++|+.|+++++. +..++.. .+..+++|++|+++++ .+..++. .+..+++|
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~---~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQ---SFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHh---HccCCCCCCEEECCCC-ccCEeCHHHhCCCCCC
Confidence 46889999985 677888888889999999999864 7777653 6888999999999884 4667664 57788999
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
+.|+++++. +.. .....+..+.++..+.+.++++.+
T Consensus 105 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 105 RLLSLHGND-ISV----VPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CEEECCSSC-CCB----CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCC-CCe----eChhhhhcCccccEEEeCCCCeec
Confidence 999999875 221 112235567778888888877643
No 6
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=6.1e-10 Score=75.83 Aligned_cols=109 Identities=10% Similarity=0.230 Sum_probs=67.4
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~ 78 (133)
+++|++|+++++ .+..+++ .+..+++|+.|+++++. +..++.+ .++.+++|++|+++++. +..+ |..+..++
T Consensus 56 l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 129 (220)
T 2v70_A 56 LPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHK---MFKGLESLKTLMLRSNR-ITCVGNDSFIGLS 129 (220)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGG---GGTTCSSCCEEECTTSC-CCCBCTTSSTTCT
T ss_pred CCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHh---HhcCCcCCCEEECCCCc-CCeECHhHcCCCc
Confidence 356777777764 4555553 46677777777777754 5555542 46677777777777744 4444 55666777
Q ss_pred CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450 79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120 (133)
Q Consensus 79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 120 (133)
+|+.|+++++. +.. ..+..+..+.++..+.+.++++.
T Consensus 130 ~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 130 SVRLLSLYDNQ-ITT----VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCSEEECTTSC-CCC----BCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCEEECCCCc-CCE----ECHHHhcCCCCCCEEEecCcCCc
Confidence 77888777654 111 11233455667777777776654
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.08 E-value=9.6e-11 Score=92.66 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|+.|+++++...+.+|..++.+++|+.|+++++...+.+|. .++.+++|+.|+++++...+.+|..+..+++|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 5789999999877778999999999999999999876678998 899999999999999877778999999999999
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
+|++++++
T Consensus 708 ~L~ls~N~ 715 (768)
T 3rgz_A 708 EIDLSNNN 715 (768)
T ss_dssp EEECCSSE
T ss_pred EEECcCCc
Confidence 99999886
No 8
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=4.3e-10 Score=75.20 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=59.6
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|++|++++| .+..++ .+..+++|++|+++++. +.. .+. .++.+++|++|+++++......|..+..+++
T Consensus 65 l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 137 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPK 137 (197)
T ss_dssp CTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred CCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence 467888888887 555554 67778888888888865 443 455 6777888888888876544445666677788
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|++++|.
T Consensus 138 L~~L~L~~n~ 147 (197)
T 4ezg_A 138 VNSIDLSYNG 147 (197)
T ss_dssp CCEEECCSCT
T ss_pred CCEEEccCCC
Confidence 8888888776
No 9
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.05 E-value=5.8e-10 Score=76.49 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=39.3
Q ss_pred CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCc
Q 048450 3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L 80 (133)
+|++|+++++ .+..+|. .+..+++|+.|+++++..++.++.. .++.+++|++|++++|+.++.+|. .+..+++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~---~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH---SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTT---TEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHh---HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 3555555553 3444443 3445555555555554334444432 344455555555554444444442 23344455
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|+++++
T Consensus 108 ~~L~l~~n 115 (239)
T 2xwt_C 108 KFLGIFNT 115 (239)
T ss_dssp CEEEEEEE
T ss_pred CEEeCCCC
Confidence 55555443
No 10
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.05 E-value=7.5e-10 Score=73.97 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++ .+..+| ++..+++|+.|++++| .+..++ .+..+++|++|+++++..-...|..+..+++|+
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 56888888885 666777 6788888999999887 466654 477788899999988654444677788888899
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
+|+++++.
T Consensus 116 ~L~Ls~n~ 123 (197)
T 4ezg_A 116 LLDISHSA 123 (197)
T ss_dssp EEECCSSB
T ss_pred EEEecCCc
Confidence 99888875
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.04 E-value=2.4e-09 Score=71.92 Aligned_cols=106 Identities=24% Similarity=0.358 Sum_probs=44.8
Q ss_pred CccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450 3 RLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L 80 (133)
+|++|+++++ .+..+|.. +..+++|++|+++++. +..+|.. .++.+++|++|+++++ .++.+|.. +..+++|
T Consensus 53 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 53 SLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNG---VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHh---HhcCccCCCEEEcCCC-cCcccCHhHhccCCcC
Confidence 3444444442 33333322 2344444444444432 3333331 2344555555555442 23344332 3445555
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW 119 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 119 (133)
++|+++++. +. ......+..+.++..+.+.++.+
T Consensus 127 ~~L~l~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 127 KDLRLYQNQ-LK----SVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSCCB
T ss_pred CEEECCCCc-cc----eeCHHHhccCCCccEEEecCCCe
Confidence 555555442 11 01111234455556666655443
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.04 E-value=2e-09 Score=75.25 Aligned_cols=81 Identities=27% Similarity=0.333 Sum_probs=39.1
Q ss_pred CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..++.. ++.+++|++|+++++. +..++.. .++.+++|++|+++++ .++.+|.. +..+++
T Consensus 85 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 85 TNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDG---VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTN 158 (272)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHH---HhccCCCCCEEECCCC-ccCccCHHHhccCcc
Confidence 45666666664 34444432 3555666666665543 4444431 2444555555555543 23333332 234445
Q ss_pred ccEEEEecC
Q 048450 80 LQELTIHRC 88 (133)
Q Consensus 80 L~~L~i~~c 88 (133)
|+.|++++|
T Consensus 159 L~~L~l~~n 167 (272)
T 3rfs_A 159 LTELDLSYN 167 (272)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555444
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.03 E-value=2.9e-09 Score=74.67 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=35.0
Q ss_pred CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCCc
Q 048450 3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L 80 (133)
+|++|+++++ .+..+ |..+..+++|+.|+++++..++.++.. .+..+++|++|+++++. +..+ |..+..+++|
T Consensus 57 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 57 NLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAAL 131 (285)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT---TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred CCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHH---HhcCCcCCCEEECCCCc-CCEECHhHhhCCcCC
Confidence 4444444443 23333 233444555555555544334444221 34444555555554433 2222 3334444455
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|+++++
T Consensus 132 ~~L~l~~n 139 (285)
T 1ozn_A 132 QYLYLQDN 139 (285)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555443
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.03 E-value=3.1e-09 Score=73.40 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=29.2
Q ss_pred CCCCCccEEeecCCCCCCccCc-CCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450 51 TDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW 119 (133)
Q Consensus 51 ~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 119 (133)
+.+++|++|+++++ .++.+|. .+..+++|++|+++++. +. ......+..+.++..+.+.++.+
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 128 DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQ----SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CC----ccCHHHHhCCCCCCEEEeeCCce
Confidence 44455555555443 3444443 24445555555555443 11 01112234455666666666555
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=2.6e-09 Score=71.25 Aligned_cols=107 Identities=11% Similarity=0.210 Sum_probs=74.6
Q ss_pred CccEEeecCCCCCccCCcc--CCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCc-CCCCCC
Q 048450 3 RLSSLTVGSCNKLKALPDY--LLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTT 78 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~ 78 (133)
++++|+++++ .+..++.. ++.+++|+.|+++++. +..+ |. .++.+++|++|+++++. ++.++. .+..++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN----AFEGASHIQELQLGENK-IKEISNKMFLGLH 102 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT----TTTTCTTCCEEECCSCC-CCEECSSSSTTCT
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHh----HcCCcccCCEEECCCCc-CCccCHHHhcCCC
Confidence 6788888885 66666643 6788889999998865 6555 45 78888889999988844 666654 467788
Q ss_pred CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
+|++|+++++..-. ..+..+..+.++..+.+.++.+.+
T Consensus 103 ~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 103 QLKTLNLYDNQISC-----VMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCCCCccC
Confidence 88999888875211 112334566677777777766543
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.01 E-value=4.4e-09 Score=73.39 Aligned_cols=65 Identities=15% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450 50 TTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120 (133)
Q Consensus 50 ~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 120 (133)
++.+++|++|+++++ .+..+|.. +..+++|++|+++++. +.. .....+..+.++..+.+.++++.
T Consensus 153 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 153 FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKR----VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCc----CCHHHhccccCCCEEEecCCCee
Confidence 344555555555443 23334332 4445555555555543 110 11112345566667777776653
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.01 E-value=3.3e-09 Score=75.07 Aligned_cols=82 Identities=27% Similarity=0.371 Sum_probs=46.0
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L 80 (133)
++|++|+++++ .+..+|..+..+++|+.|+++++. ++.+|.+ .+..+++|++|+++++ .++.+|.. +..+++|
T Consensus 77 ~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG---ALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL 150 (290)
T ss_dssp TTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSS---TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred CcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHH---HHcCCCCCCEEECCCC-CCCccChhhcccccCC
Confidence 45666666653 455566555666666666666643 5555532 4555666666666653 34455443 3455566
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
+.|+++++.
T Consensus 151 ~~L~L~~N~ 159 (290)
T 1p9a_G 151 EKLSLANNN 159 (290)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 666665543
No 18
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=4.2e-10 Score=73.27 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=48.5
Q ss_pred CCccEEeecCCCCCc--cCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLK--ALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
++|++|++++|. +. .+|..+..+++|+.|++++|. +..+ . .++.+++|++|+++++.....+|..+..+++
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-S----NLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-S----SCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-h----hhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 457777777753 44 666555666777777777654 5555 3 5666666667766664432224444444566
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|+.|+++++.
T Consensus 97 L~~L~Ls~N~ 106 (168)
T 2ell_A 97 LTHLNLSGNK 106 (168)
T ss_dssp CCEEECBSSS
T ss_pred CCEEeccCCc
Confidence 6666666553
No 19
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=5.1e-10 Score=88.32 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=78.9
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++|+.|+|+++ .+..+|..+..+++|+.|+++++. +..+|. .++.+++|++|+++++. +..+|..+..+++|
T Consensus 223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~----~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNS-LTELPA----EIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL 295 (727)
T ss_dssp CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCG----GGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCc-CcccCh----hhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence 357888888885 566788777788889999998864 668887 78888889999998854 66888888888889
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcc
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITR 118 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~ 118 (133)
++|+++++. +. ..+..+..+.++..|.+.++.
T Consensus 296 ~~L~L~~N~-l~-----~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 296 KYFYFFDNM-VT-----TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SEEECCSSC-CC-----CCCSSTTSCTTCCCEECTTSC
T ss_pred CEEECCCCC-CC-----ccChhhhcCCCccEEeCCCCc
Confidence 999888874 22 223335566777777776653
No 20
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=3.3e-09 Score=69.80 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=56.8
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..+ |..++.+++|+.|+++++ ++..+|.. .++.+++|++|++++ +.++.+|.. +..+++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~---~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTG---VFDKLTQLTQLDLND-NHLKSIPRGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChh---HhCCcchhhEEECCC-CccceeCHHHhccccC
Confidence 45777888774 45555 345677788888888775 47777762 346778888888877 456677664 667778
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|++++++
T Consensus 107 L~~L~L~~N~ 116 (174)
T 2r9u_A 107 LTHIYLYNNP 116 (174)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 8888887664
No 21
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=9.7e-09 Score=67.30 Aligned_cols=109 Identities=24% Similarity=0.391 Sum_probs=79.3
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..+|. .++.+++|++|+++++ .+..+|.. .++.+++|++|+++++ .++.+|.. +..+++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDG---VFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChh---HccCCCccCEEECCCC-CccccCHHHhhCCcc
Confidence 57889999985 5667774 3578899999999986 47777762 4678999999999885 47777654 578889
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
|+.|+++++. +.. .....+..+.++..+.+.++.+.+
T Consensus 102 L~~L~l~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 102 LKELALDTNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECcCCc-ceE----eCHHHhcCCcccCEEEecCCCeec
Confidence 9999999875 321 112224556778888888776543
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.98 E-value=3.2e-09 Score=78.72 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=54.6
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~ 79 (133)
++|++|+++++. +..+ |..+..+++|+.|+++++. +..++.. .++.+++|++|+++++. +..+ |..+..+++
T Consensus 299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDSR---MFENLDKLEVLDLSYNH-IRALGDQSFLGLPN 372 (455)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGG---GGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcChh---HhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence 344555555432 2222 3344555555555555543 3433221 45556666666666644 3333 455566666
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
|++|+++++. +.. .....+..++++..+.+.++++.+
T Consensus 373 L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 373 LKELALDTNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccEEECCCCc-ccc----CCHhHhccCCcccEEEccCCCccc
Confidence 6666666654 211 111123456666777777665543
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.98 E-value=1.8e-09 Score=81.96 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=68.5
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCC-ccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLL-EELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++|++|++++|......|..+..+++|+.|++++|... ..+|. .++.+++|++|++++|......|..+..+++|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh----hhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 45666666665433334455666777777777776532 24666 67777788888887765333336667777788
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
++|++++|. +.. .....+..+.++..+.+.++++.+
T Consensus 497 ~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 497 QVLNMASNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEeCCCCc-CCC----CCHHHhhcccCCcEEEecCCcccC
Confidence 888887764 221 112234556677777777766543
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.97 E-value=1.1e-09 Score=86.73 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|+.|+++++...+.+|..++.+++|+.|++++|...+.+|. .++.+++|++|++++|...+.+|.+++.+++|+
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 3444555554433334444445555555555555443334444 455555566666655554445555555555666
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
.|++++|.
T Consensus 518 ~L~L~~N~ 525 (768)
T 3rgz_A 518 ILKLSNNS 525 (768)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66665554
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.95 E-value=9e-09 Score=72.80 Aligned_cols=109 Identities=28% Similarity=0.361 Sum_probs=79.3
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCC
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~ 78 (133)
+++|++|+++++ .+..+| ..+..+++|+.|+++++. +..+|.+ .+..+++|+.|+++++ .++.+|... ..++
T Consensus 99 l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 99 LPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPG---LLTPTPKLEKLSLANN-NLTELPAGLLNGLE 172 (290)
T ss_dssp CTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECTTS-CCSCCCTTTTTTCT
T ss_pred CCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChh---hcccccCCCEEECCCC-cCCccCHHHhcCcC
Confidence 468899999985 677777 457889999999999864 7777763 5678899999999884 577888654 6788
Q ss_pred CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
+|+.|+++++. +. ..+..+.....+..+.+.+++|.+
T Consensus 173 ~L~~L~L~~N~-l~-----~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 173 NLDTLLLQENS-LY-----TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCCEEECCSSC-CC-----CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCEEECCCCc-CC-----ccChhhcccccCCeEEeCCCCccC
Confidence 99999998875 22 122223344567777777777644
No 26
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=1.2e-08 Score=70.48 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=54.1
Q ss_pred CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..++ ..+..+++|+.|+++++. +..+|.. .++.+++|++|+++++ .++.+|.. +..+++
T Consensus 59 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 59 TKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLG---VFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred ccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChh---HhcccCCCCEEEcCCC-cCCCcChhHhccCCc
Confidence 45555555553 333333 234556666666666543 4444432 4456666666666663 35555544 355667
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI 116 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~ 116 (133)
|++|+++++. +.. .....+..+.++..|.+.+
T Consensus 133 L~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 133 LKELRLNTNQ-LQS----IPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCS
T ss_pred ccEEECcCCc-CCc----cCHHHcCcCcCCCEEECCC
Confidence 7777776653 221 1111234455566665554
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.94 E-value=6.4e-09 Score=77.24 Aligned_cols=110 Identities=21% Similarity=0.396 Sum_probs=56.1
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCC--------------
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCP-------------- 65 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~-------------- 65 (133)
+++|++|+++++..+..++. .+..+++|+.|+++++. +..+|. +..+++|++|+++++.
