Query 048453
Match_columns 236
No_of_seqs 325 out of 2692
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14729 miaA tRNA delta(2)-is 100.0 5.7E-44 1.2E-48 312.3 16.1 183 11-229 1-183 (300)
2 PLN02748 tRNA dimethylallyltra 100.0 1.9E-42 4.1E-47 318.0 18.0 193 12-229 20-214 (468)
3 COG0324 MiaA tRNA delta(2)-iso 100.0 2.6E-42 5.6E-47 301.0 16.8 179 14-228 3-182 (308)
4 TIGR00174 miaA tRNA isopenteny 100.0 2.1E-41 4.7E-46 294.7 16.0 185 16-235 1-185 (287)
5 PRK00091 miaA tRNA delta(2)-is 100.0 3.8E-39 8.3E-44 283.7 16.6 180 13-227 3-182 (307)
6 PLN02840 tRNA dimethylallyltra 100.0 1.3E-38 2.9E-43 288.3 16.8 179 10-225 17-201 (421)
7 PF01715 IPPT: IPP transferase 100.0 5E-33 1.1E-37 239.2 9.3 152 48-234 1-152 (253)
8 PLN02165 adenylate isopentenyl 99.9 9.7E-25 2.1E-29 192.8 11.0 113 11-123 40-153 (334)
9 KOG1384 tRNA delta(2)-isopente 99.9 7.5E-24 1.6E-28 184.1 8.9 110 13-122 6-115 (348)
10 COG1120 FepC ABC-type cobalami 99.8 1E-19 2.2E-24 155.9 2.0 55 8-69 22-77 (258)
11 COG1136 SalX ABC-type antimicr 99.7 1.8E-17 4E-22 139.5 8.9 121 8-135 25-176 (226)
12 COG1126 GlnQ ABC-type polar am 99.7 6.7E-18 1.4E-22 139.9 4.5 123 8-136 22-171 (240)
13 COG3839 MalK ABC-type sugar tr 99.7 3.5E-17 7.6E-22 145.3 6.5 120 7-135 22-167 (338)
14 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 1.7E-17 3.6E-22 141.7 2.5 44 8-56 24-68 (254)
15 COG3842 PotA ABC-type spermidi 99.7 6.8E-17 1.5E-21 144.2 6.2 119 8-135 25-170 (352)
16 COG1125 OpuBA ABC-type proline 99.7 6.2E-17 1.3E-21 137.1 4.2 74 8-88 21-95 (309)
17 COG4559 ABC-type hemin transpo 99.6 4E-17 8.7E-22 135.0 1.3 168 10-218 23-191 (259)
18 COG1122 CbiO ABC-type cobalt t 99.6 2.5E-16 5.5E-21 134.1 4.1 165 8-221 24-192 (235)
19 COG4619 ABC-type uncharacteriz 99.6 3.6E-16 7.8E-21 125.2 3.8 123 8-135 23-167 (223)
20 COG4604 CeuD ABC-type enteroch 99.6 2.1E-16 4.6E-21 129.4 1.8 121 8-146 21-142 (252)
21 COG1116 TauB ABC-type nitrate/ 99.6 3.6E-16 7.9E-21 132.3 3.0 121 8-136 23-165 (248)
22 COG3840 ThiQ ABC-type thiamine 99.6 6.4E-15 1.4E-19 119.4 9.4 121 8-135 19-163 (231)
23 COG1117 PstB ABC-type phosphat 99.6 1.9E-15 4.1E-20 125.2 5.1 63 7-69 26-89 (253)
24 COG1118 CysA ABC-type sulfate/ 99.6 6E-16 1.3E-20 134.1 1.9 42 8-54 22-64 (345)
25 COG1124 DppF ABC-type dipeptid 99.6 9.5E-15 2.1E-19 123.1 8.8 121 8-135 27-175 (252)
26 COG1137 YhbG ABC-type (unclass 99.6 4E-16 8.8E-21 128.0 -0.8 162 8-219 24-190 (243)
27 COG0411 LivG ABC-type branched 99.5 9.9E-16 2.1E-20 129.1 1.2 177 8-220 24-202 (250)
28 TIGR01188 drrA daunorubicin re 99.5 2.8E-15 6.1E-20 132.3 3.5 45 8-57 13-58 (302)
29 PRK09536 btuD corrinoid ABC tr 99.5 2.7E-15 5.9E-20 137.1 3.4 45 8-57 23-68 (402)
30 cd03262 ABC_HisP_GlnQ_permease 99.5 2.6E-15 5.7E-20 125.5 3.0 45 8-57 20-65 (213)
31 PRK11650 ugpC glycerol-3-phosp 99.5 3.9E-15 8.5E-20 134.2 4.0 45 8-57 24-69 (356)
32 cd03261 ABC_Org_Solvent_Resist 99.5 4.9E-15 1.1E-19 125.9 4.3 44 9-57 21-65 (235)
33 COG3638 ABC-type phosphate/pho 99.5 3.6E-15 7.9E-20 125.1 3.2 52 9-67 25-77 (258)
34 TIGR03265 PhnT2 putative 2-ami 99.5 3.4E-15 7.3E-20 134.5 3.2 46 8-58 24-70 (353)
35 TIGR00960 3a0501s02 Type II (G 99.5 3.4E-15 7.3E-20 125.3 3.0 45 8-57 23-68 (216)
36 COG2274 SunT ABC-type bacterio 99.5 1E-14 2.3E-19 141.1 6.7 120 9-135 494-643 (709)
37 PRK13536 nodulation factor exp 99.5 5.5E-15 1.2E-19 132.5 4.0 44 9-57 62-106 (340)
38 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 6.3E-15 1.4E-19 123.7 3.9 44 9-57 25-69 (218)
39 COG2884 FtsE Predicted ATPase 99.5 2.9E-15 6.3E-20 122.0 1.7 119 9-135 23-171 (223)
40 TIGR02314 ABC_MetN D-methionin 99.5 7.5E-15 1.6E-19 131.7 4.5 46 8-58 25-71 (343)
41 TIGR01166 cbiO cobalt transpor 99.5 6.2E-15 1.3E-19 121.4 3.4 162 8-220 12-179 (190)
42 TIGR01186 proV glycine betaine 99.5 9.6E-15 2.1E-19 131.9 4.8 45 8-57 13-58 (363)
43 COG1131 CcmA ABC-type multidru 99.5 3.6E-15 7.8E-20 131.2 1.8 76 8-91 25-101 (293)
44 cd03292 ABC_FtsE_transporter F 99.5 5.5E-15 1.2E-19 123.6 2.6 46 8-58 21-67 (214)
45 TIGR02673 FtsE cell division A 99.5 8.7E-15 1.9E-19 122.5 3.6 45 8-57 22-67 (214)
46 PRK09493 glnQ glutamine ABC tr 99.5 7.7E-15 1.7E-19 125.0 3.3 45 8-57 21-66 (240)
47 PRK13537 nodulation ABC transp 99.5 8.6E-15 1.9E-19 129.5 3.5 45 8-57 27-72 (306)
48 PRK11629 lolD lipoprotein tran 99.5 7.1E-15 1.5E-19 124.8 2.7 45 8-57 29-74 (233)
49 cd03265 ABC_DrrA DrrA is the A 99.5 1.3E-14 2.9E-19 122.0 4.3 45 8-57 20-65 (220)
50 PRK11432 fbpC ferric transport 99.5 1.2E-14 2.6E-19 130.9 4.2 45 8-57 26-71 (351)
51 COG1135 AbcC ABC-type metal io 99.5 6E-15 1.3E-19 128.1 2.1 120 8-135 26-175 (339)
52 cd03266 ABC_NatA_sodium_export 99.5 1E-14 2.2E-19 122.4 3.3 45 8-57 25-70 (218)
53 cd03256 ABC_PhnC_transporter A 99.5 1E-14 2.2E-19 124.1 3.3 45 8-57 21-66 (241)
54 cd03259 ABC_Carb_Solutes_like 99.5 9.4E-15 2E-19 122.3 2.9 45 8-57 20-65 (213)
55 PRK11022 dppD dipeptide transp 99.5 1.2E-14 2.5E-19 129.7 3.7 52 8-66 27-83 (326)
56 cd03219 ABC_Mj1267_LivG_branch 99.5 2E-14 4.3E-19 122.1 4.9 45 8-57 20-65 (236)
57 cd03225 ABC_cobalt_CbiO_domain 99.5 1.5E-14 3.3E-19 120.8 4.0 45 8-57 21-66 (211)
58 cd03258 ABC_MetN_methionine_tr 99.5 1.8E-14 4E-19 122.1 4.5 45 8-57 25-70 (233)
59 cd03230 ABC_DR_subfamily_A Thi 99.5 8.4E-14 1.8E-18 113.1 8.2 99 8-135 20-129 (173)
60 cd03229 ABC_Class3 This class 99.5 6.3E-14 1.4E-18 114.4 7.5 104 8-135 20-134 (178)
61 TIGR03258 PhnT 2-aminoethylpho 99.5 1.6E-14 3.4E-19 130.6 4.3 45 8-57 25-72 (362)
62 cd03215 ABC_Carb_Monos_II This 99.5 9.6E-14 2.1E-18 113.7 8.5 105 8-135 20-138 (182)
63 cd03246 ABCC_Protease_Secretio 99.5 7.6E-14 1.6E-18 113.4 7.7 101 9-135 23-130 (173)
64 TIGR02211 LolD_lipo_ex lipopro 99.5 1.5E-14 3.2E-19 121.7 3.6 46 8-58 25-71 (221)
65 PRK13647 cbiO cobalt transport 99.5 1.4E-14 3E-19 126.2 3.5 44 9-57 26-70 (274)
66 TIGR01288 nodI ATP-binding ABC 99.5 1.7E-14 3.7E-19 127.4 4.0 45 8-57 24-69 (303)
67 PRK11000 maltose/maltodextrin 99.5 1.4E-14 3E-19 131.3 3.5 45 8-57 23-68 (369)
68 PRK11153 metN DL-methionine tr 99.5 2E-14 4.4E-19 129.0 4.4 45 8-57 25-70 (343)
69 COG0410 LivF ABC-type branched 99.5 3.6E-14 7.8E-19 118.8 5.4 125 8-137 23-172 (237)
70 PRK10851 sulfate/thiosulfate t 99.5 1.3E-14 2.8E-19 130.8 2.8 46 8-58 22-68 (353)
71 PRK09452 potA putrescine/sperm 99.5 1.6E-14 3.5E-19 131.0 3.4 45 8-57 34-79 (375)
72 cd03226 ABC_cobalt_CbiO_domain 99.5 3.6E-14 7.7E-19 118.2 5.2 45 8-57 20-65 (205)
73 TIGR02315 ABC_phnC phosphonate 99.5 1.3E-13 2.9E-18 117.5 8.8 45 8-57 22-67 (243)
74 cd03295 ABC_OpuCA_Osmoprotecti 99.5 2.5E-14 5.4E-19 122.1 4.3 45 8-57 21-66 (242)
75 cd03218 ABC_YhbG The ABC trans 99.5 2.6E-14 5.6E-19 121.1 4.4 45 8-57 20-65 (232)
76 PRK13637 cbiO cobalt transport 99.5 1.9E-14 4.2E-19 126.1 3.7 46 8-58 27-73 (287)
77 cd03269 ABC_putative_ATPase Th 99.5 1.3E-14 2.7E-19 121.3 2.3 45 8-57 20-65 (210)
78 PRK10908 cell division protein 99.5 1.9E-14 4.1E-19 121.3 3.3 45 8-57 22-67 (222)
79 PRK09473 oppD oligopeptide tra 99.5 1.8E-14 4E-19 128.7 3.0 52 8-66 36-91 (330)
80 PRK10070 glycine betaine trans 99.5 3.5E-14 7.6E-19 129.7 4.8 45 8-57 48-93 (400)
81 cd03296 ABC_CysA_sulfate_impor 99.5 3.3E-14 7.1E-19 121.2 4.1 45 8-57 22-67 (239)
82 TIGR03873 F420-0_ABC_ATP propo 99.5 3E-14 6.5E-19 122.7 3.9 44 9-57 22-66 (256)
83 cd03224 ABC_TM1139_LivF_branch 99.5 2.6E-14 5.5E-19 120.2 3.3 45 8-57 20-65 (222)
84 PRK10584 putative ABC transpor 99.5 3E-14 6.6E-19 120.4 3.7 46 8-58 30-76 (228)
85 PRK13538 cytochrome c biogenes 99.5 4.9E-14 1.1E-18 117.4 4.9 156 8-220 21-181 (204)
86 PRK15079 oligopeptide ABC tran 99.5 2.2E-14 4.8E-19 128.2 2.9 45 8-57 41-86 (331)
87 PRK15093 antimicrobial peptide 99.5 3.5E-14 7.5E-19 126.9 4.0 45 8-57 27-76 (330)
88 cd03228 ABCC_MRP_Like The MRP 99.5 1.5E-13 3.2E-18 111.5 7.4 102 8-135 22-130 (171)
89 TIGR02142 modC_ABC molybdenum 99.5 3.6E-14 7.7E-19 128.0 4.1 44 9-57 18-62 (354)
90 PRK11607 potG putrescine trans 99.5 2.2E-14 4.8E-19 130.2 2.8 45 8-57 39-84 (377)
91 cd03268 ABC_BcrA_bacitracin_re 99.5 4.1E-14 8.8E-19 118.0 4.1 45 8-57 20-65 (208)
92 PRK11124 artP arginine transpo 99.5 3.8E-14 8.2E-19 120.9 3.8 44 8-56 22-66 (242)
93 TIGR01184 ntrCD nitrate transp 99.5 4.3E-14 9.3E-19 120.0 4.1 45 8-57 5-50 (230)
94 TIGR02868 CydC thiol reductant 99.5 1E-13 2.2E-18 130.9 7.1 119 9-135 356-504 (529)
95 PRK13650 cbiO cobalt transport 99.5 2.8E-14 6.1E-19 124.6 3.0 45 8-57 27-72 (279)
96 PRK10575 iron-hydroxamate tran 99.5 1.7E-14 3.6E-19 125.0 1.6 45 8-57 31-76 (265)
97 PRK11231 fecE iron-dicitrate t 99.5 2.8E-14 6E-19 122.8 2.8 45 8-57 22-67 (255)
98 PRK13643 cbiO cobalt transport 99.4 4.2E-14 9.2E-19 124.0 3.9 45 8-57 26-71 (288)
99 PRK14247 phosphate ABC transpo 99.4 5.5E-14 1.2E-18 120.5 4.5 45 8-57 23-73 (250)
100 PF01745 IPT: Isopentenyl tran 99.4 1.4E-13 3.1E-18 114.2 6.8 107 15-122 2-109 (233)
101 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 4.5E-14 9.7E-19 120.1 3.9 45 8-57 21-66 (236)
102 COG4618 ArpD ABC-type protease 99.4 2.1E-13 4.5E-18 125.1 8.3 120 9-135 357-506 (580)
103 PRK13638 cbiO cobalt transport 99.4 4.2E-14 9.1E-19 122.8 3.7 45 8-57 21-66 (271)
104 PRK11264 putative amino-acid A 99.4 4.6E-14 9.9E-19 120.9 3.8 45 8-57 23-68 (250)
105 TIGR03411 urea_trans_UrtD urea 99.4 4.6E-13 9.9E-18 114.2 9.9 45 8-57 22-67 (242)
106 cd03263 ABC_subfamily_A The AB 99.4 4.3E-14 9.3E-19 118.8 3.5 45 8-57 22-67 (220)
107 cd03293 ABC_NrtD_SsuB_transpor 99.4 4.4E-14 9.5E-19 118.9 3.5 45 8-57 24-69 (220)
108 PRK13548 hmuV hemin importer A 99.4 3.6E-14 7.8E-19 122.5 3.0 160 8-220 22-193 (258)
109 TIGR01978 sufC FeS assembly AT 99.4 9.3E-14 2E-18 118.4 5.5 45 8-57 20-67 (243)
110 cd03264 ABC_drug_resistance_li 99.4 3.5E-13 7.6E-18 112.6 8.9 43 9-57 21-64 (211)
111 COG1129 MglA ABC-type sugar tr 99.4 5.6E-14 1.2E-18 130.0 4.4 164 8-221 28-198 (500)
112 PRK10619 histidine/lysine/argi 99.4 4.7E-14 1E-18 121.5 3.6 45 8-57 25-70 (257)
113 TIGR03608 L_ocin_972_ABC putat 99.4 2.8E-14 6E-19 118.7 2.1 44 9-57 19-63 (206)
114 TIGR03522 GldA_ABC_ATP gliding 99.4 4.3E-14 9.2E-19 124.7 3.4 44 9-57 23-67 (301)
115 PRK11831 putative ABC transpor 99.4 6.5E-14 1.4E-18 121.6 4.4 45 8-57 27-72 (269)
116 PRK11308 dppF dipeptide transp 99.4 3.1E-14 6.7E-19 127.1 2.4 45 8-57 35-80 (327)
117 COG0444 DppD ABC-type dipeptid 99.4 7E-14 1.5E-18 122.3 4.4 71 8-80 25-96 (316)
118 PRK10895 lipopolysaccharide AB 99.4 5.6E-14 1.2E-18 119.8 3.8 45 8-57 23-68 (241)
119 PRK11144 modC molybdate transp 99.4 6E-14 1.3E-18 126.4 4.1 45 8-57 18-63 (352)
120 TIGR01189 ccmA heme ABC export 99.4 9.1E-14 2E-18 115.2 4.9 155 8-220 20-179 (198)
121 cd03301 ABC_MalK_N The N-termi 99.4 4.3E-14 9.4E-19 118.2 2.9 45 8-57 20-65 (213)
122 PRK13644 cbiO cobalt transport 99.4 4.2E-14 9.2E-19 123.1 2.9 44 9-57 23-67 (274)
123 cd03233 ABC_PDR_domain1 The pl 99.4 3.7E-13 8.1E-18 112.1 8.5 116 8-135 27-152 (202)
124 cd03294 ABC_Pro_Gly_Bertaine T 99.4 7.6E-14 1.6E-18 121.2 4.5 45 8-57 44-89 (269)
125 PRK13639 cbiO cobalt transport 99.4 5.5E-14 1.2E-18 122.4 3.6 45 8-57 22-67 (275)
126 PRK13646 cbiO cobalt transport 99.4 3.9E-14 8.4E-19 124.1 2.5 45 8-57 27-72 (286)
127 PRK11174 cysteine/glutathione 99.4 2.5E-13 5.4E-18 129.8 8.2 120 9-136 371-520 (588)
128 PRK13636 cbiO cobalt transport 99.4 5.7E-14 1.2E-18 122.9 3.5 45 8-57 26-71 (283)
129 PRK13635 cbiO cobalt transport 99.4 5.2E-14 1.1E-18 122.9 3.2 46 8-58 27-73 (279)
130 PRK13651 cobalt transporter AT 99.4 5.3E-14 1.2E-18 124.4 3.3 44 8-56 27-71 (305)
131 KOG0058 Peptide exporter, ABC 99.4 1.5E-13 3.2E-18 130.5 6.5 115 10-135 490-638 (716)
132 COG4175 ProV ABC-type proline/ 99.4 1.8E-13 3.9E-18 119.3 6.5 121 8-135 48-198 (386)
133 cd03216 ABC_Carb_Monos_I This 99.4 2.1E-13 4.6E-18 109.9 6.5 90 8-135 20-116 (163)
134 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 2.9E-13 6.4E-18 131.6 8.7 122 8-136 473-623 (686)
135 PRK13634 cbiO cobalt transport 99.4 7.6E-14 1.7E-18 122.5 4.1 45 8-57 27-72 (290)
136 PRK14250 phosphate ABC transpo 99.4 1.1E-13 2.3E-18 118.3 4.8 45 8-57 23-68 (241)
137 PRK10790 putative multidrug tr 99.4 2E-13 4.3E-18 130.6 7.1 122 8-136 361-511 (592)
138 COG1127 Ttg2A ABC-type transpo 99.4 2.6E-13 5.6E-18 114.3 6.7 121 8-135 28-179 (263)
139 PRK11300 livG leucine/isoleuci 99.4 7.8E-13 1.7E-17 113.6 9.9 45 8-57 25-70 (255)
140 COG0396 sufC Cysteine desulfur 99.4 2.2E-13 4.9E-18 114.0 6.2 78 8-91 24-104 (251)
141 cd03257 ABC_NikE_OppD_transpor 99.4 1.3E-13 2.7E-18 116.4 4.8 46 8-58 25-71 (228)
142 cd03298 ABC_ThiQ_thiamine_tran 99.4 5.8E-14 1.3E-18 117.3 2.7 45 8-57 18-63 (211)
143 cd03260 ABC_PstB_phosphate_tra 99.4 6.1E-13 1.3E-17 112.4 9.0 45 8-57 20-70 (227)
144 PRK13632 cbiO cobalt transport 99.4 8.3E-14 1.8E-18 121.0 3.7 45 8-57 29-74 (271)
145 PRK13540 cytochrome c biogenes 99.4 1.8E-13 4E-18 113.6 5.6 158 8-220 21-179 (200)
146 PRK13641 cbiO cobalt transport 99.4 8.5E-14 1.9E-18 122.0 3.6 45 8-57 27-72 (287)
147 PRK14242 phosphate transporter 99.4 9.9E-13 2.2E-17 112.9 10.2 45 8-57 26-76 (253)
148 PRK11248 tauB taurine transpor 99.4 1.1E-13 2.3E-18 119.4 4.1 45 8-57 21-66 (255)
149 PRK15112 antimicrobial peptide 99.4 1.1E-13 2.4E-18 120.0 4.0 45 8-57 33-78 (267)
150 PRK13642 cbiO cobalt transport 99.4 1.1E-13 2.5E-18 120.6 4.0 45 8-57 27-72 (277)
151 PRK11701 phnK phosphonate C-P 99.4 1E-13 2.2E-18 119.5 3.6 43 8-55 26-69 (258)
152 TIGR02769 nickel_nikE nickel i 99.4 1.6E-13 3.4E-18 118.9 4.7 45 8-57 31-76 (265)
153 PRK11176 lipid transporter ATP 99.4 3.8E-13 8.3E-18 128.3 7.8 122 8-136 363-515 (582)
154 TIGR00972 3a0107s01c2 phosphat 99.4 2.4E-13 5.2E-18 116.4 5.7 45 8-57 21-71 (247)
155 cd03267 ABC_NatA_like Similar 99.4 8.8E-14 1.9E-18 118.5 2.9 44 8-56 41-85 (236)
156 cd03235 ABC_Metallic_Cations A 99.4 5.7E-14 1.2E-18 117.5 1.7 44 8-56 19-63 (213)
157 PRK13649 cbiO cobalt transport 99.4 1.3E-13 2.8E-18 120.3 4.0 46 8-58 27-73 (280)
158 PRK10247 putative ABC transpor 99.4 4.2E-13 9.1E-18 113.5 7.0 44 9-57 28-72 (225)
159 PRK14256 phosphate ABC transpo 99.4 2.3E-13 5E-18 116.8 5.4 45 8-57 24-74 (252)
160 cd03231 ABC_CcmA_heme_exporter 99.4 1.7E-13 3.7E-18 113.9 4.4 45 8-57 20-65 (201)
161 PRK14241 phosphate transporter 99.4 1.8E-13 3.9E-18 118.0 4.6 45 8-57 24-74 (258)
162 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 3.8E-13 8.1E-18 131.3 7.3 121 9-136 500-650 (710)
163 PRK14259 phosphate ABC transpo 99.4 1.4E-12 3E-17 113.3 10.0 45 8-57 33-83 (269)
164 PRK14235 phosphate transporter 99.4 2E-13 4.3E-18 118.4 4.6 45 8-57 39-89 (267)
165 PRK10744 pstB phosphate transp 99.4 2.7E-13 5.9E-18 117.0 5.5 45 8-57 33-83 (260)
166 cd03222 ABC_RNaseL_inhibitor T 99.4 4.4E-13 9.4E-18 109.7 6.3 79 10-136 21-106 (177)
167 PRK13543 cytochrome c biogenes 99.4 2E-13 4.4E-18 114.6 4.3 154 8-220 31-189 (214)
168 TIGR03005 ectoine_ehuA ectoine 99.4 1.6E-13 3.5E-18 117.8 3.8 45 8-57 20-65 (252)
169 COG4525 TauB ABC-type taurine 99.4 5E-13 1.1E-17 109.7 6.4 45 8-57 25-70 (259)
170 cd03247 ABCC_cytochrome_bd The 99.4 3.8E-13 8.3E-18 109.7 5.8 104 8-135 22-132 (178)
171 PRK13633 cobalt transporter AT 99.4 1.1E-13 2.5E-18 120.8 2.8 44 9-57 31-75 (280)
172 cd03297 ABC_ModC_molybdenum_tr 99.4 1.4E-13 3.1E-18 115.3 3.3 44 8-57 18-62 (214)
173 PRK13631 cbiO cobalt transport 99.4 1.4E-13 3.1E-18 122.4 3.5 46 8-58 46-92 (320)
174 PRK13648 cbiO cobalt transport 99.4 1.6E-13 3.4E-18 119.1 3.6 44 9-57 30-74 (269)
175 cd03213 ABCG_EPDR ABCG transpo 99.4 9.4E-13 2E-17 109.0 8.0 104 8-135 29-145 (194)
176 PRK14267 phosphate ABC transpo 99.4 1.8E-12 3.9E-17 111.3 10.1 45 8-57 24-74 (253)
177 TIGR03375 type_I_sec_LssB type 99.4 6.4E-13 1.4E-17 129.4 8.2 120 9-135 486-635 (694)
178 PRK10253 iron-enterobactin tra 99.4 1.4E-13 3E-18 119.3 3.1 45 8-57 27-72 (265)
179 TIGR03415 ABC_choXWV_ATP choli 99.4 1.3E-13 2.8E-18 125.3 3.0 41 9-54 45-86 (382)
180 PRK10762 D-ribose transporter 99.4 1.2E-13 2.6E-18 129.8 2.9 45 8-57 24-69 (501)
181 COG1123 ATPase components of v 99.4 3.4E-13 7.3E-18 125.7 5.8 41 10-55 313-354 (539)
182 PRK13645 cbiO cobalt transport 99.4 2.6E-13 5.6E-18 119.0 4.8 44 9-57 32-76 (289)
183 TIGR03410 urea_trans_UrtE urea 99.4 2.1E-12 4.7E-17 109.2 10.2 122 8-135 20-165 (230)
184 PRK09700 D-allose transporter 99.4 9.7E-14 2.1E-18 130.6 2.2 45 8-57 25-70 (510)
185 TIGR02323 CP_lyasePhnK phospho 99.4 1.1E-13 2.3E-18 118.9 2.2 43 8-55 23-66 (253)
186 PRK14269 phosphate ABC transpo 99.4 1.8E-13 3.9E-18 117.1 3.5 45 8-57 22-70 (246)
187 cd03245 ABCC_bacteriocin_expor 99.4 1E-12 2.3E-17 110.4 8.0 45 8-57 24-69 (220)
188 PRK11247 ssuB aliphatic sulfon 99.4 1.7E-12 3.6E-17 112.2 9.4 118 8-137 32-169 (257)
189 PRK11614 livF leucine/isoleuci 99.4 1.2E-13 2.6E-18 117.5 2.3 45 8-57 25-70 (237)
190 PRK10771 thiQ thiamine transpo 99.4 1.2E-13 2.6E-18 117.2 2.3 45 8-57 19-64 (232)
191 PRK13539 cytochrome c biogenes 99.4 3.2E-13 6.9E-18 112.8 4.7 43 9-56 23-66 (207)
192 TIGR01277 thiQ thiamine ABC tr 99.4 1.8E-13 3.8E-18 114.7 3.2 45 8-57 18-63 (213)
193 PRK13652 cbiO cobalt transport 99.4 2.6E-13 5.6E-18 118.3 4.3 44 9-57 25-69 (277)
194 PRK15134 microcin C ABC transp 99.4 2.2E-13 4.8E-18 128.8 4.2 45 8-57 29-79 (529)
195 cd03214 ABC_Iron-Siderophores_ 99.4 7.4E-14 1.6E-18 114.2 0.7 106 8-135 19-131 (180)
196 PRK13541 cytochrome c biogenes 99.4 3.3E-13 7E-18 111.7 4.6 45 8-57 20-65 (195)
197 cd03234 ABCG_White The White s 99.4 3.2E-13 6.9E-18 114.2 4.5 44 8-56 27-74 (226)
198 PRK14240 phosphate transporter 99.4 2.1E-13 4.6E-18 116.8 3.5 45 8-57 23-73 (250)
199 PRK14270 phosphate ABC transpo 99.4 6.1E-13 1.3E-17 114.2 6.2 46 8-58 24-75 (251)
200 PRK14248 phosphate ABC transpo 99.4 2.7E-12 5.9E-17 111.3 10.3 46 8-58 41-92 (268)
201 PRK13640 cbiO cobalt transport 99.4 2.2E-13 4.8E-18 119.1 3.5 44 9-57 28-75 (282)
202 PRK15439 autoinducer 2 ABC tra 99.4 1.7E-13 3.7E-18 129.0 3.0 45 8-57 31-76 (510)
203 cd03237 ABC_RNaseL_inhibitor_d 99.4 2.1E-13 4.5E-18 117.1 3.2 42 10-56 21-63 (246)
204 cd03369 ABCC_NFT1 Domain 2 of 99.4 1.3E-12 2.9E-17 108.8 8.0 45 8-57 28-73 (207)
205 PRK09700 D-allose transporter 99.4 1.8E-13 4E-18 128.7 3.1 45 8-57 283-328 (510)
206 COG4608 AppF ABC-type oligopep 99.4 8.4E-13 1.8E-17 113.2 6.8 98 9-135 34-143 (268)
207 TIGR02324 CP_lyasePhnL phospho 99.4 1.6E-13 3.5E-18 115.7 2.3 39 9-52 29-68 (224)
208 KOG0057 Mitochondrial Fe/S clu 99.4 5.8E-13 1.3E-17 123.0 6.0 121 8-140 372-526 (591)
209 PRK13547 hmuV hemin importer A 99.4 3.9E-13 8.5E-18 117.0 4.7 163 8-220 21-207 (272)
210 TIGR02770 nickel_nikD nickel i 99.4 2.9E-13 6.2E-18 114.8 3.6 45 8-57 6-55 (230)
211 PRK14274 phosphate ABC transpo 99.4 6.8E-13 1.5E-17 114.4 6.0 45 8-57 32-82 (259)
212 PRK03695 vitamin B12-transport 99.4 1.6E-13 3.5E-18 117.7 2.0 158 8-220 16-185 (248)
213 PRK14263 phosphate ABC transpo 99.4 3.3E-12 7.1E-17 110.5 10.1 45 8-57 28-78 (261)
214 cd03252 ABCC_Hemolysin The ABC 99.4 1.8E-12 4E-17 110.1 8.4 44 9-57 23-67 (237)
215 TIGR02857 CydD thiol reductant 99.4 8.4E-13 1.8E-17 124.7 6.9 53 8-67 342-395 (529)
216 PRK14268 phosphate ABC transpo 99.4 3.1E-12 6.7E-17 110.3 9.8 44 9-57 33-82 (258)
217 TIGR01193 bacteriocin_ABC ABC- 99.4 7.5E-13 1.6E-17 129.1 6.7 122 8-136 494-646 (708)
218 PRK10982 galactose/methyl gala 99.4 1.3E-13 2.8E-18 129.2 1.3 45 8-57 18-63 (491)
219 cd03217 ABC_FeS_Assembly ABC-t 99.4 1.6E-12 3.5E-17 108.0 7.7 105 8-135 20-138 (200)
220 COG1132 MdlB ABC-type multidru 99.4 5.7E-13 1.2E-17 126.9 5.5 120 10-136 351-500 (567)
221 cd03300 ABC_PotA_N PotA is an 99.4 4.2E-13 9E-18 113.9 4.1 44 9-57 21-65 (232)
222 PRK10938 putative molybdenum t 99.4 1.8E-13 3.9E-18 128.2 2.0 44 8-56 23-67 (490)
223 PRK14273 phosphate ABC transpo 99.4 5.1E-12 1.1E-16 108.6 10.5 45 8-57 27-77 (254)
224 cd03254 ABCC_Glucan_exporter_l 99.4 1.8E-12 4E-17 109.5 7.6 45 8-57 23-68 (229)
225 PRK10762 D-ribose transporter 99.4 9E-13 2E-17 123.8 6.3 45 8-57 272-317 (501)
226 cd03251 ABCC_MsbA MsbA is an e 99.4 2E-12 4.4E-17 109.6 7.8 45 8-57 22-67 (234)
227 PRK14262 phosphate ABC transpo 99.4 3.6E-13 7.9E-18 115.4 3.2 45 8-57 23-73 (250)
228 cd03299 ABC_ModC_like Archeal 99.4 3.9E-13 8.4E-18 114.4 3.3 45 8-57 19-64 (235)
229 CHL00131 ycf16 sulfate ABC tra 99.3 4.5E-12 9.8E-17 108.7 9.8 45 8-57 27-74 (252)
230 PRK10261 glutathione transport 99.3 2.9E-13 6.4E-18 130.3 2.7 45 8-57 344-389 (623)
231 PRK14238 phosphate transporter 99.3 4.7E-13 1E-17 116.4 3.7 44 9-57 45-94 (271)
232 COG3845 ABC-type uncharacteriz 99.3 8.9E-13 1.9E-17 120.6 5.6 164 8-221 24-193 (501)
233 PRK13549 xylose transporter AT 99.3 2.1E-13 4.6E-18 128.2 1.6 45 8-57 25-72 (506)
234 TIGR00958 3a01208 Conjugate Tr 99.3 1E-12 2.2E-17 128.4 6.4 122 8-136 501-652 (711)
235 PRK14254 phosphate ABC transpo 99.3 5.4E-12 1.2E-16 110.5 10.4 44 9-57 60-109 (285)
236 PRK11288 araG L-arabinose tran 99.3 2.7E-13 5.8E-18 127.4 2.2 45 8-57 24-69 (501)
237 PRK09580 sufC cysteine desulfu 99.3 9.8E-13 2.1E-17 112.4 5.5 45 8-57 21-68 (248)
238 PRK15056 manganese/iron transp 99.3 1.5E-13 3.3E-18 119.4 0.4 45 8-57 27-72 (272)
239 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 2.4E-12 5.3E-17 109.4 7.7 45 8-57 23-68 (238)
240 PRK14272 phosphate ABC transpo 99.3 1.3E-12 2.8E-17 112.0 6.1 45 8-57 24-74 (252)
241 PRK10419 nikE nickel transport 99.3 6.6E-13 1.4E-17 115.3 4.2 45 8-57 32-77 (268)
242 TIGR03740 galliderm_ABC gallid 99.3 1.1E-12 2.4E-17 110.6 5.4 45 8-57 20-65 (223)
243 PRK13657 cyclic beta-1,2-gluca 99.3 1.6E-12 3.4E-17 124.4 7.0 123 8-137 355-507 (588)
244 COG4555 NatA ABC-type Na+ tran 99.3 1.7E-12 3.8E-17 106.8 6.3 122 11-140 25-172 (245)
245 cd03253 ABCC_ATM1_transporter 99.3 8.2E-13 1.8E-17 112.1 4.6 44 9-57 22-66 (236)
246 TIGR01846 type_I_sec_HlyB type 99.3 2E-12 4.4E-17 125.9 7.8 122 8-136 477-628 (694)
247 cd03232 ABC_PDR_domain2 The pl 99.3 3.9E-12 8.5E-17 105.1 8.4 102 9-135 28-142 (192)
248 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 4.7E-13 1E-17 113.2 2.7 43 9-56 43-86 (224)
249 PRK14239 phosphate transporter 99.3 9.2E-13 2E-17 113.0 4.4 45 8-57 25-75 (252)
250 PRK14251 phosphate ABC transpo 99.3 2.1E-12 4.6E-17 110.7 6.6 45 8-57 24-74 (251)
251 COG1123 ATPase components of v 99.3 1.1E-12 2.3E-17 122.5 5.1 68 8-78 29-97 (539)
252 PRK14237 phosphate transporter 99.3 8.5E-13 1.8E-17 114.5 4.1 45 8-57 40-90 (267)
253 PRK14245 phosphate ABC transpo 99.3 2.2E-12 4.7E-17 110.6 6.6 49 8-58 23-74 (250)
254 PRK13549 xylose transporter AT 99.3 6.1E-13 1.3E-17 125.1 3.3 166 8-220 282-457 (506)
