BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048453
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 85/115 (73%), Gaps = 1/115 (0%)
Query: 7 KQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQ 66
+++ K L+++MG TG+GKS+L++DLA+HFP+E+IN+D MQVY+GLD+ TNK+S+ D+
Sbjct: 33 RRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDR 92
Query: 67 KGVPHHLLGTVSP-NVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALV 120
GVPHHLLG V P E T +FR A +SEI R +P +VGG+N +I AL+
Sbjct: 93 GGVPHHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALL 147
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 35/219 (15%)
Query: 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLG 75
+++I G TG GKS+L++ LA F E+IN+DSMQVY+ + ++TNK LQ+++G+PHH++
Sbjct: 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMN 63
Query: 76 TVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDES 135
V + E+ + F + I +I R IP +VGGT+YY+Q L + + S+E
Sbjct: 64 HVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSE----- 118
Query: 136 CFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPXXXXXXXXXXXXXXXXXXXXPVA 195
L+ KQL T V+Y D P
Sbjct: 119 --RKLTR-KQLDILE--STDPDVIYNTLVKCD-------------------------PDI 148
Query: 196 ANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKAAEVGF 234
A + HPN+YR++ + L +Y +TG PS+ + + + F
Sbjct: 149 ATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKF 187
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 34/206 (16%)
Query: 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHH 72
K LV I+GPT GK+K +V LA E+I+ DS QVY+G D+ T K++ ++ GVPHH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHH 61
Query: 73 LLGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDM 132
L+ P+ F+ +F+D A PLI+EI R +PF+VGGT Y+ A++ F L D D
Sbjct: 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121
Query: 133 DESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPXXXXXXXXXXXXXXXXXXXX 192
D ++ + L+ L ++
Sbjct: 122 D-----YRHELEAFVNSYGVQALHDKLSKI-----------------------------D 147
Query: 193 PVAANRIHPNNYRKINQYLSLYARTG 218
P AA IHPNNYR++ + L + TG
Sbjct: 148 PKAAAAIHPNNYRRVIRALEIIKLTG 173
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 78/117 (66%)
Query: 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHH 72
KP L++I+GPT SGK++L++++A F EII+ DS QVYQG D+ T KV+ ++ +G+PH+
Sbjct: 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHY 65
Query: 73 LLGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSA 129
+ + P+ F+A EF+ A I +I R +P I GGT YIQ+L+ + +D +
Sbjct: 66 XIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDES 122
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%)
Query: 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHL 73
P + +MGPT SGK+ LA++L P+E+I+ DS +Y+G+D+ T K + ++ PH L
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRL 69
Query: 74 LGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVS 121
L P+ ++A +FR A+ +++I + IP +VGGT Y +AL+
Sbjct: 70 LDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLE 117
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 64/107 (59%)
Query: 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHL 73
P + + GPT SGK+ LA++L P+E+I+ DS +Y+G D+ T K + ++ PH L
Sbjct: 10 PKAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRL 69
Query: 74 LGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALV 120
L P+ ++A +FR A+ ++I + IP +VGGT Y +AL+
Sbjct: 70 LDIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALL 116
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 35/218 (16%)
Query: 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHL 73
P + +MGPT +GK+ LA+ LA P E+I+ DS +Y+G+D+ T K S + PH L
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRL 64
Query: 74 LGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMD 133
+ P ++A EFR A+ +++ +R IP +VGGT Y +AL+ + DM
Sbjct: 65 IDIRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALL------EGLADMP 118
Query: 134 ESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPXXXXXXXXXXXXXXXXXXXXP 193
G+ ++ L+R D P
Sbjct: 119 ----GADPEVRAAIEAEAQAEGWEALHRQLAEVD-------------------------P 149