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-----LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-----CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-----cCCCcccCEEECCCCccCccChhhhccCcc
Confidence 35667777776666666653 34556666666666542 444442 4444455555554432
Q ss_pred ---------CCCcc-CcCCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 66 ---------NLKVL-PDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 66 ---------~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
.+..+ +..+..+++|+.|+++++. +. ......+..+.++..|.+.++++.|
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LT----LLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CC----CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CC----ccChhHhccccCCCEEEcCCCCccC
Confidence 12222 2234444555555555443 11 1112223456677777777776643
No 28
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.94 E-value=3.5e-09 Score=72.53 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=80.7
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|++|+++++..++.++. .+..+++|+.|++++|..++.++.. .+..+++|++|+++++. ++.+|. +..+++
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~---~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD---ALKELPLLKFLGIFNTG-LKMFPD-LTKVYS 128 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT---SEECCTTCCEEEEEEEC-CCSCCC-CTTCCB
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH---HhCCCCCCCEEeCCCCC-Cccccc-cccccc
Confidence 47899999999755888885 5688999999999986678888753 67789999999999865 777886 777778
Q ss_pred cc---EEEEecCchhHHhhcCCCCCCCcccCCCC-ceEEcC
Q 048450 80 LQ---ELTIHRCPLLENRYREGKGEDWHKISHIP-HIKWSI 116 (133)
Q Consensus 80 L~---~L~i~~c~~l~~~~~~~~~~~~~~i~~l~-~l~~~~ 116 (133)
|+ .|++++++.+.... ...+..+.++. .+.+.+
T Consensus 129 L~~L~~L~l~~N~~l~~i~----~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIP----VNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp CCSEEEEEEESCTTCCEEC----TTTTTTTBSSEEEEECCS
T ss_pred cccccEEECCCCcchhhcC----cccccchhcceeEEEcCC
Confidence 87 99999985444221 12244566666 666654
No 29
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=7.1e-09 Score=67.89 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=50.3
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..+ |..+..+++|+.|+++++ ++..+|.+ .++.+++|++|++++ +.++.+|.. +..+++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG---VFDKLTQLTQLSLND-NQLKSIPRGAFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChh---hccCCCCCCEEECCC-CccCEeCHHHhcCCCC
Confidence 35666777664 45555 344566777777777764 36666652 345677777777766 345566543 556667
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|+.|++++++
T Consensus 104 L~~L~L~~N~ 113 (170)
T 3g39_A 104 LTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 7777776653
No 30
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=6.1e-09 Score=69.40 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=68.4
Q ss_pred CCCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|++|+++++ .+..+ |..+..+++|+.|+++++. +..++.. .++.+++|++|+++++......|..+..+++
T Consensus 53 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 53 LPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNK---MFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSS---SSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred CCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc-CCccCHH---HhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 478999999996 55555 6778999999999999965 7777663 5888999999999996544444777889999
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|++++++
T Consensus 128 L~~L~L~~N~ 137 (192)
T 1w8a_A 128 LTSLNLASNP 137 (192)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEeCCCC
Confidence 9999998775
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.94 E-value=1.8e-09 Score=78.91 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=46.3
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++......|..+..+++|+.|+++++. +..+|. ..+.+++|++|+++++ .+..+|..+..+++|+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL----YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEEC----SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCc----ccCCCCCCCEEECCCC-cceecCccccccCcCC
Confidence 344444444432222223344445555555555432 444444 3444555555555543 2444444444444555
Q ss_pred EEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450 82 ELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW 119 (133)
Q Consensus 82 ~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 119 (133)
.|++++++- . ......+..+..|.+.++++
T Consensus 322 ~L~L~~N~i-~-------~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 322 NLYLDHNSI-V-------TLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EEECCSSCC-C-------CCCCCTTCCCSEEECCSSCE
T ss_pred EEECCCCcc-c-------eeCchhhccCCEEEcCCCCc
Confidence 555554431 1 01123445556666665544
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.93 E-value=1.7e-09 Score=82.92 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=41.8
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCc-cccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLE-ELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++|++|++++|......|..++.+++|+.|+++++.... .+|. .++.+++|++|++++|......|..+..+++|
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 445555555543333334444555555555555543222 1344 45555666666665544333334445555566
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
++|++++|.
T Consensus 500 ~~L~Ls~N~ 508 (606)
T 3vq2_A 500 QLLNMSHNN 508 (606)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 666665553
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.92 E-value=4.2e-09 Score=76.04 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l 77 (133)
+++|++|+++++ .+..++ ..+..+++|++|+++++. +..+|.. .++.+++|++|+++++ .++.+|. .+..+
T Consensus 75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l 148 (353)
T 2z80_A 75 CVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSS---WFKPLSSLTFLNLLGN-PYKTLGETSLFSHL 148 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHH---HHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred CCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHh---HhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence 356777777775 454443 446677777777777653 5556551 2566667777777663 3555654 45566
Q ss_pred CCccEEEEecCc
Q 048450 78 TTLQELTIHRCP 89 (133)
Q Consensus 78 ~~L~~L~i~~c~ 89 (133)
++|++|+++++.
T Consensus 149 ~~L~~L~l~~n~ 160 (353)
T 2z80_A 149 TKLQILRVGNMD 160 (353)
T ss_dssp TTCCEEEEEESS
T ss_pred CCCcEEECCCCc
Confidence 667777766653
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.92 E-value=2.1e-09 Score=69.89 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=67.4
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccC--cCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l 77 (133)
+++|++|++++|. +..+ ..+..+++|+.|+++++. +.. +|. .++.+++|++|+++++ .++.+| ..+..+
T Consensus 48 l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l 119 (168)
T 2ell_A 48 FVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDM----LAEKLPNLTHLNLSGN-KLKDISTLEPLKKL 119 (168)
T ss_dssp GGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCH----HHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred CCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHH----HHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence 4689999999974 7667 678899999999999976 555 666 5666999999999986 577776 678889
Q ss_pred CCccEEEEecCc
Q 048450 78 TTLQELTIHRCP 89 (133)
Q Consensus 78 ~~L~~L~i~~c~ 89 (133)
++|+.|++++++
T Consensus 120 ~~L~~L~l~~N~ 131 (168)
T 2ell_A 120 ECLKSLDLFNCE 131 (168)
T ss_dssp SCCCEEECCSSG
T ss_pred CCCCEEEeeCCc
Confidence 999999999986
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.92 E-value=1.1e-08 Score=71.61 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=51.1
Q ss_pred CCCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 78 (133)
+++|++|+++++..+..+ |..+..+++|+.|+++++. +..++.. .++.+++|++|+++++. ++.+|.. +..++
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 153 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPG---LFRGLAALQYLYLQDNA-LQALPDDTFRDLG 153 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHh---HhhCCcCCCEEECCCCc-ccccCHhHhccCC
Confidence 356788888876556666 3556677777777777754 4444321 55666667777766643 4444432 55566
Q ss_pred CccEEEEecC
Q 048450 79 TLQELTIHRC 88 (133)
Q Consensus 79 ~L~~L~i~~c 88 (133)
+|++|+++++
T Consensus 154 ~L~~L~l~~n 163 (285)
T 1ozn_A 154 NLTHLFLHGN 163 (285)
T ss_dssp TCCEEECCSS
T ss_pred CccEEECCCC
Confidence 6666666655
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.92 E-value=7.7e-10 Score=78.97 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=37.1
Q ss_pred CccEEeecCCCCCc--cCCccCCCCCCccEEEecc-CCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 3 RLSSLTVGSCNKLK--ALPDYLLQTTALQELSICS-CDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 3 ~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~-c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
++++|+++++..-+ .+|..++.+++|++|++++ +.....+|. .++.+++|++|+++++...+.+|..+..+++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 34555555543222 4454555555555555553 222223444 4444555555555443322244444444444
Q ss_pred ccEEEEecC
Q 048450 80 LQELTIHRC 88 (133)
Q Consensus 80 L~~L~i~~c 88 (133)
|++|+++++
T Consensus 127 L~~L~Ls~N 135 (313)
T 1ogq_A 127 LVTLDFSYN 135 (313)
T ss_dssp CCEEECCSS
T ss_pred CCEEeCCCC
Confidence 444444443
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.92 E-value=1.5e-08 Score=69.28 Aligned_cols=104 Identities=22% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..+ |..+..+++|+.|+++++. ++.+|.. .++.+++|++|+++++ .++.+|.. +..+++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVG---VFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChh---hcccCCCcCEEECCCC-cCCccChhHhCcchh
Confidence 57899999996 45555 5667899999999999965 7888763 5688999999999985 57777765 578999
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT 117 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~ 117 (133)
|+.|+++++. +. ..+..+..+.++..|.+.++
T Consensus 114 L~~L~Ls~N~-l~-----~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 114 LKELFMCCNK-LT-----ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCEEECCSSC-CC-----SCCTTGGGCTTCSEEECCSS
T ss_pred hCeEeccCCc-cc-----ccCcccccCCCCCEEECCCC
Confidence 9999999875 22 12333456667777776653
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.92 E-value=1.6e-08 Score=70.64 Aligned_cols=82 Identities=27% Similarity=0.321 Sum_probs=39.3
Q ss_pred CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..++.. ++.+++|+.|+++++. +..++.. .++.+++|++|+++++. +..+|.. +..+++
T Consensus 109 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 109 TNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKG---VFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHH---HhccCccCCEEECCCCC-cCccCHHHhcCCcc
Confidence 44555555554 33334322 3455555555555542 4444431 23455555555555533 3344332 344555
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|+++++.
T Consensus 183 L~~L~L~~N~ 192 (272)
T 3rfs_A 183 LKDLRLYQNQ 192 (272)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 5555555543
No 39
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.91 E-value=1.1e-09 Score=86.52 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++|++|+|+++ .+..+|..++.+++|+.|+++++. +..+|. .++.+++|++|+++++ .++.+|..+..+++|
T Consensus 246 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~----~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 246 YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA----ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS----SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccCh----hhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 478999999996 677999889999999999999975 779998 8999999999999985 588999999999999
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
+.|+++++.
T Consensus 319 ~~L~L~~N~ 327 (727)
T 4b8c_D 319 QFLGVEGNP 327 (727)
T ss_dssp CCEECTTSC
T ss_pred cEEeCCCCc
Confidence 999999885
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.91 E-value=8.7e-09 Score=76.76 Aligned_cols=114 Identities=18% Similarity=0.383 Sum_probs=57.1
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccc-------------------cccCCCCCCccEEe
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILE-------------------DRRTTDIPRLTSLW 60 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~-------------------~~~~~~l~~L~~L~ 60 (133)
+++|++|++++|..++.++. .+..+++|+.|+++++. +..+|.-. ...+..+++|+.|+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 35677777777666666663 34566666666666643 44444200 00334444444444
Q ss_pred ecCCCCCCcc-CcCCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCcccee
Q 048450 61 ISDCPNLKVL-PDYLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 61 l~~c~~l~~l-p~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 121 (133)
++++. +..+ |..+..+++|+.|+++++. +. ......+..+.++..+.+.++++.+
T Consensus 249 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 249 VMNSQ-VSLIERNAFDGLASLVELNLAHNN-LS----SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEEECCSSC-CS----CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred eCCCc-CceECHHHhcCCCCCCEEECCCCc-CC----ccChHHhccccCCCEEEccCCCcCC
Confidence 44432 2222 3334445555555555543 11 0111223455666777777766643
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.90 E-value=1.8e-08 Score=70.22 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=13.3
Q ss_pred CccEEeecCCCCCccCCcc-CCCCCCccEEEecc
Q 048450 3 RLSSLTVGSCNKLKALPDY-LLQTTALQELSICS 35 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~ 35 (133)
+|++|+++++ .+..+|.. +..+++|++|++++
T Consensus 62 ~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 62 KLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4444444442 33333322 23444444444444
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.89 E-value=2.7e-09 Score=82.18 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=54.8
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++......|..++.+++|+.|+++++. +..+|. .++.+++|+.|++++|. +..+|..+..+++|+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~----~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL----YGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 327 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC----SSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc----ccccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence 455555555543222234455556666666666543 555555 45556666666666543 445555555555666
Q ss_pred EEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450 82 ELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW 119 (133)
Q Consensus 82 ~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 119 (133)
.|++++|.. . +.....+..+..|.+.++++
T Consensus 328 ~L~L~~N~l-~-------~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 328 NLYLDHNSI-V-------TLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EEECCSSCC-C-------CCCCCTTCCCSEEECCSSCE
T ss_pred EEECCCCCC-C-------CcChhhcCCCCEEEeeCCCC
Confidence 666665541 1 11233455666666666554
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.89 E-value=8.9e-09 Score=76.46 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=70.1
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|++|+++++ .+..+|. .+..+++|+.|++.++..+..++.. .+..+++|++|+++++ .++.+|. +..+++
T Consensus 135 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~ 208 (440)
T 3zyj_A 135 LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMC-NLREIPN-LTPLIK 208 (440)
T ss_dssp CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTS-CCSSCCC-CTTCSS
T ss_pred cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCC-cCccccc-cCCCcc
Confidence 478999999996 5777774 6789999999999999889988874 6888999999999985 5778874 677889
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|+.|+++++.
T Consensus 209 L~~L~Ls~N~ 218 (440)
T 3zyj_A 209 LDELDLSGNH 218 (440)
T ss_dssp CCEEECTTSC
T ss_pred cCEEECCCCc
Confidence 9999998874
No 44
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.89 E-value=1.5e-08 Score=67.64 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 78 (133)
+++|++|+++++ .+..++ ..+..+++|+.|+++++. +..++.. .+..+++|++|++++ +.+..+|.. +..++
T Consensus 53 l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~---~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 53 YKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPR---TFDGLKSLRLLSLHG-NDISVVPEGAFNDLS 126 (193)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTT---TTTTCTTCCEEECCS-SCCCBCCTTTTTTCT
T ss_pred ccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHH---HhCCCCCCCEEECCC-CCCCeeChhhhhcCc
Confidence 468999999995 677776 457899999999999965 7777763 688999999999998 457788864 67899
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|+.|++++++
T Consensus 127 ~L~~L~L~~N~ 137 (193)
T 2wfh_A 127 ALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEEeCCCC
Confidence 99999999765
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.88 E-value=1.9e-09 Score=83.75 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=65.7
Q ss_pred CCCccEEeecCCCCCcc------------------CCccCC--CCCCccEEEeccCCCCccccccccccCCCCCCccEEe
Q 048450 1 MPRLSSLTVGSCNKLKA------------------LPDYLL--QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLW 60 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~ 60 (133)
+++|++|+++++. +.. +|..++ ++++|++|++++|...+.+|. .++.+++|++|+
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~ 279 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLIN 279 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEE
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEE
Confidence 4688999999875 555 888888 899999999998877788887 788888999999
Q ss_pred ecCCCCCC--ccCcCCCCC------CCccEEEEecCc
Q 048450 61 ISDCPNLK--VLPDYLLQT------TTLQELTIHRCP 89 (133)
Q Consensus 61 l~~c~~l~--~lp~~~~~l------~~L~~L~i~~c~ 89 (133)
++++..+. .+|..+..+ ++|++|+++++.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 88876354 477666554 677888777764
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.88 E-value=1.6e-08 Score=75.60 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=34.1
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++|++|+++++ .+..+ |..+.++++|++|+++++. +..+|.. .++.+++|++|+++++......|..+..+++|
T Consensus 56 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 56 PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLG---VFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTT---SSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcc---cccCCCCCCEEECCCCccccCChhHccccccC
Confidence 34444444443 22222 3334444555555554432 4444431 23444455555554433222223334444444
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|+++++
T Consensus 131 ~~L~l~~n 138 (477)
T 2id5_A 131 KSLEVGDN 138 (477)
T ss_dssp CEEEECCT
T ss_pred CEEECCCC
Confidence 44444443
No 47
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.88 E-value=3.9e-09 Score=67.32 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCccEEeecCCCCCc--cCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLK--ALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
++|++|+++++. +. .+|..+..+++|+.|++++|. +..+ . .++.+++|++|+++++.....+|..+..+++
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI-A----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-T----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc-h----hhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 578999999974 55 788878899999999999974 7776 4 6888999999999986643337766667889
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT 117 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~ 117 (133)
|++|+++++. +.... ....+..+.++..+.+.++
T Consensus 90 L~~L~ls~N~-i~~~~---~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLS---TIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCEEECTTSC-CCSHH---HHGGGGGCTTCCEEECTTC
T ss_pred CCEEECCCCc-CCChH---HHHHHhhCCCCCEEeCcCC
Confidence 9999999876 22110 0022345566666666654
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.88 E-value=8.2e-09 Score=78.91 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=47.0
Q ss_pred CccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450 3 RLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L 80 (133)
++++|+++++ .+..+| ..+.++++|++|++++|. ++.++.+ .++.+++|++|+++++ .++.+|.. +.++++|
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~---~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG---AYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTT---TTTTCTTCCEEECTTC-CCCEECGGGGTTCTTC
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChh---HhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCC
Confidence 4666666663 555665 345666666666666653 5555542 4556666666666663 35555532 4556666
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|+++++
T Consensus 127 ~~L~Ls~N 134 (635)
T 4g8a_A 127 QKLVAVET 134 (635)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 66666655
No 49
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.88 E-value=3.4e-08 Score=66.20 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=77.3
Q ss_pred CCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++ .+..++.. ++.+++|+.|+++++ .++.++.. .++.+++|++|+++++. +..+|.. +..+++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNG---VFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChh---hcCCCCCcCEEECCCCc-CCccCHhHhcCccC
Confidence 47899999996 66677754 688999999999996 47777763 46789999999999854 6677754 578999
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT 117 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~ 117 (133)
|++|+++++. +.. .....+..+.++..|.+.++
T Consensus 102 L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 102 LKELALNTNQ-LQS----LPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCc-Ccc----cCHhHhccCCcCCEEECCCC
Confidence 9999999875 221 11222455666777766653
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.88 E-value=6.7e-09 Score=77.39 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=66.2
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|++|+++++ .+..+|. .+..+++|+.|++.+|..++.++.. .+..+++|++|+++++ .+..+| .+..+++
T Consensus 146 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~ 219 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMC-NIKDMP-NLTPLVG 219 (452)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTS-CCSSCC-CCTTCTT
T ss_pred cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCC-cccccc-ccccccc
Confidence 478999999996 6777774 5789999999999999989998874 5778888999988875 466666 3566777
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|+.|+++++.