255 TIGR02203 MsbA_lipidA lipid A 99.3 2.9E-12 6.3E-17 121.9 7.8 121 9-136 353-504 (571)
256 PRK15439 autoinducer 2 ABC tra 99.3 7.2E-13 1.6E-17 124.8 3.7 45 8-57 283-328 (510)
257 PRK11160 cysteine/glutathione 99.3 2.3E-12 5E-17 123.0 7.1 121 9-136 361-510 (574)
258 TIGR00968 3a0106s01 sulfate AB 99.3 9.3E-13 2E-17 112.2 3.9 44 9-57 21-65 (237)
259 cd03244 ABCC_MRP_domain2 Domai 99.3 4.2E-12 9.1E-17 106.7 7.7 45 8-57 24-69 (221)
260 PRK09984 phosphonate/organopho 99.3 8E-12 1.7E-16 107.9 9.6 45 8-57 24-72 (262)
261 PRK10982 galactose/methyl gala 99.3 9.8E-13 2.1E-17 123.3 4.2 45 8-57 268-313 (491)
262 PRK11288 araG L-arabinose tran 99.3 1.1E-12 2.4E-17 123.2 4.6 45 8-57 273-318 (501)
263 PRK14260 phosphate ABC transpo 99.3 1.1E-11 2.4E-16 107.0 10.2 45 8-57 27-77 (259)
264 TIGR03771 anch_rpt_ABC anchore 99.3 5.5E-13 1.2E-17 112.7 2.0 41 11-56 3-44 (223)
265 PRK14249 phosphate ABC transpo 99.3 1.1E-11 2.4E-16 106.4 10.0 45 8-57 24-74 (251)
266 PRK14275 phosphate ABC transpo 99.3 1.1E-11 2.4E-16 108.6 10.2 44 9-57 60-109 (286)
267 PRK10418 nikD nickel transport 99.3 1E-12 2.3E-17 113.0 3.6 45 8-57 23-72 (254)
268 TIGR02204 MsbA_rel ABC transpo 99.3 4.1E-12 8.9E-17 121.0 8.0 121 8-135 360-510 (576)
269 COG4181 Predicted ABC-type tra 99.3 4.6E-12 1E-16 102.1 7.0 122 8-136 30-181 (228)
270 TIGR02633 xylG D-xylose ABC tr 99.3 1.6E-12 3.5E-17 122.1 5.0 45 8-57 21-68 (500)
271 TIGR02633 xylG D-xylose ABC tr 99.3 2.1E-12 4.6E-17 121.2 5.8 45 8-57 280-326 (500)
272 PRK14265 phosphate ABC transpo 99.3 1.1E-11 2.4E-16 107.9 9.9 45 8-57 40-90 (274)
273 PRK14244 phosphate ABC transpo 99.3 9.3E-13 2E-17 113.0 3.1 45 8-57 25-75 (251)
274 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 4E-12 8.6E-17 100.5 6.4 78 8-135 20-104 (144)
275 PRK13409 putative ATPase RIL; 99.3 2.4E-13 5.1E-18 130.1 -0.8 36 10-50 95-130 (590)
276 PRK14258 phosphate ABC transpo 99.3 1.3E-11 2.8E-16 106.7 10.0 45 8-57 27-77 (261)
277 COG4988 CydD ABC-type transpor 99.3 2.5E-12 5.3E-17 119.9 5.9 122 8-136 341-491 (559)
278 PRK10522 multidrug transporter 99.3 4E-12 8.6E-17 120.7 7.0 118 8-136 343-484 (547)
279 PRK14243 phosphate transporter 99.3 1.5E-11 3.3E-16 106.4 10.1 45 8-57 30-80 (264)
280 TIGR02982 heterocyst_DevA ABC 99.3 9.9E-13 2.2E-17 110.7 2.6 43 10-57 27-70 (220)
281 KOG0055 Multidrug/pheromone ex 99.3 4E-12 8.6E-17 127.0 7.2 116 10-136 375-524 (1228)
282 cd03248 ABCC_TAP TAP, the Tran 99.3 4.3E-12 9.4E-17 107.1 6.3 45 8-57 34-79 (226)
283 PRK14266 phosphate ABC transpo 99.3 1.4E-12 3E-17 111.8 3.4 45 8-57 23-73 (250)
284 cd03223 ABCD_peroxisomal_ALDP 99.3 5.4E-12 1.2E-16 102.0 6.6 95 8-135 21-125 (166)
285 PRK14236 phosphate transporter 99.3 1.8E-11 3.8E-16 106.5 10.2 45 8-57 45-95 (272)
286 PRK10789 putative multidrug tr 99.3 5.5E-12 1.2E-16 120.3 7.5 121 9-136 336-486 (569)
287 TIGR01842 type_I_sec_PrtD type 99.3 9.9E-12 2.1E-16 117.9 9.1 120 9-135 339-488 (544)
288 PRK14255 phosphate ABC transpo 99.3 2.4E-11 5.3E-16 104.2 10.7 45 8-57 25-75 (252)
289 TIGR01192 chvA glucan exporter 99.3 4.9E-12 1.1E-16 121.0 6.9 121 9-136 356-506 (585)
290 cd03236 ABC_RNaseL_inhibitor_d 99.3 1.4E-12 3.1E-17 112.6 2.8 35 11-50 23-57 (255)
291 PRK14264 phosphate ABC transpo 99.3 1.9E-11 4.2E-16 108.1 10.1 44 9-57 66-115 (305)
292 PRK14261 phosphate ABC transpo 99.3 2.3E-12 5E-17 110.7 4.1 45 9-58 27-77 (253)
293 COG1101 PhnK ABC-type uncharac 99.3 4.9E-12 1.1E-16 105.2 5.8 55 8-69 26-81 (263)
294 TIGR01194 cyc_pep_trnsptr cycl 99.3 6E-12 1.3E-16 119.7 7.3 120 8-136 362-505 (555)
295 PRK10261 glutathione transport 99.3 2.6E-12 5.6E-17 123.8 4.5 44 8-56 36-80 (623)
296 cd00267 ABC_ATPase ABC (ATP-bi 99.3 9.6E-12 2.1E-16 99.3 7.0 89 8-135 19-114 (157)
297 PF00005 ABC_tran: ABC transpo 99.3 1.8E-12 4E-17 100.7 2.7 116 8-130 5-137 (137)
298 PTZ00265 multidrug resistance 99.3 5.7E-12 1.2E-16 131.0 6.9 122 8-136 1188-1393(1466)
299 PRK14253 phosphate ABC transpo 99.3 2.8E-12 6.2E-17 109.8 3.8 45 8-57 23-73 (249)
300 COG4152 ABC-type uncharacteriz 99.3 3.1E-12 6.8E-17 108.1 3.8 45 8-57 22-67 (300)
301 PLN03232 ABC transporter C fam 99.3 1E-11 2.2E-16 129.7 8.5 121 9-136 1257-1406(1495)
302 TIGR03269 met_CoM_red_A2 methy 99.3 1.8E-12 3.9E-17 122.3 2.6 40 8-52 20-62 (520)
303 PLN03130 ABC transporter C fam 99.3 1.1E-11 2.3E-16 130.1 8.4 122 8-136 1259-1409(1622)
304 cd03290 ABCC_SUR1_N The SUR do 99.3 7.7E-12 1.7E-16 105.1 6.0 45 8-57 21-66 (218)
305 COG4172 ABC-type uncharacteriz 99.3 4.6E-12 1E-16 113.7 4.8 119 9-135 308-460 (534)
306 cd03289 ABCC_CFTR2 The CFTR su 99.3 1.5E-11 3.3E-16 107.3 7.9 121 8-137 24-174 (275)
307 PRK14257 phosphate ABC transpo 99.3 6.2E-12 1.4E-16 112.4 5.4 50 8-57 102-152 (329)
308 TIGR00957 MRP_assoc_pro multi 99.2 1.4E-11 3.1E-16 128.8 8.6 121 9-136 1307-1456(1522)
309 PRK13546 teichoic acids export 99.2 3.3E-12 7.1E-17 110.8 3.1 42 8-54 44-86 (264)
310 cd03288 ABCC_SUR2 The SUR doma 99.2 1.3E-11 2.8E-16 106.4 6.9 44 9-57 42-86 (257)
311 PRK14271 phosphate ABC transpo 99.2 3.8E-11 8.3E-16 104.7 9.9 45 8-57 41-91 (276)
312 TIGR01257 rim_protein retinal- 99.2 2.8E-12 6.1E-17 135.3 3.1 44 9-57 1960-2004(2272)
313 PRK09544 znuC high-affinity zi 99.2 1.2E-11 2.5E-16 106.6 6.2 113 8-137 24-156 (251)
314 TIGR01187 potA spermidine/putr 99.2 2.1E-12 4.5E-17 115.2 1.7 34 19-57 1-35 (325)
315 KOG0055 Multidrug/pheromone ex 99.2 1.3E-11 2.9E-16 123.3 7.2 120 9-135 1011-1160(1228)
316 COG4987 CydC ABC-type transpor 99.2 6.7E-12 1.4E-16 115.9 4.6 122 10-136 360-509 (573)
317 COG4598 HisP ABC-type histidin 99.2 2.7E-12 5.7E-17 104.3 1.6 45 8-57 26-71 (256)
318 PRK10938 putative molybdenum t 99.2 2.2E-12 4.8E-17 120.8 0.5 44 8-56 280-325 (490)
319 PRK15134 microcin C ABC transp 99.2 6.3E-12 1.4E-16 118.9 3.5 44 8-57 306-350 (529)
320 COG4778 PhnL ABC-type phosphon 99.2 1.8E-11 4E-16 98.5 5.5 162 10-221 33-205 (235)
321 PTZ00243 ABC transporter; Prov 99.2 2.5E-11 5.4E-16 127.1 8.1 121 10-137 1332-1482(1560)
322 TIGR03269 met_CoM_red_A2 methy 99.2 4.8E-11 1E-15 112.7 9.1 42 8-54 304-347 (520)
323 PRK14252 phosphate ABC transpo 99.2 8.2E-11 1.8E-15 101.8 9.7 43 9-56 37-85 (265)
324 PRK14246 phosphate ABC transpo 99.2 1.1E-10 2.3E-15 100.9 10.3 37 9-50 31-67 (257)
325 TIGR01257 rim_protein retinal- 99.2 4.2E-12 9E-17 134.0 1.7 45 8-57 950-995 (2272)
326 PRK13409 putative ATPase RIL; 99.2 1.3E-11 2.8E-16 118.1 4.6 37 10-51 361-397 (590)
327 cd03250 ABCC_MRP_domain1 Domai 99.2 1.9E-11 4.2E-16 101.6 5.0 119 8-136 25-162 (204)
328 COG4133 CcmA ABC-type transpor 99.2 8E-12 1.7E-16 101.8 2.4 43 10-57 24-67 (209)
329 PLN03211 ABC transporter G-25; 99.2 2.9E-11 6.2E-16 117.2 6.5 42 10-56 90-134 (659)
330 PRK13545 tagH teichoic acids e 99.2 1.1E-11 2.4E-16 116.0 3.2 43 8-55 44-87 (549)
331 PRK11819 putative ABC transpor 99.2 1.5E-10 3.3E-15 110.2 10.1 39 8-51 27-65 (556)
332 PRK10535 macrolide transporter 99.1 1.9E-11 4.1E-16 118.4 3.2 46 8-58 28-74 (648)
333 PTZ00265 multidrug resistance 99.1 9E-11 1.9E-15 122.2 8.1 45 8-57 405-451 (1466)
334 PRK15177 Vi polysaccharide exp 99.1 5.8E-11 1.2E-15 99.8 5.5 114 8-136 7-139 (213)
335 COG1119 ModF ABC-type molybden 99.1 9.5E-12 2E-16 105.2 0.7 159 8-217 51-220 (257)
336 COG0488 Uup ATPase components 99.1 3E-10 6.5E-15 107.1 10.6 44 8-56 23-68 (530)
337 PRK15064 ABC transporter ATP-b 99.1 1.4E-10 3.1E-15 109.7 8.1 41 8-53 21-62 (530)
338 PRK15064 ABC transporter ATP-b 99.1 1.9E-10 4.1E-15 108.8 8.9 111 8-135 339-472 (530)
339 TIGR01271 CFTR_protein cystic 99.1 1.4E-10 3.1E-15 121.1 8.1 121 9-137 1240-1389(1490)
340 PRK11147 ABC transporter ATPas 99.1 2.5E-10 5.3E-15 110.4 8.9 123 8-137 339-476 (635)
341 PRK10636 putative ABC transpor 99.1 8.1E-11 1.8E-15 113.8 5.4 42 8-54 21-63 (638)
342 PRK10636 putative ABC transpor 99.1 1.5E-10 3.3E-15 111.9 7.2 115 8-139 332-468 (638)
343 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 3.3E-10 7.1E-15 107.8 9.3 39 8-51 25-63 (552)
344 PRK11147 ABC transporter ATPas 99.1 1.2E-10 2.7E-15 112.5 6.4 41 8-53 23-64 (635)
345 KOG0054 Multidrug resistance-a 99.1 1.6E-10 3.4E-15 117.8 7.3 120 10-136 1162-1310(1381)
346 COG4148 ModC ABC-type molybdat 99.1 2.7E-10 5.8E-15 98.2 7.5 117 10-135 20-162 (352)
347 COG4161 ArtP ABC-type arginine 99.1 7.7E-11 1.7E-15 94.3 3.5 38 11-53 25-63 (242)
348 TIGR00956 3a01205 Pleiotropic 99.1 7.3E-11 1.6E-15 122.5 4.4 156 10-220 785-954 (1394)
349 TIGR00955 3a01204 The Eye Pigm 99.1 7.9E-11 1.7E-15 113.5 4.2 162 8-220 45-218 (617)
350 cd03291 ABCC_CFTR1 The CFTR su 99.1 1.8E-10 4E-15 100.8 5.7 41 8-53 57-98 (282)
351 COG4107 PhnK ABC-type phosphon 99.1 3.3E-10 7.2E-15 91.7 6.6 119 10-135 28-185 (258)
352 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 4.1E-10 9E-15 107.1 8.2 122 8-136 342-478 (552)
353 PRK11819 putative ABC transpor 99.1 5.2E-10 1.1E-14 106.6 8.8 111 8-136 344-480 (556)
354 KOG0061 Transporter, ABC super 99.0 1.6E-10 3.6E-15 111.0 5.0 161 11-221 53-223 (613)
355 COG4136 ABC-type uncharacteriz 99.0 7.4E-10 1.6E-14 87.7 7.3 124 10-135 24-168 (213)
356 KOG0056 Heavy metal exporter H 99.0 1.2E-10 2.6E-15 106.9 2.7 119 11-136 561-709 (790)
357 TIGR00956 3a01205 Pleiotropic 99.0 2.6E-10 5.6E-15 118.5 5.2 168 10-220 83-262 (1394)
358 cd03238 ABC_UvrA The excision 99.0 1.8E-10 4E-15 94.1 3.1 28 8-35 15-42 (176)
359 TIGR00954 3a01203 Peroxysomal 99.0 9E-10 2E-14 106.9 8.2 38 9-51 473-510 (659)
360 COG4615 PvdE ABC-type sideroph 99.0 1.6E-09 3.4E-14 97.4 8.2 46 6-56 341-387 (546)
361 COG4172 ABC-type uncharacteriz 99.0 6.4E-10 1.4E-14 100.1 5.6 68 9-78 31-99 (534)
362 COG4674 Uncharacterized ABC-ty 99.0 2.6E-11 5.6E-16 99.6 -3.5 126 8-146 25-154 (249)
363 COG4138 BtuD ABC-type cobalami 99.0 1.4E-10 2.9E-15 94.0 0.6 62 5-74 16-78 (248)
364 PLN03073 ABC transporter F fam 99.0 3.7E-10 8.1E-15 110.3 3.6 39 8-51 529-567 (718)
365 PLN03140 ABC transporter G fam 98.9 1E-09 2.2E-14 114.3 6.2 43 10-57 187-233 (1470)
366 COG0488 Uup ATPase components 98.9 1.4E-09 3E-14 102.7 6.2 115 8-140 342-478 (530)
367 COG5265 ATM1 ABC-type transpor 98.9 5.8E-10 1.3E-14 100.7 3.4 117 10-137 285-435 (497)
368 PLN03140 ABC transporter G fam 98.9 4.8E-10 1E-14 116.7 3.3 162 10-220 902-1071(1470)
369 PLN03130 ABC transporter C fam 98.9 1.9E-09 4.1E-14 113.4 6.3 115 9-136 638-775 (1622)
370 PLN03232 ABC transporter C fam 98.9 2.1E-09 4.5E-14 112.6 6.5 115 9-136 638-775 (1495)
371 COG4586 ABC-type uncharacteriz 98.9 2.6E-09 5.6E-14 91.9 5.7 43 9-56 45-88 (325)
372 COG1245 Predicted ATPase, RNas 98.9 2.4E-09 5.3E-14 97.6 5.5 142 11-218 364-505 (591)
373 COG4167 SapF ABC-type antimicr 98.9 7.5E-09 1.6E-13 84.5 7.2 44 8-56 33-77 (267)
374 TIGR01271 CFTR_protein cystic 98.8 2.5E-09 5.5E-14 111.9 5.4 116 9-137 447-584 (1490)
375 COG1134 TagH ABC-type polysacc 98.8 7.2E-10 1.6E-14 93.8 0.5 40 9-53 48-88 (249)
376 cd03278 ABC_SMC_barmotin Barmo 98.8 5.8E-09 1.2E-13 86.7 5.5 118 7-135 16-151 (197)
377 PRK00300 gmk guanylate kinase; 98.8 2.9E-09 6.3E-14 88.4 3.6 29 11-39 2-30 (205)
378 TIGR00957 MRP_assoc_pro multi 98.8 4.8E-09 1E-13 110.1 5.1 114 9-136 659-795 (1522)
379 PLN03073 ABC transporter F fam 98.8 8.8E-09 1.9E-13 100.8 6.0 46 8-55 197-243 (718)
380 PTZ00243 ABC transporter; Prov 98.7 1E-08 2.2E-13 107.7 5.5 116 9-136 681-817 (1560)
381 TIGR03263 guanyl_kin guanylate 98.7 7E-09 1.5E-13 84.2 3.1 97 14-119 1-110 (180)
382 cd00071 GMPK Guanosine monopho 98.7 7.3E-09 1.6E-13 81.2 2.7 87 16-110 1-97 (137)
383 COG4178 ABC-type uncharacteriz 98.6 7.2E-08 1.6E-12 91.5 8.0 121 6-135 411-549 (604)
384 KOG0054 Multidrug resistance-a 98.6 2.6E-08 5.6E-13 101.9 4.2 113 10-136 543-678 (1381)
385 cd03240 ABC_Rad50 The catalyti 98.6 3.5E-08 7.5E-13 82.4 4.2 24 11-35 20-43 (204)
386 cd03272 ABC_SMC3_euk Eukaryoti 98.6 1.2E-07 2.6E-12 80.8 7.4 25 13-37 22-46 (243)
387 cd03270 ABC_UvrA_I The excisio 98.6 4E-08 8.6E-13 83.3 4.2 33 187-220 159-191 (226)
388 KOG0059 Lipid exporter ABCA1 a 98.6 3.4E-08 7.4E-13 98.8 4.1 46 7-57 584-630 (885)
389 cd03279 ABC_sbcCD SbcCD and ot 98.5 2.2E-08 4.8E-13 84.0 1.2 33 187-220 153-185 (213)
390 KOG0927 Predicted transporter 98.5 1.7E-07 3.7E-12 87.2 6.3 37 10-51 412-448 (614)
391 cd03271 ABC_UvrA_II The excisi 98.5 1E-07 2.2E-12 82.6 4.6 33 187-220 192-224 (261)
392 PRK04220 2-phosphoglycerate ki 98.5 7.9E-08 1.7E-12 84.5 3.9 88 13-110 91-197 (301)
393 PRK05057 aroK shikimate kinase 98.5 2.4E-07 5.1E-12 75.4 6.3 80 13-112 3-83 (172)
394 KOG0062 ATPase component of AB 98.5 8.2E-08 1.8E-12 88.7 3.8 29 8-36 100-128 (582)
395 COG0194 Gmk Guanylate kinase [ 98.5 9.3E-08 2E-12 78.1 3.3 100 13-122 3-114 (191)
396 cd03273 ABC_SMC2_euk Eukaryoti 98.4 5.1E-07 1.1E-11 77.5 6.1 26 13-38 24-49 (251)
397 PF13207 AAA_17: AAA domain; P 98.4 1.5E-07 3.2E-12 71.3 2.2 32 16-47 1-32 (121)
398 cd00820 PEPCK_HprK Phosphoenol 98.4 2.3E-07 4.9E-12 69.7 3.1 39 8-57 9-48 (107)
399 TIGR03238 dnd_assoc_3 dnd syst 98.4 2.8E-07 6.1E-12 85.4 4.2 51 8-67 26-78 (504)
400 PRK14737 gmk guanylate kinase; 98.4 2.6E-07 5.7E-12 76.1 3.1 88 13-109 3-100 (186)
401 KOG0927 Predicted transporter 98.3 5.4E-07 1.2E-11 83.9 5.3 28 10-37 97-124 (614)
402 PRK00131 aroK shikimate kinase 98.3 8.4E-07 1.8E-11 71.1 5.0 37 11-47 1-37 (175)
403 TIGR00235 udk uridine kinase. 98.3 5.2E-07 1.1E-11 75.3 3.8 31 9-39 1-31 (207)
404 cd03275 ABC_SMC1_euk Eukaryoti 98.3 3E-07 6.4E-12 78.9 1.4 34 186-220 178-211 (247)
405 KOG0060 Long-chain acyl-CoA tr 98.3 1.9E-06 4.1E-11 80.9 6.7 37 9-50 456-492 (659)
406 PRK10078 ribose 1,5-bisphospho 98.2 1.1E-06 2.4E-11 72.1 4.1 28 14-41 2-29 (186)
407 PRK09825 idnK D-gluconate kina 98.2 1.3E-06 2.7E-11 71.4 4.2 29 13-41 2-30 (176)
408 cd01130 VirB11-like_ATPase Typ 98.2 1.2E-06 2.5E-11 72.1 3.7 36 10-50 21-56 (186)
409 PRK13948 shikimate kinase; Pro 98.2 2.5E-06 5.4E-11 70.1 5.4 38 11-48 7-44 (182)
410 cd03276 ABC_SMC6_euk Eukaryoti 98.2 5.4E-06 1.2E-10 68.9 7.3 25 15-39 22-46 (198)
411 PRK05480 uridine/cytidine kina 98.1 2.1E-06 4.5E-11 71.6 4.1 28 11-38 3-30 (209)
412 PF00625 Guanylate_kin: Guanyl 98.1 6.9E-07 1.5E-11 73.1 0.9 91 13-111 1-101 (183)
413 PRK13949 shikimate kinase; Pro 98.1 2.7E-06 5.8E-11 69.0 4.3 32 16-47 3-34 (169)
414 PRK08118 topology modulation p 98.1 2E-06 4.2E-11 69.7 3.3 32 16-47 3-34 (167)
415 PRK07261 topology modulation p 98.1 2.5E-06 5.3E-11 69.3 3.8 33 16-48 2-34 (171)
416 KOG0065 Pleiotropic drug resis 98.1 1.6E-06 3.6E-11 87.8 3.1 43 11-56 814-857 (1391)
417 COG0703 AroK Shikimate kinase 98.1 2.7E-06 5.8E-11 69.0 3.5 86 16-121 4-93 (172)
418 TIGR01313 therm_gnt_kin carboh 98.1 2.7E-06 5.9E-11 68.0 3.2 32 17-48 1-32 (163)
419 TIGR02858 spore_III_AA stage I 98.1 3.1E-06 6.7E-11 73.7 3.8 38 15-57 112-150 (270)
420 PRK06217 hypothetical protein; 98.0 4E-06 8.7E-11 68.6 3.8 33 16-48 3-35 (183)
421 PF13555 AAA_29: P-loop contai 98.0 4.1E-06 9E-11 56.6 3.1 24 13-36 22-45 (62)
422 PRK14527 adenylate kinase; Pro 98.0 4.1E-06 8.8E-11 69.0 3.6 37 9-45 1-37 (191)
423 KOG0064 Peroxisomal long-chain 98.0 5.4E-06 1.2E-10 77.3 4.6 28 10-37 504-531 (728)
424 PF13671 AAA_33: AAA domain; P 98.0 2.5E-06 5.5E-11 66.2 2.1 32 16-47 1-32 (143)
425 PRK14738 gmk guanylate kinase; 98.0 4.3E-06 9.3E-11 69.9 3.3 26 11-36 10-35 (206)
426 COG1129 MglA ABC-type sugar tr 98.0 1.4E-05 2.9E-10 74.8 6.9 167 9-221 280-454 (500)
427 TIGR01360 aden_kin_iso1 adenyl 98.0 4.2E-06 9.1E-11 68.0 3.0 31 14-44 3-33 (188)
428 cd00464 SK Shikimate kinase (S 98.0 7.7E-06 1.7E-10 64.3 4.4 32 17-48 2-33 (154)
429 cd03283 ABC_MutS-like MutS-lik 98.0 4.4E-06 9.5E-11 69.5 2.9 29 8-36 19-47 (199)
430 PRK06002 fliI flagellum-specif 98.0 1.5E-05 3.3E-10 73.8 6.7 42 10-56 161-206 (450)
431 TIGR00554 panK_bact pantothena 98.0 4.5E-06 9.7E-11 73.4 3.0 27 11-37 59-85 (290)
432 PRK06547 hypothetical protein; 98.0 6.1E-06 1.3E-10 67.2 3.6 38 11-48 12-49 (172)
433 cd02020 CMPK Cytidine monophos 98.0 5.3E-06 1.1E-10 64.6 3.1 31 16-46 1-31 (147)
434 PRK14530 adenylate kinase; Pro 98.0 6.7E-06 1.5E-10 69.0 3.9 33 14-46 3-35 (215)
435 TIGR02322 phosphon_PhnN phosph 98.0 5.3E-06 1.2E-10 67.3 3.1 26 14-39 1-26 (179)
436 cd02023 UMPK Uridine monophosp 98.0 5.1E-06 1.1E-10 68.6 2.9 23 16-38 1-23 (198)
437 TIGR00017 cmk cytidylate kinas 97.9 5.7E-06 1.2E-10 69.8 3.0 35 16-52 4-38 (217)
438 PRK09270 nucleoside triphospha 97.9 5.2E-06 1.1E-10 70.4 2.8 34 11-49 30-63 (229)
439 PRK03839 putative kinase; Prov 97.9 7.7E-06 1.7E-10 66.5 3.3 32 16-47 2-33 (180)
440 smart00072 GuKc Guanylate kina 97.9 1.3E-05 2.8E-10 65.7 4.6 89 14-111 2-101 (184)
441 COG0572 Udk Uridine kinase [Nu 97.9 2.8E-05 6.1E-10 65.3 6.6 37 12-48 6-45 (218)
442 cd02021 GntK Gluconate kinase 97.9 9.2E-06 2E-10 63.9 3.5 32 16-47 1-32 (150)
443 cd02025 PanK Pantothenate kina 97.9 7E-06 1.5E-10 69.4 2.7 23 16-38 1-23 (220)
444 COG4170 SapD ABC-type antimicr 97.9 1.3E-05 2.7E-10 67.2 4.1 68 8-78 27-95 (330)
445 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 9.3E-06 2E-10 66.0 3.3 32 16-47 1-32 (183)
446 COG1245 Predicted ATPase, RNas 97.9 1.6E-05 3.5E-10 73.1 5.1 28 11-38 97-124 (591)
447 PRK00635 excinuclease ABC subu 97.9 5.7E-06 1.2E-10 87.2 2.5 34 186-220 831-864 (1809)
448 PRK13946 shikimate kinase; Pro 97.9 1.7E-05 3.6E-10 65.0 4.8 34 14-47 10-43 (184)
449 COG0283 Cmk Cytidylate kinase 97.9 9.2E-06 2E-10 67.9 3.0 36 15-52 5-40 (222)
450 COG0563 Adk Adenylate kinase a 97.9 1E-05 2.2E-10 66.3 2.9 35 16-52 2-36 (178)
451 cd03243 ABC_MutS_homologs The 97.9 8.7E-06 1.9E-10 67.6 2.5 30 7-36 22-51 (202)
452 PRK08233 hypothetical protein; 97.8 1.6E-05 3.6E-10 64.2 4.0 26 14-39 3-28 (182)
453 PLN02199 shikimate kinase 97.8 2.2E-05 4.7E-10 69.0 4.7 80 12-111 100-181 (303)
454 smart00382 AAA ATPases associa 97.8 1.7E-05 3.8E-10 59.6 3.5 26 14-39 2-27 (148)
455 PRK06762 hypothetical protein; 97.8 1.3E-05 2.7E-10 64.3 2.9 25 14-38 2-26 (166)
456 cd03239 ABC_SMC_head The struc 97.8 1.5E-05 3.2E-10 65.3 3.2 24 15-38 23-46 (178)
457 PRK05541 adenylylsulfate kinas 97.8 1.4E-05 3.1E-10 64.7 3.1 29 11-39 4-32 (176)
458 KOG3354 Gluconate kinase [Carb 97.8 1.8E-05 3.9E-10 63.0 3.3 35 14-48 12-46 (191)
459 cd02024 NRK1 Nicotinamide ribo 97.8 1.7E-05 3.7E-10 65.4 3.4 33 16-48 1-34 (187)
460 PRK13947 shikimate kinase; Pro 97.8 1.8E-05 3.9E-10 63.6 3.4 33 16-48 3-35 (171)
461 PRK13477 bifunctional pantoate 97.8 2.1E-05 4.6E-10 74.1 4.3 41 12-54 282-322 (512)
462 PF00004 AAA: ATPase family as 97.8 1.5E-05 3.3E-10 60.5 2.8 32 17-48 1-32 (132)
463 cd02026 PRK Phosphoribulokinas 97.8 1.6E-05 3.6E-10 69.3 3.3 31 16-51 1-31 (273)
464 KOG0066 eIF2-interacting prote 97.8 3.7E-05 8E-10 70.6 5.5 33 13-50 612-644 (807)
465 PRK14532 adenylate kinase; Pro 97.8 2.2E-05 4.7E-10 64.2 3.6 31 17-47 3-33 (188)
466 PLN02200 adenylate kinase fami 97.8 2.9E-05 6.3E-10 66.3 4.5 35 11-45 40-74 (234)
467 cd00227 CPT Chloramphenicol (C 97.8 2.3E-05 4.9E-10 63.6 3.5 29 13-41 1-29 (175)
468 PLN02772 guanylate kinase 97.8 2.6E-05 5.6E-10 71.0 4.2 88 13-108 134-231 (398)
469 PF00485 PRK: Phosphoribulokin 97.7 1.5E-05 3.3E-10 65.7 2.2 24 16-39 1-24 (194)
470 TIGR00150 HI0065_YjeE ATPase, 97.7 3.4E-05 7.3E-10 60.2 4.0 30 11-40 19-48 (133)
471 cd03274 ABC_SMC4_euk Eukaryoti 97.7 2.1E-05 4.5E-10 66.1 2.9 22 15-36 26-47 (212)
472 COG1102 Cmk Cytidylate kinase 97.7 2.2E-05 4.9E-10 62.9 2.9 36 16-53 2-37 (179)
473 cd02019 NK Nucleoside/nucleoti 97.7 2.8E-05 6E-10 53.5 3.0 23 16-38 1-23 (69)
474 PRK00889 adenylylsulfate kinas 97.7 2.6E-05 5.5E-10 63.1 3.1 27 12-38 2-28 (175)
475 PRK07196 fliI flagellum-specif 97.7 4E-05 8.7E-10 70.9 4.6 29 9-37 150-178 (434)
476 PTZ00301 uridine kinase; Provi 97.7 2.5E-05 5.3E-10 65.7 2.9 24 15-38 4-27 (210)
477 cd03280 ABC_MutS2 MutS2 homolo 97.7 2.5E-05 5.4E-10 64.8 2.9 30 6-35 19-49 (200)
478 TIGR02173 cyt_kin_arch cytidyl 97.7 2.7E-05 6E-10 62.2 3.1 31 16-46 2-32 (171)
479 PRK00349 uvrA excinuclease ABC 97.7 6.4E-05 1.4E-09 75.7 6.1 33 187-220 853-885 (943)
480 PTZ00088 adenylate kinase 1; P 97.7 4.3E-05 9.3E-10 65.0 4.2 33 16-48 8-40 (229)
481 cd01428 ADK Adenylate kinase ( 97.7 3.5E-05 7.5E-10 63.0 3.5 31 17-47 2-32 (194)
482 PRK10416 signal recognition pa 97.7 2.8E-05 6.2E-10 69.3 3.2 41 11-56 111-152 (318)
483 PRK14731 coaE dephospho-CoA ki 97.7 4E-05 8.7E-10 64.1 3.9 31 15-46 6-36 (208)
484 PRK04182 cytidylate kinase; Pr 97.7 2.9E-05 6.2E-10 62.5 2.9 30 16-45 2-31 (180)
485 PRK03731 aroL shikimate kinase 97.7 3.9E-05 8.5E-10 61.7 3.5 34 15-48 3-36 (171)
486 PRK14730 coaE dephospho-CoA ki 97.7 4.1E-05 8.9E-10 63.5 3.6 33 16-48 3-35 (195)
487 PRK08154 anaerobic benzoate ca 97.7 5.2E-05 1.1E-09 67.3 4.4 38 9-46 128-165 (309)
488 PRK11545 gntK gluconate kinase 97.7 2.7E-05 5.8E-10 62.7 2.4 27 20-46 1-27 (163)
489 PRK14531 adenylate kinase; Pro 97.6 4.6E-05 9.9E-10 62.3 3.6 30 16-45 4-33 (183)
490 TIGR02524 dot_icm_DotB Dot/Icm 97.6 0.00011 2.4E-09 66.5 6.4 26 12-37 132-157 (358)
491 PRK03846 adenylylsulfate kinas 97.6 4.3E-05 9.4E-10 63.3 3.4 27 11-37 21-47 (198)
492 TIGR02788 VirB11 P-type DNA tr 97.6 4.2E-05 9.2E-10 67.8 3.4 35 11-50 141-175 (308)
493 PRK00625 shikimate kinase; Pro 97.6 4.2E-05 9.2E-10 62.3 3.0 33 16-48 2-34 (173)
494 PRK14021 bifunctional shikimat 97.6 6.1E-05 1.3E-09 71.8 4.2 35 14-48 6-40 (542)
495 PRK08149 ATP synthase SpaL; Va 97.6 0.00012 2.6E-09 67.6 6.0 43 9-56 146-192 (428)
496 PRK01184 hypothetical protein; 97.6 5.6E-05 1.2E-09 61.6 3.3 29 16-45 3-31 (184)
497 PRK02496 adk adenylate kinase; 97.6 4.3E-05 9.4E-10 62.3 2.7 31 16-46 3-33 (184)
498 PLN02796 D-glycerate 3-kinase 97.6 5.2E-05 1.1E-09 68.0 3.3 25 14-38 100-124 (347)
499 PRK00081 coaE dephospho-CoA ki 97.6 6.9E-05 1.5E-09 62.0 3.8 33 15-48 3-35 (194)
500 PHA02530 pseT polynucleotide k 97.6 5.9E-05 1.3E-09 66.1 3.6 33 15-47 3-36 (300)
No 1
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=5.7e-44 Score=312.35 Aligned_cols=183 Identities=27% Similarity=0.448 Sum_probs=160.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHH
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRD 90 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~ 90 (236)
|..+++++|+||||||||.|+..||+. ++++|++||+|||+|+||+|+||+.+|+.+++||+++++++.+.|++.+|..
T Consensus 1 ~~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~ 79 (300)
T PRK14729 1 MKENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYK 79 (300)
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHH
Confidence 345679999999999999999999999 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCC
Q 048453 91 SAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPV 170 (236)
Q Consensus 91 ~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~ 170 (236)
.+...|+++..+++.|+++|||++|+++++.++.. .|.. +.. ++.
T Consensus 80 ~a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~-~p~~--~~~-~r~------------------------------- 124 (300)
T PRK14729 80 EALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPS-TPPV--SSK-IRI------------------------------- 124 (300)
T ss_pred HHHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCC-CCCC--CHH-HHH-------------------------------
Confidence 99999999999999999999999999999988532 2211 111 111
Q ss_pred CcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhcccc
Q 048453 171 GPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKA 229 (236)
Q Consensus 171 ~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~~ 229 (236)
.+...++..+..++|++|+++||++|.+|||||++||+||||++..||+++|+|...+.
T Consensus 125 ~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri~RALEv~~~tG~~~s~~~~~~~ 183 (300)
T PRK14729 125 YVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLEVYYQTGIPISQFLKKQN 183 (300)
T ss_pred HHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHHHHHHHHHHHHhCCChHhhhhccC
Confidence 02334566788999999999999999999999999999999999999999999865443
No 2
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.9e-42 Score=318.02 Aligned_cols=193 Identities=72% Similarity=1.112 Sum_probs=163.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHH
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDS 91 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~ 91 (236)
..+.+++|+||||||||||+..||..+++++|++|++|||+|+||+|++++.+|+.++|||+++++++.+.|++.+|..+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~ 99 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDH 99 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCC
Q 048453 92 AVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVG 171 (236)
Q Consensus 92 ~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (236)
+...|+++..+++.||++|||++|+++|+.++.++......... .... +...+ + .
T Consensus 100 A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~--~~~~---------------~~~~r---~-----~ 154 (468)
T PLN02748 100 AVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDC--TFVV---------------ASVLD---E-----H 154 (468)
T ss_pred HHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCcccccc--cccc---------------CHHHH---H-----H
Confidence 99999999999999999999999999999987654322111000 0000 00000 0 0
Q ss_pred c--chhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhcccc
Q 048453 172 P--DSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKA 229 (236)
Q Consensus 172 ~--~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~~ 229 (236)
+ ...+...+...+|+.|+++||++|++|||||++||+||||||..||+++|+|++.++
T Consensus 155 l~~~~~~~~~g~~~l~~~L~~vDP~~A~rihpnD~rRI~RALEI~~~TG~~~S~~~~~~~ 214 (468)
T PLN02748 155 MDVESGLGNDDEDHGYELLKELDPVAANRIHPNNHRKINRYLELYATTGVLPSKLYQGKA 214 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCCccHHHHHHHHHHHHHHCcCHHHHhhhcc
Confidence 1 134556788999999999999999999999999999999999999999999987654
No 3
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-42 Score=301.01 Aligned_cols=179 Identities=40% Similarity=0.650 Sum_probs=162.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHH
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAV 93 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~ 93 (236)
..+++|+||||||||.|+..||+++++|+|+.||+|||+|+||+|+||+.+|+.+++||+++++++.+.||+.+|..++.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~ 82 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDAL 82 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEechHHHHHHHHhcCCC-CCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCCc
Q 048453 94 PLISEILSRDHIPFIVGGTNYYIQALVSPFL-LDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGP 172 (236)
Q Consensus 94 ~~i~~~~~~~~~~il~GG~~~~irall~~~l-~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (236)
..|+++..+|+.|+++|||++|++++++++- .+.....+..+ +
T Consensus 83 ~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~------------------------------------~ 126 (308)
T COG0324 83 AAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRR------------------------------------L 126 (308)
T ss_pred HHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHH------------------------------------H
Confidence 9999999999999999999999999999854 22222222111 2
Q ss_pred chhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhccc
Q 048453 173 DSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGK 228 (236)
Q Consensus 173 ~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~ 228 (236)
..+++..+..+||+.|+.+||.+|.+|||||++|+.||||++..||+++|++++.+
T Consensus 127 ~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri~RALEv~~~tGk~~s~~~~~~ 182 (308)
T COG0324 127 EAELAELGNDALHAELKKIDPEAAAKIHPNDPQRIIRALEVYYLTGKPISELQKRS 182 (308)
T ss_pred HHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhHHHHHHHHHHHHCCCHHHHhhcc
Confidence 34677889999999999999999999999999999999999999999999987764
No 4
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=2.1e-41 Score=294.68 Aligned_cols=185 Identities=37% Similarity=0.678 Sum_probs=162.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHHHH
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAVPL 95 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~~~ 95 (236)
+++|+||||||||+|+..|+..++++++++|++|||++++|+|++|+++|+.+++||+++++++.+.|++.+|...+...
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCCcchh
Q 048453 96 ISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPDSD 175 (236)
Q Consensus 96 i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (236)
|+++..+++.||++|||++|+++++.++.. .|.. +.. ++. .+...
T Consensus 81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~~-~p~~--~~~-~r~-------------------------------~l~~~ 125 (287)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLSP-TPSA--DKL-IRE-------------------------------QLEIL 125 (287)
T ss_pred HHHHHhCCCCEEEEcCcHHHHHHHHcCCCC-CCCC--CHH-HHH-------------------------------HHHHH
Confidence 999999999999999999999999988532 2211 111 111 13345
Q ss_pred HhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhcccccCCCCC
Q 048453 176 LARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKAAEVGFP 235 (236)
Q Consensus 176 ~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~~~~~~~~ 235 (236)
++..+..++|++|+++||++|++|||||++||.||||++..||+++|+|+..+.....|+
T Consensus 126 ~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RALEi~~~tG~~~s~~~~~~~~~~~~~ 185 (287)
T TIGR00174 126 AEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRALEVFYATGKPPSELFKEQKIELFYD 185 (287)
T ss_pred HHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHHHHHHHHHCCChHHHhhccCCCCCCC
Confidence 667799999999999999999999999999999999999999999999876554443454
No 5
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=3.8e-39 Score=283.69 Aligned_cols=180 Identities=38% Similarity=0.636 Sum_probs=159.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHH
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSA 92 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~ 92 (236)
.+.+++|+||||||||||+..||..++++++++|+.|||++++|+|++|+++|+.+++||+++++++.+.|++.+|...+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCCc
Q 048453 93 VPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGP 172 (236)
Q Consensus 93 ~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (236)
...++++..+++.|+++||+++|+++++.++. +.|..... ++. .+
T Consensus 83 ~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~-~~p~~~~~---~r~-------------------------------~l 127 (307)
T PRK00091 83 LAAIADILARGKLPILVGGTGLYIKALLEGLS-PLPPADPE---LRA-------------------------------EL 127 (307)
T ss_pred HHHHHHHHhCCCCEEEECcHHHHHHHhccCCC-CCCCCCHH---HHH-------------------------------HH
Confidence 99999999999999999999999999998754 22222111 110 02
Q ss_pred chhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhcc
Q 048453 173 DSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQG 227 (236)
Q Consensus 173 ~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~ 227 (236)
.......+..++|+.|+++||++|++|||||++||.||||++..||+++|+|...
T Consensus 128 ~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlEi~~~tG~~~s~~~~~ 182 (307)
T PRK00091 128 EALAAEEGWEALHAELAEIDPEAAARIHPNDPQRIIRALEVYELTGKPLSELQKR 182 (307)
T ss_pred HHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCchhHHHHHHHHHHCCChhhhhhc
Confidence 3345567889999999999999999999999999999999999999999998654
No 6
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.3e-38 Score=288.32 Aligned_cols=179 Identities=33% Similarity=0.557 Sum_probs=155.3
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHH
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFR 89 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~ 89 (236)
...++.+++|+||||||||||+..|+..++.++++.|+.|+|++++|+|++|+.+|+.+++||++++++|.+.|++.+|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCC-CCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCC
Q 048453 90 DSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFL-LDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDE 168 (236)
Q Consensus 90 ~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l-~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~ 168 (236)
.++...|+++..+++.||++|||++|+++++.++- .+.+...++.+
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~--------------------------------- 143 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSE--------------------------------- 143 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHH---------------------------------
Confidence 99999999999999999999999999999998853 22221222111
Q ss_pred CCCcchhHhh----CCHHHHHHHH-HccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhh
Q 048453 169 PVGPDSDLAR----DSSSYSYDLL-KDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLY 225 (236)
Q Consensus 169 ~~~~~~~~~~----~~~~~l~~~L-~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~ 225 (236)
+...++. .+..++|+.| +.+|| +|++|||||++||+|||||+..||+++|+|.
T Consensus 144 ---l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i~pnD~~Ri~RALEV~~~TG~~~S~~~ 201 (421)
T PLN02840 144 ---VWSELVDFQKNGDWDAAVELVVNAGDP-KARSLPRNDWYRLRRSLEIIKSSGSPPSAFS 201 (421)
T ss_pred ---HHHHHHHhccccCHHHHHHHHHhccCc-HHHhcCCCcHHHHHHHHHHHHHHCCCHHHhh
Confidence 1112222 3578889985 55799 9999999999999999999999999999985
No 7
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=99.98 E-value=5e-33 Score=239.25 Aligned_cols=152 Identities=37% Similarity=0.626 Sum_probs=115.1
Q ss_pred CceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCC
Q 048453 48 MQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDD 127 (236)
Q Consensus 48 g~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~ 127 (236)
+|||+|+||+|+||+.+|+.+++||++++++|.+.||+.+|.+++...|.++..+++.||+||||++|+++++.++.. .
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~-~ 79 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLAD-I 79 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS---T
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhh-h
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999988541 1
Q ss_pred CCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHH
Q 048453 128 SAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKI 207 (236)
Q Consensus 128 ~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri 207 (236)
|.. +.. ++. .+...++..+..++|+.|+++||++|++|||||++||
T Consensus 80 p~~--~~~-~r~-------------------------------~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri 125 (253)
T PF01715_consen 80 PEV--DPE-LRA-------------------------------ELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRI 125 (253)
T ss_dssp SSS--HHH-HHH-------------------------------HHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHH
T ss_pred ccc--cHH-HHH-------------------------------HHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHH
Confidence 211 111 111 0344677889999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhhhcccccCCCC
Q 048453 208 NQYLSLYARTGVLPSKLYQGKAAEVGF 234 (236)
Q Consensus 208 ~rale~~~~tg~~~s~~~~~~~~~~~~ 234 (236)
+|||||+..||+++|++++.+.....|
T Consensus 126 ~RALei~~~tG~~~s~~~~~~~~~~~~ 152 (253)
T PF01715_consen 126 IRALEIYELTGKPPSEWQKKQKPPPRY 152 (253)
T ss_dssp HHHHHHHHHHSS-HHHHHHCHHHCBSS
T ss_pred HHHHHHHHhcCCChhHhhhcccccccC
Confidence 999999999999999999874433333
No 8
>PLN02165 adenylate isopentenyltransferase
Probab=99.92 E-value=9.7e-25 Score=192.84 Aligned_cols=113 Identities=55% Similarity=0.900 Sum_probs=107.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCccc-ccChhHHH
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV-EFTAKEFR 89 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~-~~s~~~~~ 89 (236)
..+|++++|+||||||||||+..||+.++.++++.|+.|||+|+||+|++++.+++.+++||+++.+++.. .|++..|.
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999886 89999999
Q ss_pred HHHHHHHHHHhhCCCceEEechHHHHHHHHhcCC
Q 048453 90 DSAVPLISEILSRDHIPFIVGGTNYYIQALVSPF 123 (236)
Q Consensus 90 ~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~ 123 (236)
+.+...+.++..+++.||++|||++|+++++.++
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~ 153 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADR 153 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCC
Confidence 9999999999999999999999999999999875
No 9
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.5e-24 Score=184.06 Aligned_cols=110 Identities=61% Similarity=1.003 Sum_probs=107.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHH
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSA 92 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~ 92 (236)
+-++++|+|+||||||.|+.-||.++++|+|+.|++|||+|.+|.|++++.+++.++|||+++++.+...|++.+|...+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEechHHHHHHHHhcC
Q 048453 93 VPLISEILSRDHIPFIVGGTNYYIQALVSP 122 (236)
Q Consensus 93 ~~~i~~~~~~~~~~il~GG~~~~irall~~ 122 (236)
...|++++.+++.||++||+++|+++++.+
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~ 115 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSK 115 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhHHHHhhc
Confidence 999999999999999999999999999976
No 10
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.76 E-value=1e-19 Score=155.92 Aligned_cols=55 Identities=31% Similarity=0.443 Sum_probs=48.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV 69 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~ 69 (236)
....++|++++|+||||||||||+++|++ +++|.+|+| ++|.+| ...+..++++.
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g-----~l~p~~G~V~l~g~~i--~~~~~kelAk~ 77 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAG-----LLKPKSGEVLLDGKDI--ASLSPKELAKK 77 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhc-----cCCCCCCEEEECCCch--hhcCHHHHhhh
Confidence 44678899999999999999999999999 999999999 799999 56667777765
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.72 E-value=1.8e-17 Score=139.46 Aligned_cols=121 Identities=26% Similarity=0.381 Sum_probs=90.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
....++|++++|+||||||||||+++|++ +..|++|.+ +.|.|+ ...+..++..++...++++.++ ..
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~-----ld~pt~G~v~i~g~d~--~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGG-----LDKPTSGEVLINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCCceEEECCEEc--CcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 44578999999999999999999999999 999999998 899999 5667777776666667776544 34
Q ss_pred cChhHHHHH-----------HHHHHHHHhh--------CCCce-EEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 83 FTAKEFRDS-----------AVPLISEILS--------RDHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 83 ~s~~~~~~~-----------~~~~i~~~~~--------~~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+++.+.... ....+..+.. ..+.| -++||+.|++ ||++.+ ++.|||+.++|.+
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 566655541 1222222221 11334 6899999996 999976 6789999999876
No 12
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=6.7e-18 Score=139.93 Aligned_cols=123 Identities=26% Similarity=0.345 Sum_probs=77.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+....+|++++|+||||||||||+|||.+ +..+|+|+| ++|.++.... ....+++-....+...+.....++-
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~-----LE~~~~G~I~i~g~~~~~~~-~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNG-----LEEPDSGSITVDGEDVGDKK-DILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHC-----CcCCCCceEEECCEeccchh-hHHHHHHhcCeecccccccccchHH
Confidence 55678999999999999999999999999 999999999 7998874332 2222221111111111222233333
Q ss_pred HHHH------------HHHHHHHHHhh-------CCCce-EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 87 EFRD------------SAVPLISEILS-------RDHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 87 ~~~~------------~~~~~i~~~~~-------~~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+.+. +|.+...+++. ...+| -++||+.|++ |||.-+ +++||||++||++.
T Consensus 96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 3221 12222222221 12244 4799999985 888844 78999999998763
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.5e-17 Score=145.26 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=81.7
Q ss_pred ccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccCh
Q 048453 7 KQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTA 85 (236)
Q Consensus 7 ~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~ 85 (236)
.+...+.|++++|+||||||||||+++||| +..+++|.| ++|.++....|.....+.+.+. ...+..+++
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAG-----Le~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~----yALyPhmtV 92 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-----LEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN----YALYPHMTV 92 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECCCCChhHCCEEEEeCC----ccccCCCcH
Confidence 355678999999999999999999999999 999999999 8999996544444444433211 111222333
Q ss_pred hHHHHH-----------HHHHH---HHHh-----hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 86 KEFRDS-----------AVPLI---SEIL-----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 86 ~~~~~~-----------~~~~i---~~~~-----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.+.... ....+ .+++ ...+..-++||+.|++ ||++.+ +++|||++++|.+
T Consensus 93 ~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~ 167 (338)
T COG3839 93 YENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167 (338)
T ss_pred HHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence 222211 11112 2211 1223446899999986 999977 7899999999987
No 14
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.7e-17 Score=141.73 Aligned_cols=44 Identities=25% Similarity=0.482 Sum_probs=39.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+...++|++++|+||||||||||+++|.| ++.|.+|+| +.|.++
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLG-----ll~p~~G~i~~~g~~~ 68 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILG-----LLKPSSGEIKIFGKPV 68 (254)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCcCCcceEEEccccc
Confidence 34578899999999999999999999999 999999999 677765
No 15
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=6.8e-17 Score=144.15 Aligned_cols=119 Identities=22% Similarity=0.279 Sum_probs=78.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+..+++|++++|+||||||||||+++||| +..|++|+| ++|.+|....|.......+. ........+++.
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAG-----fe~p~~G~I~l~G~~i~~lpp~kR~ig~VF----Q~YALFPHltV~ 95 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAG-----FEQPSSGEILLDGEDITDVPPEKRPIGMVF----QSYALFPHMTVE 95 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECCCCChhhcccceee----cCcccCCCCcHH
Confidence 44578999999999999999999999999 999999999 89999954333322222221 111122334444
Q ss_pred HHHHH------------HHHHHHHHh--------hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDS------------AVPLISEIL--------SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~------------~~~~i~~~~--------~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+.... ..+.+.+++ +..+..-++||+.+++ |||+.+ +|+|||.++||.+
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence 43211 112223322 1222334789999886 888865 6789999999876
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.65 E-value=6.2e-17 Score=137.12 Aligned_cols=74 Identities=16% Similarity=0.315 Sum_probs=55.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
....+.|++++++|||||||||++++|.+ ++.|++|.| ++|.+| ...+..++++-..|.+..+....++++.
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINr-----Liept~G~I~i~g~~i--~~~d~~~LRr~IGYviQqigLFPh~Tv~ 93 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINR-----LIEPTSGEILIDGEDI--SDLDPVELRRKIGYVIQQIGLFPHLTVA 93 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhc-----ccCCCCceEEECCeec--ccCCHHHHHHhhhhhhhhcccCCCccHH
Confidence 34578999999999999999999999999 999999999 799999 4555666665444444444444445544
Q ss_pred HH
Q 048453 87 EF 88 (236)
Q Consensus 87 ~~ 88 (236)
+.
T Consensus 94 eN 95 (309)
T COG1125 94 EN 95 (309)
T ss_pred HH
Confidence 43
No 17
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4e-17 Score=134.96 Aligned_cols=168 Identities=21% Similarity=0.218 Sum_probs=109.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChhHH
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEF 88 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~ 88 (236)
...+|++++|+||||+|||||++.|+| -..|++|.+ |+|.++ +..++.++++....+.........|+
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsG-----el~p~~G~v~~~g~~l--~~~~~~~lA~~raVlpQ~s~laFpFt---- 91 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSG-----ELSPDSGEVTLNGVPL--NSWPPEELARHRAVLPQNSSLAFPFT---- 91 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhC-----ccCCCCCeEeeCCcCh--hhCCHHHHHHHhhhcccCcccccceE----
Confidence 356799999999999999999999999 889999999 999999 56667777654322222222222333
Q ss_pred HHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCC
Q 048453 89 RDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDE 168 (236)
Q Consensus 89 ~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~ 168 (236)
+.++..-|..|.-.|...-....+....+.....+++..+....+||||+|- ..