Query: 194 VAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKAAE 231
+A RIHPN+ +++ + L +Y GV S L + ++AE
Sbjct: 150 ESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQSAE 187
>pdb|2ZEO|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305e At 1.66 Angstrom Resolution
pdb|2ZEO|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305e At 1.66 Angstrom Resolution
Length = 329
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQEDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2ZEN|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305a At 1.78 Angstrom Resolution
pdb|2ZEN|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D305a At 1.78 Angstrom Resolution
Length = 329
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQADHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2ZEM|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248q At 2.18 Angstrom Resolution
pdb|2ZEM|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248q At 2.18 Angstrom Resolution
Length = 329
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2ZED|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160a At 1.7 Angstrom Resolution
pdb|2ZED|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160a At 1.7 Angstrom Resolution
Length = 329
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2ZEL|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248a At 1.97 Angstrom Resolution
pdb|2ZEL|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
D248a At 1.97 Angstrom Resolution
Length = 329
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2AFU|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With Glutamine T-Butyl Ester
pdb|2AFU|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With Glutamine T-Butyl Ester
pdb|2ZEH|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201q At 1.8 Angstrom Resolution
pdb|2ZEH|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201q At 1.8 Angstrom Resolution
Length = 329
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2AFS|A Chain A, Crystal Structure Of The Genetic Mutant R54w Of Human
Glutaminyl Cyclase
pdb|2AFS|B Chain B, Crystal Structure Of The Genetic Mutant R54w Of Human
Glutaminyl Cyclase
Length = 329
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2AFM|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase At Ph 6.5
pdb|2AFM|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase At Ph 6.5
pdb|2AFO|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase At Ph 8.0
pdb|2AFO|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase At Ph 8.0
pdb|2AFW|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With N-Acetylhistamine
pdb|2AFW|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With N-Acetylhistamine
pdb|2AFX|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Benzylimidazole
pdb|2AFX|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Benzylimidazole
pdb|2AFZ|A Chain A, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Vinylimidazole
pdb|2AFZ|B Chain B, Crystal Structure Of Human Glutaminyl Cyclase In Complex
With 1- Vinylimidazole
pdb|3PBB|A Chain A, Crystal Structure Of Human Secretory Glutaminyl Cyclase In
Complex With Pbd150
pdb|3PBB|B Chain B, Crystal Structure Of Human Secretory Glutaminyl Cyclase In
Complex With Pbd150
Length = 329
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2ZEG|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201l At 2.08 Angstrom Resolution
pdb|2ZEG|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201l At 2.08 Angstrom Resolution
Length = 329
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2ZEE|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160g At 1.99 Angstrom Resolution
pdb|2ZEE|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
S160g At 1.99 Angstrom Resolution
Length = 329
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|3PBE|A Chain A, Crystal Structure Of The Mutant W207f Of Human Secretory
Glutaminyl Cyclase
pdb|3PBE|B Chain B, Crystal Structure Of The Mutant W207f Of Human Secretory
Glutaminyl Cyclase
Length = 329