T Consensus 220 L~~L~Ls~N~ 229 (452)
T 3zyi_A 220 LEELEMSGNH 229 (452)
T ss_dssp CCEEECTTSC
T ss_pred ccEEECcCCc
Confidence 8888877764
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.87 E-value=3.7e-09 Score=75.44 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCCccEEeecC-CCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGS-CNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~-~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|++|++++ +.....+|..++.+++|++|+++++.-.+.+|. .++.+++|++|+++++.....+|..+..+++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 47899999995 444457888899999999999999764447887 7899999999999997655578888999999
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCcccC-CCCceEEcCc
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKIS-HIPHIKWSIT 117 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i~-~l~~l~~~~~ 117 (133)
|++|+++++..-. ..+..+..+. .+..+.+.++
T Consensus 151 L~~L~L~~N~l~~-----~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 151 LVGITFDGNRISG-----AIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CCEEECCSSCCEE-----ECCGGGGCCCTTCCEEECCSS
T ss_pred CCeEECcCCcccC-----cCCHHHhhhhhcCcEEECcCC
Confidence 9999999876221 1122233444 6666766654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.86 E-value=7.5e-09 Score=73.20 Aligned_cols=82 Identities=24% Similarity=0.290 Sum_probs=36.6
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCc-cccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLE-ELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~ 79 (133)
++|++|+++++......+..+..+++|+.|+++++.... .+|. .++.+++|++|+++++. +..+ |..+..+++
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS 200 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCC-cCCcCHHHhcCCCC
Confidence 344445544432222222334444555555555433111 1343 45555555555555543 3333 344445555
Q ss_pred ccEEEEecC
Q 048450 80 LQELTIHRC 88 (133)
Q Consensus 80 L~~L~i~~c 88 (133)
|++|+++++
T Consensus 201 L~~L~L~~N 209 (306)
T 2z66_A 201 LQVLNMSHN 209 (306)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 555555554
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.86 E-value=9.1e-09 Score=76.27 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=76.7
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L 80 (133)
++|++|+++++......|..++.+++|+.|+++++. +..++.. .++.+++|++|+++++. ++.+ |..+..+++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN---AFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKL 349 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSSC-CCEECGGGGTTCTTC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh---HhcCcccCCEEECCCCc-cCCcChhHhcCcccC
Confidence 468888888875555556778899999999999976 5555432 78889999999999865 5555 5667889999
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcC
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSI 116 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~ 116 (133)
++|+++++.. .. .....+..+.++..|.+.+
T Consensus 350 ~~L~Ls~N~l-~~----~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 350 EVLDLSYNHI-RA----LGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CEEECCSSCC-CE----ECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcc-cc----cChhhccccccccEEECCC
Confidence 9999998862 21 1223345566777777665
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.86 E-value=2.5e-08 Score=72.77 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=53.9
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCC
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~ 78 (133)
+++|++|+++++ .+..++ ..+..+++|+.|+++++. +..++.. .++.+++|++|+++++ .++.+|..+ ..++
T Consensus 68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~ 141 (390)
T 3o6n_A 68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLVLERN-DLSSLPRGIFHNTP 141 (390)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHH---HhcCCCCCCEEECCCC-ccCcCCHHHhcCCC
Confidence 356777777775 455555 356677777777777754 5555442 4667777777777764 466666553 5677
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|++|+++++.
T Consensus 142 ~L~~L~L~~n~ 152 (390)
T 3o6n_A 142 KLTTLSMSNNN 152 (390)
T ss_dssp TCCEEECCSSC
T ss_pred CCcEEECCCCc
Confidence 77777777664
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.86 E-value=5.7e-09 Score=80.01 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCccEEeecCCCCCc-cCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLK-ALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++|++|+++++.... .+|..++.+++|+.|++++|. +..++.. .++.+++|++|+++++......|..+..+++|
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG---VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChh---hhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 456666666653222 145555666666666666654 3333221 45556666666666654333335555555666
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
+.|++++|.
T Consensus 524 ~~L~l~~N~ 532 (606)
T 3vq2_A 524 STLDCSFNR 532 (606)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 666666554
No 56
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.85 E-value=3e-08 Score=67.37 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT 78 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 78 (133)
+++++|+++++ .+..++. .+..+++|+.|+++++. +..+ |. .+..+++|++|+++++ .++.+|.. +..++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~----~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPD----AFQGLRSLNSLVLYGN-KITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTT----TTTTCSSCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHH----HhhCCcCCCEEECCCC-cCCccCHhHccCCC
Confidence 46899999985 6777774 67889999999999965 6666 55 7889999999999984 57788876 57799
Q ss_pred CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450 79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT 117 (133)
Q Consensus 79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~ 117 (133)
+|+.|+++++.- . ......+..+.++..|.+.++
T Consensus 105 ~L~~L~L~~N~l-~----~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 105 SLQLLLLNANKI-N----CLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp TCCEEECCSSCC-C----CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCC-C----EeCHHHcCCCCCCCEEECCCC
Confidence 999999998752 2 122234555667777776653
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.85 E-value=1.2e-08 Score=72.19 Aligned_cols=109 Identities=19% Similarity=0.285 Sum_probs=77.0
Q ss_pred CCCccEEeecCCCCCc-cCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCc-CCCCC
Q 048450 1 MPRLSSLTVGSCNKLK-ALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l 77 (133)
+++|++|+++++.... .+|..+..+++|+.|+++++. +..+ |. .++.+++|++|+++++. +..++. .+..+
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 222 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT----AFNSLSSLQVLNMSHNN-FFSLDTFPYKCL 222 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECTTSC-CSBCCSGGGTTC
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHH----HhcCCCCCCEEECCCCc-cCccChhhccCc
Confidence 4688999999864333 367778889999999999875 6666 44 78889999999998855 666654 56778
Q ss_pred CCccEEEEecCchhHHhhcCCCCCCCccc-CCCCceEEcCccce
Q 048450 78 TTLQELTIHRCPLLENRYREGKGEDWHKI-SHIPHIKWSITRWC 120 (133)
Q Consensus 78 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~i-~~l~~l~~~~~~~~ 120 (133)
++|+.|+++++.-.. .....+..+ .++..+.+.++.+.
T Consensus 223 ~~L~~L~L~~N~l~~-----~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 223 NSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTSCCCB-----CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCCEeECCCCCCcc-----cCHHHHHhhhccCCEEEccCCCee
Confidence 899999999875221 122223344 36777777776653
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.85 E-value=2e-08 Score=80.17 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=40.9
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcC--CCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDY--LLQT 77 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~l 77 (133)
++|++|+++++.....+ |..++++++|++|+++++. +..+ |. .++.+++|++|++++|.....+|.. +.++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHh----HccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 34555555554444444 2344555555555555543 3333 33 4555555555555554433333332 4555
Q ss_pred CCccEEEEecCc
Q 048450 78 TTLQELTIHRCP 89 (133)
Q Consensus 78 ~~L~~L~i~~c~ 89 (133)
++|++|+++++.
T Consensus 123 ~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 123 KALTRLDLSKNQ 134 (844)
T ss_dssp SSCCEEEEESCC
T ss_pred CCCCEEECCCCc
Confidence 566666665543
No 59
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.84 E-value=6.1e-09 Score=80.16 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=76.0
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
.|+.|+++++ .+..+|. ++.+++|+.|+++++. +..+|. .++.+++|+.|+++++ .++.+| .+..+++|+.
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~----~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR-LRALPP----ALAALRCLEVLQASDN-ALENVD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC-CCCCCG----GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCE
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCccc-ccccch----hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcE
Confidence 5788889885 6777885 8888899999998864 778888 7888999999999884 577788 7788889999
Q ss_pred EEEecCchhHHhhcCCC-CCCCcccCCCCceEEcCcc
Q 048450 83 LTIHRCPLLENRYREGK-GEDWHKISHIPHIKWSITR 118 (133)
Q Consensus 83 L~i~~c~~l~~~~~~~~-~~~~~~i~~l~~l~~~~~~ 118 (133)
|+++++. +.. .. +..+..++++..|.+.++.
T Consensus 513 L~Ls~N~-l~~----~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 513 LLLCNNR-LQQ----SAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSC-CCS----SSTTGGGGGCTTCCEEECTTSG
T ss_pred EECCCCC-CCC----CCCcHHHhcCCCCCEEEecCCc
Confidence 9998875 221 11 3334556677777777653
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.84 E-value=2.5e-08 Score=67.78 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=67.9
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~ 78 (133)
+++|++|+++++ .+..++. .+..+++|++|+++++. +..++.. .+..+++|++|+++++. ++.+ |..+..++
T Consensus 80 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 153 (220)
T 2v70_A 80 ASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGND---SFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLH 153 (220)
T ss_dssp CTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTT---SSTTCTTCSEEECTTSC-CCCBCTTTTTTCT
T ss_pred CCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHh---HcCCCccCCEEECCCCc-CCEECHHHhcCCC
Confidence 468999999996 5666764 47899999999999965 6666432 78899999999999854 6666 67788999
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|+.|++++++
T Consensus 154 ~L~~L~L~~N~ 164 (220)
T 2v70_A 154 SLSTLNLLANP 164 (220)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEecCcC
Confidence 99999999876
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.84 E-value=9.4e-09 Score=74.17 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=49.7
Q ss_pred CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450 3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L 80 (133)
+|++|+++++ .+..+|. .+..+++|+.|+++++. +..++.. .++.+++|++|+++++ .++.+|.. +..+++|
T Consensus 53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEED---SFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTC
T ss_pred cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHh---hcCCCCCCCEEECCCC-cCCcCCHhHhCCCccC
Confidence 5667777764 4555553 45667777777776653 5555431 4666677777777663 35556544 5566677
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
++|+++++.
T Consensus 127 ~~L~L~~n~ 135 (353)
T 2z80_A 127 TFLNLLGNP 135 (353)
T ss_dssp SEEECTTCC
T ss_pred CEEECCCCC
Confidence 777776653
No 62
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=3e-08 Score=64.94 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=68.5
Q ss_pred CCCccEEeecCCCCCccCCcc-CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDY-LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 78 (133)
+++|++|+++++ .+..+|.. +..+++|+.|+++++. +..+|.. .++.+++|++|+++++ .++.+|.. +..++
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~ 124 (177)
T 2o6r_A 51 LTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNG---VFDKLTQLKELALDTN-QLKSVPDGIFDRLT 124 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred cccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCHH---HhhCCcccCEEECcCC-cceEeCHHHhcCCc
Confidence 468999999996 67778754 5899999999999964 7777763 4688999999999985 57788876 46789
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|++|++++++
T Consensus 125 ~L~~L~l~~N~ 135 (177)
T 2o6r_A 125 SLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEEecCCC
Confidence 99999999876
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.83 E-value=2e-08 Score=72.07 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++ .+..++. +..+++|++|+++++ .+..++ .++.+++|++|+++++. +..++. +..+++|+
T Consensus 66 ~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-----~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 66 TNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDIS-----ALQNLTNLRELYLNEDN-ISDISP-LANLTKMY 135 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-----GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCC
T ss_pred CCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCch-----HHcCCCcCCEEECcCCc-ccCchh-hccCCcee
Confidence 45666666664 4445553 556666666666665 354443 35556666666666543 444444 45556666
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
.|++++|.
T Consensus 136 ~L~l~~n~ 143 (347)
T 4fmz_A 136 SLNLGANH 143 (347)
T ss_dssp EEECTTCT
T ss_pred EEECCCCC
Confidence 66666654
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.82 E-value=1.3e-08 Score=77.74 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCccEEeecCCCCCcc-CCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKA-LPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~ 79 (133)
++|++|+++++..... .|..+..+++|+.|++++|. +..++.. .++.+++|++|+++++ .+..++. .+..+++
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~---~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT---AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTT
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH---HHcCCCCCCEEECCCC-cCCCCChhHHhCCCC
Confidence 4667777777644443 34566778888888888864 6666432 6777888888888774 4666653 4667788
Q ss_pred ccEEEEecCchhHHhhcCCCCCCCccc-CCCCceEEcCcccee
Q 048450 80 LQELTIHRCPLLENRYREGKGEDWHKI-SHIPHIKWSITRWCC 121 (133)
Q Consensus 80 L~~L~i~~c~~l~~~~~~~~~~~~~~i-~~l~~l~~~~~~~~~ 121 (133)
|+.|+++++.-.. ..+..+..+ +.+..|.+.++++-|
T Consensus 544 L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 544 LQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 8888888765211 112223333 467777777777743
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.82 E-value=1.2e-08 Score=77.23 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=44.4
Q ss_pred CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCC--ccCcCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLK--VLPDYLLQTT 78 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~ 78 (133)
++|++|+++++ .+..++ ..+..+++|++|+++++. +..++.. .++.+++|++|+++++. +. .+|..+.+++
T Consensus 50 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 50 ANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSS---WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLT 123 (549)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHH---HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCT
T ss_pred CcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHH---HhccCCCCcEEECCCCc-ccccchhhhhhccC
Confidence 56667777665 344443 445666666666666643 4444431 35556666666665543 33 2344455555
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|++|+++++.
T Consensus 124 ~L~~L~L~~n~ 134 (549)
T 2z81_A 124 NLQTLRIGNVE 134 (549)
T ss_dssp TCCEEEEEESS
T ss_pred CccEEECCCCc
Confidence 66666665543
No 66
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=3.9e-08 Score=64.31 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=79.5
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccE
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQE 82 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~ 82 (133)
.+++++++ ..+..+|..+. ++|+.|+++++. +..++.. .++.+++|++|+++++ .+..+|.. +..+++|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPG---VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCC-CCcCccCccCC--CCCcEEEcCCCc-CCccChh---hhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence 46788888 47888997653 789999999964 7777442 7889999999999984 58888876 478999999
Q ss_pred EEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450 83 LTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120 (133)
Q Consensus 83 L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 120 (133)
|+++++. +.. .....+..+.++..|.+.++++.