T Consensus 92 -------v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQR------------Vq------- 145 (259)
T COG4559 92 -------VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQR------------VQ------- 145 (259)
T ss_pred -------HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHH------------HH-------
Confidence 3445566888887777644444444444445566777778889999999981 00
Q ss_pred CCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhC
Q 048453 169 PVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTG 218 (236)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg 218 (236)
+..-+++.....--.+..-+|++.++ +|.....-+.|....+-..|
T Consensus 146 ---lARvLaQl~~~v~~~r~L~LDEPtsa-LDi~HQ~~tl~laR~la~~g 191 (259)
T COG4559 146 ---LARVLAQLWPPVPSGRWLFLDEPTSA-LDIAHQHHTLRLARQLAREG 191 (259)
T ss_pred ---HHHHHHHccCCCCCCceEEecCCccc-cchHHHHHHHHHHHHHHhcC
Confidence 11111111111111134467888887 78877777777666554444
No 18
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.5e-16 Score=134.09 Aligned_cols=165 Identities=23% Similarity=0.237 Sum_probs=114.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeecccc--CcccccC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTV--SPNVEFT 84 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v--~~~~~~s 84 (236)
....++|+.++|+|+||||||||++.|++ ++.|++|.| .+|.++.. ..+..++.+. ++++ +|+.++-
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G-----Ll~p~~G~v~~~g~~~~~-~~~~~~~~~~----vG~VfQnpd~q~~ 93 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNG-----LLKPTSGEVLVDGLDTSS-EKSLLELRQK----VGLVFQNPDDQLF 93 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcC-----cCcCCCCEEEECCeeccc-hhhHHHhhcc----eEEEEECcccccc
Confidence 34568899999999999999999999999 999999999 78988742 1223333322 3444 4444443
Q ss_pred hhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhc
Q 048453 85 AKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFF 164 (236)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~ 164 (236)
..... +.+.--..+...+ ...+++.+..++.......+..+....|||||+|
T Consensus 94 ~~tV~----~evafg~~n~g~~------~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkq------------------ 145 (235)
T COG1122 94 GPTVE----DEVAFGLENLGLP------REEIEERVAEALELVGLEELLDRPPFNLSGGQKQ------------------ 145 (235)
T ss_pred cCcHH----HHHhhchhhcCCC------HHHHHHHHHHHHHHcCchhhccCCccccCCccee------------------
Confidence 22211 1222211221121 2224444444444445555566778999999999
Q ss_pred CCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHh-CCCc
Q 048453 165 AGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYART-GVLP 221 (236)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~t-g~~~ 221 (236)
+++.++..++-..+..+||+.|. +||..++.+.+.+..+... |+++
T Consensus 146 ----------RvaIA~vLa~~P~iliLDEPta~-LD~~~~~~l~~~l~~L~~~~~~ti 192 (235)
T COG1122 146 ----------RVAIAGVLAMGPEILLLDEPTAG-LDPKGRRELLELLKKLKEEGGKTI 192 (235)
T ss_pred ----------eHHhhHHHHcCCCEEEEcCCCCC-CCHHHHHHHHHHHHHHHhcCCCeE
Confidence 78888999999999999999999 9999999999999999877 4553
No 19
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=3.6e-16 Score=125.22 Aligned_cols=123 Identities=29% Similarity=0.373 Sum_probs=77.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChh-----hhcCCceeeccccCccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQ-----DQKGVPHHLLGTVSPNV 81 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~-----e~~~~~~~li~~v~~~~ 81 (236)
.....+|+.++|+||||||||||++++|. ++++|+|.+ ++|.++.+.+|..- ...+.|..|-+.+..+-
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNl 97 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNL 97 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHh-----ccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhcc
Confidence 44568899999999999999999999999 999999999 79999977665321 11233334445554333
Q ss_pred ccChh----HH-HHHHHHHHHH-----HhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 82 EFTAK----EF-RDSAVPLISE-----ILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 82 ~~s~~----~~-~~~~~~~i~~-----~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.|... .+ ...+.+.+.. ......+--++||..+++ |.+... +++||+++++|..
T Consensus 98 ifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~ 167 (223)
T COG4619 98 IFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES 167 (223)
T ss_pred ccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChh
Confidence 22210 00 0111122221 122233445788888875 555433 5678888888754
No 20
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.1e-16 Score=129.43 Aligned_cols=121 Identities=17% Similarity=0.311 Sum_probs=88.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
....++|.+++|+||||+|||||+.++++ +++.|+|.| ++|+++ ...+..++++. +.++.....++.
T Consensus 21 sl~i~~g~iTs~IGPNGAGKSTLLS~~sR-----L~~~d~G~i~i~g~~~--~~~~s~~LAk~----lSILkQ~N~i~~- 88 (252)
T COG4604 21 SLDIPKGGITSIIGPNGAGKSTLLSMMSR-----LLKKDSGEITIDGLEL--TSTPSKELAKK----LSILKQENHINS- 88 (252)
T ss_pred eeeecCCceeEEECCCCccHHHHHHHHHH-----hccccCceEEEeeeec--ccCChHHHHHH----HHHHHhhchhhh-
Confidence 34578999999999999999999999999 999999999 899999 45555666543 334433322221
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhccccccccc
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQL 146 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q 146 (236)
+-+++++..-|+.|.--|--.-..+..+++.+.-...+++.++.+.+|||||+|
T Consensus 89 ------rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQ 142 (252)
T COG4604 89 ------RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQ 142 (252)
T ss_pred ------eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhh
Confidence 225667777788887777666666666666554455667777888888888887
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.6e-16 Score=132.34 Aligned_cols=121 Identities=26% Similarity=0.307 Sum_probs=76.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc--eeeccccCcccc--
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP--HHLLGTVSPNVE-- 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~--~~li~~v~~~~~-- 82 (236)
+....+|++++|+||||||||||++.||| +..+++|.| .+|..+. .|.+. +..+. +.++......++
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAG-----L~~p~~G~V~~~g~~v~--~p~~~-~~~vFQ~~~LlPW~Tv~~NV~ 94 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAG-----LEKPTSGEVLLDGRPVT--GPGPD-IGYVFQEDALLPWLTVLDNVA 94 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCcccC--CCCCC-EEEEeccCcccchhhHHhhhe
Confidence 45678999999999999999999999999 999999999 7888882 22221 11111 111111111111
Q ss_pred -------cChhHHHHHHHHHHHHHh---hCCCce-EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 83 -------FTAKEFRDSAVPLISEIL---SRDHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 83 -------~s~~~~~~~~~~~i~~~~---~~~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
.+..+-...+.+.++..- ...+.| -++||+.|++ ||++.+ +++|||.+++|.-+
T Consensus 95 l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT 165 (248)
T COG1116 95 LGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165 (248)
T ss_pred ehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence 111111122333333221 122344 5899999986 999866 77999999998753
No 22
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.59 E-value=6.4e-15 Score=119.42 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=81.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc--eeeccccCcccc--
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP--HHLLGTVSPNVE-- 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~--~~li~~v~~~~~-- 82 (236)
+.+.+.|++++|+||||||||||++.||| +..|.+|.| .+|.|.+...|...-...+. +.++..+...++
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAG-----F~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAG-----FETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHh-----ccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 44678999999999999999999999999 999999999 89999976666544433332 233433332222
Q ss_pred --------cChhHHHHHHHHHHH-----HHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 83 --------FTAKEFRDSAVPLIS-----EILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 83 --------~s~~~~~~~~~~~i~-----~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+++.+-. ....... .... .-..-++||+.+++ |.++++ +++|||.+++|..
T Consensus 94 LGl~P~LkL~a~~r~-~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~ 163 (231)
T COG3840 94 LGLSPGLKLNAEQRE-KVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163 (231)
T ss_pred ccCCcccccCHHHHH-HHHHHHHHhChhhHhh-hCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHH
Confidence 2222211 1111111 1111 22346899999986 888866 7799999999864
No 23
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.9e-15 Score=125.23 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=46.4
Q ss_pred ccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC
Q 048453 7 KQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV 69 (236)
Q Consensus 7 ~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~ 69 (236)
..+..+++++++|+||||||||||++++.+-....-----.|.| |+|.+|...+....++++-
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~ 89 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR 89 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH
Confidence 46778999999999999999999999998832211000123677 9999997766677666643
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=6e-16 Score=134.13 Aligned_cols=42 Identities=29% Similarity=0.508 Sum_probs=38.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL 54 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~ 54 (236)
+..++.|+++++.||||||||||+++||| +..||+|.| ++|.
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG-----Le~p~~G~I~~~~~ 64 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAG-----LETPDAGRIRLNGR 64 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhC-----cCCCCCceEEECCE
Confidence 34567899999999999999999999999 999999999 7888
No 25
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.57 E-value=9.5e-15 Score=123.14 Aligned_cols=121 Identities=24% Similarity=0.308 Sum_probs=77.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhh---cCCceeeccccCccccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQ---KGVPHHLLGTVSPNVEF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~---~~~~~~li~~v~~~~~~ 83 (236)
+....+|++++|+|+||||||||+++|++ +.++++|+| ++|..+...+...... ..++.+-.+.++|. .
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~G-----l~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~--~ 99 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAG-----LEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR--R 99 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhc-----ccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc--h
Confidence 44568899999999999999999999999 999999999 7887774333222111 11112222222221 2
Q ss_pred ChhHHHHHHHH---------HHHHHhh---------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 84 TAKEFRDSAVP---------LISEILS---------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 84 s~~~~~~~~~~---------~i~~~~~---------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++.+...+... .+.+++. .....-++||+.+++ ||++-+ +++||++++||..
T Consensus 100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~s 175 (252)
T COG1124 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175 (252)
T ss_pred hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHH
Confidence 33322222111 1333221 222234899999986 999855 6799999999875
No 26
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=4e-16 Score=127.99 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=106.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCc----ccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSP----NVE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~----~~~ 82 (236)
+....+|+++++.||||+||||.+.++.| ++.+|+|.| +++.||+...+....+.+ ++++++ ...
T Consensus 24 sl~v~~GEiVGLLGPNGAGKTT~Fymi~G-----lv~~d~G~i~ld~~diT~lPm~~RArlG-----igYLpQE~SIFr~ 93 (243)
T COG1137 24 SLEVNSGEIVGLLGPNGAGKTTTFYMIVG-----LVRPDSGKILLDDEDITKLPMHKRARLG-----IGYLPQEASIFRK 93 (243)
T ss_pred eEEEcCCcEEEEECCCCCCceeEEEEEEE-----EEecCCceEEECCcccccCChHHHhhcC-----cccccccchHhhc
Confidence 34568899999999999999999999999 999999999 899999654444444443 344432 344
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
+++.+....+.+... ..... --....+.+|+++ ....+++.+.-..||||||+
T Consensus 94 LtV~dNi~~vlE~~~----~d~~~---~~~~~~l~~LL~e----f~i~hlr~~~a~sLSGGERR---------------- 146 (243)
T COG1137 94 LTVEDNIMAVLEIRE----KDLKK---AERKEELDALLEE----FHITHLRDSKAYSLSGGERR---------------- 146 (243)
T ss_pred CcHHHHHHHHHhhhh----cchhH---HHHHHHHHHHHHH----hchHHHhcCcccccccchHH----------------
Confidence 566655543322221 11110 0011123455544 33455555666788888877
Q ss_pred hcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCC
Q 048453 163 FFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGV 219 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~ 219 (236)
+++.+...+......-+|+++|. +||-....|++.+..++..|.
T Consensus 147 ------------R~EIARaLa~~P~fiLLDEPFAG-VDPiaV~dIq~iI~~L~~rgi 190 (243)
T COG1137 147 ------------RVEIARALAANPKFILLDEPFAG-VDPIAVIDIQRIIKHLKDRGI 190 (243)
T ss_pred ------------HHHHHHHHhcCCCEEEecCCccC-CCchhHHHHHHHHHHHHhCCc
Confidence 55555556666777788888888 888777777777777766553
No 27
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=9.9e-16 Score=129.08 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=112.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+....+|++++|+||||||||||+++|.| ++.||+|.| |+|.||...++....+.++.. -++...+...+++-
T Consensus 24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG-----~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R-TFQ~~rlF~~lTVl 97 (250)
T COG0411 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITG-----FYKPSSGTVIFRGRDITGLPPHRIARLGIAR-TFQITRLFPGLTVL 97 (250)
T ss_pred eEEEcCCeEEEEECCCCCCceeeeeeecc-----cccCCCceEEECCcccCCCCHHHHHhcccee-ecccccccCCCcHH
Confidence 34567899999999999999999999999 999999999 899999655554444444422 23444556667776
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCC
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAG 166 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~ 166 (236)
+....+...-..+......+-. ......+++....++.-....+..++...+||.|+++
T Consensus 98 ENv~va~~~~~~~~~~l~~~~~-~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR-------------------- 156 (250)
T COG0411 98 ENVAVGAHARLGLSGLLGRPRA-RKEEREARERARELLEFVGLGELADRPAGNLSYGQQR-------------------- 156 (250)
T ss_pred HHHHHHhhhhhhhhhhhccccc-hhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH--------------------
Confidence 6553321100000000000000 0001111111112222333444445556788998776
Q ss_pred CCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHh-CCC
Q 048453 167 DEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYART-GVL 220 (236)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~t-g~~ 220 (236)
.++.+...+.-.+|.-+|+++|- +.|....++...+..+... |.+
T Consensus 157 --------~LEIArALa~~P~lLLLDEPaAG-ln~~e~~~l~~~i~~i~~~~g~t 202 (250)
T COG0411 157 --------RLEIARALATQPKLLLLDEPAAG-LNPEETEELAELIRELRDRGGVT 202 (250)
T ss_pred --------HHHHHHHHhcCCCEEEecCccCC-CCHHHHHHHHHHHHHHHhcCCcE
Confidence 66666777788889999999998 8999999998888887763 444
No 28
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.54 E-value=2.8e-15 Score=132.27 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.|++|.| ++|.++.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 58 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTT-----LLRPTSGTARVAGYDVV 58 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEcc
Confidence 34568999999999999999999999999 889999999 8999884
No 29
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.54 E-value=2.7e-15 Score=137.08 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| +.|.++.
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaG-----ll~p~sG~I~l~G~~i~ 68 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAING-----TLTPTAGTVLVAGDDVE 68 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhc-----CCCCCCcEEEECCEEcC
Confidence 34568999999999999999999999999 889999999 8999984
No 30
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.54 E-value=2.6e-15 Score=125.47 Aligned_cols=45 Identities=33% Similarity=0.544 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 65 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINL-----LEEPDSGTIIIDGLKLT 65 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECC
Confidence 34568999999999999999999999999 888999999 8998874
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=3.9e-15 Score=134.25 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| +..+++|.| ++|.++.
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaG-----l~~p~~G~I~~~g~~i~ 69 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAG-----LERITSGEIWIGGRVVN 69 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHC-----CCCCCceEEEECCEECC
Confidence 44578899999999999999999999999 889999999 8999984
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=4.9e-15 Score=125.89 Aligned_cols=44 Identities=32% Similarity=0.554 Sum_probs=40.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~~~ 65 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVG-----LLRPDSGEVLIDGEDIS 65 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEcc
Confidence 4578999999999999999999999999 888999999 8998884
No 33
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=3.6e-15 Score=125.12 Aligned_cols=52 Identities=27% Similarity=0.595 Sum_probs=44.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQK 67 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~ 67 (236)
..+++|++++|+||||||||||+|+|++ ++.+++|.| ++|.++. +....++.
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lng-----l~d~t~G~i~~~g~~i~--~~~~k~lr 77 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNG-----LVDPTSGEILFNGVQIT--KLKGKELR 77 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHhc-----ccCCCcceEEecccchh--ccchHHHH
Confidence 3578999999999999999999999999 999999999 7999984 44444443
No 34
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.53 E-value=3.4e-15 Score=134.54 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=41.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+...++|++++|+||||||||||+++|+| +..+++|+| ++|.++..
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaG-----l~~p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAG-----LERQTAGTIYQGGRDITR 70 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHC-----CCCCCceEEEECCEECCC
Confidence 44567899999999999999999999999 889999999 89999843
No 35
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.53 E-value=3.4e-15 Score=125.26 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILG-----IEKPTRGKIRFNGQDLT 68 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEehh
Confidence 34568999999999999999999999999 888999999 8998884
No 36
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.53 E-value=1e-14 Score=141.14 Aligned_cols=120 Identities=26% Similarity=0.403 Sum_probs=85.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCcee-------eccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHH-------LLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~-------li~~v~~~ 80 (236)
...++|+.++|+|+||||||||++.|.| +..|++|+| ++|.|+ ...+...+++-..+ +.+.+..+
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~g-----ly~p~~G~I~~dg~dl--~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eN 566 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLG-----LYKPQQGRILLDGVDL--NDIDLASLRRQVGYVLQDPFLFSGSIREN 566 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEeH--HhcCHHHHHhheeEEcccchhhcCcHHHH
Confidence 3578999999999999999999999999 999999999 899999 56666666543211 12222111
Q ss_pred -----cccChhHHHHH-----HHHHHHHHhhCCCceE------EechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 -----VEFTAKEFRDS-----AVPLISEILSRDHIPF------IVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 -----~~~s~~~~~~~-----~~~~i~~~~~~~~~~i------l~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
...+..+..+. +.+.|..+......++ ++||+.|++ |+++.+ +++||+++++|..
T Consensus 567 i~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643 (709)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHh
Confidence 11121222222 3455666655555666 789999985 999976 7799999999976
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.52 E-value=5.5e-15 Score=132.55 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=40.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 62 ~~i~~Gei~gLlGpNGaGKSTLl~~L~G-----l~~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 62 FTVASGECFGLLGPNGAGKSTIARMILG-----MTSPDAGKITVLGVPVP 106 (340)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHc-----CCCCCceEEEECCEECC
Confidence 3468899999999999999999999999 889999999 8999984
No 38
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.52 E-value=6.3e-15 Score=123.69 Aligned_cols=44 Identities=36% Similarity=0.514 Sum_probs=40.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~G-----l~~~~~G~i~~~g~~~~ 69 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGG-----LDRPTSGEVRVDGTDIS 69 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhC-----CcCCCceeEEECCEehh
Confidence 4568899999999999999999999999 888999999 8999884
No 39
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.52 E-value=2.9e-15 Score=122.04 Aligned_cols=119 Identities=20% Similarity=0.305 Sum_probs=74.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----ccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEF 83 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~ 83 (236)
-.+++|+++.|+||||||||||++.|.+ ...|++|+| ++|.|+.. ....+....+ .-++++.++ ...
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~-----~e~pt~G~i~~~~~dl~~--l~~~~iP~LR-R~IGvVFQD~rLL~~~ 94 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYG-----EERPTRGKILVNGHDLSR--LKGREIPFLR-RQIGVVFQDFRLLPDR 94 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHh-----hhcCCCceEEECCeeccc--ccccccchhh-heeeeEeeeccccccc
Confidence 3578999999999999999999999999 889999999 89999953 3333322111 123333222 112
Q ss_pred Ch---------------hHHHHHHHHHHHHHhh----CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 84 TA---------------KEFRDSAVPLISEILS----RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 84 s~---------------~~~~~~~~~~i~~~~~----~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++ .++.+.+.+.++..-. +.-.+.++||..|++ ||+++. ++.|||+-++|+.
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 22 2222233323322111 111335778887774 788765 5678888887754
No 40
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.52 E-value=7.5e-15 Score=131.73 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=41.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+...++|++++|+||||||||||+++|++ +++|++|+| ++|.++..
T Consensus 25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~g-----l~~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNL-----LERPTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEECCc
Confidence 34568999999999999999999999999 889999999 89999853
No 41
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.51 E-value=6.2e-15 Score=121.35 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=93.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc-----
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV----- 81 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~----- 81 (236)
.....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++............ .++++..+.
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~~~~~~~~~~~~----~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNG-----LLRPQSGAVLIDGEPLDYSRKGLLERRQ----RVGLVFQDPDDQLF 82 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceeEEECCEEccccccchHHHHh----hEEEEecChhhccc
Confidence 44578999999999999999999999999 888999999 899887311111111111 123332221
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhh
Q 048453 82 EFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYR 161 (236)
Q Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~ 161 (236)
..++.+..... .. ..+.. ..-....+..++..+-+. ....+.+.++|+||+|
T Consensus 83 ~~tv~~nl~~~-----~~-~~~~~---~~~~~~~~~~~l~~~~l~----~~~~~~~~~LS~G~~q--------------- 134 (190)
T TIGR01166 83 AADVDQDVAFG-----PL-NLGLS---EAEVERRVREALTAVGAS----GLRERPTHCLSGGEKK--------------- 134 (190)
T ss_pred cccHHHHHHHH-----HH-HcCCC---HHHHHHHHHHHHHHcCch----hhhhCChhhCCHHHHH---------------
Confidence 12333222110 00 00000 000011233334332221 2223346788999888
Q ss_pred hhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 162 LFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++...-.......+.-+|++.+. +|+..+.++.+.|..+...|.+
T Consensus 135 -------------rv~laral~~~p~llllDEPt~~-LD~~~~~~~~~~l~~~~~~~~t 179 (190)
T TIGR01166 135 -------------RVAIAGAVAMRPDVLLLDEPTAG-LDPAGREQMLAILRRLRAEGMT 179 (190)
T ss_pred -------------HHHHHHHHhcCCCEEEEcCCccc-CCHHHHHHHHHHHHHHHHcCCE
Confidence 33322333344567788999888 8998888888888877655654
No 42
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.51 E-value=9.6e-15 Score=131.91 Aligned_cols=45 Identities=31% Similarity=0.504 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~G-----l~~p~~G~I~i~G~~i~ 58 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNR-----LIEPTAGQIFIDGENIM 58 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34568999999999999999999999999 899999999 8999994
No 43
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.51 E-value=3.6e-15 Score=131.18 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=54.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+...++|++++|+||||||||||+++|++ ++.|++|.| +.|.++... ..+..+-..++.+.......+++.
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~g-----l~~p~~G~i~i~G~~~~~~---~~~~~~~igy~~~~~~~~~~lT~~ 96 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAG-----LLKPTSGEILVLGYDVVKE---PAKVRRRIGYVPQEPSLYPELTVR 96 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhC-----CcCCCceEEEEcCEeCccC---HHHHHhheEEEccCCCCCccccHH
Confidence 44578899999999999999999999999 999999999 899998432 122222222333333345566776
Q ss_pred HHHHH
Q 048453 87 EFRDS 91 (236)
Q Consensus 87 ~~~~~ 91 (236)
++...
T Consensus 97 e~l~~ 101 (293)
T COG1131 97 ENLEF 101 (293)
T ss_pred HHHHH
Confidence 66543
No 44
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.51 E-value=5.5e-15 Score=123.61 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++..
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~i~~ 67 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYK-----EELPTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEEccc
Confidence 34568899999999999999999999999 888999999 89998853
No 45
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.50 E-value=8.7e-15 Score=122.49 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=40.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~G-----l~~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYG-----ALTPSRGQVRIAGEDVN 67 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEEcc
Confidence 34568899999999999999999999999 888999999 7998884
No 46
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.50 E-value=7.7e-15 Score=125.05 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINK-----LEEITSGDLIVDGLKVN 66 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34568899999999999999999999999 889999999 8998884
No 47
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.50 E-value=8.6e-15 Score=129.52 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~G-----l~~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLG-----LTHPDAGSISLCGEPVP 72 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEecc
Confidence 34567899999999999999999999999 889999999 8999984
No 48
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=7.1e-15 Score=124.83 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGG-----LDTPTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEEcC
Confidence 34578899999999999999999999999 888999999 8999884
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=1.3e-14 Score=122.00 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~ 65 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTT-----LLKPTSGRATVAGHDVV 65 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEecC
Confidence 34567899999999999999999999999 889999999 7898874
No 50
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.2e-14 Score=130.86 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| +..+++|.| ++|.++.
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaG-----l~~p~~G~I~~~g~~i~ 71 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAG-----LEKPTEGQIFIDGEDVT 71 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHC-----CCCCCceEEEECCEECC
Confidence 44568899999999999999999999999 899999999 8999984
No 51
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=6e-15 Score=128.10 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=77.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc----c
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV----E 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~----~ 82 (236)
+...++|++++|+|.||+|||||+|+|.+ +-.|++|+| ++|.++. ..+..+++..+. -++++.+.. .
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~-----Le~PtsG~v~v~G~di~--~l~~~~Lr~~R~-~IGMIFQhFnLLss 97 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLLRLINL-----LERPTSGSVFVDGQDLT--ALSEAELRQLRQ-KIGMIFQHFNLLSS 97 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhc-----cCCCCCceEEEcCEecc--cCChHHHHHHHh-hccEEecccccccc
Confidence 44578999999999999999999999999 999999999 8999994 344444432221 122221111 1
Q ss_pred cChhHHH-----------HHHHHHHHHHh-------hCCCce-EEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 83 FTAKEFR-----------DSAVPLISEIL-------SRDHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 83 ~s~~~~~-----------~~~~~~i~~~~-------~~~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.++.+.. ....+.+.+++ ..+.+| -++||+.+++ ||+..+ ++.||++++||++
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~ 175 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChH
Confidence 1111111 11222233322 123344 4789999885 888865 6789999999876
No 52
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.50 E-value=1e-14 Score=122.43 Aligned_cols=45 Identities=24% Similarity=0.444 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ ++++++|.| ++|.++.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 70 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAG-----LLEPDAGFATVDGFDVV 70 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CcCCCCceEEECCEEcc
Confidence 34568899999999999999999999999 889999999 8999884
No 53
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1e-14 Score=124.12 Aligned_cols=45 Identities=31% Similarity=0.528 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 66 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNG-----LVEPTSGSVLIDGTDIN 66 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CcCCCCceEEECCEecc
Confidence 34578999999999999999999999999 888999999 8998884
No 54
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=9.4e-15 Score=122.30 Aligned_cols=45 Identities=27% Similarity=0.483 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~~~ 65 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAG-----LERPDSGEILIDGRDVT 65 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCEEcC
Confidence 44578999999999999999999999999 889999999 8999884
No 55
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.2e-14 Score=129.74 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=42.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc----CCCCce-ecCeecccCCCChhhh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN----ADSMQV-YQGLDVLTNKVSLQDQ 66 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~----~dsg~i-~~g~dI~t~~~~~~e~ 66 (236)
+....+|++++|+|+||||||||+++|++ ++. +++|.| |+|.++. ..+..++
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~G-----ll~~~~~~~~G~i~~~G~~i~--~~~~~~~ 83 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMG-----LIDYPGRVMAEKLEFNGQDLQ--RISEKER 83 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHc-----CCCCCCCCcceEEEECCEECC--cCCHHHH
Confidence 34578999999999999999999999999 554 478999 8999984 3444443
No 56
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.49 E-value=2e-14 Score=122.08 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++++++|.| ++|.++.
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 65 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISG-----FLRPTSGSVLFDGEDIT 65 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcC-----CCCCCCceEEECCEECC
Confidence 45678999999999999999999999999 888999999 8998884
No 57
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.49 E-value=1.5e-14 Score=120.81 Aligned_cols=45 Identities=36% Similarity=0.553 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 66 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNG-----LLGPTSGEVLVDGKDLT 66 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEEcc
Confidence 34578999999999999999999999999 888999999 8998884
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.8e-14 Score=122.14 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 70 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCING-----LERPTSGSVLVDGTDLT 70 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEEcc
Confidence 45678999999999999999999999999 888999999 8999884
No 59
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=8.4e-14 Score=113.14 Aligned_cols=99 Identities=23% Similarity=0.442 Sum_probs=70.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc----c
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV----E 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~----~ 82 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|.++... + .++.. .++++.++. .
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G-----~~~~~~G~i~~~g~~~~~~--~-~~~~~----~i~~~~q~~~~~~~ 87 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILG-----LLKPDSGEIKVLGKDIKKE--P-EEVKR----RIGYLPEEPSLYEN 87 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCEEcccc--h-Hhhhc----cEEEEecCCccccC
Confidence 34568899999999999999999999999 888999999 899887432 1 12211 133333221 1
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.++.+.. . ++||+.+++ ++++.+ +++|||++++|..
T Consensus 88 ~tv~~~~-----------~------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 129 (173)
T cd03230 88 LTVRENL-----------K------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPE 129 (173)
T ss_pred CcHHHHh-----------h------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 2222221 1 899998875 888866 7799999999875
No 60
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=6.3e-14 Score=114.41 Aligned_cols=104 Identities=26% Similarity=0.389 Sum_probs=70.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc----c
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV----E 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~----~ 82 (236)
....++|++++|+||||||||||+++|++ ++.+++|+| ++|.++............ .+.++.... .
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~~~~~~~~~~~~----~i~~~~q~~~~~~~ 90 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAG-----LEEPDSGSILIDGEDLTDLEDELPPLRR----RIGMVFQDFALFPH 90 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEccccchhHHHHhh----cEEEEecCCccCCC
Confidence 34567899999999999999999999999 888999999 899888432110122211 123332221 1
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.++.+.. ... ++||+.+.+ ++++.+ +++|||+.++|..
T Consensus 91 ~t~~~~l-----------~~~----lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~ 134 (178)
T cd03229 91 LTVLENI-----------ALG----LSGGQQQRVALARALAMDPDVLLLDEPTSALDPI 134 (178)
T ss_pred CCHHHhe-----------eec----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 2222211 100 899998875 888866 6799999999875
No 61
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.49 E-value=1.6e-14 Score=130.56 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC--Cce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS--MQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds--g~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| +..+++ |+| ++|.++.
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaG-----l~~p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIAG-----FVKAAGLTGRIAIADRDLT 72 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCCEEEEECCEECC
Confidence 34567899999999999999999999999 889999 999 8999984
No 62
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.49 E-value=9.6e-14 Score=113.71 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=72.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc------
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN------ 80 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~------ 80 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++....+....+.. ++++.++
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~~~~~~~~~~~~-----i~~~~q~~~~~~~ 89 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFG-----LRPPASGEITLDGKPVTRRSPRDAIRAG-----IAYVPEDRKREGL 89 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECCccCHHHHHhCC-----eEEecCCcccCcc
Confidence 44567899999999999999999999999 889999999 899988432211111111 2333222
Q ss_pred -cccChhHHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 -VEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 -~~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
...++.+...... .++||+.+.+ ++++.+ +++|||++++|..
T Consensus 90 ~~~~t~~e~l~~~~-------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 90 VLDLSVAENIALSS-------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred cCCCcHHHHHHHHh-------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 1223333221100 0899998875 888865 6799999999875
No 63
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.49 E-value=7.6e-14 Score=113.42 Aligned_cols=101 Identities=25% Similarity=0.406 Sum_probs=70.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChhH
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKE 87 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~ 87 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++. ..+...+... +.++..+..+-..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G-----~~~~~~G~i~~~g~~~~--~~~~~~~~~~----i~~~~q~~~~~~~- 90 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILG-----LLRPTSGRVRLDGADIS--QWDPNELGDH----VGYLPQDDELFSG- 90 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHh-----ccCCCCCeEEECCEEcc--cCCHHHHHhh----eEEECCCCccccC-
Confidence 4568899999999999999999999999 889999999 8998884 2233222211 3333222111000
Q ss_pred HHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 88 FRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 88 ~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.+.+.+ ++||+.+.+ ++++.+ +++|||+.++|..