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|2ZEF|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201d At 1.67 Angstrom Resolution
pdb|2ZEF|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
E201d At 1.67 Angstrom Resolution
Length = 329
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|3SI0|A Chain A, Structure Of Glycosylated Human Glutaminyl Cyclase
Length = 330
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 271 VIQDDHIPFLRRGVPV-LHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 323
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 17 VIIMGPTGSGKSKLAVDLASHF--PIEIINADSMQV--YQGLDV 56
++++GPTGSGK+ +A LA H PI I +A S+ Y G DV
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDV 118
>pdb|2ZEP|A Chain A, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
H319l At 2.1 Angstrom Resolution
pdb|2ZEP|B Chain B, Crystal Structure Of The Human Glutaminyl Cyclase Mutant
H319l At 2.1 Angstrom Resolution
Length = 329
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 99 ILSRDHIPFIVGGTNYYIQALVSPF-----LLDDSAEDMDESCFGSLSGIKQLF 147
++ DHIPF+ G + + SPF +DD+ E++DES +L+ I Q+F
Sbjct: 270 VIQDDHIPFLRRGVPVLL-LIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVF 322
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 17 VIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVP 70
V++MG +GSGK+ +A +A +E AD+ + + + + L D+ P
Sbjct: 32 VVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP 85
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNK 60
++NK ++ +I+GP GSGKS L +++ + F + AD +VY +TNK
Sbjct: 29 SVNKGDVTLIIGPNGSGKSTL-INVITGF----LKADEGRVYFENKDITNK 74
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNK 60
++NK ++ +I+GP GSGKS L +++ + F + AD +VY +TNK
Sbjct: 29 SVNKGDVTLIIGPNGSGKSTL-INVITGF----LKADEGRVYFENKDITNK 74
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV----YQGLDV 56
L K N+++I GPTGSGK+ LA LA + AD+ + Y G DV
Sbjct: 49 LGKSNILLI-GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 97
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV----YQGLDV 56
L K N+++I GPTGSGK+ LA LA + AD+ + Y G DV
Sbjct: 49 LGKSNILLI-GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 97
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 15 NLVIIMGPTGSGKSKLAVDLASHF-PIEIINAD 46
+LV+++G +GSGKS A HF P E+I++D
Sbjct: 10 SLVVLIGSSGSGKSTFA---KKHFKPTEVISSD 39
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 15 NLVIIMGPTGSGKSKLAVDLASHF-PIEIINAD 46
+LV+++G +GSGKS A HF P E+I++D
Sbjct: 10 SLVVLIGSSGSGKSTFA---KKHFKPTEVISSD 39
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 110 GGTNYYIQALVSPFLLDDSAEDMDESCFGSLS-GIKQLFYFTCICTLNTVLYRLFFAGDE 168
GG N++ A +SP+LL +A MD + G Q F I T + Y L D
Sbjct: 198 GGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDI 257
Query: 169 P 169
P
Sbjct: 258 P 258
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 17 VIIMGPTGSGKSKLAVDLASHFPIEIINAD-SMQVYQGLDVLTNKVSLQDQKGVPHHLLG 75
+ ++GP G+GKS + LA +E ++D ++ G DV G L G
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADV-----------GWVFDLEG 55
Query: 76 TVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGG 111
FRD +I+E+ + I GG
Sbjct: 56 EEG---------FRDREEKVINELTEKQGIVLATGG 82
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella
Burnetii
Length = 205
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 10 ALNKPNLVIIMGPTGSGKSKL 30
A NK NL II P+G+GK+ L
Sbjct: 3 AXNKANLFIISAPSGAGKTSL 23
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 19 IMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKG 68
IMGP GSGKS L+ LA E+ ++G D+L +S +D+ G
Sbjct: 51 IMGPNGSGKSTLSATLAGREDYEVTGGTVE--FKGKDLLA--LSPEDRAG 96
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQ 52
+ +P VI+ GP G+GK+ LA +A H + I ++ Q
Sbjct: 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 19 IMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKG 68
IMGP GSGKS L+ LA E+ ++G D+L +S +D+ G
Sbjct: 32 IMGPNGSGKSTLSATLAGREDYEVTGGTVE--FKGKDLLA--LSPEDRAG 77
>pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lyase From Aspergillus
Nidulans
Length = 538
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 85 AKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSA 129