T Consensus 83 L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQ-LKS----IPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSC-CCC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCc-cCE----eCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999875 321 12223567788888888887764
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.81 E-value=1.3e-08 Score=79.01 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=44.7
Q ss_pred CccEEeecCCCCCccCCccCC--CCCCccEEEeccCCCCccccccccccCCCCCCccEEeec------CCCCCCccCcCC
Q 048450 3 RLSSLTVGSCNKLKALPDYLL--QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWIS------DCPNLKVLPDYL 74 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~------~c~~l~~lp~~~ 74 (133)
+|++|+++++ .+..+|..+. .+++|+.|+++++. +..+|. .++.+++|++|+++ ++...+.+|..+
T Consensus 489 ~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPT----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp GCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCC----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred CccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC-CCCcCh----hhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 5556666554 3445555554 56666666666543 444555 55556666666663 233344555555
Q ss_pred CCCCCccEEEEecCc
Q 048450 75 LQTTTLQELTIHRCP 89 (133)
Q Consensus 75 ~~l~~L~~L~i~~c~ 89 (133)
..+++|+.|++++|.
T Consensus 563 ~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 563 TLCPSLTQLQIGSND 577 (636)
T ss_dssp GGCSSCCEEECCSSC
T ss_pred hcCCCCCEEECCCCc
Confidence 556666666666554
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.81 E-value=3.8e-08 Score=75.79 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=54.2
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 78 (133)
+++|++|+++++ .+..++ ..++.+++|+.|+++++. +..+|.. .++.+++|++|+++++ .+..+|.. +..++
T Consensus 74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 74 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLVLERN-DLSSLPRGIFHNTP 147 (597)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH---HHcCCCCCCEEEeeCC-CCCCCCHHHhccCC
Confidence 356777777775 455554 356777777777777754 5555542 4567777777777764 35566655 36677
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|++|+++++.
T Consensus 148 ~L~~L~Ls~N~ 158 (597)
T 3oja_B 148 KLTTLSMSNNN 158 (597)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeeCCc
Confidence 77777777664
No 69
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=4.9e-08 Score=64.15 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=77.8
Q ss_pred cEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEE
Q 048450 5 SSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQEL 83 (133)
Q Consensus 5 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L 83 (133)
+.+++++ ..+..+|..+. ++|+.|+++++. +..++.. .++.+++|++|+++++ .++.+|.. +..+++|+.|
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPG---VFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHH---HhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEE
Confidence 5678887 47888997664 799999999965 7777442 7889999999999984 68888876 4789999999
Q ss_pred EEecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450 84 TIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120 (133)
Q Consensus 84 ~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 120 (133)
+++++. +.. .....+..+.++..|.+.++.+.
T Consensus 87 ~L~~N~-l~~----l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNH-LKS----IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSC-CCC----CCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCc-cce----eCHHHhccccCCCEEEeCCCCcc
Confidence 999875 221 11222556778888888887653
No 70
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.80 E-value=8.7e-09 Score=79.28 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=71.1
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc--CcCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL--PDYLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~~~~l~ 78 (133)
+++|+.|+++++ .+..+|..++.+++|+.|+++++. +..+|. ++.+++|+.|+++++ .+..+ |..+..++
T Consensus 462 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~-----l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 462 LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVDG-----VANLPRLQELLLCNN-RLQQSAAIQPLVSCP 533 (567)
T ss_dssp GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-----GTTCSSCCEEECCSS-CCCSSSTTGGGGGCT
T ss_pred cccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCcc-----cCCCCCCcEEECCCC-CCCCCCCcHHHhcCC
Confidence 468999999996 677999999999999999999964 777874 888999999999985 57777 88899999
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|+.|++++++
T Consensus 534 ~L~~L~L~~N~ 544 (567)
T 1dce_A 534 RLVLLNLQGNS 544 (567)
T ss_dssp TCCEEECTTSG
T ss_pred CCCEEEecCCc
Confidence 99999999986
No 71
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.79 E-value=7.3e-09 Score=67.96 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCC-CCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYL-LQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L 80 (133)
++|++|+++++ .+..+|......++|+.|+++++. +..+ . .++.+++|++|+++++ .+..+|..+ ..+++|
T Consensus 19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~----~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKL-D----GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEE-C----CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcc-c----ccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 45677777775 455565322223377777777753 5555 3 4666777777777664 355666544 556677
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
++|+++++.
T Consensus 91 ~~L~L~~N~ 99 (176)
T 1a9n_A 91 TELILTNNS 99 (176)
T ss_dssp CEEECCSCC
T ss_pred CEEECCCCc
Confidence 777776654
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.79 E-value=4.6e-08 Score=78.11 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=70.2
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++++|+++++ .+..+ |..+..+++|++|+++++.....++.+ .++++++|++|+++++......|..+.++++|
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE---AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTT---TTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHH---HhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 67999999996 45555 577899999999999998777788432 79999999999999976444458889999999
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
++|++++|.
T Consensus 100 ~~L~Ls~n~ 108 (844)
T 3j0a_A 100 FELRLYFCG 108 (844)
T ss_dssp CCEECTTCC
T ss_pred CEeeCcCCC
Confidence 999999885
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.79 E-value=2.1e-08 Score=75.63 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=40.4
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCC-ccCcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLK-VLPDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~ 79 (133)
++|++|+++++ .+..+ |..++.+++|++|+++++ .++.+|. . .+++|++|+++++.... .+|..++.+++
T Consensus 45 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 45 SKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN-KLVKISC----H--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp TTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC----C--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred ccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-ceeecCc----c--ccCCccEEeccCCccccccchhhhccCCc
Confidence 44555555554 23333 344555555555555554 2445554 3 45556666665543222 24455555566
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|+++++.
T Consensus 117 L~~L~L~~n~ 126 (520)
T 2z7x_B 117 LKFLGLSTTH 126 (520)
T ss_dssp CCEEEEEESS
T ss_pred ceEEEecCcc
Confidence 6666665543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.79 E-value=5.1e-08 Score=67.97 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=42.6
Q ss_pred CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCCc
Q 048450 3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L 80 (133)
+|++|+++++ .+..++. .+..+++|+.|+++++. +..++.. .++.+++|++|+++++. +..++ ..+..+++|
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG---AYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCC-CCEECTT---TTTTCTTCCEEECTTCC-CCEECTTTTTTCTTC
T ss_pred CccEEECCCC-cccccCHhHhccccCCcEEECCCCc-CCccCHH---HccCCcCCCEEECCCCc-cCccChhhhcCCccc
Confidence 4666666664 4444543 45566666666666653 4444432 45555666666665533 33333 334455555
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|+++++
T Consensus 103 ~~L~l~~n 110 (276)
T 2z62_A 103 QKLVAVET 110 (276)
T ss_dssp CEEECTTS
T ss_pred cEEECCCC
Confidence 55555544
No 75
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=2.5e-08 Score=71.71 Aligned_cols=83 Identities=27% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++|++|+|++.+.+..+| ..++.+++|+.|+++++ .+..++.. .++.+++|++|++++ +.+..+|..+.....|
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~---~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD---AFHFTPRLSRLNLSF-NALESLSWKTVQGLSL 105 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT---GGGSCSCCCEEECCS-SCCSCCCSTTTCSCCC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH---HhcCCcCCCEEeCCC-CccceeCHHHcccCCc
Confidence 467888887645677777 45778888888888885 46666653 567788888888877 4577777654433348
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
+.|++.+++
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 888887654
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1.8e-08 Score=80.97 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=25.4
Q ss_pred CccEEEeccCCCCccccccccccCC--CCCCccEEeecCCCCCCccCcCCCCCCCccEEEEec
Q 048450 27 ALQELSICSCDLLEELPILEDRRTT--DIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHR 87 (133)
Q Consensus 27 ~L~~L~l~~c~~l~~lp~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~ 87 (133)
+|+.|++++|. +..+|. .+. .+++|+.|+++++. +..+|..+..+++|+.|++++
T Consensus 729 ~L~~L~Ls~N~-L~~lp~----~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 729 LLTTIDLRFNK-LTSLSD----DFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GCCEEECCSSC-CCCCCG----GGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCC
T ss_pred CccEEECCCCC-CccchH----HhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCC
Confidence 45555555442 444444 333 44555555554432 333444444444555555544
No 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.77 E-value=5.2e-09 Score=66.72 Aligned_cols=81 Identities=22% Similarity=0.332 Sum_probs=67.4
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc-ccccccccCCCCCCccEEeecCCCCCCccC--cCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE-LPILEDRRTTDIPRLTSLWISDCPNLKVLP--DYLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l 77 (133)
+++|++|+++++ .+..+ ..++.+++|+.|+++++. +.. +|. .++.+++|++|+++++. ++.+| ..+..+
T Consensus 41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~----~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l 112 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEV----LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKL 112 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHH----HHHHCTTCCEEECTTSC-CCSHHHHGGGGGC
T ss_pred cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHH----HhhhCCCCCEEECCCCc-CCChHHHHHHhhC
Confidence 478999999996 66666 578899999999999976 555 776 66679999999999865 66664 678889
Q ss_pred CCccEEEEecCc
Q 048450 78 TTLQELTIHRCP 89 (133)
Q Consensus 78 ~~L~~L~i~~c~ 89 (133)
++|++|++++++
T Consensus 113 ~~L~~L~l~~N~ 124 (149)
T 2je0_A 113 ENLKSLDLFNCE 124 (149)
T ss_dssp TTCCEEECTTCG
T ss_pred CCCCEEeCcCCc
Confidence 999999999985
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.77 E-value=5.7e-08 Score=74.46 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=35.6
Q ss_pred CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++++|+++++ .+..+ |..++.+++|++|+++++. +..+ |. .++.+++|++|+++++......|..+..+++|
T Consensus 34 ~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 34 STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHED----TFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTT----TTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred cCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChh----hccCccccCeeeCCCCcccccChhhhcccccc
Confidence 3455555553 33333 2344555555555555543 3333 22 44445555555554433222223344444444
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|+++++
T Consensus 108 ~~L~L~~n 115 (606)
T 3t6q_A 108 KHLFFIQT 115 (606)
T ss_dssp CEEECTTS
T ss_pred cEeecccc
Confidence 44444443
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.76 E-value=5.6e-08 Score=70.56 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=35.0
Q ss_pred CccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCCCc
Q 048450 3 RLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L 80 (133)
+|++|+++++ .+..++ ..+..+++|+.|+++++. +..++.. .+..+++|++|+++++. +..+ |..+..+++|
T Consensus 65 ~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 65 NLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEF---LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL 138 (361)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred ccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHH---HhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence 4444444442 333333 224444555555554432 4444331 34445555555554432 3333 3334445555
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
+.|+++++
T Consensus 139 ~~L~L~~N 146 (361)
T 2xot_A 139 QKLYLSQN 146 (361)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555544
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.75 E-value=1.3e-08 Score=72.44 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=57.8
Q ss_pred CCCccEEeecCCCCCccCCccC--CCCCCccEEEeccCCCCccccccccccCCCC-----CCccEEeecCCCCCCccC-c
Q 048450 1 MPRLSSLTVGSCNKLKALPDYL--LQTTALQELSICSCDLLEELPILEDRRTTDI-----PRLTSLWISDCPNLKVLP-D 72 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l-----~~L~~L~l~~c~~l~~lp-~ 72 (133)
+++|++|+++++.-...+|..+ ..+++|++|+++++. +..+|. .++.+ ++|++|+++++. +..++ .
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDA----WLAELQQWLKPGLKVLSIAQAH-SLNFSCE 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSS----HHHHHHTTCCTTCCEEEEESCS-CCCCCTT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhH----HHHHHHHhhcCCCcEEEeeCCC-CccchHH
Confidence 3578888888865444677655 778888888888864 555554 45444 778888887754 44444 5
Q ss_pred CCCCCCCccEEEEecCc
Q 048450 73 YLLQTTTLQELTIHRCP 89 (133)
Q Consensus 73 ~~~~l~~L~~L~i~~c~ 89 (133)
.+..+++|++|+++++.
T Consensus 168 ~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNP 184 (312)
T ss_dssp TCCCCSSCCEEECCSCT
T ss_pred HhccCCCCCEEECCCCC
Confidence 67777788888887775
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.75 E-value=7.5e-08 Score=67.13 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=56.2
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~ 78 (133)
+++|++|+++++ .+..++. .+..+++|+.|+++++. +..++.. .+..+++|++|+++++. +..++. .+..++
T Consensus 51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 124 (276)
T 2z62_A 51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG---AFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (276)
T ss_dssp CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTT---TTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred ccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChh---hhcCCccccEEECCCCC-ccccCchhcccCC
Confidence 467888888886 5556653 56778888888888864 5555532 56677777777777644 444443 466677
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|++|+++++.
T Consensus 125 ~L~~L~l~~n~ 135 (276)
T 2z62_A 125 TLKELNVAHNL 135 (276)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECcCCc
Confidence 77777777654
No 82
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=2.3e-08 Score=65.52 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccC-CCCCCccEEeecCCCCCCccCc--CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRT-TDIPRLTSLWISDCPNLKVLPD--YLLQTT 78 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~--~~~~l~ 78 (133)
++|++|+++++ .+..+ ..+..+++|+.|+++++. +..+|. .+ +.+++|++|+++++ .++.+|. .+..++
T Consensus 42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIGE----GLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEECS----CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccCc----chhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 48999999996 67777 578899999999999965 888886 44 78999999999985 4788887 678899
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|+.|++++++
T Consensus 114 ~L~~L~l~~N~ 124 (176)
T 1a9n_A 114 SLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSSG
T ss_pred CCCEEEecCCC
Confidence 99999999987
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.74 E-value=4.1e-08 Score=76.25 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=38.3
Q ss_pred CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCCc
Q 048450 3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L 80 (133)
+|++|+++++. +..+ |..++.+++|++|+++++. +..+|.. .++.+++|++|+++++. +..+| ..+.++++|
T Consensus 50 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 50 QLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE-LSQLSDK---TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNL 123 (680)
T ss_dssp TCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTC
T ss_pred cCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc-cCccChh---hhccCCCCCEEECCCCc-cCccChhHccccCCC
Confidence 44455554432 2222 2333445555555555532 4444442 35555566666665543 33443 345555556
Q ss_pred cEEEEecC
Q 048450 81 QELTIHRC 88 (133)
Q Consensus 81 ~~L~i~~c 88 (133)
++|+++++
T Consensus 124 ~~L~Ls~n 131 (680)
T 1ziw_A 124 ITLDLSHN 131 (680)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66665554
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.74 E-value=5.4e-08 Score=73.38 Aligned_cols=61 Identities=21% Similarity=0.467 Sum_probs=35.6
Q ss_pred CCccEEeecCCCCCCccCcCCCCCCCccEEEEecCchhHHhhcCCCCC-CCcccCCCCceEEcCcccee
Q 048450 54 PRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGE-DWHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 54 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~-~~~~i~~l~~l~~~~~~~~~ 121 (133)
++|+.|+++++ .++.+|..+..+++|++|+++++. +.. .+. .+..+.++..+.+.++++.+
T Consensus 421 ~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~-----l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 421 PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKS-----VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCC-----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCc-----cCHHHhccCCcccEEECcCCCCcc
Confidence 45666666554 355666666667777777777764 221 111 24456667777777766543
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.73 E-value=2.7e-08 Score=75.37 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~ 79 (133)
++|++|+++++. +..+ |..+..+++|++|+++++. +..++.+ .++.+++|++|+++++. +..+|.. +..+++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGD---AFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTTSC-CCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChh---hccccccCCEEECCCCc-cCccCHHHhccCCC
Confidence 367777777753 4444 3556777778888777754 5555432 57777777888777754 4555443 667777
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|+++++.