T Consensus 91 -------tv~~~l-------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~ 130 (173)
T cd03246 91 -------SIAENI-------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVE 130 (173)
T ss_pred -------cHHHHC-------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHH
Confidence 111111 899998875 888866 6799999999876
No 64
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.49 E-value=1.5e-14 Score=121.72 Aligned_cols=46 Identities=33% Similarity=0.471 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.+
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGG-----LDNPTSGEVLFNGQSLSK 71 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEEhhh
Confidence 34568999999999999999999999999 888999999 89998853
No 65
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.4e-14 Score=126.17 Aligned_cols=44 Identities=27% Similarity=0.423 Sum_probs=40.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 70 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNG-----IYLPQRGRVKVMGREVN 70 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCceEEEECCEECC
Confidence 4568899999999999999999999999 889999999 8999883
No 66
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.48 E-value=1.7e-14 Score=127.35 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLG-----MISPDRGKITVLGEPVP 69 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECc
Confidence 34578999999999999999999999999 889999999 7898874
No 67
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.4e-14 Score=131.28 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaG-----l~~p~~G~I~~~g~~i~ 68 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAG-----LEDITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34567899999999999999999999999 889999999 8999884
No 68
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=2e-14 Score=129.03 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~G-----l~~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINL-----LERPTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34568999999999999999999999999 889999999 8999984
No 69
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=3.6e-14 Score=118.83 Aligned_cols=125 Identities=16% Similarity=0.332 Sum_probs=79.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCcee-----eccccCccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHH-----LLGTVSPNV 81 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~-----li~~v~~~~ 81 (236)
+...++|++++|+|+||+|||||+++|++ ++.+.+|+| |.|.||...++...-+.++.|. .+..+...+
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~G-----l~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeE 97 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMG-----LVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEE 97 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHH
Confidence 55678999999999999999999999999 999999999 8999996544443333433211 111222222
Q ss_pred ccChhHHHHHH-------HHHHHHH----h--hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 82 EFTAKEFRDSA-------VPLISEI----L--SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 82 ~~s~~~~~~~~-------~~~i~~~----~--~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
++-...+.... .+.+.++ . .+.+.-.++||..|-+ |||+.+ +++|||+..+.+.-+
T Consensus 98 NL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv 172 (237)
T COG0410 98 NLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 172 (237)
T ss_pred HHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHH
Confidence 22111111100 1112221 1 1223346899988764 999966 679999999977643
No 70
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.48 E-value=1.3e-14 Score=130.79 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=41.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++..
T Consensus 22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaG-----l~~p~~G~I~i~g~~i~~ 68 (353)
T PRK10851 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAG-----LEHQTSGHIRFHGTDVSR 68 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEECCC
Confidence 34567899999999999999999999999 889999999 89999843
No 71
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.48 E-value=1.6e-14 Score=131.00 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=41.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| +..+++|+| ++|.++.
T Consensus 34 sl~i~~Ge~~~LlGpsGsGKSTLLr~IaG-----l~~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAG-----FETPDSGRIMLDGQDIT 79 (375)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 44567899999999999999999999999 889999999 8999984
No 72
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.48 E-value=3.6e-14 Score=118.18 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 65 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAG-----LIKESSGSILLNGKPIK 65 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEEhh
Confidence 34578999999999999999999999999 889999999 8998873
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.48 E-value=1.3e-13 Score=117.48 Aligned_cols=45 Identities=29% Similarity=0.542 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|.++.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINR-----LVEPSSGSILLEGTDIT 67 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CcCCCccEEEECCEEhh
Confidence 34578899999999999999999999999 888999999 8998884
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2.5e-14 Score=122.14 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 66 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINR-----LIEPTSGEIFIDGEDIR 66 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCeEcC
Confidence 45678999999999999999999999999 888999999 8998874
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.48 E-value=2.6e-14 Score=121.06 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 65 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVG-----LVKPDSGKILLDGQDIT 65 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEecc
Confidence 34567899999999999999999999999 889999999 8898874
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.9e-14 Score=126.10 Aligned_cols=46 Identities=28% Similarity=0.495 Sum_probs=41.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.+
T Consensus 27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNG-----LLKPTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCccEEEECCEECCC
Confidence 34568999999999999999999999999 889999999 89999854
No 77
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=1.3e-14 Score=121.28 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=40.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++++++|+| ++|.++.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 65 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILG-----IILPDSGEVLFDGKPLD 65 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCCchh
Confidence 34568999999999999999999999999 888999999 7888773
No 78
>PRK10908 cell division protein FtsE; Provisional
Probab=99.47 E-value=1.9e-14 Score=121.28 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|.++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~i~ 67 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICG-----IERPSAGKIWFSGHDIT 67 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEcc
Confidence 34568999999999999999999999999 888999999 8898884
No 79
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.47 E-value=1.8e-14 Score=128.69 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=42.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC---CCce-ecCeecccCCCChhhh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD---SMQV-YQGLDVLTNKVSLQDQ 66 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d---sg~i-~~g~dI~t~~~~~~e~ 66 (236)
+....+|++++|+|+||||||||+++|++ ++.++ +|.| |+|.++. ..+..++
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~G-----l~~p~~~~sG~I~~~G~~i~--~~~~~~~ 91 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTAFALMG-----LLAANGRIGGSATFNGREIL--NLPEKEL 91 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHc-----CCCCCCCCCeEEEECCEECC--cCCHHHH
Confidence 44578999999999999999999999999 76665 9999 8999984 3444443
No 80
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=3.5e-14 Score=129.73 Aligned_cols=45 Identities=33% Similarity=0.531 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~G-----l~~p~sG~I~i~G~~i~ 93 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNR-----LIEPTRGQVLIDGVDIA 93 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHc-----CCCCCCCEEEECCEECC
Confidence 34568899999999999999999999999 889999999 8999984
No 81
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=3.3e-14 Score=121.18 Aligned_cols=45 Identities=31% Similarity=0.505 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 67 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAG-----LERPDSGTILFGGEDAT 67 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34568899999999999999999999999 888999999 8998874
No 82
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.46 E-value=3e-14 Score=122.65 Aligned_cols=44 Identities=34% Similarity=0.460 Sum_probs=40.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAG-----ALRPDAGTVDLAGVDLH 66 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcC-----CCCCCCCEEEECCEEcc
Confidence 4567899999999999999999999999 888999999 8998884
No 83
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.46 E-value=2.6e-14 Score=120.23 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 65 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMG-----LLPPRSGSIRFDGRDIT 65 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEEcC
Confidence 34568899999999999999999999999 888999999 8998874
No 84
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.46 E-value=3e-14 Score=120.41 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=41.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++..
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----l~~p~~G~i~~~g~~~~~ 76 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAG-----LDDGSSGEVSLVGQPLHQ 76 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHc-----CCCCCCeeEEECCEEccc
Confidence 45578999999999999999999999999 889999999 89998843
No 85
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.46 E-value=4.9e-14 Score=117.38 Aligned_cols=156 Identities=22% Similarity=0.206 Sum_probs=94.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCc----ccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSP----NVE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~----~~~ 82 (236)
+...++|++++|+||||||||||+++|++ ++++++|+| ++|.++... ....... ++++.. ...
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~p~~G~v~~~g~~~~~~--~~~~~~~-----~~~~~~~~~~~~~ 88 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAG-----LARPDAGEVLWQGEPIRRQ--RDEYHQD-----LLYLGHQPGIKTE 88 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEEcccc--hHHhhhh-----eEEeCCccccCcC
Confidence 45678999999999999999999999999 888999999 889888432 1111111 222221 122
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
+++.+...... .. .+. -....+.++++.+-+. ....+.+.++|+||+|
T Consensus 89 ~tv~e~l~~~~----~~--~~~------~~~~~~~~~l~~~gl~----~~~~~~~~~LS~G~~q---------------- 136 (204)
T PRK13538 89 LTALENLRFYQ----RL--HGP------GDDEALWEALAQVGLA----GFEDVPVRQLSAGQQR---------------- 136 (204)
T ss_pred CcHHHHHHHHH----Hh--cCc------cHHHHHHHHHHHcCCH----HHhhCChhhcCHHHHH----------------
Confidence 34444332211 00 010 1123344555443222 1223346788888887
Q ss_pred hcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 163 FFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.+...........+.-+|++.+. +|+..+..+.+.|..+...|.+
T Consensus 137 ------------rl~la~al~~~p~llllDEPt~~-LD~~~~~~l~~~l~~~~~~~~t 181 (204)
T PRK13538 137 ------------RVALARLWLTRAPLWILDEPFTA-IDKQGVARLEALLAQHAEQGGM 181 (204)
T ss_pred ------------HHHHHHHHhcCCCEEEEeCCCcc-CCHHHHHHHHHHHHHHHHCCCE
Confidence 33322333334566678888877 8888888888888777555554
No 86
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.46 E-value=2.2e-14 Score=128.22 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+|+||||||||+++|++ ++.+++|+| |+|.++.
T Consensus 41 sl~i~~Ge~~~lvG~sGsGKSTLlk~i~G-----l~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARAIIG-----LVKATDGEVAWLGKDLL 86 (331)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHC-----CCCCCCcEEEECCEECC
Confidence 44578999999999999999999999999 888999999 8999984
No 87
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=3.5e-14 Score=126.90 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=39.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+|+||||||||+++|++ ++. +++|+| |+|.++.
T Consensus 27 sl~i~~Ge~~~ivG~sGsGKSTLl~~i~G-----l~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 27 SMTLTEGEIRGLVGESGSGKSLIAKAICG-----VTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHc-----cCCCCCCCcceEEEECCEECC
Confidence 34578999999999999999999999999 554 589999 8999984
No 88
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=1.5e-13 Score=111.51 Aligned_cols=102 Identities=26% Similarity=0.453 Sum_probs=70.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+...++|++++|+||||||||||+++|++ +..+++|+| ++|.++. ..+...+... ++++..+..+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G-----~~~~~~G~i~~~g~~~~--~~~~~~~~~~----i~~~~~~~~~--- 87 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLR-----LYDPTSGEILIDGVDLR--DLDLESLRKN----IAYVPQDPFL--- 87 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHc-----CCCCCCCEEEECCEEhh--hcCHHHHHhh----EEEEcCCchh---
Confidence 45578999999999999999999999999 888999999 7898873 2222222211 2333222111
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
| .. .+.+.+ ++||+.+.+ ++++.+ +++|||+..+|..
T Consensus 88 -~-~~---t~~e~l-------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~ 130 (171)
T cd03228 88 -F-SG---TIRENI-------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130 (171)
T ss_pred -c-cc---hHHHHh-------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 1 00 111111 899998875 888865 6799999999875
No 89
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.46 E-value=3.6e-14 Score=127.97 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=40.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaG-----l~~p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAG-----LTRPDEGEIVLNGRTLF 62 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECc
Confidence 4567899999999999999999999999 889999999 8999884
No 90
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=2.2e-14 Score=130.23 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| +..+++|+| ++|.++.
T Consensus 39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaG-----l~~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAG-----FEQPTAGQIMLDGVDLS 84 (377)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 44568899999999999999999999999 889999999 8999884
No 91
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.46 E-value=4.1e-14 Score=118.02 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=40.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 65 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILG-----LIKPDSGEITFDGKSYQ 65 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CcCCCceEEEECCCccc
Confidence 34567899999999999999999999999 888999999 8888873
No 92
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=3.8e-14 Score=120.94 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=40.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+....+|++++|+||||||||||+++|+| +..+++|+| ++|.++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNL-----LEMPRSGTLNIAGNHF 66 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEec
Confidence 34568999999999999999999999999 888999999 899887
No 93
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.45 E-value=4.3e-14 Score=119.97 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 50 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISG-----LAQPTSGGVILEGKQIT 50 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECC
Confidence 44567899999999999999999999999 889999999 8998884
No 94
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.45 E-value=1e-13 Score=130.89 Aligned_cols=119 Identities=25% Similarity=0.372 Sum_probs=77.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|+| +++|++|+| ++|.|+. +. ..++... ++.+-+.+..+
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g-----~~~p~~G~I~i~g~~i~--~~-~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTG-----LLDPLQGEVTLDGVSVS--SL-QDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEEhh--hH-HHHHHhheEEEccCcccccccHHHH
Confidence 3568999999999999999999999999 999999999 8999994 44 4443322 12222222111
Q ss_pred -----cccChhHHHHHH-----HHHHHHHhhCCCc------eEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 -----VEFTAKEFRDSA-----VPLISEILSRDHI------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 -----~~~s~~~~~~~~-----~~~i~~~~~~~~~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
...+..+..+.+ .+.+..+....+. .-++||+.+++ ||++++ +++||+++++|.+
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~ 504 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAG 504 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 112222222111 1223322211122 23799999986 999977 7799999999976
No 95
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=2.8e-14 Score=124.57 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 72 (279)
T PRK13650 27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDG-----LLEAESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEECC
Confidence 34568999999999999999999999999 889999999 8999984
No 96
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.7e-14 Score=124.98 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=40.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++++++|.| ++|.++.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGR-----HQPPSEGEILLDAQPLE 76 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcC-----CCCCCCCEEEECCEehh
Confidence 34567899999999999999999999999 888999999 8998884
No 97
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=2.8e-14 Score=122.82 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 67 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLLKCFAR-----LLTPQSGTVFLGDKPIS 67 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHhC-----CcCCCCcEEEECCEEhH
Confidence 34568899999999999999999999999 888999999 8998874
No 98
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=4.2e-14 Score=124.01 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=41.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 26 sl~i~~Ge~v~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLLQHLNG-----LLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhc-----CCCCCCcEEEECCEECc
Confidence 44578999999999999999999999999 889999999 8999984
No 99
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.5e-14 Score=120.49 Aligned_cols=45 Identities=31% Similarity=0.514 Sum_probs=39.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++. +++|+| ++|.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNR-----LIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCCCCCCceEEEECCEECC
Confidence 34568999999999999999999999999 665 479999 8999884
No 100
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.45 E-value=1.4e-13 Score=114.20 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=77.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcc-cccChhHHHHHHH
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPN-VEFTAKEFRDSAV 93 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~-~~~s~~~~~~~~~ 93 (236)
++++|+||||+|||.++..+|+.+++++++.|+.|+|.++++++++|.+.++.++++.+++..... ..+++.++.+.+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li 81 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI 81 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999998877766443 3478788777777
Q ss_pred HHHHHHhhCCCceEEechHHHHHHHHhcC
Q 048453 94 PLISEILSRDHIPFIVGGTNYYIQALVSP 122 (236)
Q Consensus 94 ~~i~~~~~~~~~~il~GG~~~~irall~~ 122 (236)
..+..+.. .+..|+.||+--.++++...
T Consensus 82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~~ 109 (233)
T PF01745_consen 82 SEVNSYSA-HGGLILEGGSISLLNCMAQD 109 (233)
T ss_dssp HHHHTTTT-SSEEEEEE--HHHHHHHHH-
T ss_pred HHHHhccc-cCceEEeCchHHHHHHHHhc
Confidence 77777766 67889999999988888865
No 101
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.45 E-value=4.5e-14 Score=120.11 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTR-----LYVAQEGQISVAGHDLR 66 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CcCCCceEEEECCEEcc
Confidence 34568999999999999999999999999 889999999 8998884
No 102
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.45 E-value=2.1e-13 Score=125.07 Aligned_cols=120 Identities=26% Similarity=0.276 Sum_probs=83.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccc---cC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVE---FT 84 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~---~s 84 (236)
.+..+|+.++|+||||||||||+|.|.| +..|.+|.| ++|.|+ .+.+++++.+...|+..-+...+. -+
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG-----~w~p~~G~VRLDga~l--~qWd~e~lG~hiGYLPQdVeLF~GTIaeN 429 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVG-----IWPPTSGSVRLDGADL--RQWDREQLGRHIGYLPQDVELFDGTIAEN 429 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHc-----ccccCCCcEEecchhh--hcCCHHHhccccCcCcccceecCCcHHHH
Confidence 3568899999999999999999999999 999999999 899999 678888887654333332221110 01
Q ss_pred hhHHH---------H-----HHHHHHHHHhhCCCceE------EechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 85 AKEFR---------D-----SAVPLISEILSRDHIPF------IVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 85 ~~~~~---------~-----~~~~~i~~~~~~~~~~i------l~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
...|. + .+++.|-.+....+++| ++||+.|++ ||+.-+ +++|||.+++|..
T Consensus 430 IaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 430 IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 11111 1 12333433333334443 789999997 888855 5689999999865
No 103
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=4.2e-14 Score=122.84 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 66 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSG-----LLRPQKGAVLWQGKPLD 66 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcC-----CCCCCccEEEECCEEcc
Confidence 34568899999999999999999999999 889999999 8999883
No 104
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.45 E-value=4.6e-14 Score=120.92 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=40.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 68 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINL-----LEQPEAGTIRVGDITID 68 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCeEEEECCEEcc
Confidence 34567899999999999999999999999 888999999 7898874
No 105
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.45 E-value=4.6e-13 Score=114.19 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| .+.+++|.| ++|.++.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITG-----KTRPDEGSVLFGGTDLT 67 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCCeEEECCeecC
Confidence 34578999999999999999999999999 888999999 8998874
No 106
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.45 E-value=4.3e-14 Score=118.78 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 67 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTG-----ELRPTSGTAYINGYSIR 67 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEecc
Confidence 34578999999999999999999999999 888999999 8998874
No 107
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4.4e-14 Score=118.87 Aligned_cols=45 Identities=29% Similarity=0.430 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 69 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAG-----LERPTSGEVLVDGEPVT 69 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECc
Confidence 34568899999999999999999999999 888999999 8898873
No 108
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.44 E-value=3.6e-14 Score=122.46 Aligned_cols=160 Identities=18% Similarity=0.181 Sum_probs=95.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++. ..+...+... ++++..+ ..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~p~~G~i~~~g~~~~--~~~~~~~~~~----i~~~~q~~~~~~~ 90 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSG-----ELSPDSGEVRLNGRPLA--DWSPAELARR----RAVLPQHSSLSFP 90 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCEEEECCEEcc--cCCHHHhhhh----eEEEccCCcCCCC
Confidence 34568899999999999999999999999 888999999 8898873 2222222211 2333222 12
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
.++.++..... ...+.. .......+..++..+-+ .....+.+.++|+||+|
T Consensus 91 ~tv~e~l~~~~------~~~~~~---~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGe~q---------------- 141 (258)
T PRK13548 91 FTVEEVVAMGR------APHGLS---RAEDDALVAAALAQVDL----AHLAGRDYPQLSGGEQQ---------------- 141 (258)
T ss_pred CCHHHHHHhhh------cccCCC---cHHHHHHHHHHHHHcCC----HhHhcCCcccCCHHHHH----------------
Confidence 34433321110 000000 00112233444433222 12223347899999998
Q ss_pred hcCCCCCCCcchhHhhCCHHH------HHHHHHccChhHhhccCCCchHHHHHHHHHHH-HhCCC
Q 048453 163 FFAGDEPVGPDSDLARDSSSY------SYDLLKDLDPVAANRIHPNNYRKINQYLSLYA-RTGVL 220 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~------l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~-~tg~~ 220 (236)
++....... ....+.-+|++.+. +|+..+..+...|.-+. ..|.+
T Consensus 142 ------------rv~la~al~~~~~~~~~p~lllLDEPt~~-LD~~~~~~l~~~l~~~~~~~~~t 193 (258)
T PRK13548 142 ------------RVQLARVLAQLWEPDGPPRWLLLDEPTSA-LDLAHQHHVLRLARQLAHERGLA 193 (258)
T ss_pred ------------HHHHHHHHhcccccCCCCCEEEEeCCccc-CCHHHHHHHHHHHHHHHHhcCCE
Confidence 222222122 13467788999988 99999999999988776 55654
No 109
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.44 E-value=9.3e-14 Score=118.36 Aligned_cols=45 Identities=36% Similarity=0.586 Sum_probs=39.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE--EcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI--INADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i--i~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ + ..+++|.| ++|.++.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAG-----HPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCcceEEECCEecC
Confidence 44578999999999999999999999999 5 36899999 8998874
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=3.5e-13 Score=112.59 Aligned_cols=43 Identities=33% Similarity=0.495 Sum_probs=38.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++| +++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 64 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILAT-----LTPPSSGTIRIDGQDVL 64 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhC-----CCCCCccEEEECCCccc
Confidence 345678 999999999999999999999 889999999 8888874
No 111
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.44 E-value=5.6e-14 Score=130.01 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=111.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+....+|++++|+|.||+|||||++.|+| ++.||+|+| ++|..+.-..|...+..++. ...+.+....++++.
T Consensus 28 ~l~v~~GEV~aL~GeNGAGKSTLmKiLsG-----v~~p~~G~I~~~G~~~~~~sp~~A~~~GI~-~V~QEl~L~p~LsVa 101 (500)
T COG1129 28 SLTVRPGEVHALLGENGAGKSTLMKILSG-----VYPPDSGEILIDGKPVAFSSPRDALAAGIA-TVHQELSLVPNLSVA 101 (500)
T ss_pred eeEEeCceEEEEecCCCCCHHHHHHHHhC-----cccCCCceEEECCEEccCCCHHHHHhCCcE-EEeechhccCCccHH
Confidence 45678999999999999999999999999 999999999 89999855555555555541 111112222344544
Q ss_pred HHHHHHHHHHHHHhhCCCceEE------echHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhh
Q 048453 87 EFRDSAVPLISEILSRDHIPFI------VGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLY 160 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il------~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~ 160 (236)
+.. . -++.|.- .-.+....++++..+..+.. .+ ..+.+||.+|||
T Consensus 102 eNi----------f-Lgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~---~~-~~v~~LsiaqrQ-------------- 152 (500)
T COG1129 102 ENI----------F-LGREPTRRFGLIDRKAMRRRARELLARLGLDID---PD-TLVGDLSIAQRQ-------------- 152 (500)
T ss_pred HHh----------h-cccccccCCCccCHHHHHHHHHHHHHHcCCCCC---hh-hhhhhCCHHHHH--------------
Confidence 332 1 1222221 12234445777766544311 32 238899999999
Q ss_pred hhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 161 RLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
.++.+.......+|.-+|+++|+ +..+...++.+.+..++..|..+
T Consensus 153 --------------~VeIArAl~~~arllIlDEPTaa-Lt~~E~~~Lf~~ir~Lk~~Gv~i 198 (500)
T COG1129 153 --------------MVEIARALSFDARVLILDEPTAA-LTVKETERLFDLIRRLKAQGVAI 198 (500)
T ss_pred --------------HHHHHHHHhcCCCEEEEcCCccc-CCHHHHHHHHHHHHHHHhCCCEE
Confidence 44444444555668899999999 99999999999999999988753
No 112
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.44 E-value=4.7e-14 Score=121.53 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~ 70 (257)
T PRK10619 25 SLQANAGDVISIIGSSGSGKSTFLRCINF-----LEKPSEGSIVVNGQTIN 70 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCEEcc
Confidence 34568999999999999999999999999 888999999 8998873
No 113
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.44 E-value=2.8e-14 Score=118.69 Aligned_cols=44 Identities=32% Similarity=0.396 Sum_probs=39.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 63 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGL-----LEKFDSGQVYLNGKETP 63 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhc-----CCCCCCeEEEECCEEcc
Confidence 4567899999999999999999999999 888999999 8998863
No 114
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.44 E-value=4.3e-14 Score=124.74 Aligned_cols=44 Identities=34% Similarity=0.421 Sum_probs=40.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~G-----l~~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVL 67 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEcc
Confidence 4568899999999999999999999999 889999999 8999884
No 115
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.44 E-value=6.5e-14 Score=121.57 Aligned_cols=45 Identities=24% Similarity=0.481 Sum_probs=40.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 72 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGG-----QIAPDHGEILFDGENIP 72 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEEcc
Confidence 34568899999999999999999999999 888999999 8998874
No 116
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=3.1e-14 Score=127.07 Aligned_cols=45 Identities=33% Similarity=0.499 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+|+||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~g-----l~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLTM-----IETPTGGELYYQGQDLL 80 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHc-----CCCCCCcEEEECCEEcC
Confidence 44578999999999999999999999999 778899999 8999984
No 117
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.44 E-value=7e-14 Score=122.30 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=54.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN 80 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~ 80 (236)
+...++|++++|+|.|||||||++++|.+.++..--...+|.| |+|.++ .+.+.+++..++..-++++.++
T Consensus 25 s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l--~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 25 SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDL--LSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccc--ccCCHHHHHhhcCceEEEEEcC
Confidence 3456889999999999999999999999966521111256777 999998 6677777777777777777544
No 118
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=5.6e-14 Score=119.80 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 68 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVG-----IVPRDAGNIIIDDEDIS 68 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEECC
Confidence 34568999999999999999999999999 888999999 7998884
No 119
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=6e-14 Score=126.42 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=40.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaG-----l~~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISG-----LTRPQKGRIVLNGRVLF 63 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEcc
Confidence 34567899999999999999999999999 889999999 8998874
No 120
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.44 E-value=9.1e-14 Score=115.17 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=94.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++... ....... ++++... ..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~~~--~~~~~~~-----i~~~~q~~~~~~~ 87 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAG-----LLRPDSGEVRWNGTALAEQ--RDEPHRN-----ILYLGHLPGLKPE 87 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCccEEEECCEEcccc--hHHhhhh-----eEEeccCcccccC
Confidence 44578899999999999999999999999 888999999 889887432 2111111 2222211 12
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
.++.+..... .... . .....+..++..+-++ ....+.+.++|+||+|
T Consensus 88 ~tv~~~l~~~----~~~~--~-------~~~~~~~~~l~~~~l~----~~~~~~~~~LS~G~~q---------------- 134 (198)
T TIGR01189 88 LSALENLHFW----AAIH--G-------GAQRTIEDALAAVGLT----GFEDLPAAQLSAGQQR---------------- 134 (198)
T ss_pred CcHHHHHHHH----HHHc--C-------CcHHHHHHHHHHcCCH----HHhcCChhhcCHHHHH----------------
Confidence 3433332211 0110 0 0112334444332221 1123346789999888
Q ss_pred hcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 163 FFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.+...........+.-+|++.+. +|+..+..+.+.|..+...|.+
T Consensus 135 ------------rv~la~al~~~p~llllDEPt~~-LD~~~~~~l~~~l~~~~~~~~t 179 (198)
T TIGR01189 135 ------------RLALARLWLSRAPLWILDEPTTA-LDKAGVALLAGLLRAHLARGGI 179 (198)
T ss_pred ------------HHHHHHHHhcCCCEEEEeCCCcC-CCHHHHHHHHHHHHHHHhCCCE
Confidence 33333333345667788999888 8999999999888877666654
No 121
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.44 E-value=4.3e-14 Score=118.18 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~v~~~g~~~~ 65 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAG-----LEEPTSGRIYIGGRDVT 65 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34568999999999999999999999999 888999999 8999884
No 122
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=4.2e-14 Score=123.14 Aligned_cols=44 Identities=32% Similarity=0.505 Sum_probs=40.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLALHLNG-----LLRPQKGKVLVSGIDTG 67 (274)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEECC
Confidence 3568899999999999999999999999 888999999 8999884
No 123
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=3.7e-13 Score=112.07 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=75.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc---CCCCce-ecCeecccCCCChhhhcCCceeeccccCccccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN---ADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~---~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~ 83 (236)
+...++|++++|+||||||||||+++|++ ++. +++|+| ++|.++... ....+..+ .+..........+
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~~~~G~i~i~g~~~~~~--~~~~~~~i-~~~~q~~~~~~~~ 98 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALAN-----RTEGNVSVEGDIHYNGIPYKEF--AEKYPGEI-IYVSEEDVHFPTL 98 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcc-----cCCCCCCcceEEEECCEECccc--hhhhcceE-EEEecccccCCCC
Confidence 34578999999999999999999999999 777 899999 899988432 11111111 1111111112234
Q ss_pred ChhHHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 84 TAKEFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++.++...... .......--++||+.+.+ ++++.+ +++|||++++|..
T Consensus 99 tv~~~l~~~~~----~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~ 152 (202)
T cd03233 99 TVRETLDFALR----CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152 (202)
T ss_pred cHHHHHhhhhh----hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHH
Confidence 55555433211 112223345799998875 888866 6799999999875
No 124
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=7.6e-14 Score=121.21 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~G-----l~~p~~G~i~i~g~~~~ 89 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINR-----LIEPTSGKVLIDGQDIA 89 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCeEEEECCEEcc
Confidence 34568899999999999999999999999 888999999 8998874
No 125
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=5.5e-14 Score=122.44 Aligned_cols=45 Identities=29% Similarity=0.500 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|.++.
T Consensus 22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----l~~~~~G~i~~~g~~~~ 67 (275)
T PRK13639 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNG-----ILKPTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCccEEEECCEECc
Confidence 34578999999999999999999999999 888999999 8999883
No 126
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=3.9e-14 Score=124.09 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~G-----l~~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINA-----LLKPTTGTVTVDDITIT 72 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEECc
Confidence 34568899999999999999999999999 889999999 8999984
No 127
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.43 E-value=2.5e-13 Score=129.78 Aligned_cols=120 Identities=18% Similarity=0.353 Sum_probs=79.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|++ ++ |++|+| ++|.|+ ...+.+++++. ++.+-+++..+
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g-----~~-p~~G~I~i~g~~i--~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLG-----FL-PYQGSLKINGIEL--RELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CC-CCCcEEEECCEec--ccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 3468999999999999999999999999 78 889999 899999 45555554432 12222222111
Q ss_pred -----cccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 -----VEFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 -----~~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
..++..+....+ .+.+..+....... -++||+.|++ ||++.+ +++||+++++|..+
T Consensus 443 I~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 443 VLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred hhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 123333332221 22333332222222 3799999986 999977 77999999999864
No 128
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=5.7e-14 Score=122.89 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|.++.