A+ ++A + S I RDH PFI+G TN IQ L ++ + A
Sbjct: 242 ARTDSEAATLITSTIDHRDH-PFIIGSTNPDIQPLNDLMVMAEQA 285
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQD 65
+V + GP+G+GKS +A +LA ++ +M L VL V L D
Sbjct: 6 VVAVDGPSGTGKSSVAKELARQLGASYLDTGAMYRIVTLWVLRAGVDLTD 55
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified
Dna
Length = 916
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 13 KPNLVIIMGPTGSGKSKLAVD 33
K LV+I G +GSGKS LA+D
Sbjct: 23 KNRLVVITGVSGSGKSSLAMD 43
>pdb|1G71|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna Primase
pdb|1G71|B Chain B, Crystal Structure Of Pyrococcus Furiosus Dna Primase
Length = 347
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 44 NADSMQVYQGLDVLTNKVSLQDQKGVP----HHLLGTVSPNVEFTAKEFRDSAVPLISEI 99
N M+ ++G +++ + D K +P +H GTV P AKE + ++ E
Sbjct: 80 NPREMEGWRGAELVFD----IDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREE 135
Query: 100 LSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYF 149
L ++I + G Y+I+ L L DS F S S I+ + F
Sbjct: 136 LGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIENVEEF 185
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 8 QRALNKPNLVIIMGPTGSGKSKLAVDLAS-HFPIEIINADSMQVYQGLDVLTNKVSLQDQ 66
Q AL N++I + PTGSGK+++AV +A H + ++ +V VL NKV L +Q
Sbjct: 43 QPALEGKNIIICL-PTGSGKTRVAVYIAKDHLDKKKKASEPGKVI----VLVNKVLLVEQ 97
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFP 39
Q ++++P ++I GP+G+GKS L L + +P
Sbjct: 13 QGSMSRP--IVISGPSGTGKSTLLKKLFAEYP 42
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVP 70
++ ++MG +GSGKS +A ++A ++ D + + ++ + + L D P
Sbjct: 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 64
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNK 60
K ++ +I+GP GSGKS L +++ + F + AD +VY +TNK
Sbjct: 32 KGDVTLIIGPNGSGKSTL-INVITGF----LKADEGRVYFENKDITNK 74
>pdb|1V33|A Chain A, Crystal Structure Of Dna Primase From Pyrococcus
Horikoshii
pdb|1V34|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Dna Primase-utp
Complex
Length = 366
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 65 DQKGVP----HHLLGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALV 120
D K +P H GTV P AKE V ++ E L + I I G Y+I+ L
Sbjct: 117 DAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSGRGYHIRVLD 176
Query: 121 SPFLLDDSAEDMDESCFGSLSGIKQLFYF 149
L DS F S S I+ + F
Sbjct: 177 EWALKLDSKSRERILSFVSASEIEDVEEF 205
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIE 41
+RA+ ++++ G TGSGK+ L L P +
Sbjct: 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 30/132 (22%)
Query: 17 VIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGT 76
++I GP+G GK L L + FP Y + T K ++++GV ++ +
Sbjct: 26 LVICGPSGVGKGTLIKKLLNEFP--------NYFYFSVSCTTRKKREKEKEGVDYYFIDK 77
Query: 77 VSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESC 136
F D ++ + D + + N+Y L S + D A++ ++ C
Sbjct: 78 TI---------FED-------KLKNEDFLEYDNYANNFY-GTLKSEY---DKAKEQNKIC 117
Query: 137 F--GSLSGIKQL 146
+++G+KQL
Sbjct: 118 LFEMNINGVKQL 129
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 16 LVIIMGPTGSGKSKLA------------VDLASHFPIEIINADSMQVYQGLDVLTNKVSL 63
LV+ G +GSGKS LA ++ S + + N + +D L V+L
Sbjct: 38 LVVFTGVSGSGKSSLAFGTLYAEAQRRYLESVSPYARRLFNQAGVPDVDAIDGLPPAVAL 97
Query: 64 QDQKGVP 70
Q +G P
Sbjct: 98 QQARGTP 104
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 18 IIMGPTGSGKSKLAVDLASHFPIEIINAD 46
+ GPTG GK+++ V L+ IE++ D
Sbjct: 492 LFAGPTGVGKTEVTVQLSKALGIELLRFD 520
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition
By Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition
By Mda5
Length = 699
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 8 QRALNKPNLVIIMGPTGSGKSKLAVDLAS-HFPIEIINADSMQVYQGLDVLTNKVSLQDQ 66
Q AL N++I + PTG GK+++AV +A H + ++ +V VL NKV L +Q
Sbjct: 17 QPALEGKNIIICL-PTGCGKTRVAVYIAKDHLDKKKKASEPGKVI----VLVNKVLLVEQ 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,558,021
Number of Sequences: 62578
Number of extensions: 242535
Number of successful extensions: 879
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 66
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)