T Consensus 100 L~~L~Ls~n~ 109 (549)
T 2z81_A 100 LKYLNLMGNP 109 (549)
T ss_dssp CCEEECTTCC
T ss_pred CcEEECCCCc
Confidence 7777777764
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.73 E-value=8.4e-08 Score=73.20 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=41.3
Q ss_pred CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
++|++|+++++ .+..++ ..+..+++|++|+++++. +..++.+ .++.+++|++|+++++. ++.+|.. .+++|
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFH---VFLFNQDLEYLDVSHNR-LQNISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTT---TTTTCTTCCEEECTTSC-CCEECSC--CCTTC
T ss_pred CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHH---HhCCCCCCCEEECCCCc-CCccCcc--ccccC
Confidence 34566666664 344444 345566666666666543 4444221 45555555555555532 4455544 44555
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
++|+++++.
T Consensus 124 ~~L~Ls~N~ 132 (562)
T 3a79_B 124 RHLDLSFND 132 (562)
T ss_dssp SEEECCSSC
T ss_pred CEEECCCCC
Confidence 555555443
No 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=5.3e-08 Score=78.34 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=50.5
Q ss_pred CccEEeecCCCCCccCCccCC--CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC------CCCCCccCcCC
Q 048450 3 RLSSLTVGSCNKLKALPDYLL--QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD------CPNLKVLPDYL 74 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~ 74 (133)
+|++|++++| .+..+|..+. .+++|+.|+++++. +..+|. .++.+++|+.|++++ +...+.+|..+
T Consensus 729 ~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 729 LLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp GCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred CccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccch----hhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 5666666664 4556665554 66677777776653 555666 566666677776654 33345566666
Q ss_pred CCCCCccEEEEecCc
Q 048450 75 LQTTTLQELTIHRCP 89 (133)
Q Consensus 75 ~~l~~L~~L~i~~c~ 89 (133)
..+++|+.|++++|.
T Consensus 803 ~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 803 TTCPSLIQLQIGSND 817 (876)
T ss_dssp GGCSSCCEEECCSSC
T ss_pred hcCCCCCEEECCCCC
Confidence 666667777776665
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.70 E-value=8.4e-08 Score=69.64 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=66.1
Q ss_pred CCccEEeecCCCCCccCCcc-CC-CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDY-LL-QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTT 78 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~-~~-~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~ 78 (133)
+.++.|+++++ .+..++.. +. .+++|+.|+++++. +..++.+ .+..+++|++|+++++ .+..++. .+..++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE---AFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChh---hccCCCCCCEEECCCC-cCCcCCHHHhCCCc
Confidence 35789999985 67777744 44 89999999999964 7777753 6889999999999985 4777775 477899
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|+.|+++++.
T Consensus 113 ~L~~L~L~~N~ 123 (361)
T 2xot_A 113 ALEVLLLYNNH 123 (361)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 99999999876
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.70 E-value=1.7e-07 Score=67.74 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=68.2
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~ 79 (133)
+++++|+++++ .++.+|. .+.++++|++|+++++..++.+|.+ .+..++++.++.+.+++.+..+| ..+..+++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChh---HhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 47899999994 7888985 4689999999999998766777763 56778888887777778888885 45678899
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|+++++.
T Consensus 106 L~~L~l~~n~ 115 (350)
T 4ay9_X 106 LQYLLISNTG 115 (350)
T ss_dssp CCEEEEEEEC
T ss_pred cccccccccc
Confidence 9999998765
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.70 E-value=1.3e-07 Score=72.18 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=63.9
Q ss_pred CCccEEeecCCCCCccCC---ccCCCCCCccEEEeccCCCCccccccccccCCCC----------------------CCc
Q 048450 2 PRLSSLTVGSCNKLKALP---DYLLQTTALQELSICSCDLLEELPILEDRRTTDI----------------------PRL 56 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp---~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l----------------------~~L 56 (133)
++|++|+++++ .+..++ ..++.+++|+.|+++++.-...+|.. .+..+ ++|
T Consensus 377 ~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L 452 (562)
T 3a79_B 377 KRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAESILVLNLSSNMLTGSVFRCLPPKV 452 (562)
T ss_dssp SSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred CCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence 56667777664 444333 34566666666666665422224431 12222 467
Q ss_pred cEEeecCCCCCCccCcCCCCCCCccEEEEecCchhHHhhcCCCCCC-CcccCCCCceEEcCcccee
Q 048450 57 TSLWISDCPNLKVLPDYLLQTTTLQELTIHRCPLLENRYREGKGED-WHKISHIPHIKWSITRWCC 121 (133)
Q Consensus 57 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~-~~~i~~l~~l~~~~~~~~~ 121 (133)
++|+++++ .++.+|..+..+++|++|+++++. +.. .+.. +..+.++..+.+.++++.+
T Consensus 453 ~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~-----l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 453 KVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKS-----VPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCC-----CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCC-----CCHHHHhcCCCCCEEEecCCCcCC
Confidence 77777664 466777777777888888888765 221 1222 4566677778888776644
No 91
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.69 E-value=8.4e-08 Score=73.53 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=78.2
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCcc-CcCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVL-PDYLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~ 78 (133)
+++|++|+++++.-..-.|..++.+++|++|+++++. +..+ |. .++.+++|++|+++++. +..+ |..+..++
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAET----ALSGPKALKHLFFIQTG-ISSIDFIPLHNQK 129 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTT----TTSSCTTCCEEECTTSC-CSCGGGSCCTTCT
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccChh----hhcccccccEeeccccC-cccCCcchhccCC
Confidence 4789999999974444346678999999999999976 5454 55 78999999999999865 6565 56688899
Q ss_pred CccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450 79 TLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT 117 (133)
Q Consensus 79 ~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~ 117 (133)
+|++|+++++..-. .....+..+.++..+.+.++
T Consensus 130 ~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 130 TLESLYLGSNHISS-----IKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp TCCEEECCSSCCCC-----CCCCTTCCCTTCCEEECCSS
T ss_pred cccEEECCCCcccc-----cCcccccCCcccCEEEcccC
Confidence 99999999876211 11122333667777777664
No 92
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.69 E-value=6.3e-09 Score=68.86 Aligned_cols=86 Identities=14% Similarity=0.277 Sum_probs=59.5
Q ss_pred CccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccCCCC----CCccEEeecCCCCCCccC-cCCCC
Q 048450 3 RLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRTTDI----PRLTSLWISDCPNLKVLP-DYLLQ 76 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l----~~L~~L~l~~c~~l~~lp-~~~~~ 76 (133)
+|+.|++++|. +...- ..+..+++|+.|++++|..++.-... .+..+ ++|++|++++|+.++.-- ..+.+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~---~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE---RLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH---HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH---HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 47889999885 54322 34567889999999999877653221 34443 368999999998776521 12446
Q ss_pred CCCccEEEEecCchhH
Q 048450 77 TTTLQELTIHRCPLLE 92 (133)
Q Consensus 77 l~~L~~L~i~~c~~l~ 92 (133)
+++|++|++++|+.++
T Consensus 138 ~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CTTCCEEEEESCTTCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 7889999999998665
No 93
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=9.3e-08 Score=68.71 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=75.8
Q ss_pred EEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCccEEE
Q 048450 6 SLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELT 84 (133)
Q Consensus 6 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 84 (133)
.++.++.+.+..+|. +..+++|+.|++++...+..++.+ .++.+++|+.|+++++ .+..+|. .+.++++|+.|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEe
Confidence 356666437888998 999999999999974568888853 7899999999999985 5777765 568899999999
Q ss_pred EecCchhHHhhcCCCCCCCcccCCCCceEEcCccce
Q 048450 85 IHRCPLLENRYREGKGEDWHKISHIPHIKWSITRWC 120 (133)
Q Consensus 85 i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 120 (133)
++++. +.... ...+..+. +..|.+.++.+-
T Consensus 87 l~~N~-l~~~~----~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNA-LESLS----WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSSC-CSCCC----STTTCSCC-CCEEECCSSCCC
T ss_pred CCCCc-cceeC----HHHcccCC-ceEEEeeCCCcc
Confidence 99875 32111 11122222 677777776553
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.68 E-value=8.7e-08 Score=68.16 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=42.4
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++ .+..++. +..+++|+.|+++++. +..++ .+..+++|++|+++++. +..++. +..+++|+
T Consensus 63 ~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~ 132 (308)
T 1h6u_A 63 NNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-----AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQ 132 (308)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-----GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCC
T ss_pred CCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-----hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCC
Confidence 45666666654 4445554 5566666666666643 44443 24556666666665543 444443 45555666
Q ss_pred EEEEecC
Q 048450 82 ELTIHRC 88 (133)
Q Consensus 82 ~L~i~~c 88 (133)
+|+++++
T Consensus 133 ~L~l~~n 139 (308)
T 1h6u_A 133 VLYLDLN 139 (308)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666554
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.67 E-value=5.1e-08 Score=74.01 Aligned_cols=83 Identities=27% Similarity=0.433 Sum_probs=68.9
Q ss_pred CCCccEEeecCCCCC-ccCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccC-cCCCCC
Q 048450 1 MPRLSSLTVGSCNKL-KALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l 77 (133)
+++|++|++++|... ..+|..+..+++|+.|++++|. +..+ |. .++.+++|++|++++|. +..+| ..+..+
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 517 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT----AFNSLSSLQVLNMASNQ-LKSVPDGIFDRL 517 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChh----hhhcccCCCEEeCCCCc-CCCCCHHHhhcc
Confidence 478999999997543 3688888999999999999986 5555 66 78899999999999965 66665 457889
Q ss_pred CCccEEEEecCc
Q 048450 78 TTLQELTIHRCP 89 (133)
Q Consensus 78 ~~L~~L~i~~c~ 89 (133)
++|+.|++++++
T Consensus 518 ~~L~~L~l~~N~ 529 (570)
T 2z63_A 518 TSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCcEEEecCCc
Confidence 999999999876
No 96
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.67 E-value=1.8e-07 Score=69.81 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=66.6
Q ss_pred CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450 2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT 78 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 78 (133)
+++++|+++++ .+..++ ..+..+++|+.|+++++. +..+ |. .++.+++|++|+++++ .++.+|.. +.+++
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPG----AFNNLFNLRTLGLRSN-RLKLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECCSS-CCCSCCTTSSTTCT
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChh----hhhCCccCCEEECCCC-cCCccCcccccCCC
Confidence 46899999996 566664 578899999999999974 6666 55 7899999999999985 47788764 67899
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|++|+++++.
T Consensus 105 ~L~~L~Ls~n~ 115 (477)
T 2id5_A 105 NLTKLDISENK 115 (477)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEECCCCc
Confidence 99999999875
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.67 E-value=4.5e-08 Score=69.78 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=42.7
Q ss_pred CCccEEeecCCCCCccCC-ccC-CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALP-DYL-LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
++|++|+++++ .+..++ ..+ ..+++|+.|+++++. +..++. ...+++|++|+++++ .+..+|..+..+++
T Consensus 144 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-----QVVFAKLKTLDLSSN-KLAFMGPEFQSAAG 215 (317)
T ss_dssp SSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-----CCCCTTCCEEECCSS-CCCEECGGGGGGTT
T ss_pred CCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc-----ccccccCCEEECCCC-cCCcchhhhcccCc
Confidence 45667777664 333332 223 345666666666643 555543 223556666666553 34555555555555
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|+.|+++++.
T Consensus 216 L~~L~L~~N~ 225 (317)
T 3o53_A 216 VTWISLRNNK 225 (317)
T ss_dssp CSEEECTTSC
T ss_pred ccEEECcCCc
Confidence 6666665543
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.66 E-value=1.6e-07 Score=67.08 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=53.2
Q ss_pred CccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 3 RLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
+|++|+++++ .+..+ |..+..+++|+.|+++++. +..++.. .+..+++|++|+++++ .+..+|.++..+++|+
T Consensus 193 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 193 SLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG---SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQ 266 (330)
T ss_dssp TCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEECTT---TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCC
T ss_pred cCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CceeChh---hccCCCCCCEEECCCC-cCccCChhhccCCCcC
Confidence 4556666654 23333 3456677777777777754 5555432 5666778888888775 4667777777777888
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
+|+++++.
T Consensus 267 ~L~l~~N~ 274 (330)
T 1xku_A 267 VVYLHNNN 274 (330)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 88887765
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.65 E-value=3e-08 Score=71.13 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=59.3
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++|++|++++| .+..++. +..+++|+.|+++++. +..++ .+..+++|++|++++| .+..++ .+..+++|
T Consensus 220 ~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L 289 (347)
T 4fmz_A 220 MTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQ-ISDIN-----AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQL 289 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTC
T ss_pred CCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCc-cCCCh-----hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCC
Confidence 467889999886 5666664 7788889999998864 66664 4677888888888886 466664 45677888
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
+.|++++|.
T Consensus 290 ~~L~L~~n~ 298 (347)
T 4fmz_A 290 NSLFLNNNQ 298 (347)
T ss_dssp SEEECCSSC
T ss_pred CEEECcCCc
Confidence 888888875
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.65 E-value=5.7e-08 Score=69.22 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=55.0
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccccccccccC-CCCCCccEEeecCCCCCCccCcCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEELPILEDRRT-TDIPRLTSLWISDCPNLKVLPDYLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~l~ 78 (133)
+++|++|+++++ .+..++ ..++.+++|+.|+++++. +..++.. .+ +.+++|++|+++++. ++.+|... .++
T Consensus 119 ~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~-~l~ 191 (317)
T 3o53_A 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA---ELAASSDTLEHLNLQYNF-IYDVKGQV-VFA 191 (317)
T ss_dssp CSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGG---GGGGGTTTCCEEECTTSC-CCEEECCC-CCT
T ss_pred cCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHH---HHhhccCcCCEEECCCCc-Cccccccc-ccc
Confidence 357888888885 455554 456677888888888864 5554321 33 357888888888754 66665433 477
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|++|+++++.
T Consensus 192 ~L~~L~Ls~N~ 202 (317)
T 3o53_A 192 KLKTLDLSSNK 202 (317)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 88888888764
No 101
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.64 E-value=2.4e-07 Score=66.19 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=44.2
Q ss_pred CCccEEeecCCCCCccCC-ccCCCCCCccEEEeccCCCCccc-cccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALP-DYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
++|++|+++++ .+..++ ..+..+++|++|+++++. +..+ |. .++.+++|++|+++++ .++.+|..+. ++
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEK----AFSPLRKLQKLYISKN-HLVEIPPNLP--SS 124 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGG----GSTTCTTCCEEECCSS-CCCSCCSSCC--TT
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHh----HhhCcCCCCEEECCCC-cCCccCcccc--cc
Confidence 35666666664 344443 345666667777776654 4444 33 5666666666666653 3555555443 45
Q ss_pred ccEEEEecC
Q 048450 80 LQELTIHRC 88 (133)
Q Consensus 80 L~~L~i~~c 88 (133)
|++|+++++
T Consensus 125 L~~L~l~~n 133 (332)
T 2ft3_A 125 LVELRIHDN 133 (332)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555554
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.62 E-value=6.4e-08 Score=73.06 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=16.8
Q ss_pred CCCccEEeecCCCCCCccCcCCCCCCCccEEEEecC
Q 048450 53 IPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRC 88 (133)
Q Consensus 53 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c 88 (133)
+++|+.|+++++ .+..+|..+..+++|+.|+++++
T Consensus 190 l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred CCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC
Confidence 444555555442 24444444444455555555544
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.61 E-value=1.5e-07 Score=66.43 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=26.5
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~ 63 (133)
++|++|+++++ .+..+| .+..+++|+.|+++++. +..++ .+..+++|++|++++
T Consensus 90 ~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~-i~~~~-----~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 90 KNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNG-ISDIN-----GLVHLPQLESLYLGN 143 (291)
T ss_dssp TTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSC-CCCCG-----GGGGCTTCCEEECCS
T ss_pred CCCCEEECCCC-cCCCCh-hhccCCCCCEEECCCCc-CCCCh-----hhcCCCCCCEEEccC
Confidence 45666666664 344444 35555556666655542 43332 233444444444444
No 104
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.61 E-value=2.2e-07 Score=66.36 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccC-cCCCCCCCccEEEEecCc
Q 048450 26 TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLP-DYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 26 ~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~i~~c~ 89 (133)
++|+.|+++++. +..++.. .++.+++|++|+++++. +..++ ..+..+++|++|+++++.