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~G-----l~~p~~G~i~i~g~~~~ 71 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNG-----ILKPSSGRILFDGKPID 71 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCccEEEECCEECC
Confidence 34568899999999999999999999999 889999999 8999884
No 129
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=5.2e-14 Score=122.92 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=41.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.+
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G-----~~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNG-----LLLPEAGTITVGGMVLSE 73 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCCcEEEECCEECCc
Confidence 34568999999999999999999999999 888999999 89999843
No 130
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=5.3e-14 Score=124.42 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=39.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++
T Consensus 27 sl~i~~Ge~v~iiG~nGsGKSTLl~~L~G-----l~~p~~G~i~~~g~~~ 71 (305)
T PRK13651 27 SVEINQGEFIAIIGQTGSGKTTFIEHLNA-----LLLPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCCcEEEEeceec
Confidence 44678999999999999999999999999 889999999 777665
No 131
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.5e-13 Score=130.46 Aligned_cols=115 Identities=23% Similarity=0.398 Sum_probs=80.6
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc--------
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN-------- 80 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~-------- 80 (236)
..++|++++|+||||+||||++..|-+ ++.|++|+| .+|.||. ..+...+. ..++.+.+.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~r-----fY~PtsG~IllDG~~i~--~~~~~~lr----~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLR-----FYDPTSGRILLDGVPIS--DINHKYLR----RKIGLVGQEPVLFSGSI 558 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHH-----hcCCCCCeEEECCeehh--hcCHHHHH----HHeeeeeccceeecccH
Confidence 468899999999999999999999999 999999999 8999993 44444333 224444221
Q ss_pred --------cccChhHHHH-----HHHHHHHHHhhCCCc------eEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 --------VEFTAKEFRD-----SAVPLISEILSRDHI------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 --------~~~s~~~~~~-----~~~~~i~~~~~~~~~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+..+..+... .+++.|.+......+ -.++||+.|++ |||+++ +++||.|++||.+
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDae 638 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAE 638 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchh
Confidence 1112222221 234455554333222 25799999996 999977 7899999999976
No 132
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=1.8e-13 Score=119.27 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=88.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccc----
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVE---- 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~---- 82 (236)
...++.|++++|+|-||||||||+|+|.+ ++.|++|+| ++|.|| .+.+..++..++.+-+.++.+...
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-----Liept~G~ilv~g~di--~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNR-----LIEPTRGEILVDGKDI--AKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhc-----cCCCCCceEEECCcch--hcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 34578999999999999999999999999 999999999 899999 778888887776665555532211
Q ss_pred cC---------------hhHHHHHHHHHHHHH----hhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 83 FT---------------AKEFRDSAVPLISEI----LSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 83 ~s---------------~~~~~~~~~~~i~~~----~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.+ ..+-.+.+.+.++.. ++....--++||+.|++ ||+..+ +++||+.++||+-
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence 11 122223344444332 22222335899999986 999966 7899999999864
No 133
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.43 E-value=2.1e-13 Score=109.88 Aligned_cols=90 Identities=19% Similarity=0.340 Sum_probs=66.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++....+. ..... .++++..
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----~~~~~~G~v~~~g~~~~~~~~~-~~~~~----~i~~~~q------- 82 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSG-----LYKPDSGEILVDGKEVSFASPR-DARRA----GIAMVYQ------- 82 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCEECCcCCHH-HHHhc----CeEEEEe-------
Confidence 34578999999999999999999999999 889999999 788887422111 11111 1122211
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++||+.+.+ ++++.+ +++|||++++|..
T Consensus 83 ---------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 83 ---------------------LSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred ---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 889988875 888866 6789999999875
No 134
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.43 E-value=2.9e-13 Score=131.57 Aligned_cols=122 Identities=26% Similarity=0.388 Sum_probs=79.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~ 79 (236)
....++|+.++|+|+||||||||++.|+| ++.|++|+| ++|.++ ...+..+++... +.+-+++..
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~g-----l~~p~~G~I~idg~~i--~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLG-----FETPESGSVFYDGQDL--AGLDVQAVRRQLGVVLQNGRLMSGSIFE 545 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCEEEECCEEc--CcCCHHHHHhccEEEccCCccCcccHHH
Confidence 34578999999999999999999999999 999999999 899999 455555544321 122222211
Q ss_pred cc----ccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 NV----EFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~~----~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+- +.+..+..+.+ .+.+..+......+ -++||+.+++ ||++.+ +++||+++++|..+
T Consensus 546 Ni~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 546 NIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred HHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 11 12222222211 12232222221222 3799999986 999977 77999999999763
No 135
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=7.6e-14 Score=122.51 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNG-----LLQPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCCcEEEECCEECc
Confidence 34578999999999999999999999999 889999999 8999884
No 136
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.1e-13 Score=118.28 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 68 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINR-----LIDPTEGSILIDGVDIK 68 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEEhh
Confidence 44567899999999999999999999999 888999999 8999884
No 137
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.43 E-value=2e-13 Score=130.60 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=79.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCce-------eeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPH-------HLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~-------~li~~v~~ 79 (236)
....++|+.++|+|+||||||||++.|+| ++.|++|+| ++|.++ .+.+...+..... .+-+++..
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g-----l~~p~~G~I~idg~~i--~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGEIRLDGRPL--SSLSHSVLRQGVAMVQQDPVVLADTFLA 433 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCCceEEECCEEh--hhCCHHHHHhheEEEccCCccccchHHH
Confidence 34578999999999999999999999999 999999999 899999 4555554433211 11122211
Q ss_pred c----cccChhHHHHH-----HHHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 N----VEFTAKEFRDS-----AVPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~----~~~s~~~~~~~-----~~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+ ..++..+..+. +.+.+..+....... -++||+.+++ ||++.+ +++|||++++|..+
T Consensus 434 NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 434 NVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred HHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 1 11111111111 122233322211222 3789999986 999976 67999999999874
No 138
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.42 E-value=2.6e-13 Score=114.32 Aligned_cols=121 Identities=21% Similarity=0.369 Sum_probs=79.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCce---e------ecccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPH---H------LLGTV 77 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~---~------li~~v 77 (236)
+...++|++++|+||||||||||++.|.+ ++.|++|.| ++|.+| .+.+..++..+.. . +++.+
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~G-----ll~P~~GeI~i~G~~i--~~ls~~~~~~ir~r~GvlFQ~gALFssl 100 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILG-----LLRPDKGEILIDGEDI--PQLSEEELYEIRKRMGVLFQQGALFSSL 100 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhc-----cCCCCCCeEEEcCcch--hccCHHHHHHHHhheeEEeecccccccc
Confidence 45678999999999999999999999999 999999999 899999 5666665543321 1 22333
Q ss_pred Ccccc--cChhHHHHHHHHHHHHH-----h---h----CCCce-EEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 78 SPNVE--FTAKEFRDSAVPLISEI-----L---S----RDHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 78 ~~~~~--~s~~~~~~~~~~~i~~~-----~---~----~~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
...++ |...++.+.-...++++ . . ....| -++||+..++ ||+.-+ +++|||++.+|.-
T Consensus 101 tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI 179 (263)
T COG1127 101 TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179 (263)
T ss_pred chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcc
Confidence 22222 21112211111122221 1 1 11233 5899998875 999855 6789999999874
No 139
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=7.8e-13 Score=113.60 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 70 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTG-----FYKPTGGTILLRGQHIE 70 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhC-----CcCCCcceEEECCEECC
Confidence 34567899999999999999999999999 889999999 8998884
No 140
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.2e-13 Score=113.99 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=55.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc--cccC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN--VEFT 84 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~--~~~s 84 (236)
....+.|++.+|+||||||||||+.+|+|.-+.+ .++|+| |+|.||....+....+.++ ++.+..|. ...+
T Consensus 24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~---Vt~G~I~~~GedI~~l~~~ERAr~Gi---fLafQ~P~ei~GV~ 97 (251)
T COG0396 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE---VTEGEILFDGEDILELSPDERARAGI---FLAFQYPVEIPGVT 97 (251)
T ss_pred ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce---EecceEEECCcccccCCHhHHHhcCC---EEeecCCccCCCee
Confidence 4567899999999999999999999999954444 478888 9999996555444444443 45555443 3455
Q ss_pred hhHHHHH
Q 048453 85 AKEFRDS 91 (236)
Q Consensus 85 ~~~~~~~ 91 (236)
..+|.+.
T Consensus 98 ~~~fLr~ 104 (251)
T COG0396 98 NSDFLRA 104 (251)
T ss_pred HHHHHHH
Confidence 5666554
No 141
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.42 E-value=1.3e-13 Score=116.36 Aligned_cols=46 Identities=28% Similarity=0.501 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
....++|++++|+||||||||||+++|++ ++.+++|+| ++|.++..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILG-----LLKPTSGSIIFDGKDLLK 71 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEEccc
Confidence 44578999999999999999999999999 888999999 89998843
No 142
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=5.8e-14 Score=117.34 Aligned_cols=45 Identities=33% Similarity=0.497 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~g-----l~~~~~G~i~~~g~~~~ 63 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAG-----FETPQSGRVLINGVDVT 63 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEEcC
Confidence 34568999999999999999999999999 888999999 7998884
No 143
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.42 E-value=6.1e-13 Score=112.36 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE-----cCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII-----NADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii-----~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++ .+++|+| ++|.++.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNR-----LNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----hcccccCCCCCeEEEECCEEhh
Confidence 34567899999999999999999999999 77 8999999 8999884
No 144
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=8.3e-14 Score=121.03 Aligned_cols=45 Identities=27% Similarity=0.486 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~I~~~g~~i~ 74 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTG-----LLKPQSGEIKIDGITIS 74 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEecC
Confidence 34578999999999999999999999999 888999999 8999884
No 145
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.42 E-value=1.8e-13 Score=113.58 Aligned_cols=158 Identities=18% Similarity=0.086 Sum_probs=91.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+....+|++++|+||||||||||+++|++ +..+++|+| ++|.++.. .....+.++ .++..........++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----~~~~~~G~v~~~g~~~~~--~~~~~~~~i-~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAG-----LLNPEKGEILFERQSIKK--DLCTYQKQL-CFVGHRSGINPYLTLR 92 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCeeEEECCCcccc--CHHHHHhhe-EEeccccccCcCCCHH
Confidence 34568999999999999999999999999 889999999 78888742 111111111 1111111111234444
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCC
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAG 166 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~ 166 (236)
+...... .... ....+..++..+-+. ....+.+..+|+||+|
T Consensus 93 ~~~~~~~-------~~~~-------~~~~~~~~l~~~~l~----~~~~~~~~~LS~G~~~-------------------- 134 (200)
T PRK13540 93 ENCLYDI-------HFSP-------GAVGITELCRLFSLE----HLIDYPCGLLSSGQKR-------------------- 134 (200)
T ss_pred HHHHHHH-------hcCc-------chHHHHHHHHHcCCc----hhhhCChhhcCHHHHH--------------------
Confidence 4332110 0000 012344444432221 1223346778888877
Q ss_pred CCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 167 DEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.+...........+.-+|++.+. +|+..+..+.+.|..+...|.+
T Consensus 135 --------rv~laral~~~p~~lilDEP~~~-LD~~~~~~l~~~l~~~~~~~~t 179 (200)
T PRK13540 135 --------QVALLRLWMSKAKLWLLDEPLVA-LDELSLLTIITKIQEHRAKGGA 179 (200)
T ss_pred --------HHHHHHHHhcCCCEEEEeCCCcc-cCHHHHHHHHHHHHHHHHcCCE
Confidence 33333333445566777888877 8888888888888776555544
No 146
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=8.5e-14 Score=122.00 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 27 sl~i~~Ge~~~iiG~NGaGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 27 SFELEEGSFVALVGHTGSGKSTLMQHFNA-----LLKPSSGTITIAGYHIT 72 (287)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEECc
Confidence 34578999999999999999999999999 889999999 8999884
No 147
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.42 E-value=9.9e-13 Score=112.89 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=38.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++. +++|+| ++|.++.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLNR-----MNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHHh-----hcccCCCCCCceEEEECCEEcc
Confidence 34578899999999999999999999999 542 589999 8998884
No 148
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=1.1e-13 Score=119.43 Aligned_cols=45 Identities=24% Similarity=0.453 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 66 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAG-----FVPYQHGSITLDGKPVE 66 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEECC
Confidence 34578899999999999999999999999 888999999 8998874
No 149
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.41 E-value=1.1e-13 Score=120.03 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGELLIDDHPLH 78 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhC-----CCCCCCCEEEECCEECC
Confidence 45678999999999999999999999999 889999999 8998884
No 150
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.1e-13 Score=120.58 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+|+||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 27 ~l~i~~Ge~~~I~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~i~ 72 (277)
T PRK13642 27 SFSITKGEWVSIIGQNGSGKSTTARLIDG-----LFEEFEGKVKIDGELLT 72 (277)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCCCEEEECCEECC
Confidence 34568899999999999999999999999 888999999 8999884
No 151
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.41 E-value=1e-13 Score=119.52 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=39.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCee
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~d 55 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.+
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~ 69 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSA-----RLAPDAGEVHYRMRD 69 (258)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCEEEECCcc
Confidence 44578999999999999999999999999 889999999 88887
No 152
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.41 E-value=1.6e-13 Score=118.86 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 31 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 31 SLSIEEGETVGLLGRSGCGKSTLARLLLG-----LEKPAQGTVSFRGQDLY 76 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEEcc
Confidence 34568999999999999999999999999 889999999 8999884
No 153
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.41 E-value=3.8e-13 Score=128.31 Aligned_cols=122 Identities=21% Similarity=0.401 Sum_probs=78.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~ 79 (236)
....++|+.++|+|+||||||||++.|+| ++.|++|+| ++|.++ ...+..++... ++.+-+++..
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~g-----l~~p~~G~I~i~g~~i--~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 435 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTR-----FYDIDEGEILLDGHDL--RDYTLASLRNQVALVSQNVHLFNDTIAN 435 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHh-----ccCCCCceEEECCEEh--hhcCHHHHHhhceEEccCceeecchHHH
Confidence 34568999999999999999999999999 999999999 899998 34444333221 1222232211
Q ss_pred cc------ccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 NV------EFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~~------~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+- .++..+....+ .+.++.+......+ -++||+.+++ |+++++ +++|||++++|..+
T Consensus 436 Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 436 NIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred HHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 11 12222222211 12233322212222 3799999986 999976 67999999999763
No 154
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.41 E-value=2.4e-13 Score=116.38 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=40.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC-----CCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD-----SMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d-----sg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.++ +|+| ++|.++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNR-----MNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCcCCCCceEEEECCEEcc
Confidence 44578999999999999999999999999 88887 9999 8999884
No 155
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.41 E-value=8.8e-14 Score=118.50 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=39.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~G-----l~~p~~G~i~~~g~~~ 85 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSG-----LLQPTSGEVRVAGLVP 85 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CcCCCceEEEECCEEc
Confidence 34567899999999999999999999999 889999999 788876
No 156
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.41 E-value=5.7e-14 Score=117.54 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=39.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~~ 63 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLLKAILG-----LLKPTSGSIRVFGKPL 63 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcC-----CCCCCCCEEEECCccH
Confidence 34568999999999999999999999999 888999999 788876
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.3e-13 Score=120.30 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++..
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----l~~p~~G~i~~~g~~i~~ 73 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNG-----LHVPTQGSVRVDDTLITS 73 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEccc
Confidence 34568999999999999999999999999 889999999 89988843
No 158
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.41 E-value=4.2e-13 Score=113.48 Aligned_cols=44 Identities=34% Similarity=0.536 Sum_probs=40.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDIS 72 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCCCeEEECCEEcC
Confidence 4567899999999999999999999999 889999999 8888874
No 159
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.3e-13 Score=116.81 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=38.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +++ +++|.| ++|.++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSINR-----MHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHh-----cccCCCCCCCceEEEECCEEcc
Confidence 34578999999999999999999999999 654 368998 8999884
No 160
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.40 E-value=1.7e-13 Score=113.90 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=40.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+|+||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 65 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAG-----LSPPLAGRVLLNGGPLD 65 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEecc
Confidence 34568899999999999999999999999 888999999 7888873
No 161
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.8e-13 Score=117.97 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=39.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++. +++|+| ++|.++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laG-----l~~~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNR-----MHEVIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhc-----cCCcccCCCcceEEEECCEecc
Confidence 44578999999999999999999999999 665 379999 8998874
No 162
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.40 E-value=3.8e-13 Score=131.28 Aligned_cols=121 Identities=21% Similarity=0.296 Sum_probs=78.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|+| ++.|++|.| ++|.|+ .+.+..+++... +.+-+.+..+
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~g-----l~~p~~G~I~idg~~i--~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAG-----LYQPWSGEILFDGIPR--EEIPREVLANSVAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEeH--HHCCHHHHHhheeEEecCChhhhccHHHH
Confidence 4578999999999999999999999999 999999999 899999 445544443221 1122222111
Q ss_pred -----cccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 -----VEFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 -----~~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
...+..+..+.+ .+.+..+......+ -++||+.|++ |+++.+ +++||+++++|..+
T Consensus 573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 112222222211 12233222222222 3789999986 999976 77999999999763
No 163
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.4e-12 Score=113.27 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=39.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++. +++|.| ++|.++.
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVLRSLNR-----MNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cccccCCCCCceEEEECCEEcc
Confidence 34568999999999999999999999999 655 589999 8898874
No 164
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2e-13 Score=118.43 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=39.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++. +++|+| ++|.++.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNR-----MNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----hcccccCCCCceEEEECCEECc
Confidence 34578999999999999999999999999 665 489999 8998884
No 165
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2.7e-13 Score=117.01 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=39.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++. +++|.| ++|.++.
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNR-----MYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccccCCCCCcceEEEECCEEcc
Confidence 34578999999999999999999999999 654 589999 8998884
No 166
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.40 E-value=4.4e-13 Score=109.71 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChhHH
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEF 88 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~ 88 (236)
..++|++++|+||||||||||+++|++ ++.+++|.| ++|.+++ ++.....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~------------------~~~q~~~------ 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAG-----QLIPNGDNDEWDGITPV------------------YKPQYID------ 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHc-----CCCCCCcEEEECCEEEE------------------EEcccCC------
Confidence 457899999999999999999999999 889999999 7776542 1100000
Q ss_pred HHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 89 RDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 89 ~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
++||+.+.+ ++++.+ +++|||++++|...
T Consensus 72 -------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 72 -------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred -------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 889998875 888865 67899999998763
No 167
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.40 E-value=2e-13 Score=114.56 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=90.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
.....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++... .... .++++... ..
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~i~~~-----~~~~----~i~~~~q~~~~~~~ 96 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAG-----LLHVESGQIQIDGKTATRG-----DRSR----FMAYLGHLPGLKAD 96 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhC-----CCCCCCeeEEECCEEccch-----hhhh----ceEEeecCcccccC
Confidence 34578999999999999999999999999 889999999 899888421 1111 12222221 12
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
.++.+...... .. .+.. ....++.++..+-+. ....+.+..+|+||+|
T Consensus 97 ~t~~e~l~~~~----~~--~~~~------~~~~~~~~l~~~~l~----~~~~~~~~~LS~G~~q---------------- 144 (214)
T PRK13543 97 LSTLENLHFLC----GL--HGRR------AKQMPGSALAIVGLA----GYEDTLVRQLSAGQKK---------------- 144 (214)
T ss_pred CcHHHHHHHHH----Hh--cCCc------HHHHHHHHHHHcCCh----hhccCChhhCCHHHHH----------------
Confidence 23333322110 00 0100 112233444332221 1112336788888877
Q ss_pred hcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 163 FFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.+...-....-..+.-+|++.+. +|+..++.+...|..+...|.+
T Consensus 145 ------------rv~laral~~~p~llllDEPt~~-LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 145 ------------RLALARLWLSPAPLWLLDEPYAN-LDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred ------------HHHHHHHHhcCCCEEEEeCCccc-CCHHHHHHHHHHHHHHHhCCCE
Confidence 22222223334556677888877 8888888888888776655554
No 168
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.40 E-value=1.6e-13 Score=117.77 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMT-----LEPIDEGQIQVEGEQLY 65 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEcc
Confidence 45678999999999999999999999999 888999999 8998873
No 169
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5e-13 Score=109.68 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+..+.+|+.++++||||||||||++.+|+ ++.|+.|.| .+|..|.
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AG-----f~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAG-----FVTPSRGSIQLNGRRIE 70 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhc-----CcCcccceEEECCEecc
Confidence 44578899999999999999999999999 999999999 8999983
No 170
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.39 E-value=3.8e-13 Score=109.68 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=71.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+...++|++++|+||||||||||+++|++ +..+++|+| ++|.++... ...+.. .++++..+..+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G-----~~~~~~G~i~~~g~~~~~~---~~~~~~----~i~~~~q~~~~~~~ 89 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTG-----DLKPQQGEITLDGVPVSDL---EKALSS----LISVLNQRPYLFDT 89 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCCCEEEECCEEHHHH---HHHHHh----hEEEEccCCeeecc
Confidence 34578999999999999999999999999 888999999 899887422 111111 12333222111100
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.+.+.+ ..-++||+.+.+ ++++.+ +++|||++++|..
T Consensus 90 --------tv~~~i----~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~ 132 (178)
T cd03247 90 --------TLRNNL----GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132 (178)
T ss_pred --------cHHHhh----cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 111111 345889998875 888866 7799999999865
No 171
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.1e-13 Score=120.77 Aligned_cols=44 Identities=30% Similarity=0.527 Sum_probs=40.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~G~i~i~g~~i~ 75 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNA-----LLIPSEGKVYVDGLDTS 75 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEecc
Confidence 4568899999999999999999999999 889999999 8998884
No 172
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.4e-13 Score=115.31 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=39.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+ ++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 62 (214)
T cd03297 18 DFDLNE-EVTGIFGASGAGKSTLLRCIAG-----LEKPDGGTIVLNGTVLF 62 (214)
T ss_pred eEEEcc-eeEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEecc
Confidence 345677 9999999999999999999999 888999999 8898874
No 173
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.4e-13 Score=122.43 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=41.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+...++|++++|+|+||||||||+++|++ ++.+++|+| ++|.++..
T Consensus 46 sl~i~~Ge~~~I~G~nGsGKSTLl~~L~G-----l~~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNG-----LIKSKYGTIQVGDIYIGD 92 (320)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCeEEECCEEccc
Confidence 44578999999999999999999999999 889999999 89988853
No 174
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.6e-13 Score=119.14 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=40.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~G-----l~~~~~G~i~~~g~~~~ 74 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIG-----IEKVKSGEIFYNNQAIT 74 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEECC
Confidence 4568999999999999999999999999 889999999 7998883
No 175
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.39 E-value=9.4e-13 Score=108.99 Aligned_cols=104 Identities=28% Similarity=0.353 Sum_probs=71.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE--cCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII--NADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN---- 80 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii--~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~---- 80 (236)
+....+|++++|+||||||||||+++|++ +. .+++|+| |+|.++... .... .++++..+
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~G-----l~~~~~~~G~i~~~g~~~~~~-----~~~~----~i~~~~q~~~~~ 94 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAG-----RRTGLGVSGEVLINGRPLDKR-----SFRK----IIGYVPQDDILH 94 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCCceEEEECCEeCchH-----hhhh----eEEEccCcccCC
Confidence 34568899999999999999999999999 77 8999999 899988421 1111 12333222
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 VEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
...++.+...... .+ .-++||+.+.+ ++++.+ +++|||++++|..
T Consensus 95 ~~~t~~~~i~~~~----~~------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 95 PTLTVRETLMFAA----KL------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred CCCcHHHHHHHHH----Hh------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 1234443322110 00 16899998874 888866 6799999999875
No 176
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.8e-12 Score=111.27 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=39.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ ++++ ++|+| ++|.++.
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNR-----LLELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCcccCCCCceEEEECCEEcc
Confidence 34567899999999999999999999999 7665 59999 8999884
No 177
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.39 E-value=6.4e-13 Score=129.38 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=77.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~~ 80 (236)
...++|+.++|+|+||||||||++.|+| ++++++|+| ++|.|+ ...+..+++... +.+-+++..+
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~g-----l~~p~~G~I~idg~~l--~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLG-----LYQPTEGSVLLDGVDI--RQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEEh--hhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 3468899999999999999999999999 999999999 899999 445554443221 1111221111
Q ss_pred -----cccChhHHHHH-----HHHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 -----VEFTAKEFRDS-----AVPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 -----~~~s~~~~~~~-----~~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
..++..+..+. +.+.+..+....... .++||+.+++ |+++.+ +++||+++++|..
T Consensus 559 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 559 IALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635 (694)
T ss_pred HhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 11222222211 122233322221222 3789999986 999976 6789999999876
No 178
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.4e-13 Score=119.27 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++++++|.| ++|.++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSR-----LMTPAHGHVWLDGEHIQ 72 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHcC-----CCCCCCcEEEECCEEhh
Confidence 34567899999999999999999999999 888999999 8998884
No 179
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.39 E-value=1.3e-13 Score=125.29 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=37.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL 54 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~ 54 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~G-----l~~p~~G~I~idG~ 86 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNG-----LNPVSRGSVLVKDG 86 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCCcEEEECCE
Confidence 3467899999999999999999999999 889999999 7885
No 180
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.39 E-value=1.2e-13 Score=129.77 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~~~ 69 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTG-----IYTRDAGSILYLGKEVT 69 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEECC
Confidence 34567899999999999999999999999 889999999 7998883
No 181
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.39 E-value=3.4e-13 Score=125.75 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=38.3
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCee
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~d 55 (236)
...+|++++|+|+||||||||+++|++ ++.|++|.| |.|.+
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~g-----L~~P~~G~i~~~g~~ 354 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAG-----LLPPSSGSIIFDGQD 354 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEEeCcc
Confidence 467899999999999999999999999 999999999 88877
No 182
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=2.6e-13 Score=119.00 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=40.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 76 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNG-----LIISETGQTIVGDYAIP 76 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEEcc
Confidence 4568899999999999999999999999 888999999 7898874
No 183
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.39 E-value=2.1e-12 Score=109.22 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=73.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
.....+|++++|+||||||||||+++|+| ++.+++|+| ++|.++............+ .+...........++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMG-----LLPVKSGSIRLDGEDITKLPPHERARAGI-AYVPQGREIFPRLTVE 93 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCEEEECCEECCCCCHHHHHHhCe-EEeccCCcccCCCcHH
Confidence 34567899999999999999999999999 888999999 8998884322111101111 1111110111112222
Q ss_pred HHHHH------------HHHHHHHH-----hhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDS------------AVPLISEI-----LSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~------------~~~~i~~~-----~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+.... +...+... ......--++||+.+.+ ++++.+ +++|||++++|..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~ 165 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS 165 (230)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 21110 11111111 11222334799998875 888865 6799999999876
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.39 E-value=9.7e-14 Score=130.61 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~G-----l~~p~~G~i~~~g~~i~ 70 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSG-----IHEPTKGTITINNINYN 70 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcC-----CcCCCccEEEECCEECC
Confidence 34567899999999999999999999999 888999999 8999884
No 185
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.39 E-value=1.1e-13 Score=118.91 Aligned_cols=43 Identities=30% Similarity=0.284 Sum_probs=38.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCee
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~d 55 (236)
+...++|++++|+||||||||||+++|++ ++++++|.| ++|.+
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLLGCLAG-----RLAPDHGTATYIMRS 66 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEEeccc
Confidence 44578899999999999999999999999 888999999 78776
No 186
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.8e-13 Score=117.15 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=39.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE---cCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII---NADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii---~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++ ++++|+| ++|.++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~G~i~~~g~~i~ 70 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTFLRCFNR-----MNDKIAKIDGLVEIEGKDVK 70 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCCCCceEEEECCEecc
Confidence 45678899999999999999999999999 65 4689999 8999984
No 187
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.39 E-value=1e-12 Score=110.35 Aligned_cols=45 Identities=33% Similarity=0.411 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ +..+++|+| ++|.++.
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~ 69 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAG-----LYKPTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CcCCCCCeEEECCEEhH
Confidence 34578999999999999999999999999 888999999 8898873
No 188
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.38 E-value=1.7e-12 Score=112.23 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=72.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
.....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++... ...+ .++..........++.
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~G-----l~~p~~G~i~~~g~~~~~~------~~~i-~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAG-----LETPSAGELLAGTAPLAEA------REDT-RLMFQDARLLPWKKVI 99 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCeEEEECCEEHHHh------hCce-EEEecCccCCCCCcHH
Confidence 34568899999999999999999999999 888999999 677665210 0111 0111110001112222
Q ss_pred HHH---------HHHHHHHHHH----hhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 87 EFR---------DSAVPLISEI----LSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 87 ~~~---------~~~~~~i~~~----~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
+.. ..+.+.++.+ ......--++||+.+.+ ++++.+ +++|||++++|....
T Consensus 100 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~ 169 (257)
T PRK11247 100 DNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR 169 (257)
T ss_pred HHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 221 1122222221 01122335899998875 888866 679999999997643
No 189
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.2e-13 Score=117.47 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +..+++|.| ++|.++.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~~~ 70 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCG-----DPRATSGRIVFDGKDIT 70 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcC-----CCCCCCceEEECCEecC
Confidence 34578999999999999999999999999 888999999 8998874
No 190
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.2e-13 Score=117.16 Aligned_cols=45 Identities=29% Similarity=0.453 Sum_probs=40.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 64 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAG-----FLTPASGSLTLNGQDHT 64 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCeecC
Confidence 34567899999999999999999999999 889999999 8998874
No 191
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.38 E-value=3.2e-13 Score=112.79 Aligned_cols=43 Identities=26% Similarity=0.462 Sum_probs=39.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
...++|++++|+||||||||||+++|++ +..+++|+| ++|.++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~ 66 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAG-----LLPPAAGTIKLDGGDI 66 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEeC
Confidence 4567899999999999999999999999 888999999 888876
No 192
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.38 E-value=1.8e-13 Score=114.71 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAG-----FIEPASGSIKVNDQSHT 63 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEEcc
Confidence 34567899999999999999999999999 889999999 8898884
No 193
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.6e-13 Score=118.34 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=40.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+|+||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 69 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNG-----ILKPTSGSVLIRGEPIT 69 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEECC
Confidence 4568899999999999999999999999 888999999 7999884
No 194
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.38 E-value=2.2e-13 Score=128.75 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=39.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+ ++|.| ++|.++.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G-----~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILR-----LLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCcCCccceEEEECCEecc
Confidence 34567899999999999999999999999 6654 79999 8999884
No 195
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.38 E-value=7.4e-14 Score=114.19 Aligned_cols=106 Identities=23% Similarity=0.377 Sum_probs=70.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|.++.. .....+.. .++++.+
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G-----~~~~~~G~v~~~g~~~~~--~~~~~~~~----~i~~~~q------- 80 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAG-----LLKPSSGEILLDGKDLAS--LSPKELAR----KIAYVPQ------- 80 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEECCc--CCHHHHHH----HHhHHHH-------
Confidence 44568999999999999999999999999 889999999 78988842 22222211 1222211
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+...+ -+.+.. .....-++||+.+.+ ++++.+ +++|||+.++|..