T Consensus 192 ~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDAA---SLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp TTCSEEECTTSC-CCEECTG---GGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred ccCCEEECCCCc-CCccCHH---HhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 344444444433 3333211 55666777777776644 44444 345666777777777664
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.60 E-value=2.2e-07 Score=69.46 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=52.8
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++|++|+++++ .+..+|+ +..+++|++|++.++. +..++. ++.+++|++|++++| .+..++. +..+++|
T Consensus 67 l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 67 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-----LANLTNLTGLTLFNN-QITDIDP-LKNLTNL 136 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GTTCTTC
T ss_pred hcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-----hcCCCCCCEEECCCC-CCCCChH-HcCCCCC
Confidence 356777777775 4555654 6677777777777753 555543 566777888888775 3556654 6677788
Q ss_pred cEEEEecCc
Q 048450 81 QELTIHRCP 89 (133)
Q Consensus 81 ~~L~i~~c~ 89 (133)
++|++++|.
T Consensus 137 ~~L~l~~n~ 145 (466)
T 1o6v_A 137 NRLELSSNT 145 (466)
T ss_dssp SEEEEEEEE
T ss_pred CEEECCCCc
Confidence 888877664
No 106
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.60 E-value=3.4e-07 Score=65.46 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=64.5
Q ss_pred CCCccEEeecCCCCCccC-CccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKAL-PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~ 78 (133)
+++|++|+++++ .+..+ |..++.+++|++|+++++. +..+|. .+. ++|++|+++++. ++.+|.. +..++
T Consensus 77 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~----~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~ 147 (332)
T 2ft3_A 77 LQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPP----NLP--SSLVELRIHDNR-IRKVPKGVFSGLR 147 (332)
T ss_dssp CTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCS----SCC--TTCCEEECCSSC-CCCCCSGGGSSCS
T ss_pred CCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCc----ccc--ccCCEEECCCCc-cCccCHhHhCCCc
Confidence 468999999997 45555 6678999999999999964 778887 554 789999998854 6677654 67889
Q ss_pred CccEEEEecCc
Q 048450 79 TLQELTIHRCP 89 (133)
Q Consensus 79 ~L~~L~i~~c~ 89 (133)
+|+.|+++++.
T Consensus 148 ~L~~L~l~~n~ 158 (332)
T 2ft3_A 148 NMNCIEMGGNP 158 (332)
T ss_dssp SCCEEECCSCC
T ss_pred cCCEEECCCCc
Confidence 99999998875
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.60 E-value=5.5e-08 Score=70.27 Aligned_cols=81 Identities=23% Similarity=0.221 Sum_probs=41.0
Q ss_pred ccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccEE
Q 048450 4 LSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQEL 83 (133)
Q Consensus 4 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 83 (133)
++.|+++++ .++.+|..+...++|+.+.+.++..++.+|.+ .++.+++|++|+++++ .++.+|.+. +.+|+.|
T Consensus 156 l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~---~f~~l~~L~~LdLs~N-~l~~lp~~~--~~~L~~L 228 (350)
T 4ay9_X 156 SVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDISRT-RIHSLPSYG--LENLKKL 228 (350)
T ss_dssp CEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT---TTTTEECCSEEECTTS-CCCCCCSSS--CTTCCEE
T ss_pred hhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH---HhccCcccchhhcCCC-CcCccChhh--hccchHh
Confidence 444555542 44555544444455555555555555555542 3455566666666553 355555432 3345555
Q ss_pred EEecCchh
Q 048450 84 TIHRCPLL 91 (133)
Q Consensus 84 ~i~~c~~l 91 (133)
.+.++..+
T Consensus 229 ~~l~~~~l 236 (350)
T 4ay9_X 229 RARSTYNL 236 (350)
T ss_dssp ECTTCTTC
T ss_pred hhccCCCc
Confidence 55444433
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=2.5e-07 Score=64.45 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=16.0
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSC 36 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c 36 (133)
++|++|+++++ .+..+++ +..+++|+.|+++++
T Consensus 63 ~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 63 TNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS
T ss_pred CCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC
Confidence 34555555543 3444443 445555555555553
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.59 E-value=5e-09 Score=74.81 Aligned_cols=37 Identities=35% Similarity=0.404 Sum_probs=15.6
Q ss_pred CCCccEEeecCCCCCC-ccCcCCCCCCCccEEEEecCc
Q 048450 53 IPRLTSLWISDCPNLK-VLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 53 l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~i~~c~ 89 (133)
+++|++|++++|..++ ..+..+..+++|++|++++|.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 4444444444443222 223333444445555554443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.59 E-value=2.6e-07 Score=64.41 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=64.2
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTL 80 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 80 (133)
+++|++|+++++ .+..+|.. .. ++|+.|+++++. +..++ .++.+++|++|+++++ .++.++ .+..+++|
T Consensus 84 l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~L~L~~N~-l~~~~-----~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L 152 (263)
T 1xeu_A 84 LTKLEELSVNRN-RLKNLNGI-PS-ACLSRLFLDNNE-LRDTD-----SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKL 152 (263)
T ss_dssp CSSCCEEECCSS-CCSCCTTC-CC-SSCCEEECCSSC-CSBSG-----GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTC
T ss_pred CCCCCEEECCCC-ccCCcCcc-cc-CcccEEEccCCc-cCCCh-----hhcCcccccEEECCCC-cCCCCh-HHccCCCC
Confidence 467888888885 66667643 23 788888888864 66664 4677888888888774 466665 46677788
Q ss_pred cEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCc
Q 048450 81 QELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSIT 117 (133)
Q Consensus 81 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~ 117 (133)
+.|+++++. +... ..+..+.++..+.+.++
T Consensus 153 ~~L~L~~N~-i~~~------~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 153 EVLDLHGNE-ITNT------GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECTTSC-CCBC------TTSTTCCCCCEEEEEEE
T ss_pred CEEECCCCc-Ccch------HHhccCCCCCEEeCCCC
Confidence 888887765 1110 22334555555555543
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.58 E-value=1.9e-07 Score=65.96 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=47.8
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++ .+..+++ +..+++|+.|+++++. +..++ .++.+++|++|+++++. +..++ .+..+++|+
T Consensus 68 ~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 68 PNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-----SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLE 137 (291)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-----GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCC
T ss_pred CCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-----hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCC
Confidence 55666666664 4455554 5666677777776653 55554 36667777777777643 55553 355666777
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
.|+++++.
T Consensus 138 ~L~l~~n~ 145 (291)
T 1h6t_A 138 SLYLGNNK 145 (291)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 77776653
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.58 E-value=1.7e-07 Score=66.61 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=16.9
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSC 36 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c 36 (133)
++|++|+++++ .+..++ .+..+++|+.|+++++
T Consensus 85 ~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 85 TKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp CSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC
Confidence 45566666554 344443 3445555555555554
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.56 E-value=7.4e-09 Score=73.93 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=37.4
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcc--ccccccccCCCCCCccEEeecCCCCCCc--cCcCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEE--LPILEDRRTTDIPRLTSLWISDCPNLKV--LPDYLLQT 77 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l 77 (133)
++|++|++++|......+..+..+++|+.|++++|..+.. ++. .++.+++|++|++++|..+.. ++..+..+
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 3455555555432222333344455555555555533331 333 233455555555555433332 33333444
Q ss_pred C-CccEEEEecC
Q 048450 78 T-TLQELTIHRC 88 (133)
Q Consensus 78 ~-~L~~L~i~~c 88 (133)
+ +|++|++++|
T Consensus 194 ~~~L~~L~l~~~ 205 (336)
T 2ast_B 194 SETITQLNLSGY 205 (336)
T ss_dssp CTTCCEEECCSC
T ss_pred ccCCCEEEeCCC
Confidence 4 5555555555
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.56 E-value=2.5e-07 Score=71.69 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|+.|+|+++ .+..+++ +..+++|+.|++++|. +..+| .+..+++|+.|+++++. +..++ .+..+++|+
T Consensus 65 ~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-----~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~ 134 (605)
T 1m9s_A 65 PNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-----SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLE 134 (605)
T ss_dssp TTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-----TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCS
T ss_pred CCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-----hhccCCCCCEEEecCCC-CCCCc-cccCCCccC
Confidence 45566666554 3444443 4555555555555542 44433 24445555555555432 33332 233444455
Q ss_pred EEEEecC
Q 048450 82 ELTIHRC 88 (133)
Q Consensus 82 ~L~i~~c 88 (133)
.|++++|
T Consensus 135 ~L~Ls~N 141 (605)
T 1m9s_A 135 SLYLGNN 141 (605)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5544443
No 115
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.54 E-value=4.5e-07 Score=70.40 Aligned_cols=84 Identities=23% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
+++|++|+++++ .+..+|. .++.+++|++|+++++. +..++.. .++.+++|++|+++++......|..+.++++
T Consensus 72 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 72 LPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNN---PFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSC---TTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred ccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChh---HccccCCCCEEECCCCcccccCchhhccccc
Confidence 468999999986 6777885 47899999999999875 6677642 6888999999999987654445666778889
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|+++++.
T Consensus 147 L~~L~L~~n~ 156 (680)
T 1ziw_A 147 LQELLLSNNK 156 (680)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCc
Confidence 9999988763
No 116
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.54 E-value=1.5e-07 Score=71.09 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=62.5
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++ .+..+| ....+++|+.|+++++. +..+|. .++.+++|+.|+++++ .+..+|..+..+++|+
T Consensus 169 ~~L~~L~Ls~N-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 169 DTLEHLNLQYN-FIYDVK-GQVVFAKLKTLDLSSNK-LAFMGP----EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLE 240 (487)
T ss_dssp TTCCEEECTTS-CCCEEE-CCCCCTTCCEEECCSSC-CCEECG----GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCC
T ss_pred CcccEEecCCC-cccccc-ccccCCCCCEEECCCCC-CCCCCH----hHcCCCCccEEEecCC-cCcccchhhccCCCCC
Confidence 55666666664 344444 23357788888888754 777877 7888999999999985 5778999998999999
Q ss_pred EEEEecCchh
Q 048450 82 ELTIHRCPLL 91 (133)
Q Consensus 82 ~L~i~~c~~l 91 (133)
.|++++++..
T Consensus 241 ~L~l~~N~l~ 250 (487)
T 3oja_A 241 HFDLRGNGFH 250 (487)
T ss_dssp EEECTTCCBC
T ss_pred EEEcCCCCCc
Confidence 9999987643
No 117
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.53 E-value=6.7e-07 Score=63.41 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCccEEeecCCCCCccCCccC--CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPDYL--LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 79 (133)
++|++|+++++......|..+ ..+++|+.|+++++.-....+.-....+..+++|++|+++++......|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 468899999875555566555 788889999998875333222100003446888888888886643333456778888
Q ss_pred ccEEEEecCc
Q 048450 80 LQELTIHRCP 89 (133)
Q Consensus 80 L~~L~i~~c~ 89 (133)
|++|+++++.
T Consensus 171 L~~L~Ls~N~ 180 (310)
T 4glp_A 171 LTSLDLSDNP 180 (310)
T ss_dssp CCEEECCSCT
T ss_pred CCEEECCCCC
Confidence 8888888876
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.51 E-value=3.5e-07 Score=70.90 Aligned_cols=55 Identities=24% Similarity=0.397 Sum_probs=28.1
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~ 63 (133)
+++|+.|+++++ .+..+| .+..+++|+.|+++++. +..++ .+..+++|+.|++++
T Consensus 86 l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-----~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 86 LKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-----GLVHLPQLESLYLGN 140 (605)
T ss_dssp CTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-----GGGGCTTCSEEECCS
T ss_pred CCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-----cccCCCccCEEECCC
Confidence 356666666664 444444 45556666666665543 43332 233444444444444
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.45 E-value=1.8e-06 Score=64.65 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=19.9
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSC 36 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c 36 (133)
+++|++|+++++ .+..+| ++.+++|+.|+++++
T Consensus 105 l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS
T ss_pred CCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC
Confidence 356777777764 444454 556666666666664
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.45 E-value=4.6e-07 Score=64.25 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=75.1
Q ss_pred CCCccEEeecCCCCCccCCcc----CCCCCCccEEEeccCCCCccc-cccccccCCCC---CCccEEeecCCCCCCccCc
Q 048450 1 MPRLSSLTVGSCNKLKALPDY----LLQTTALQELSICSCDLLEEL-PILEDRRTTDI---PRLTSLWISDCPNLKVLPD 72 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l---~~L~~L~l~~c~~l~~lp~ 72 (133)
+++|++|++++| .+..++.. ++.+++|+.|+++++. +..+ |. .++.+ ++|++|+++++ .++.+|.
T Consensus 196 l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~----~~~~~~~~~~L~~L~Ls~N-~l~~lp~ 268 (310)
T 4glp_A 196 FPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNP----SAPRCMWSSALNSLNLSFA-GLEQVPK 268 (310)
T ss_dssp SCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCS----CCSSCCCCTTCCCEECCSS-CCCSCCS
T ss_pred CCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchh----hHHhccCcCcCCEEECCCC-CCCchhh
Confidence 468999999996 56655532 4678999999999976 5554 66 56655 69999999885 5778998
Q ss_pred CCCCCCCccEEEEecCchhHHhhcCCCCCCCcccCCCCceEEcCccc
Q 048450 73 YLLQTTTLQELTIHRCPLLENRYREGKGEDWHKISHIPHIKWSITRW 119 (133)
Q Consensus 73 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 119 (133)
.+. ++|+.|+++++. +.. . +....++++..|.+.+++.
T Consensus 269 ~~~--~~L~~L~Ls~N~-l~~-----~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 269 GLP--AKLRVLDLSSNR-LNR-----A-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCC--SCCSCEECCSCC-CCS-----C-CCTTSCCCCSCEECSSTTT
T ss_pred hhc--CCCCEEECCCCc-CCC-----C-chhhhCCCccEEECcCCCC
Confidence 775 799999999876 221 1 1234567778888776643
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.44 E-value=2e-06 Score=64.37 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=25.2
Q ss_pred CCCCCCccEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450 50 TTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 50 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
++.+++|++|+++++ .+..+| +..+++|+.|+++++.
T Consensus 208 l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred cccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc
Confidence 455677777777764 355666 5667777888777664
No 122
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.44 E-value=1.7e-07 Score=66.57 Aligned_cols=83 Identities=27% Similarity=0.331 Sum_probs=46.7
Q ss_pred CCccEEeecCCCCCccCCccCCCC-----CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc--cCcCC
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQT-----TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV--LPDYL 74 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l-----~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~ 74 (133)
++|++|+++++ .+..+|..++.+ ++|++|+++++. +..++.. .++.+++|++|+++++...+. +|..+
T Consensus 121 ~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 121 PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCE---QVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTT---TCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHH---HhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 56677777764 444445444444 667777776654 4444421 566666777777766543332 22222
Q ss_pred --CCCCCccEEEEecCc
Q 048450 75 --LQTTTLQELTIHRCP 89 (133)
Q Consensus 75 --~~l~~L~~L~i~~c~ 89 (133)
..+++|++|+++++.
T Consensus 196 ~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAG 212 (312)
T ss_dssp CTTSCTTCCEEECTTSC
T ss_pred HhccCCCCCEEECCCCc
Confidence 455666666666553
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.35 E-value=1.6e-06 Score=64.79 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=5.2
Q ss_pred CCCCccEEeecC
Q 048450 52 DIPRLTSLWISD 63 (133)
Q Consensus 52 ~l~~L~~L~l~~ 63 (133)
.+++|+.|++++
T Consensus 307 ~l~~L~~L~L~~ 318 (466)
T 1o6v_A 307 NLKNLTYLTLYF 318 (466)
T ss_dssp GCTTCSEEECCS
T ss_pred CCCCCCEEECcC
Confidence 344444444444
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.24 E-value=3.1e-06 Score=65.85 Aligned_cols=74 Identities=27% Similarity=0.405 Sum_probs=39.9
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|++|+++++ .+..+| ..+++|+.|+++++ .+..+|. .+++|+.|++++| .+..+|..+.++++|+.
T Consensus 222 ~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTRLPESLIHLSSETT 288 (622)
T ss_dssp TCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred CCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence 3444444442 333343 23345555555553 2444443 3456666766664 35566666666677777
Q ss_pred EEEecCc
Q 048450 83 LTIHRCP 89 (133)
Q Consensus 83 L~i~~c~ 89 (133)
|++++++
T Consensus 289 L~L~~N~ 295 (622)
T 3g06_A 289 VNLEGNP 295 (622)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 7777664
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.22 E-value=5.7e-06 Score=61.89 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=48.1
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++ .+..+| .++.+++|++|+++++. ++.+|. . +++|++|+++++ .+..+| .+..+++|+
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~----~---~~~L~~L~L~~n-~l~~l~-~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD----L---PPSLEFIAAGNN-QLEELP-ELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCC----C---CTTCCEEECCSS-CCSSCC-CCTTCTTCC
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc-CcccCC----C---cccccEEECcCC-cCCcCc-cccCCCCCC
Confidence 36777777775 455577 57777788888887753 656665 2 246666666664 355565 455666666
Q ss_pred EEEEecCc
Q 048450 82 ELTIHRCP 89 (133)
Q Consensus 82 ~L~i~~c~ 89 (133)
+|+++++.
T Consensus 199 ~L~l~~N~ 206 (454)
T 1jl5_A 199 AIYADNNS 206 (454)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66666553
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.21 E-value=5.1e-09 Score=69.96 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=38.9
Q ss_pred CCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCcc
Q 048450 2 PRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQ 81 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 81 (133)
++|++|+++++ .+..+| .+..+++|+.|+++++. +..+|. .++.+++|++|+++++ .+..+| .+..+++|+
T Consensus 48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~----~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIEN----LDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSS----HHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccc----hhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 45666666654 344455 55556666666666543 445554 3334455555555543 233333 233334444
Q ss_pred EEEEecC
Q 048450 82 ELTIHRC 88 (133)
Q Consensus 82 ~L~i~~c 88 (133)
.|+++++
T Consensus 119 ~L~l~~N 125 (198)
T 1ds9_A 119 VLYMSNN 125 (198)
T ss_dssp EEEESEE
T ss_pred EEECCCC
Confidence 4444443
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.17 E-value=2.5e-05 Score=60.81 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=18.4
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCcccc
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELP 43 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 43 (133)
+|++|+++++ .+..+|. .+++|+.|+++++. ++.+|
T Consensus 62 ~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp 97 (622)
T 3g06_A 62 HITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLP 97 (622)
T ss_dssp TCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCC
T ss_pred CCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCC
Confidence 4555666554 4445553 34555555555543 44444
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.15 E-value=1.5e-08 Score=67.65 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=66.6
Q ss_pred CCCccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc--CCCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD--YLLQTT 78 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~ 78 (133)
+++|++|+++++ .+..+|..+..+++|+.|+++++ .+..+|. ++.+++|++|+++++ .+..+|. .+..++
T Consensus 69 l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~-----~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 69 MENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSG-----IEKLVNLRVLYMSNN-KITNWGEIDKLAALD 140 (198)
T ss_dssp HTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHHH-----HHHHHHSSEEEESEE-ECCCHHHHHHHTTTT
T ss_pred CCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCCc-----cccCCCCCEEECCCC-cCCchhHHHHHhcCC
Confidence 368999999996 67788877777899999999997 4777763 667899999999985 4666654 577889
Q ss_pred CccEEEEecCch
Q 048450 79 TLQELTIHRCPL 90 (133)
Q Consensus 79 ~L~~L~i~~c~~ 90 (133)
+|++|++++++-
T Consensus 141 ~L~~L~l~~N~l 152 (198)
T 1ds9_A 141 KLEDLLLAGNPL 152 (198)
T ss_dssp TCSEEEECSCHH
T ss_pred CCCEEEecCCcc
Confidence 999999999863
No 129
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=7.1e-07 Score=59.00 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=50.5
Q ss_pred CCCccEEeecCCCCCccCC-ccCCCC----CCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLKALP-DYLLQT----TALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKV 69 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp-~~~~~l----~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~ 69 (133)
+++|++|++++|..+++-- ..+..+ ++|+.|++++|++++.-... .+..+++|++|++++|+.++.
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhcCCCCCEEECCCCCCCCc
Confidence 5789999999998776532 223343 37999999999988764322 566799999999999998765
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.10 E-value=6.6e-06 Score=63.44 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=19.1
Q ss_pred cEEeecCCCCCCccCcCCCCCCCccEEEEecCc
Q 048450 57 TSLWISDCPNLKVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 57 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
+.|+++++ .++.+|..+..+++|+.|++++++
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred eEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 66666553 355566655556666666666654
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.07 E-value=1.9e-05 Score=59.11 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=34.6
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|++|+++++ .+..+| .++.+++|+.|+++++. +..+|. . .++|++|+++++ .+..+|. +..+++|++
T Consensus 174 ~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~----~---~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~ 241 (454)
T 1jl5_A 174 SLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNS-LKKLPD----L---PLSLESIVAGNN-ILEELPE-LQNLPFLTT 241 (454)
T ss_dssp TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSSCCC----C---CTTCCEEECCSS-CCSSCCC-CTTCTTCCE
T ss_pred cccEEECcCC-cCCcCc-cccCCCCCCEEECCCCc-CCcCCC----C---cCcccEEECcCC-cCCcccc-cCCCCCCCE
Confidence 3444444443 333344 34555555555555543 333433 1 134555555543 2345552 445555566
Q ss_pred EEEecC
Q 048450 83 LTIHRC 88 (133)
Q Consensus 83 L~i~~c 88 (133)
|+++++
T Consensus 242 L~l~~N 247 (454)
T 1jl5_A 242 IYADNN 247 (454)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 655554
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.03 E-value=1.8e-05 Score=61.02 Aligned_cols=70 Identities=26% Similarity=0.354 Sum_probs=37.9
Q ss_pred CccEEeecCCCCCccCCccCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcCCCCCCCccE
Q 048450 3 RLSSLTVGSCNKLKALPDYLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTTTLQE 82 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 82 (133)
+|++|+++++ .+..+|. .+++|+.|+++++. +..+|. .+++|++|+++++ .++.+|. +. ++|+.
T Consensus 121 ~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 121 SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEA 184 (571)
T ss_dssp TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSCCCC-CC--TTCCE
T ss_pred CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCC-CCCCcch-hh--CCCCE
Confidence 3455555553 3444553 45566666666643 444543 2456666666664 3555665 43 56666
Q ss_pred EEEecC
Q 048450 83 LTIHRC 88 (133)
Q Consensus 83 L~i~~c 88 (133)
|+++++
T Consensus 185 L~Ls~N 190 (571)
T 3cvr_A 185 LDVSTN 190 (571)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 666655
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.97 E-value=7e-07 Score=65.04 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=55.8
Q ss_pred CCCccEEeecCCCCCc------cCCccCCCCCCccEEEeccCCCC-----ccccccccccCCCCCCccEEeecCCCCCCc
Q 048450 1 MPRLSSLTVGSCNKLK------ALPDYLLQTTALQELSICSCDLL-----EELPILEDRRTTDIPRLTSLWISDCPNLKV 69 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~------~lp~~~~~l~~L~~L~l~~c~~l-----~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~ 69 (133)
+++|++|++++| .+. -+|..+..+++|+.|++++|. + ..+|. .+..+++|++|++++|. ++.
T Consensus 186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~----~l~~~~~L~~L~L~~n~-i~~ 258 (386)
T 2ca6_A 186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI----ALKSWPNLRELGLNDCL-LSA 258 (386)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH----HGGGCTTCCEEECTTCC-CCH
T ss_pred CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHH----HHccCCCcCEEECCCCC-Cch
Confidence 357888888886 444 122366778888888888865 4 55666 66778888888888765 433
Q ss_pred -----cCcCC--CCCCCccEEEEecCc
Q 048450 70 -----LPDYL--LQTTTLQELTIHRCP 89 (133)
Q Consensus 70 -----lp~~~--~~l~~L~~L~i~~c~ 89 (133)
+|..+ ..+++|+.|++++|.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 34444 336788888888775
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.87 E-value=3e-06 Score=61.71 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=61.2
Q ss_pred CCccEEeecCCCCC-ccCC---ccCCCCCCccEEEeccCCCCc------cccccccccCCCCCCccEEeecCCCCC----
Q 048450 2 PRLSSLTVGSCNKL-KALP---DYLLQTTALQELSICSCDLLE------ELPILEDRRTTDIPRLTSLWISDCPNL---- 67 (133)
Q Consensus 2 ~~L~~L~l~~~~~l-~~lp---~~~~~l~~L~~L~l~~c~~l~------~lp~~~~~~~~~l~~L~~L~l~~c~~l---- 67 (133)
++|++|++++|.-- ..++ ..+..+++|+.|++++|. +. -++. .+..+++|+.|++++|..-
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHH
Confidence 68899999987432 2344 345678899999999874 54 2343 4667889999999886631
Q ss_pred CccCcCCCCCCCccEEEEecCc
Q 048450 68 KVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 68 ~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
..+|..+..+++|++|++++|.
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHccCCCcCEEECCCCC
Confidence 5677777788899999999886
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.84 E-value=1.1e-06 Score=66.99 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCCccEEeecCCCCCccCC---cc------------CCCCCCccEEEeccCCCCccccccccccCC-CCCCccEEeecCC
Q 048450 1 MPRLSSLTVGSCNKLKALP---DY------------LLQTTALQELSICSCDLLEELPILEDRRTT-DIPRLTSLWISDC 64 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp---~~------------~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~-~l~~L~~L~l~~c 64 (133)
+++|++|++++|..+..+. .. ...+++|+.|++++|.-....+. .+. .+++|++|++.+|
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE----LIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH----HHHHHCTTCCEEEEESC
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH----HHHHhCCCCcEEeCCCc
Confidence 3567777777765443221 00 12355666777666541111111 221 3556666666665
Q ss_pred CCCCc--cCcCCCCCCCccEEEEecCc
Q 048450 65 PNLKV--LPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 65 ~~l~~--lp~~~~~l~~L~~L~i~~c~ 89 (133)
..++. ++....++++|++|++++|.
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 44333 33222344555666655554
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.00012 Score=52.09 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=56.0
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCcc-EEeecCCCCCCccCc-CCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLT-SLWISDCPNLKVLPD-YLLQTT 78 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~-~L~l~~c~~l~~lp~-~~~~l~ 78 (133)
++|++++++++ .+..+|. .+.++++|+.+++.+. ++.++.. .+..+++|+ .+.+.+ .++.++. .+.+++
T Consensus 226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~---aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR---VFSNCGRLAGTLELPA--SVTAIEFGAFMGCD 297 (329)
T ss_dssp TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTT---TTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHH---HhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence 56788888764 5777774 3567788888888763 7777764 677788888 888865 5777763 466777
Q ss_pred CccEEEEec
Q 048450 79 TLQELTIHR 87 (133)
Q Consensus 79 ~L~~L~i~~ 87 (133)
+|+.+++.+
T Consensus 298 ~L~~l~l~~ 306 (329)
T 3sb4_A 298 NLRYVLATG 306 (329)
T ss_dssp TEEEEEECS
T ss_pred cCCEEEeCC
Confidence 888888754
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=1.5e-05 Score=55.94 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=31.6
Q ss_pred CCCCccEEEeccCCCCcccc---ccccccCCCCCCccEEeecCCCCCCccCcCCCCCC--CccEEEEecCc
Q 048450 24 QTTALQELSICSCDLLEELP---ILEDRRTTDIPRLTSLWISDCPNLKVLPDYLLQTT--TLQELTIHRCP 89 (133)
Q Consensus 24 ~l~~L~~L~l~~c~~l~~lp---~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~--~L~~L~i~~c~ 89 (133)
++++|+.|+++++. +..++ . .++.+++|+.|++++ +.++.+. .+..+. +|++|++.+++
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~----~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSS----IVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTT----HHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCC-CCCCccchh----HHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCc
Confidence 45666677776643 44332 2 333566677777765 3344442 122222 66677776665
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.60 E-value=3.5e-05 Score=58.67 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=10.4
Q ss_pred cCcCCCCCCCccEEEEecCc
Q 048450 70 LPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 70 lp~~~~~l~~L~~L~i~~c~ 89 (133)
+|..+..+++|++|++++|.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC
T ss_pred HHHHHhhcCCCcEEecCCCc
Confidence 34434444556666666554
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.60 E-value=9e-06 Score=61.93 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=18.1
Q ss_pred CCCCccEEeecCCC-CC--CccCcCCCCCCCccEEEEecCc
Q 048450 52 DIPRLTSLWISDCP-NL--KVLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 52 ~l~~L~~L~l~~c~-~l--~~lp~~~~~l~~L~~L~i~~c~ 89 (133)
.+++|++|++++|. .+ ..++..+..+++|++|++++|.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 45566666665543 11 1111111234566777776663
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.50 E-value=0.00011 Score=56.04 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=25.4
Q ss_pred cCCCCCCccEEeecCCCCCCc--cCcCCCCCCCccEEEEecC
Q 048450 49 RTTDIPRLTSLWISDCPNLKV--LPDYLLQTTTLQELTIHRC 88 (133)
Q Consensus 49 ~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~i~~c 88 (133)
.+..+++|++|++++|. +.. ++..+..+++|+.|++.++
T Consensus 288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc
Confidence 34456778888888876 432 2223466788888888743
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.48 E-value=1.5e-05 Score=58.87 Aligned_cols=82 Identities=24% Similarity=0.354 Sum_probs=47.6
Q ss_pred CCccEEeecCCCCCc-----cCCccCCCCCCccEEEeccCCCCccc-cccccccCCCCC----CccEEeecCCCCCC---
Q 048450 2 PRLSSLTVGSCNKLK-----ALPDYLLQTTALQELSICSCDLLEEL-PILEDRRTTDIP----RLTSLWISDCPNLK--- 68 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~l~----~L~~L~l~~c~~l~--- 68 (133)
++|++|++++|. +. .++..+..+++|++|+++++. +... +.. ....++ +|++|++++|. ++
T Consensus 28 ~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~---l~~~l~~~~~~L~~L~L~~n~-i~~~~ 101 (461)
T 1z7x_W 28 QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC---VLQGLQTPSCKIQKLSLQNCC-LTGAG 101 (461)
T ss_dssp TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH---HHHTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred CCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH---HHHHHhhCCCceeEEEccCCC-CCHHH
Confidence 567777777764 33 344455666777777777754 3221 110 011122 57777777765 33
Q ss_pred --ccCcCCCCCCCccEEEEecCc
Q 048450 69 --VLPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 69 --~lp~~~~~l~~L~~L~i~~c~ 89 (133)
.+|..+..+++|++|+++++.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCc
Confidence 456666667777777777765
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.00098 Score=47.41 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=60.7
Q ss_pred CCCccEEeecCCCCCccCCc-cCCCCCCcc-EEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCC
Q 048450 1 MPRLSSLTVGSCNKLKALPD-YLLQTTALQ-ELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQT 77 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~-~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l 77 (133)
+++|+.|++.+. +..++. .+.++++|+ .+.+.+ .++.++.. .+..+++|+.+++.. +.++.++. .+.++
T Consensus 249 ~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~---aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 249 KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG---AFMGCDNLRYVLATG-DKITTLGDELFGNG 320 (329)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT---TTTTCTTEEEEEECS-SCCCEECTTTTCTT
T ss_pred CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh---hhhCCccCCEEEeCC-CccCccchhhhcCC
Confidence 357889998873 777874 467899999 999987 68888764 788899999999976 56888876 46678
Q ss_pred CCccEEE
Q 048450 78 TTLQELT 84 (133)
Q Consensus 78 ~~L~~L~ 84 (133)
++|+.++
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 8888875
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.35 E-value=7.8e-06 Score=60.48 Aligned_cols=84 Identities=32% Similarity=0.447 Sum_probs=44.0
Q ss_pred CccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCccccccc-cccCC-CCCCccEEeecCCCCCC-----cc
Q 048450 3 RLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEELPILE-DRRTT-DIPRLTSLWISDCPNLK-----VL 70 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~-~l~~L~~L~l~~c~~l~-----~l 70 (133)
+|++|++++|. +.. ++..+..+++|+.|+++++. +....... ...+. ..++|++|++++|. ++ .+
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l 390 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL 390 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHH
Confidence 45555555543 221 23334455666666666653 33221100 00111 15577777777764 44 56
Q ss_pred CcCCCCCCCccEEEEecCc
Q 048450 71 PDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 71 p~~~~~l~~L~~L~i~~c~ 89 (133)
|..+..+++|++|++++|+
T Consensus 391 ~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHCCCCCEEECCSSS
T ss_pred HHHHHhCCCccEEECCCCC
Confidence 6666666777777777764
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.19 E-value=1.7e-05 Score=57.41 Aligned_cols=34 Identities=15% Similarity=-0.104 Sum_probs=16.8
Q ss_pred CccEEeecCCCCCCccC-----cCCCCCCCccEEEEecCc
Q 048450 55 RLTSLWISDCPNLKVLP-----DYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 55 ~L~~L~l~~c~~l~~lp-----~~~~~l~~L~~L~i~~c~ 89 (133)
+|++|+++++. ++..+ ..+..+++|+.|++++|.