T Consensus 81 -~l~~~--gl~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 131 (180)
T cd03214 81 -ALELL--GLAHLA-DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131 (180)
T ss_pred -HHHHc--CCHhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11110 011121 223445889998875 888866 6789999999865
No 196
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.38 E-value=3.3e-13 Score=111.67 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=40.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+|+||||||||+++|++ +.++++|.| ++|.++.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~i~ 65 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAG-----IMQPSSGNIYYKNCNIN 65 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCcccC
Confidence 34567899999999999999999999999 888999999 7888873
No 197
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.38 E-value=3.2e-13 Score=114.17 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=39.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc---CCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN---ADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~---~dsg~i-~~g~dI 56 (236)
+....+|++++|+||||||||||+++|++ ++. +++|+| ++|.++
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G-----~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISG-----RVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhC-----ccCCCCCCceEEEECCEEC
Confidence 44578999999999999999999999999 777 899999 789887
No 198
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.1e-13 Score=116.83 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=38.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +.. +++|+| ++|.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 23 NLDIEENQVTALIGPSGCGKSTFLRTLNR-----MNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cccccCCCCCceEEEECCEEcc
Confidence 34567899999999999999999999999 554 278999 8998884
No 199
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=6.1e-13 Score=114.16 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=39.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|+| +..+ ++|+| ++|.++..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNR-----MNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHh-----ccCcccCCCCccEEEECCEeccc
Confidence 34568899999999999999999999999 6553 78999 89998853
No 200
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.7e-12 Score=111.27 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=39.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|+| +.. +++|+| ++|.++..
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSINR-----MNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----cccccCCCCCceEEEECCEEccc
Confidence 34567899999999999999999999999 543 689999 88998853
No 201
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.2e-13 Score=119.09 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=39.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC---Cce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS---MQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds---g~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| ++.+++ |+| ++|.++.
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G-----~~~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLING-----LLLPDDNPNSKITVDGITLT 75 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc-----ccCCCCCCCcEEEECCEECC
Confidence 4568899999999999999999999999 887876 888 8999884
No 202
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.38 E-value=1.7e-13 Score=129.01 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=40.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++.
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 76 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAG-----IVPPDSGTLEIGGNPCA 76 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34568899999999999999999999999 889999999 7998884
No 203
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.38 E-value=2.1e-13 Score=117.14 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=37.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
...+|++++|+||||||||||+++|++ ++.+++|.| ++|..|
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G-----~~~p~~G~i~~~g~~i 63 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAG-----VLKPDEGDIEIELDTV 63 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhC-----CCcCCCCeEEECCceE
Confidence 356899999999999999999999999 889999999 676544
No 204
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.38 E-value=1.3e-12 Score=108.84 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 73 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFR-----FLEAEEGKIEIDGIDIS 73 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCCCeEEECCEEhH
Confidence 34568999999999999999999999999 889999999 8998874
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.37 E-value=1.8e-13 Score=128.72 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-----l~~p~~G~I~~~g~~~~ 328 (510)
T PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFG-----VDKRAGGEIRLNGKDIS 328 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCcCCCCeEEECCEECC
Confidence 44578899999999999999999999999 888999999 7898884
No 206
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.37 E-value=8.4e-13 Score=113.24 Aligned_cols=98 Identities=22% Similarity=0.371 Sum_probs=70.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChhH
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKE 87 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~ 87 (236)
..+.+|++++|+|+||||||||+++|.+ ++.|++|+| |+|.||.. .+. ..
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~-----L~~pt~G~i~f~g~~i~~--~~~----------------------~~ 84 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILG-----LEEPTSGEILFEGKDITK--LSK----------------------EE 84 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHc-----CcCCCCceEEEcCcchhh--cch----------------------hH
Confidence 3578899999999999999999999999 999999999 89999832 221 11
Q ss_pred HHHHHHHHHHHHh----hCCCceE-EechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 88 FRDSAVPLISEIL----SRDHIPF-IVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 88 ~~~~~~~~i~~~~----~~~~~~i-l~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
..+.+.+.++..- -..+.|+ ++||+.+++ ||++-. ++.||+++++|..
T Consensus 85 ~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS 143 (268)
T COG4608 85 RRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 (268)
T ss_pred HHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence 1111222222110 1124554 799999986 888844 5689999999975
No 207
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.37 E-value=1.6e-13 Score=115.68 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=35.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQ 52 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~ 52 (236)
....+|++++|+||||||||||+++|++ ++.+++|+| ++
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~ 68 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYA-----NYLPDSGRILVR 68 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCeEEEe
Confidence 4568899999999999999999999999 888999999 65
No 208
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5.8e-13 Score=123.05 Aligned_cols=121 Identities=23% Similarity=0.380 Sum_probs=83.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccccc---
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEF--- 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~--- 83 (236)
....++|+.++|+|+|||||||++++|.+ +.. ++|.| .+|.|| ...+.+.+++. +++++++..+
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~Llr-----F~d-~sG~I~IdG~di--k~~~~~SlR~~----Ig~VPQd~~LFnd 439 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLR-----FFD-YSGSILIDGQDI--KEVSLESLRQS----IGVVPQDSVLFND 439 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHH-----Hhc-cCCcEEECCeeH--hhhChHHhhhh----eeEeCCcccccch
Confidence 44578999999999999999999999999 888 99999 799999 45666666654 5555443221
Q ss_pred -------------ChhHHHHHH-----HHHHHHHhhC------CCceEEechHHHHH---HHHhcC---CCCCCCCcccc
Q 048453 84 -------------TAKEFRDSA-----VPLISEILSR------DHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMD 133 (236)
Q Consensus 84 -------------s~~~~~~~~-----~~~i~~~~~~------~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld 133 (236)
+..+..+.| ++.+..+... .+...++||..|++ |+++++ +++||+|+++|
T Consensus 440 TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD 519 (591)
T KOG0057|consen 440 TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALD 519 (591)
T ss_pred hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccc
Confidence 111111111 2223222111 12335899999996 999977 67999999999
Q ss_pred hhhhccc
Q 048453 134 ESCFGSL 140 (236)
Q Consensus 134 ~~~~~~l 140 (236)
.++-+++
T Consensus 520 ~~TE~~i 526 (591)
T KOG0057|consen 520 SETEREI 526 (591)
T ss_pred hhhHHHH
Confidence 8764444
No 209
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.37 E-value=3.9e-13 Score=117.04 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=94.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC--------CCce-ecCeecccCCCChhhhcCCceeeccccC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD--------SMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVS 78 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d--------sg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~ 78 (236)
+....+|++++|+||||||||||+++|+| ++.++ +|.| ++|.++. .....++... +.++.
T Consensus 21 sl~i~~Ge~~~l~G~nGsGKSTLl~~laG-----~~~p~~~~~~~~~~G~i~~~g~~~~--~~~~~~~~~~----~~~v~ 89 (272)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKALAG-----DLTGGGAPRGARVTGDVTLNGEPLA--AIDAPRLARL----RAVLP 89 (272)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCcccccccCCceEEEECCEEcc--cCCHHHHHhh----cEEec
Confidence 34578899999999999999999999999 77777 8998 8898873 2222232221 22232
Q ss_pred cc----cccChhHHHHHHHHHHHHHhhCCC-ceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhc
Q 048453 79 PN----VEFTAKEFRDSAVPLISEILSRDH-IPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCIC 153 (236)
Q Consensus 79 ~~----~~~s~~~~~~~~~~~i~~~~~~~~-~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~ 153 (236)
.+ ..+++.+..... ...... ......-....++.++..+-+. ....+.+.++|+||+|
T Consensus 90 q~~~~~~~~tv~e~l~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~~q------- 152 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLG------RYPHARRAGALTHRDGEIAWQALALAGAT----ALVGRDVTTLSGGELA------- 152 (272)
T ss_pred ccCCCCCCCcHHHHHhhc------ccccccccccCCHHHHHHHHHHHHHcCcH----hhhcCCcccCCHHHHH-------
Confidence 21 123333322110 000000 0000000122344444443221 2223457899999988
Q ss_pred ccchhhhhhhcCCCCCCCcchhHhhCCHHH---------HHHHHHccChhHhhccCCCchHHHHHHHHHHHHh-CCC
Q 048453 154 TLNTVLYRLFFAGDEPVGPDSDLARDSSSY---------SYDLLKDLDPVAANRIHPNNYRKINQYLSLYART-GVL 220 (236)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~t-g~~ 220 (236)
.+....... .-..+.-+|++.+. +|+..+.++...|..+... |.+
T Consensus 153 ---------------------rv~laral~~~~~~~~~~~~p~lllLDEPt~~-LD~~~~~~l~~~l~~~~~~~~~t 207 (272)
T PRK13547 153 ---------------------RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAA-LDLAHQHRLLDTVRRLARDWNLG 207 (272)
T ss_pred ---------------------HHHHHHHHhccccccccCCCCCEEEEcCcccc-CCHHHHHHHHHHHHHHHHhcCCE
Confidence 222211121 13667788999988 9999999999999877665 654
No 210
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.37 E-value=2.9e-13 Score=114.80 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=40.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~----dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+ ++|+| ++|.++.
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~~~~~G~i~~~g~~~~ 55 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILG-----LLPPGLTQTSGEILLDGRPLL 55 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCccCccccEEEECCEech
Confidence 44567899999999999999999999999 7777 89999 8998873
No 211
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=6.8e-13 Score=114.42 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=38.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc--C---CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN--A---DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~--~---dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++. + ++|+| ++|.++.
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNL-----MIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----hccCCCCCCCceEEEECCEEcc
Confidence 34568899999999999999999999999 655 3 58999 8999884
No 212
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.37 E-value=1.6e-13 Score=117.74 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=90.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
+....+|++++|+||||||||||+++|+| +++ ++|.| ++|.++. ..+..++... ++++... ..
T Consensus 16 sl~i~~Gei~~l~G~nGsGKSTLl~~l~G-----l~~-~~G~i~~~g~~i~--~~~~~~~~~~----i~~v~q~~~~~~~ 83 (248)
T PRK03695 16 SAEVRAGEILHLVGPNGAGKSTLLARMAG-----LLP-GSGSIQFAGQPLE--AWSAAELARH----RAYLSQQQTPPFA 83 (248)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcC-----CCC-CCeEEEECCEecC--cCCHHHHhhh----eEEecccCccCCC
Confidence 44578899999999999999999999999 654 48999 8999884 2233332221 2222211 12
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
.++.++.... .... .. ..-....+..++..+-+ .....+.+..+|+||+|
T Consensus 84 ~tv~~nl~~~-------~~~~-~~--~~~~~~~~~~~l~~~~l----~~~~~~~~~~LS~G~~q---------------- 133 (248)
T PRK03695 84 MPVFQYLTLH-------QPDK-TR--TEAVASALNEVAEALGL----DDKLGRSVNQLSGGEWQ---------------- 133 (248)
T ss_pred ccHHHHHHhc-------CccC-CC--cHHHHHHHHHHHHHcCC----HhHhcCCcccCCHHHHH----------------
Confidence 3333322110 0000 00 00011223444433322 12223347899999988
Q ss_pred hcCCCCCCCcchhHhhCCHHHH-------HHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 163 FFAGDEPVGPDSDLARDSSSYS-------YDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l-------~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++........ -..+.-+|++.+. +|+..++.+.+.|..+...|.+
T Consensus 134 ------------rv~la~al~~~~~~~~p~p~llllDEPt~~-LD~~~~~~l~~~L~~~~~~~~t 185 (248)
T PRK03695 134 ------------RVRLAAVVLQVWPDINPAGQLLLLDEPMNS-LDVAQQAALDRLLSELCQQGIA 185 (248)
T ss_pred ------------HHHHHHHHhccccccCCCCCEEEEcCCccc-CCHHHHHHHHHHHHHHHhCCCE
Confidence 2222111111 1267788999988 8999998888888877655654
No 213
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3.3e-12 Score=110.53 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=39.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
+...++|++++|+|+||||||||+++|+| ++.+ ++|+| ++|.++.
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNR-----MNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHc-----ccccccCCCCceEEEECCEecc
Confidence 44578999999999999999999999999 6654 79999 8999884
No 214
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.37 E-value=1.8e-12 Score=110.14 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=40.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| +..+++|+| ++|.++.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 67 (237)
T cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQR-----FYVPENGRVLVDGHDLA 67 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CcCCCCCEEEECCeehH
Confidence 4568999999999999999999999999 889999999 8998874
No 215
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.36 E-value=8.4e-13 Score=124.67 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=44.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQK 67 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~ 67 (236)
+...++|+.++|+||||||||||++.|+| +.++++|+| ++|.++ .+.+..++.
T Consensus 342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~I~~~g~~i--~~~~~~~lr 395 (529)
T TIGR02857 342 SFTVPPGERVALVGPSGAGKSTLLNLLLG-----FVDPTEGSIAVNGVPL--ADADADSWR 395 (529)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEeh--hhCCHHHHH
Confidence 34578999999999999999999999999 899999999 899999 444444443
No 216
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=3.1e-12 Score=110.30 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=38.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| ++. +++|+| ++|.++.
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----l~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 33 MQIPKNSVTALIGPSGCGKSTFIRCLNR-----MNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCcccCCCcceEEEECCEEcc
Confidence 4568899999999999999999999999 655 379999 8898874
No 217
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.36 E-value=7.5e-13 Score=129.15 Aligned_cols=122 Identities=22% Similarity=0.315 Sum_probs=79.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~ 79 (236)
....++|+.++|+||||||||||++.|+| ++.|++|+| ++|.|+ ...+..+++... +.+-+++..
T Consensus 494 sl~i~~G~~vaIvG~SGsGKSTLlklL~g-----l~~p~~G~I~idg~~i--~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 566 (708)
T TIGR01193 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVG-----FFQARSGEILLNGFSL--KDIDRHTLRQFINYLPQEPYIFSGSILE 566 (708)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCCcEEEECCEEH--HHcCHHHHHHheEEEecCceehhHHHHH
Confidence 34578999999999999999999999999 999999999 899999 445554443221 112222211
Q ss_pred c------cccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 N------VEFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~------~~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+ ...+..+..+.+ .+.+..+......+ -++||+.+++ ||++.+ +++||+++++|..+
T Consensus 567 Ni~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 567 NLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred HHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 1 112222222211 22233322222222 3789999986 999976 77999999999764
No 218
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.36 E-value=1.3e-13 Score=129.18 Aligned_cols=45 Identities=29% Similarity=0.425 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 63 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFG-----IYQKDSGSILFQGKEID 63 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcC-----CCCCCceEEEECCEECC
Confidence 34568899999999999999999999999 888999999 7999884
No 219
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.36 E-value=1.6e-12 Score=108.01 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=70.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE--EcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI--INADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV--- 81 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i--i~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~--- 81 (236)
+....+|++++|+||||||||||+++|++ . ..+++|+| ++|.++.... ...+.+ ..+.++....
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G-----~~~~~p~~G~i~~~g~~~~~~~--~~~~~~---~~i~~v~q~~~~~ 89 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMG-----HPKYEVTEGEILFKGEDITDLP--PEERAR---LGIFLAFQYPPEI 89 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhC-----CCcCCCCccEEEECCEECCcCC--HHHHhh---CcEEEeecChhhc
Confidence 34568899999999999999999999999 5 47899999 8999884322 222111 1123332221
Q ss_pred -ccChhHHHHHHHHHHHHHhhCCCce-EEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 82 -EFTAKEFRDSAVPLISEILSRDHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 82 -~~s~~~~~~~~~~~i~~~~~~~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
..++. +... ..+ -++||+.+.+ ++++.+ +++|||+.++|..
T Consensus 90 ~~~~~~-----------~~l~--~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 138 (200)
T cd03217 90 PGVKNA-----------DFLR--YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138 (200)
T ss_pred cCccHH-----------HHHh--hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 11211 1111 122 5899998875 888866 6799999999865
No 220
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.36 E-value=5.7e-13 Score=126.90 Aligned_cols=120 Identities=26% Similarity=0.456 Sum_probs=80.9
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCccc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSPNV 81 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~~~ 81 (236)
..++|+.++|+||||||||||++.|++ +..+++|+| .+|.|| ...+...++.. ++.+-+++..+-
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r-----~~~~~~G~I~idg~dI--~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI 423 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLR-----LYDPTSGEILIDGIDI--RDISLDSLRKRIGIVSQDPLLFSGTIRENI 423 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCCCeEEECCEeh--hhcCHHHHHHhccEEcccceeecccHHHHH
Confidence 478999999999999999999999999 999999999 789999 45555554422 122333332111
Q ss_pred c-----cChhHHHHH-----HHHHHHHHhhCCCceE------EechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 82 E-----FTAKEFRDS-----AVPLISEILSRDHIPF------IVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 82 ~-----~s~~~~~~~-----~~~~i~~~~~~~~~~i------l~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
. .+..+..+. +.+.+.++......++ ++||+.|++ ||++.+ +++||+++++|..+
T Consensus 424 ~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~t 500 (567)
T COG1132 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTET 500 (567)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHh
Confidence 1 222222222 2333444432223333 688999986 999977 67999999999874
No 221
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=4.2e-13 Score=113.93 Aligned_cols=44 Identities=23% Similarity=0.451 Sum_probs=40.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g-----~~~~~~G~i~~~g~~~~ 65 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAG-----FETPTSGEILLDGKDIT 65 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEEcC
Confidence 4567899999999999999999999999 888999999 8898884
No 222
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.36 E-value=1.8e-13 Score=128.18 Aligned_cols=44 Identities=32% Similarity=0.243 Sum_probs=39.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.....+|++++|+||||||||||+++|+| ++.+++|.| ++|.++
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G-----~~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAG-----ELPLLSGERQSQFSHI 67 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCCceEEECCccc
Confidence 44568899999999999999999999999 889999999 677766
No 223
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.1e-12 Score=108.61 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=39.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+ ++|+| ++|.++.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFLRTLNR-----MNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhc-----cccCCcCCCCceEEEECCEecc
Confidence 34578999999999999999999999999 6665 58999 8898874
No 224
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.8e-12 Score=109.51 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++++++|+| ++|.++.
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 68 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMR-----FYDPQKGQILIDGIDIR 68 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CcCCCCCEEEECCEeHH
Confidence 45678999999999999999999999999 888999999 7888874
No 225
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.35 E-value=9e-13 Score=123.84 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 272 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G-----~~~p~~G~I~~~g~~i~ 317 (501)
T PRK10762 272 SFTLRKGEILGVSGLMGAGRTELMKVLYG-----ALPRTSGYVTLDGHEVV 317 (501)
T ss_pred eEEEcCCcEEEEecCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34568899999999999999999999999 889999999 8999884
No 226
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2e-12 Score=109.59 Aligned_cols=45 Identities=31% Similarity=0.468 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 67 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPR-----FYDVDSGRILIDGHDVR 67 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cccCCCCEEEECCEEhh
Confidence 34578999999999999999999999999 888999999 7898874
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3.6e-13 Score=115.40 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=38.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ +.. +++|+| ++|.++.
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----l~~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSINR-----MNDHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHhc-----cccCCCCCCcceEEEECCEEcc
Confidence 34568899999999999999999999999 655 389999 8998874
No 228
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=3.9e-13 Score=114.40 Aligned_cols=45 Identities=36% Similarity=0.609 Sum_probs=40.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +..+++|.| ++|.++.
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G-----~~~p~~G~v~i~g~~~~ 64 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAG-----FIKPDSGKILLNGKDIT 64 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CcCCCceEEEECCEEcC
Confidence 34567899999999999999999999999 889999999 7999884
No 229
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.35 E-value=4.5e-12 Score=108.67 Aligned_cols=45 Identities=33% Similarity=0.523 Sum_probs=39.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE--EcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI--INADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i--i~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ + +.+++|.| ++|.++.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----l~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 27 NLSINKGEIHAIMGPNGSGKSTLSKVIAG-----HPAYKILEGDILFKGESIL 74 (252)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHHHHHcC-----CCcCcCCCceEEECCEEcc
Confidence 34568899999999999999999999999 5 46899999 7898874
No 230
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.35 E-value=2.9e-13 Score=130.31 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| |+|.++.
T Consensus 344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~G-----l~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 344 SFDLWPGETLSLVGESGSGKSTTGRALLR-----LVESQGGEIIFNGQRID 389 (623)
T ss_pred EeEEcCCCEEEEECCCCCCHHHHHHHHHc-----CCCCCCcEEEECCEECC
Confidence 34568999999999999999999999999 888999999 8999984
No 231
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.7e-13 Score=116.35 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=39.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
....+|++++|+|+||||||||+++|+| ++. +++|.| ++|.++.
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~G-----l~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTYIKTLNR-----MVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHh-----hccCCCCCCCceeEEECCEEcc
Confidence 4568899999999999999999999999 665 689999 8998884
No 232
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.35 E-value=8.9e-13 Score=120.58 Aligned_cols=164 Identities=20% Similarity=0.134 Sum_probs=103.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccC----cccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVS----PNVE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~----~~~~ 82 (236)
+...++|++.+|+|.||+|||||+++|.| ++.||+|+| .+|..+.-..|...-..++ +++. ..+.
T Consensus 24 ~l~v~~GeIHaLLGENGAGKSTLm~iL~G-----~~~P~~GeI~v~G~~v~~~sP~dA~~~GI-----GMVhQHF~Lv~~ 93 (501)
T COG3845 24 SLSVKKGEIHALLGENGAGKSTLMKILFG-----LYQPDSGEIRVDGKEVRIKSPRDAIRLGI-----GMVHQHFMLVPT 93 (501)
T ss_pred eeeecCCcEEEEeccCCCCHHHHHHHHhC-----cccCCcceEEECCEEeccCCHHHHHHcCC-----cEEeeccccccc
Confidence 44568899999999999999999999999 999999999 6999986555655554443 3332 2234
Q ss_pred cChhHHHHHHHHHHHHHhhCCCce-EEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIP-FIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYR 161 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~-il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~ 161 (236)
+++.+..-... . ....+ +-.......+..+.+.+-++.++.. .+.++|-|+||
T Consensus 94 lTV~ENiiLg~------e-~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~----~V~dLsVG~qQ--------------- 147 (501)
T COG3845 94 LTVAENIILGL------E-PSKGGLIDRRQARARIKELSERYGLPVDPDA----KVADLSVGEQQ--------------- 147 (501)
T ss_pred cchhhhhhhcC------c-cccccccCHHHHHHHHHHHHHHhCCCCCccc----eeecCCcchhH---------------
Confidence 44433321100 0 00000 0011223345555555544443333 27788888888
Q ss_pred hhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 162 LFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
+++..-..+.-..|.-+|+++|- +.|.-..++...|..+...|+++
T Consensus 148 -------------RVEIlKaLyr~a~iLILDEPTaV-LTP~E~~~lf~~l~~l~~~G~tI 193 (501)
T COG3845 148 -------------RVEILKALYRGARLLILDEPTAV-LTPQEADELFEILRRLAAEGKTI 193 (501)
T ss_pred -------------HHHHHHHHhcCCCEEEEcCCccc-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 34333333444566778888777 88888888888888888888864
No 233
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=2.1e-13 Score=128.25 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=39.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC--CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA--DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~--dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+ ++|.| ++|.++.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSG-----VYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhC-----CCCCCCCCeEEEECCEECC
Confidence 44567899999999999999999999999 7665 89999 8999884
No 234
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.35 E-value=1e-12 Score=128.40 Aligned_cols=122 Identities=26% Similarity=0.407 Sum_probs=78.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~ 79 (236)
....++|+.++|+||||||||||++.|+| ++.+++|+| ++|.++. +.+..++... ++.+-+.+..
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~g-----l~~p~~G~I~idg~~i~--~~~~~~lr~~i~~v~Q~~~lF~gTIre 573 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQN-----LYQPTGGQVLLDGVPLV--QYDHHYLHRQVALVGQEPVLFSGSVRE 573 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHh-----ccCCCCCEEEECCEEHH--hcCHHHHHhhceEEecCccccccCHHH
Confidence 34578999999999999999999999999 999999999 8999984 3443333221 1122222211
Q ss_pred c-----cccChhHHHHHH-----HHHHHHHhhCCC------ceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 N-----VEFTAKEFRDSA-----VPLISEILSRDH------IPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~-----~~~s~~~~~~~~-----~~~i~~~~~~~~------~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
| ...+..+..+.+ .+.+.++..... ..-++||+.+++ |+++++ +++||+++++|.++
T Consensus 574 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 1 111211211111 122322211111 124799999986 999977 77999999999864
No 235
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.4e-12 Score=110.54 Aligned_cols=44 Identities=18% Similarity=0.415 Sum_probs=38.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|++ ++. +++|+| ++|.++.
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~G-----l~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINR-----MNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCcccCCCCceEEEECCEEcc
Confidence 3567899999999999999999999999 654 689999 8898874
No 236
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.35 E-value=2.7e-13 Score=127.39 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~I~~~g~~i~ 69 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSG-----NYQPDAGSILIDGQEMR 69 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCCEEEECCEECC
Confidence 34568899999999999999999999999 888999999 7898884
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.35 E-value=9.8e-13 Score=112.45 Aligned_cols=45 Identities=36% Similarity=0.534 Sum_probs=39.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE--cCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII--NADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii--~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++ .+++|.| ++|.++.
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAG-----REDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcC-----CccCCCCceEEEECCCccc
Confidence 44578999999999999999999999999 63 6899999 7888874
No 238
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.5e-13 Score=119.42 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|.++.
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 72 (272)
T PRK15056 27 SFTVPGGSIAALVGVNGSGKSTLFKALMG-----FVRLASGKISILGQPTR 72 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEhH
Confidence 34568899999999999999999999999 888999999 8998873
No 239
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.34 E-value=2.4e-12 Score=109.45 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++++++|+| ++|.++.
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLER-----FYDPTSGEILLDGVDIR 68 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHHHHHHhc-----cCCCCCCEEEECCEehh
Confidence 34578999999999999999999999999 888999999 8898874
No 240
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.3e-12 Score=112.03 Aligned_cols=45 Identities=16% Similarity=0.414 Sum_probs=38.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++.+ ++|.| ++|.++.
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 24 NLDVQRGTVNALIGPSGCGKTTFLRAINR-----MHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCcCCCCceeEEECCEEcc
Confidence 34567899999999999999999999999 6654 37998 8998884
No 241
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.34 E-value=6.6e-13 Score=115.27 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +..+++|+| ++|.++.
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 32 SLSLKSGETVALLGRSGCGKSTLARLLVG-----LESPSQGNVSWRGEPLA 77 (268)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEecc
Confidence 34568899999999999999999999999 888999999 8998884
No 242
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.34 E-value=1.1e-12 Score=110.57 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=40.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++++++|+| ++|.++.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMITG-----ILRPTSGEIIFDGHPWT 65 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEecc
Confidence 34567899999999999999999999999 888999999 7888763
No 243
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.34 E-value=1.6e-12 Score=124.40 Aligned_cols=123 Identities=23% Similarity=0.302 Sum_probs=78.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~ 79 (236)
....++|+.++|+|+||||||||++.|+| +.+|++|+| ++|.++ ...+..++.... +.+-+.+..
T Consensus 355 nl~i~~G~~v~IvG~sGsGKSTLl~lL~g-----l~~p~~G~I~i~g~~i--~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~ 427 (588)
T PRK13657 355 SFEAKPGQTVAIVGPTGAGKSTLINLLQR-----VFDPQSGRILIDGTDI--RTVTRASLRRNIAVVFQDAGLFNRSIED 427 (588)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----CcCCCCCEEEECCEEh--hhCCHHHHHhheEEEecCcccccccHHH
Confidence 34568999999999999999999999999 999999999 899998 445544443221 112222211
Q ss_pred c-----cccChhHHHHH-----HHHHHHHHhhCCC------ceEEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 80 N-----VEFTAKEFRDS-----AVPLISEILSRDH------IPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 80 ~-----~~~s~~~~~~~-----~~~~i~~~~~~~~------~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
+ ...+..+.... ..+.+..+..... ...++||+.+++ |+++++ +++|||++++|..+.
T Consensus 428 Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~ 507 (588)
T PRK13657 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507 (588)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 1 11111111111 1112222111111 224899999986 999977 779999999998643
No 244
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.7e-12 Score=106.85 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=78.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChhHHH
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFR 89 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~ 89 (236)
.++|++++|.||||+||||++++||. ++.||+|.| .+|.|+- +-+..-+.++-- +.+-...+..+++.+..
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiat-----lL~P~~G~v~idg~d~~--~~p~~vrr~IGV-l~~e~glY~RlT~rEnl 96 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTV--RDPSFVRRKIGV-LFGERGLYARLTARENL 96 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHH-----hccCCCceEEEeecccc--cChHHHhhhcce-ecCCcChhhhhhHHHHH
Confidence 57899999999999999999999999 999999999 6999983 333333332211 11222222334443322
Q ss_pred HH-----------HHHHHHHHhh--------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhhhccc
Q 048453 90 DS-----------AVPLISEILS--------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCFGSL 140 (236)
Q Consensus 90 ~~-----------~~~~i~~~~~--------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~~~l 140 (236)
.. ....++++.. ..+.--++-|+.+.+ ||++++ +++|||++.+|-.+.+.+
T Consensus 97 ~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~ 172 (245)
T COG4555 97 KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF 172 (245)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH
Confidence 21 1112222211 123345677888775 999977 679999999997654433
No 245
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=8.2e-13 Score=112.13 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=40.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| +.++++|.| ++|.++.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----l~~~~~G~v~~~g~~~~ 66 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFR-----FYDVSSGSILIDGQDIR 66 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCCCEEEECCEEhh
Confidence 4567899999999999999999999999 889999999 7898884
No 246
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.34 E-value=2e-12 Score=125.94 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=78.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~ 79 (236)
....++|+.++|+|+||||||||++.|+| ++.|++|+| ++|.++ ...+..+++... +.+-+.+..
T Consensus 477 ~l~i~~G~~vaivG~sGsGKSTL~~ll~g-----~~~p~~G~I~idg~~i--~~~~~~~~r~~i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQR-----LYTPQHGQVLVDGVDL--AIADPAWLRRQMGVVLQENVLFSRSIRD 549 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEeh--hhCCHHHHHHhCeEEccCCeehhhhHHH
Confidence 34578999999999999999999999999 899999999 899999 444444433211 112222211
Q ss_pred c-----cccChhHHHHH-----HHHHHHHHhhCCCc------eEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 N-----VEFTAKEFRDS-----AVPLISEILSRDHI------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~-----~~~s~~~~~~~-----~~~~i~~~~~~~~~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+ ...+..+..+. +.+.+..+...... .-++||+.+++ |+++.+ +++|||++++|..+
T Consensus 550 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 550 NIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 1 11222222211 12223332211122 23789999886 999976 67899999998763
No 247
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=3.9e-12 Score=105.06 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=70.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE--cCCCCce-ecCeecccCCCChhhhcCCceeeccccCc----cc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII--NADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSP----NV 81 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii--~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~----~~ 81 (236)
....+|++++|+||||||||||+++|++ +. .+++|+| ++|.++. ..... .+.++.. ..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~~~G~i~~~g~~~~------~~~~~----~i~~~~q~~~~~~ 92 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAG-----RKTAGVITGEILINGRPLD------KNFQR----STGYVEQQDVHSP 92 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC-----CCcCCCcceEEEECCEehH------HHhhh----ceEEecccCcccc
Confidence 4567899999999999999999999999 43 4789999 7898873 11111 1222222 12
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 82 EFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.+++.++..... ... -++||+.+.+ ++++.+ +++|||++++|..