T Consensus 226 ~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 226 HVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 56666665533 33221 223445566666666554
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.18 E-value=3e-05 Score=56.06 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=18.5
Q ss_pred CccEEeecCCCCCccCC-----ccCCCCC-CccEEEeccC
Q 048450 3 RLSSLTVGSCNKLKALP-----DYLLQTT-ALQELSICSC 36 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp-----~~~~~l~-~L~~L~l~~c 36 (133)
+|++|++++| .+...+ ..+..++ +|+.|++++|
T Consensus 23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN 61 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS
T ss_pred CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC
Confidence 3666666665 344444 2344555 6666666665
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.90 E-value=0.0017 Score=47.26 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=10.1
Q ss_pred CCCCccEEEEecCc
Q 048450 76 QTTTLQELTIHRCP 89 (133)
Q Consensus 76 ~l~~L~~L~i~~c~ 89 (133)
.+++|+.|++.+|.
T Consensus 250 ~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE 263 (362)
T ss_dssp TCTTCCEEEEESCT
T ss_pred CCCCcCEEeCCCCC
Confidence 45778888887765
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.89 E-value=0.00024 Score=51.84 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=15.7
Q ss_pred CCccEEeecCCCCCcc-CCccC--CCCCCccEEEec
Q 048450 2 PRLSSLTVGSCNKLKA-LPDYL--LQTTALQELSIC 34 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~-lp~~~--~~l~~L~~L~l~ 34 (133)
++|++|+|..|. +.. -...+ ..+|+|+.|+++
T Consensus 193 ~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 193 PNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence 567777776543 211 00111 246666666664
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.75 E-value=0.00014 Score=53.10 Aligned_cols=59 Identities=20% Similarity=0.144 Sum_probs=28.0
Q ss_pred CCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEeecCCCCCCc-----cCcCCCCCCCccEEEEecCc
Q 048450 25 TTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWISDCPNLKV-----LPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 25 l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~i~~c~ 89 (133)
.++|+.|++++|. ++. ++. .+...++|++|++++|. ++. ++..+...++|+.|++++|.
T Consensus 154 ~~~L~~L~Ls~n~-l~~~~~~~l~~----~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 154 QCQITTLRLSNNP-LTAAGVAVLME----GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCCCCEEECCSSC-CHHHHHHHHHH----HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CCccceeeCCCCC-CChHHHHHHHH----HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 4556666666653 322 222 23345556666665543 322 22333334455666665553
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.47 E-value=0.0015 Score=45.76 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=50.4
Q ss_pred CCCccEEeecCCCCCccC---CccCCCCCCccEEEeccCCCCccccccccccCCCCC--CccEEeecCCCCCCccCc---
Q 048450 1 MPRLSSLTVGSCNKLKAL---PDYLLQTTALQELSICSCDLLEELPILEDRRTTDIP--RLTSLWISDCPNLKVLPD--- 72 (133)
Q Consensus 1 l~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~--~L~~L~l~~c~~l~~lp~--- 72 (133)
+++|++|+++++ .+..+ |..+..+++|+.|+++++. +..+. .+..+. +|++|++.+++.-..+|.
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-----~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-----ELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-----GGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCch-----hhhhcccCCcceEEccCCcCccccCcchh
Confidence 578899999885 55544 3445678899999998854 66552 233333 889999988775444542
Q ss_pred ----CCCCCCCccEEEE
Q 048450 73 ----YLLQTTTLQELTI 85 (133)
Q Consensus 73 ----~~~~l~~L~~L~i 85 (133)
.+..+++|+.|+-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 1345566666653
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.35 E-value=0.0011 Score=43.62 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=53.0
Q ss_pred CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEeecCCCCCCc--
Q 048450 2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWISDCPNLKV-- 69 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l~~c~~l~~-- 69 (133)
++|++|++++|..+.. +...+...++|+.|++++|. +.. +.. .+...++|++|+++++. ++.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~----~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAE----MLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHH----HHHHCSSCCEEECCSSC-CCHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHH----HHHhCCCcCEEECcCCc-CCHHH
Confidence 5688888888634432 33445566888899998865 432 222 33445778889888754 443
Q ss_pred ---cCcCCCCCCCccEEEE--ecCc
Q 048450 70 ---LPDYLLQTTTLQELTI--HRCP 89 (133)
Q Consensus 70 ---lp~~~~~l~~L~~L~i--~~c~ 89 (133)
+...+...++|++|++ +++.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC
Confidence 4455556678889988 5554
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.17 E-value=0.00046 Score=50.36 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=36.6
Q ss_pred CccEEeecCCCCCccC--CccCCCCCCccEEEeccCCCCcccccccc-ccC-CCCCCccEEeecCCCCCCc-----cCcC
Q 048450 3 RLSSLTVGSCNKLKAL--PDYLLQTTALQELSICSCDLLEELPILED-RRT-TDIPRLTSLWISDCPNLKV-----LPDY 73 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~-~~l~~L~~L~l~~c~~l~~-----lp~~ 73 (133)
+|++|++++|. +..- ..-...+++|+.|++++|. ++....... ..+ ...++|++|++++|. ++. ++..
T Consensus 102 ~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 102 ALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp CEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 56666666652 2211 1111233456666666653 322111000 011 124556666666653 322 3333
Q ss_pred CCCCCCccEEEEecCc
Q 048450 74 LLQTTTLQELTIHRCP 89 (133)
Q Consensus 74 ~~~l~~L~~L~i~~c~ 89 (133)
+...++|++|++++|.
T Consensus 179 L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHTCSSCCEEECTTSS
T ss_pred HhcCCCcCEEeCCCCC
Confidence 3445566666666654
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.98 E-value=0.0011 Score=43.54 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCcc-----ccccccccCCCCCCccEEee--cCCCCCCc
Q 048450 2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEE-----LPILEDRRTTDIPRLTSLWI--SDCPNLKV 69 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~~l~~L~~L~l--~~c~~l~~ 69 (133)
++|++|++++|. +.. +...+...++|+.|++++|. ++. +.. .+...++|++|++ +++ .++.
T Consensus 65 ~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N-~i~~ 137 (185)
T 1io0_A 65 TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVE----ALQSNTSLIELRIDNQSQ-PLGN 137 (185)
T ss_dssp CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHH----GGGGCSSCCEEECCCCSS-CCCH
T ss_pred CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHH----HHHhCCCceEEEecCCCC-CCCH
Confidence 579999999974 432 33344556889999999975 543 334 5666789999999 554 3543
Q ss_pred -----cCcCCCCCCCccEEEEecCc
Q 048450 70 -----LPDYLLQTTTLQELTIHRCP 89 (133)
Q Consensus 70 -----lp~~~~~l~~L~~L~i~~c~ 89 (133)
+...+...++|++|+++++.
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCC
Confidence 33344455789999999875
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.97 E-value=0.081 Score=38.84 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=5.3
Q ss_pred CCCCCCccEEee
Q 048450 50 TTDIPRLTSLWI 61 (133)
Q Consensus 50 ~~~l~~L~~L~l 61 (133)
+..+++|+.+.+
T Consensus 222 F~~~~~L~~l~l 233 (401)
T 4fdw_A 222 FLKTSQLKTIEI 233 (401)
T ss_dssp TTTCTTCCCEEC
T ss_pred hhCCCCCCEEec
Confidence 333444444444
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.11 E-value=0.046 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=16.6
Q ss_pred CccEEEeccCCCCccccccccccCCCCCCccEEeecCC
Q 048450 27 ALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDC 64 (133)
Q Consensus 27 ~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c 64 (133)
+|+.|+++++ ++..+|.+ .+..+++|+.|++.++
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~---~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPG---LLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCCTT---TGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccChh---hhhhccccCEEEecCC
Confidence 4555555553 35555442 3344555555555543
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.65 E-value=0.28 Score=35.98 Aligned_cols=14 Identities=14% Similarity=-0.244 Sum_probs=6.7
Q ss_pred cCCCCCCccEEeec
Q 048450 49 RTTDIPRLTSLWIS 62 (133)
Q Consensus 49 ~~~~l~~L~~L~l~ 62 (133)
.+..+++|+.+++.
T Consensus 175 aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 175 IFYYCYNLKKADLS 188 (401)
T ss_dssp TTTTCTTCCEEECT
T ss_pred HhhCcccCCeeecC
Confidence 34444555555554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.11 E-value=0.34 Score=35.07 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEE
Q 048450 23 LQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTI 85 (133)
Q Consensus 23 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i 85 (133)
.+.++|+.+.+.. .+..++.. .+...++|+.+.+.. .++.+... +.++++|+.+.+
T Consensus 285 ~~c~~L~~i~l~~--~i~~I~~~---aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITELPES---VFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTT---TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccCCC--cccccCce---eecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 3445555555532 34444442 344445555555532 23444322 334445555554
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.04 E-value=0.13 Score=31.77 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=37.8
Q ss_pred EEEeccCCCCc--cccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCc
Q 048450 30 ELSICSCDLLE--ELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCP 89 (133)
Q Consensus 30 ~L~l~~c~~l~--~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~ 89 (133)
.++-++ ..++ .+|. .+ -++|++|++++ +.++.+|.+ +..+++|+.|++.+++
T Consensus 12 ~v~Cs~-~~L~~~~vP~----~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPT----AF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCS----CC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCC----CC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 344444 3466 7776 43 34799999988 668999876 4678899999999765
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.77 E-value=0.36 Score=34.94 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=24.3
Q ss_pred CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCCccEEEE
Q 048450 24 QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTTLQELTI 85 (133)
Q Consensus 24 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~i 85 (133)
...+|+.+.+.+ .++.++.. .+...++|+.+.+.. .++.++. .+.++++|+.+.+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~---aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEE---AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTT---TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECC
T ss_pred cccccccccccc--ccceechh---hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEE
Confidence 444555555532 24444432 344445555555532 2444432 2334445555544
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.86 E-value=1.2 Score=32.18 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=37.6
Q ss_pred CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEecCc
Q 048450 22 LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIHRCP 89 (133)
Q Consensus 22 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~~c~ 89 (133)
+.+.++|+.+.|.. .++.++.. .+..+++|+.+.|.. .++.+... +.++++|+.+++.+..
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~---aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDD---AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTT---TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCC--cccEehHh---HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 34566777777753 35666553 566677777777742 35566533 4566777777776643
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.24 E-value=0.6 Score=33.38 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=40.3
Q ss_pred CccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCc
Q 048450 3 RLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTL 80 (133)
Q Consensus 3 ~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L 80 (133)
+|+.+.+.. .+..+.. .+.+..+|+.+.+.. .+..++.. .+..+++|+.+.+.+ ..++.++.. +.++.+|
T Consensus 241 ~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~---aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 241 ALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL---LCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKL 312 (379)
T ss_dssp SCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT---TTTTCTTCCEEEECC-TTCCEECTTTTTTCTTC
T ss_pred cceEEEcCC--CccEeCccccceeehhccccccc--cceecccc---ccccccccccccccc-cccceehhhhhcCCCCC
Confidence 455555543 2344432 234556677776643 35555543 455566777776654 235555533 4455666
Q ss_pred cEEEEe
Q 048450 81 QELTIH 86 (133)
Q Consensus 81 ~~L~i~ 86 (133)
+.+.+.
T Consensus 313 ~~i~lp 318 (379)
T 4h09_A 313 SSVTLP 318 (379)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 666664
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.09 E-value=0.41 Score=34.60 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=57.4
Q ss_pred CCccEEeecCCCCCccCCc-cCCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCc-CCCCCCC
Q 048450 2 PRLSSLTVGSCNKLKALPD-YLLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPD-YLLQTTT 79 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~ 79 (133)
++|+.+.+.+ .+..++. .+.+.++|+.+++.+ .++.++.. .+..+++|+.+.+.. .++.++. .+.++++
T Consensus 297 ~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~---aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 297 SSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKR---SFRGCTSLSNINFPL--SLRKIGANAFQGCIN 367 (394)
T ss_dssp TTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT---TTTTCTTCCEECCCT--TCCEECTTTBTTCTT
T ss_pred cccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHH---hccCCCCCCEEEECc--cccEehHHHhhCCCC
Confidence 4677777754 4666663 356788999999864 47788764 677889999999864 3777765 4667889
Q ss_pred ccEEEEecC
Q 048450 80 LQELTIHRC 88 (133)
Q Consensus 80 L~~L~i~~c 88 (133)
|+.+++...
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 999999753
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.63 E-value=3 Score=29.67 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCCCccEEEeccCCCCccccccccccCCCCCCccEEeecCCCCCCccCcC-CCCCCCccEEEEe
Q 048450 24 QTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISDCPNLKVLPDY-LLQTTTLQELTIH 86 (133)
Q Consensus 24 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~i~ 86 (133)
....|+.+.+.. .++.++.. .+....+|+.+.+.. .++.++.. +..+++|+.+.+.
T Consensus 238 ~~~~L~~i~lp~--~v~~I~~~---aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 238 GMKALDEIAIPK--NVTSIGSF---LLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TCSSCCEEEECT--TCCEECTT---TTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEEC
T ss_pred CCccceEEEcCC--CccEeCcc---ccceeehhccccccc--cceecccccccccccccccccc
Confidence 344455555532 24444332 334444555555532 24444332 2344455555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.79 E-value=0.29 Score=32.54 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCccEEeecCCCCCcc-----CCccCCCCCCccEEEeccCCCCccccccc-cccCCCCCCccEEeecCCCCCCc-----c
Q 048450 2 PRLSSLTVGSCNKLKA-----LPDYLLQTTALQELSICSCDLLEELPILE-DRRTTDIPRLTSLWISDCPNLKV-----L 70 (133)
Q Consensus 2 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~~l~~L~~L~l~~c~~l~~-----l 70 (133)
+.|++|+++++..+.. +-+.+..-++|+.|++++|. ++.-.... -+.+..-++|+.|+++++. ++. +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHH
Confidence 4678888876534432 23344556788888888864 43211100 0022234678888887743 432 3
Q ss_pred CcCCCCCCCccEEEEecC
Q 048450 71 PDYLLQTTTLQELTIHRC 88 (133)
Q Consensus 71 p~~~~~l~~L~~L~i~~c 88 (133)
-+.+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 334444457888888754
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.78 E-value=74 Score=18.13 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=24.9
Q ss_pred CCCCCCccEEEeccCCCCccccccccccCCCCCCccEEeecC
Q 048450 22 LLQTTALQELSICSCDLLEELPILEDRRTTDIPRLTSLWISD 63 (133)
Q Consensus 22 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~l~~L~~L~l~~ 63 (133)
+.+.++|+.+.|.. .++.+... .+....+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~---aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDG---MFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTT---SSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHH---HHhccCCccEEEEcC
Confidence 45667788787754 36666553 566777888887764
Done!