T Consensus 93 ~~tv~~~l~~~~-----~~~-----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~ 142 (192)
T cd03232 93 NLTVREALRFSA-----LLR-----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142 (192)
T ss_pred CCcHHHHHHHHH-----HHh-----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence 245444443211 011 6899998875 888866 6799999999875
No 248
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.33 E-value=4.7e-13 Score=113.22 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=39.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~p~~G~i~~~g~~~ 86 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAG-----IYPPDSGTVTVRGRVS 86 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEEc
Confidence 4578999999999999999999999999 888999999 788876
No 249
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=9.2e-13 Score=112.96 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=38.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE--cC---CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII--NA---DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii--~~---dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| +. .+ ++|+| ++|.++.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~p~~~~~G~i~~~g~~~~ 75 (252)
T PRK14239 25 SLDFYPNEITALIGPSGSGKSTLLRSINR-----MNDLNPEVTITGSIVYNGHNIY 75 (252)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhc-----ccccCCCCCccceEEECCEECc
Confidence 34567899999999999999999999999 53 34 58999 8998884
No 250
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.1e-12 Score=110.70 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=39.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++. +++|+| ++|.++.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNR-----MNDDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhh-----ccccccCCCcceEEEECCEEcc
Confidence 34568899999999999999999999999 654 479999 8998874
No 251
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.33 E-value=1.1e-12 Score=122.48 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=52.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVS 78 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~ 78 (236)
+....+|++++|+|.|||||||++++|.+.++... ...+|.| |+|.|+ ...+..++..+...-++++.
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl--~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDL--LGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcch--hcCCHHHHHHhccccEEEEe
Confidence 34568899999999999999999999999444322 2347888 899998 67777777766666666663
No 252
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=8.5e-13 Score=114.47 Aligned_cols=45 Identities=29% Similarity=0.559 Sum_probs=39.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| ++. +++|+| ++|.++.
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNR-----MNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----ccCccCCCCcceEEEECCEEcc
Confidence 34568899999999999999999999999 654 589999 8998884
No 253
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.2e-12 Score=110.64 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=38.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC--CCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA--DSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~--dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|+|..+ .+++ ++|+| ++|.++..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND--LIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc--ccCCCCCceEEEECCEeccc
Confidence 34568899999999999999999999998211 1233 58999 89998843
No 254
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=6.1e-13 Score=125.13 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=91.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-CCCCce-ecCeecccCCCChhhhcCCceeeccccCcc-----
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-ADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----- 80 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----- 80 (236)
+...++|++++|+||||||||||+++|++ ++. +++|+| ++|.++..... ...... .++++...
T Consensus 282 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-----l~~~~~~G~i~~~g~~~~~~~~-~~~~~~----~i~~v~q~~~~~~ 351 (506)
T PRK13549 282 SFSLRRGEILGIAGLVGAGRTELVQCLFG-----AYPGRWEGEIFIDGKPVKIRNP-QQAIAQ----GIAMVPEDRKRDG 351 (506)
T ss_pred eeEEcCCcEEEEeCCCCCCHHHHHHHHhC-----CCCCCCCcEEEECCEECCCCCH-HHHHHC----CCEEeCcchhhCC
Confidence 44678999999999999999999999999 777 599999 78988842211 111111 12333221
Q ss_pred --cccChhHHHHHHHHHHHHHhhCCCceEEec-hHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccch
Q 048453 81 --VEFTAKEFRDSAVPLISEILSRDHIPFIVG-GTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNT 157 (236)
Q Consensus 81 --~~~s~~~~~~~~~~~i~~~~~~~~~~il~G-G~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~ 157 (236)
..+++.++.... ..... . . ...... .....+..++..+-+. .....+.+.++|+||+|
T Consensus 352 ~~~~~tv~e~l~~~--~~~~~-~-~-~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgG~kq----------- 412 (506)
T PRK13549 352 IVPVMGVGKNITLA--ALDRF-T-G-GSRIDDAAELKTILESIQRLKVK---TASPELAIARLSGGNQQ----------- 412 (506)
T ss_pred CcCCCCHHHHhhhh--hhhhh-c-c-CcccChHHHHHHHHHHHHhcCcc---CCCcccccccCCHHHHH-----------
Confidence 123433332110 00000 0 0 000000 0112234444443221 01123346788888877
Q ss_pred hhhhhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 158 VLYRLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++...........+.-+|++++. +|+..++.+.+.|..+...|.+
T Consensus 413 -----------------rv~lA~al~~~p~lllLDEPt~~-LD~~~~~~l~~~l~~l~~~g~t 457 (506)
T PRK13549 413 -----------------KAVLAKCLLLNPKILILDEPTRG-IDVGAKYEIYKLINQLVQQGVA 457 (506)
T ss_pred -----------------HHHHHHHHhhCCCEEEEcCCCCC-cCHhHHHHHHHHHHHHHHCCCE
Confidence 33333333345567777888877 7888888877777776655654
No 255
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.32 E-value=2.9e-12 Score=121.91 Aligned_cols=121 Identities=20% Similarity=0.328 Sum_probs=79.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~~ 80 (236)
...++|+.++|+|+||||||||++.|+| ++.+++|+| ++|.++ ...+..++... ++.+-+.+..+
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~g-----l~~~~~G~I~i~g~~i--~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPR-----FYEPDSGQILLDGHDL--ADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHh-----ccCCCCCeEEECCEeH--HhcCHHHHHhhceEEccCcccccccHHHH
Confidence 3568899999999999999999999999 999999999 799998 44554444321 22233332111
Q ss_pred c------ccChhHHHHHH-----HHHHHHHhhCCCc------eEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 V------EFTAKEFRDSA-----VPLISEILSRDHI------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 ~------~~s~~~~~~~~-----~~~i~~~~~~~~~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
- .++..+....+ .+.+.++...-.. ..++||+.+++ |+++.+ +++|||++++|..+
T Consensus 426 i~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred HhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 0 22222222211 1222222111112 24799999986 999976 67999999999764
No 256
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.32 E-value=7.2e-13 Score=124.81 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G-----l~~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 283 SLEVRAGEILGLAGVVGAGRTELAETLYG-----LRPARGGRIMLNGKEIN 328 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcC-----CCCCCCcEEEECCEECC
Confidence 34568899999999999999999999999 888999999 7898884
No 257
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.32 E-value=2.3e-12 Score=123.04 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=75.8
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|+| +++|++|+| ++|.++. ..+...+.... +.+-+.+..+
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g-----~~~p~~G~I~i~g~~i~--~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTR-----AWDPQQGEILLNGQPIA--DYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCEEhh--hCCHHHHHhheeEEcccchhhcccHHHH
Confidence 3568999999999999999999999999 899999999 8999983 44444433211 1111222111
Q ss_pred cc-----cChhHHHHHHHH-HHHHHhhC---C------CceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 VE-----FTAKEFRDSAVP-LISEILSR---D------HIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 ~~-----~s~~~~~~~~~~-~i~~~~~~---~------~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
-. .+..+....+.. .+.+.... . ...-++||+.+++ |+++.+ +++||+++++|..+
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t 510 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11 111111111100 01111111 1 1224789999986 999976 67999999999763
No 258
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.32 E-value=9.3e-13 Score=112.21 Aligned_cols=44 Identities=34% Similarity=0.514 Sum_probs=40.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|++ .+++++|+| ++|.++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----~~~~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAG-----LEQPDSGRIRLNGQDAT 65 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEEcC
Confidence 4578999999999999999999999999 788999999 8998884
No 259
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.32 E-value=4.2e-12 Score=106.73 Aligned_cols=45 Identities=31% Similarity=0.446 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
....++|++++|+||||||||||+++|++ +..+++|.| ++|.++.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~~ 69 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFR-----LVELSSGSILIDGVDIS 69 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHc-----CCCCCCCEEEECCEEhH
Confidence 34568899999999999999999999999 888999999 8898873
No 260
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.32 E-value=8e-12 Score=107.93 Aligned_cols=45 Identities=31% Similarity=0.571 Sum_probs=38.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC---CCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD---SMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d---sg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|+| ++.++ +|+| ++|.++.
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSG-----LITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhc-----cCCCCCCCceEEEECCEecc
Confidence 34568899999999999999999999999 77765 4888 8998874
No 261
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.32 E-value=9.8e-13 Score=123.28 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=40.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +..+++|+| ++|.++.
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFG-----IREKSAGTITLHGKKIN 313 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcC-----CCcCCccEEEECCEECC
Confidence 34578999999999999999999999999 888999999 7898884
No 262
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.1e-12 Score=123.21 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=40.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G-----~~~p~~G~i~~~g~~~~ 318 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYG-----ATRRTAGQVYLDGKPID 318 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcC-----CCcCCCceEEECCEECC
Confidence 34568899999999999999999999999 788999999 7898874
No 263
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=106.97 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=38.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
+....+|++++|+|+||||||||+++|++ ++.+ ++|+| ++|.++.
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G-----l~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNR-----ISELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----hcCcccCCccceEEEECCEecc
Confidence 44568899999999999999999999999 5553 58998 8998874
No 264
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.31 E-value=5.5e-13 Score=112.66 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=37.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.++|++++|+||||||||||+++|++ +..+++|+| ++|.++
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~g~~~ 44 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILG-----LIPPAKGTVKVAGASP 44 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCccc
Confidence 56899999999999999999999999 889999999 888775
No 265
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=106.37 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=38.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC-----CCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD-----SMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d-----sg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.++ +|.| ++|.++.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 24 NMDFPERQITAIIGPSGCGKSTLLRALNR-----MNDIVSGARLEGAVLLDNENIY 74 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccCccccCCcccEEEECCEEcc
Confidence 34567899999999999999999999999 66666 6888 7898874
No 266
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=108.57 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=38.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| +.. +++|.| ++|.++.
T Consensus 60 l~i~~Ge~~~l~G~nGsGKSTLl~~L~G-----l~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 60 ADILSKYVTAIIGPSGCGKSTFLRAINR-----MNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccccCCCCCCceEEEECCEEhh
Confidence 4568899999999999999999999999 543 489999 8998874
No 267
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.31 E-value=1e-12 Score=113.01 Aligned_cols=45 Identities=27% Similarity=0.385 Sum_probs=39.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~----dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.+ ++|.| ++|.++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALG-----ILPAGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCCcCCEEEECCeecc
Confidence 44578999999999999999999999999 7777 99999 7898873
No 268
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.31 E-value=4.1e-12 Score=121.04 Aligned_cols=121 Identities=23% Similarity=0.377 Sum_probs=76.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~ 79 (236)
....++|+.++|+|+||||||||++.|+| ++.+++|+| ++|.++ .+.+...+... ++.+-+.+..
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~g-----l~~p~~G~I~i~g~~i--~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLR-----FYDPQSGRILLDGVDL--RQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHh-----ccCCCCCEEEECCEEH--HhcCHHHHHHhceEEccCCccccccHHH
Confidence 34578999999999999999999999999 899999999 899998 34444433221 1122222211
Q ss_pred c-----cccChhHHHHHH-----HHHHHHHhhCCCc------eEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 80 N-----VEFTAKEFRDSA-----VPLISEILSRDHI------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 80 ~-----~~~s~~~~~~~~-----~~~i~~~~~~~~~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+ ...+..+....+ .+.+..+...... ..++||+.+++ |+++++ +++|||++++|..
T Consensus 433 Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~ 510 (576)
T TIGR02204 433 NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510 (576)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHH
Confidence 1 111211111111 1122222111122 23789999885 999966 6799999999876
No 269
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=4.6e-12 Score=102.06 Aligned_cols=122 Identities=25% Similarity=0.393 Sum_probs=83.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
....++|+.++|+||||||||||+-.+|+ +-.+++|+| +.|.++ .+...+.++.++...++++.+. .+
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAG-----Ld~~ssGeV~l~G~~L--~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAG-----LDDPSSGEVRLLGQPL--HKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhc-----CCCCCCceEEEcCcch--hhcCHHHHHHhhccceeEEEEeeecccc
Confidence 34578899999999999999999999999 999999999 789998 6677777776654444444221 11
Q ss_pred cCh---------------hHHHHHHHHHHHHHhhC---CCce-EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 83 FTA---------------KEFRDSAVPLISEILSR---DHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 83 ~s~---------------~~~~~~~~~~i~~~~~~---~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+++ .+-...+...++..-.. ..+| -++||..+++ ||+.-. ++.|||+-++|..+
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T 181 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH
Confidence 111 12222233334332111 2234 4799999986 888744 56799999998764
No 270
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.31 E-value=1.6e-12 Score=122.08 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=39.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC--CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA--DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~--dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ ++.+ ++|+| ++|.++.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G-----~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSG-----VYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCCCeEEEECCEECC
Confidence 44568899999999999999999999999 6665 79999 8999884
No 271
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.31 E-value=2.1e-12 Score=121.24 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=39.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ ++.| ++|.| ++|.++.
T Consensus 280 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G-----~~~p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 280 SFSLRRGEILGVAGLVGAGRTELVQALFG-----AYPGKFEGNVFINGKPVD 326 (500)
T ss_pred eeEEeCCcEEEEeCCCCCCHHHHHHHHhC-----CCCCCCCeEEEECCEECC
Confidence 44578899999999999999999999999 7774 89999 7898884
No 272
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=107.91 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=38.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ ++. +++|+| ++|.++.
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNR-----MNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccccccCCCcCceEEECCEecc
Confidence 34568899999999999999999999999 543 268998 8998874
No 273
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=9.3e-13 Score=113.02 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=38.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| +.. +++|.| ++|.++.
T Consensus 25 s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G-----~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 25 NLDIYKREVTAFIGPSGCGKSTFLRCFNR-----MNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----hcccCCCCCcceEEEECCEehH
Confidence 34567899999999999999999999999 654 479999 8898874
No 274
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.30 E-value=4e-12 Score=100.51 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=61.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+...++|++++|+||||||||||+++|++ +.++++|+| ++|.. .+.++..
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G-----~~~~~~G~i~~~~~~-----------------~i~~~~~------- 70 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAG-----ELEPDEGIVTWGSTV-----------------KIGYFEQ------- 70 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcC-----CCCCCceEEEECCeE-----------------EEEEEcc-------
Confidence 34568899999999999999999999999 888999999 66531 1222221
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+++|+.+.+ ++++.+ +++|||++++|..
T Consensus 71 ---------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 71 ---------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred ---------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 788887764 888866 6799999999875
No 275
>PRK13409 putative ATPase RIL; Provisional
Probab=99.30 E-value=2.4e-13 Score=130.06 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=33.9
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
..++|++++|+||||||||||+++|+| ++.|++|.|
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G-----~l~p~~G~i 130 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSG-----ELIPNLGDY 130 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC-----CccCCCccc
Confidence 468899999999999999999999999 889999998
No 276
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=106.72 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=38.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC-----CCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD-----SMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d-----sg~i-~~g~dI~ 57 (236)
+...++|++++|+|+||||||||+++|++ +.+++ +|+| ++|.++.
T Consensus 27 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~G-----l~~~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNR-----MNELESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc-----ccCCCCCccccceEEECCEEhh
Confidence 45678999999999999999999999999 66664 7888 7888873
No 277
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.5e-12 Score=119.89 Aligned_cols=122 Identities=23% Similarity=0.359 Sum_probs=77.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhc----CC---ceeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQK----GV---PHHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~----~~---~~~li~~v~~ 79 (236)
++..++|+.++|+|+||||||||+..|+| +.++++|.| .+|.+... .+.+... .+ ||.+-+++.-
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G-----~~~~~~G~I~vng~~l~~--l~~~~~~k~i~~v~Q~p~lf~gTire 413 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLG-----FLAPTQGEIRVNGIDLRD--LSPEAWRKQISWVSQNPYLFAGTIRE 413 (559)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhC-----cCCCCCceEEECCccccc--cCHHHHHhHeeeeCCCCccccccHHH
Confidence 55678999999999999999999999999 999999999 89998843 3322222 22 2333333322
Q ss_pred ccc-----cChhHHHHHHHH-HHHHHhhC---CCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 NVE-----FTAKEFRDSAVP-LISEILSR---DHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~~~-----~s~~~~~~~~~~-~i~~~~~~---~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
|-. .+..+....+.+ -+.+.... .+.. -++||+.+++ ||++.+ +++|||++++|.++
T Consensus 414 Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 111 111111111100 11112221 1112 3789999986 999977 68999999999874
No 278
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.30 E-value=4e-12 Score=120.71 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=75.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccc-c--
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVE-F-- 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~-~-- 83 (236)
+...++|+.++|+||||||||||++.|+| +++|++|.| ++|.++. ..+..++... ++++.++.. |
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g-----~~~~~~G~i~~~g~~~~--~~~~~~~~~~----i~~v~q~~~lf~~ 411 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTG-----LYQPQSGEILLDGKPVT--AEQPEDYRKL----FSAVFTDFHLFDQ 411 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCEECC--CCCHHHHhhh----eEEEecChhHHHH
Confidence 34568999999999999999999999999 889999999 8999984 3333333321 222211110 0
Q ss_pred Ch----hHHH-HHHHHHHHHHhhC-----C-C---ceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 84 TA----KEFR-DSAVPLISEILSR-----D-H---IPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 84 s~----~~~~-~~~~~~i~~~~~~-----~-~---~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+. .... +...+.++..... + . ..-++||+.+++ |+++.+ +++|||++++|..+
T Consensus 412 ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~ 484 (547)
T PRK10522 412 LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHF 484 (547)
T ss_pred hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 00 0011 1122223221100 0 0 124789999985 999976 67999999999764
No 279
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.5e-11 Score=106.42 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=38.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +.. +++|+| ++|.++.
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~i~ 80 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTILRCFNR-----LNDLIPGFRVEGKVTFHGKNLY 80 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHh-----hhcccCCCCCceEEEECCEEcc
Confidence 44568899999999999999999999999 543 478999 7898874
No 280
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.29 E-value=9.9e-13 Score=110.69 Aligned_cols=43 Identities=26% Similarity=0.496 Sum_probs=39.4
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...+|++++|+||||||||||+++|++ ++++++|+| ++|.++.
T Consensus 27 ~i~~G~~~~I~G~nGsGKStLl~~l~G-----~~~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGG-----LRSVQEGSLKVLGQELY 70 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCEEhH
Confidence 467899999999999999999999999 888999999 7898884
No 281
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=4e-12 Score=126.98 Aligned_cols=116 Identities=28% Similarity=0.400 Sum_probs=79.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc--------
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN-------- 80 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~-------- 80 (236)
..++|+.++|+|||||||||++..|.+ ++.|++|+| .+|.||. .....+++.. ++.|.+.
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~R-----fydP~~G~V~idG~di~--~~~~~~lr~~----iglV~QePvlF~~tI 443 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLAR-----FYDPTSGEVLIDGEDIR--NLNLKWLRSQ----IGLVSQEPVLFATTI 443 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHH-----hcCCCCceEEEcCccch--hcchHHHHhh----cCeeeechhhhcccH
Confidence 468899999999999999999999999 999999999 7999994 4444444432 3333211
Q ss_pred --------cccChhHHHHH-----HHHHHHHHhhCC------CceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 --------VEFTAKEFRDS-----AVPLISEILSRD------HIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 --------~~~s~~~~~~~-----~~~~i~~~~~~~------~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+.-+..+..+. +.+.|..+.... +.+.++||+.+++ ||++++ +++||++++||..
T Consensus 444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~ 523 (1228)
T KOG0055|consen 444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 523 (1228)
T ss_pred HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH
Confidence 11122222221 233444433222 2234899999996 999977 7899999999975
Q ss_pred h
Q 048453 136 C 136 (236)
Q Consensus 136 ~ 136 (236)
.
T Consensus 524 s 524 (1228)
T KOG0055|consen 524 S 524 (1228)
T ss_pred H
Confidence 3
No 282
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.29 E-value=4.3e-12 Score=107.09 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=40.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|.| ++|.++.
T Consensus 34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~~~g~~~~ 79 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLEN-----FYQPQGGQVLLDGKPIS 79 (226)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CcCCCCcEEEECCCchH
Confidence 34578999999999999999999999999 889999999 7888874
No 283
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.4e-12 Score=111.76 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=38.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| +.. +++|+| ++|.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTFIRTLNR-----MNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----hhccCCCCCCccEEEECCEEcc
Confidence 34568899999999999999999999999 442 489999 8998874
No 284
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.29 E-value=5.4e-12 Score=101.97 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=66.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~ 83 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| +++.. .++++.++. ..
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----~~~~~~G~i~~~~~~-----------------~i~~~~q~~~~~~~ 78 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAG-----LWPWGSGRIGMPEGE-----------------DLLFLPQRPYLPLG 78 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCCc-----------------eEEEECCCCccccc
Confidence 45578999999999999999999999999 888999998 55420 122222221 12
Q ss_pred ChhHHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 84 TAKEFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++.+.. .......++||+.+++ ++++.+ +++|||++++|..
T Consensus 79 tv~~nl-----------~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 79 TLREQL-----------IYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred cHHHHh-----------hccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 222221 1113346899998875 888866 6799999999875
No 285
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.8e-11 Score=106.51 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=39.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|+| +++ +++|+| ++|.++.
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laG-----l~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNR-----MNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh-----cCCCccCCCCceEEEECCEECc
Confidence 34568999999999999999999999999 655 489999 8999884
No 286
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.29 E-value=5.5e-12 Score=120.28 Aligned_cols=121 Identities=24% Similarity=0.325 Sum_probs=76.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|+| ++.|++|+| ++|.++.. .+..++... ++.+-+.+..+
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g-----~~~p~~G~i~~~g~~~~~--~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQR-----HFDVSEGDIRFHDIPLTK--LQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCCCEEEECCEEHhh--CCHHHHHhheEEEccCCeeccccHHHH
Confidence 4568999999999999999999999999 889999999 89999843 333332211 12222222111
Q ss_pred -----cccChhHHHHHH-----HHHHHHHhhCCC------ceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 -----VEFTAKEFRDSA-----VPLISEILSRDH------IPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 -----~~~s~~~~~~~~-----~~~i~~~~~~~~------~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
..++..+....+ .+.+..+..... ..-++||+.+++ |+++.+ +++|||++++|...
T Consensus 409 i~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 112222221111 111222111111 124799999985 999976 67999999999874
No 287
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.29 E-value=9.9e-12 Score=117.91 Aligned_cols=120 Identities=26% Similarity=0.327 Sum_probs=75.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC----c---eeeccccCc-
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV----P---HHLLGTVSP- 79 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~----~---~~li~~v~~- 79 (236)
...++|+.++|+||||||||||++.|+| .++|++|.| ++|.++.. .+..++... + +.+-+.+..
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~i~~~g~~i~~--~~~~~~~~~i~~v~q~~~lf~~ti~~N 411 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVG-----IWPPTSGSVRLDGADLKQ--WDRETFGKHIGYLPQDVELFPGTVAEN 411 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEehhh--CCHHHHhhheEEecCCcccccccHHHH
Confidence 3568999999999999999999999999 889999999 89999843 333332211 1 111111110
Q ss_pred ----ccccChhHHHHH-----HHHHHHHHhhCCC------ceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 80 ----NVEFTAKEFRDS-----AVPLISEILSRDH------IPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 80 ----~~~~s~~~~~~~-----~~~~i~~~~~~~~------~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
...++..+.... +.+.++.+..... .--++||+.+++ |+++.+ +++|||++++|..
T Consensus 412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence 111222222211 1122332211111 224799999986 999976 7799999999976
No 288
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.4e-11 Score=104.20 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=38.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc--C---CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN--A---DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~--~---dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +.. + ++|+| ++|.++.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYLRTLNR-----MNDLIPGVTITGNVSLRGQNIY 75 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----ccccCCCCCcccEEEEcCEEcc
Confidence 34567899999999999999999999999 543 3 58999 8998884
No 289
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.28 E-value=4.9e-12 Score=121.02 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=75.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc-------eeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP-------HHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~-------~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|+| +.++++|.| ++|.++. ..+...+.... +.+-+.+..+
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g-----~~~~~~G~i~~~g~~~~--~~~~~~~~~~i~~v~q~~~lf~~ti~~N 428 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQR-----VYDPTVGQILIDGIDIN--TVTRESLRKSIATVFQDAGLFNRSIREN 428 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcc-----CCCCCCCEEEECCEEhh--hCCHHHHHhheEEEccCCccCcccHHHH
Confidence 4568999999999999999999999999 889999999 8999884 33333332211 1111111100
Q ss_pred -----cccChhHHHHHH-----HHHHHHHhhC------CCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 -----VEFTAKEFRDSA-----VPLISEILSR------DHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 -----~~~s~~~~~~~~-----~~~i~~~~~~------~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
...+..+....+ .+.+.++... ...-.++||+.+++ |+++.+ +++|||++++|..+
T Consensus 429 i~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 112222222111 1122222111 11224799999985 999976 67999999999864
No 290
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.28 E-value=1.4e-12 Score=112.58 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
..+|++++|+||||||||||+++|++ ++.+++|+|
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~G-----l~~p~~G~I 57 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAG-----KLKPNLGKF 57 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC-----CcCCCCceE
Confidence 57899999999999999999999999 899999998
No 291
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.9e-11 Score=108.07 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=38.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-----CCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-----ADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-----~dsg~i-~~g~dI~ 57 (236)
....+|++++|+||||||||||+++|+| ++. +++|.| ++|.++.
T Consensus 66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~G-----l~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 66 MDIPEKSVTALIGPSGCGKSTFLRCLNR-----MNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----cccccCCCCCceEEEECCEEcc
Confidence 3467899999999999999999999999 654 689999 7898874
No 292
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.3e-12 Score=110.69 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=38.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc--C---CCCce-ecCeeccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN--A---DSMQV-YQGLDVLT 58 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~--~---dsg~i-~~g~dI~t 58 (236)
....+|++++|+||||||||||+++|++ ++. + ++|.| ++|.++.+
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNR-----MNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhc-----cccCCCCCCcceEEEECCEEccc
Confidence 4568899999999999999999999999 543 2 58998 89998843
No 293
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=4.9e-12 Score=105.18 Aligned_cols=55 Identities=27% Similarity=0.466 Sum_probs=48.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV 69 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~ 69 (236)
...+.+|+++.|+|.||||||||+++|+| -+.+|+|+| .+|.|| .+.+...++..
T Consensus 26 sL~I~~g~FvtViGsNGAGKSTlln~iaG-----~l~~t~G~I~Idg~dV--tk~~~~~RA~~ 81 (263)
T COG1101 26 SLEIAEGDFVTVIGSNGAGKSTLLNAIAG-----DLKPTSGQILIDGVDV--TKKSVAKRANL 81 (263)
T ss_pred ceeecCCceEEEEcCCCccHHHHHHHhhC-----ccccCCceEEECceec--ccCCHHHHhhH
Confidence 44578999999999999999999999999 899999999 899999 56666666643
No 294
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.28 E-value=6e-12 Score=119.72 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=76.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC----c---eeeccccCc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV----P---HHLLGTVSP 79 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~----~---~~li~~v~~ 79 (236)
+...++|++++|+||||||||||++.|++ ++.|++|.| ++|.++. ..+..++... + +.+-+.+..
T Consensus 362 s~~i~~G~~~aivG~sGsGKSTl~~ll~g-----~~~p~~G~i~~~g~~i~--~~~~~~~~~~i~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCG-----LYIPQEGEILLDGAAVS--ADSRDDYRDLFSAIFADFHLFDDLIGP 434 (555)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEECC--CCCHHHHHhhCcEEccChhhhhhhhhc
Confidence 34568999999999999999999999999 899999999 8999984 3443333221 1 111122211
Q ss_pred ccccChhHHHHHHHHHHHHHhh--------CC-C-ceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 80 NVEFTAKEFRDSAVPLISEILS--------RD-H-IPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~--------~~-~-~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+ .....-.+...+.++..-. .| + ..-++||+.+++ |+++.+ +++||+++++|..+
T Consensus 435 n--~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~ 505 (555)
T TIGR01194 435 D--EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF 505 (555)
T ss_pred c--cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 1 1000001111222222110 01 0 124899999985 999977 78999999999874
No 295
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.27 E-value=2.6e-12 Score=123.82 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=38.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| +.|.++
T Consensus 36 s~~v~~Ge~~~lvG~nGsGKSTLl~~l~G-----ll~p~~G~i~~~g~~~ 80 (623)
T PRK10261 36 SFSLQRGETLAIVGESGSGKSVTALALMR-----LLEQAGGLVQCDKMLL 80 (623)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHc-----CCCCCCeEEEECCEEe
Confidence 34567899999999999999999999999 888899998 788755
No 296
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=9.6e-12 Score=99.27 Aligned_cols=89 Identities=28% Similarity=0.538 Sum_probs=64.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+....+|++++|+|+||||||||+++|++ ++.+++|++ ++|.++.. ....+... .+.++..
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g-----~~~~~~G~i~~~~~~~~~--~~~~~~~~----~i~~~~q------- 80 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAG-----LLKPTSGEILIDGKDIAK--LPLEELRR----RIGYVPQ------- 80 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCccEEEECCEEccc--CCHHHHHh----ceEEEee-------
Confidence 34568899999999999999999999999 778899999 78887732 11111111 0122211
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++||+.+.+ ++++.+ +++|||+.++|..
T Consensus 81 ---------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 81 ---------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred ---------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 788887764 777755 6789999999875
No 297
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.27 E-value=1.8e-12 Score=100.66 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=69.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
....++|++++|+|+||||||||+++|++ ...+++|.| ++|.++.. .+.........++.........+++.
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g-----~~~~~~G~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAG-----LLPPDSGSILINGKDISD--IDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTT-----SSHESEEEEEETTEEGTT--SHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred EEEEcCCCEEEEEccCCCccccceeeecc-----cccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 34567899999999999999999999999 888899999 89999843 22222222211111111111223333
Q ss_pred HHH--HHHHHHHHHHh--h--CCCc----eEEechHHHHH---HHHhcC---CCCCCCCc
Q 048453 87 EFR--DSAVPLISEIL--S--RDHI----PFIVGGTNYYI---QALVSP---FLLDDSAE 130 (236)
Q Consensus 87 ~~~--~~~~~~i~~~~--~--~~~~----~il~GG~~~~i---rall~~---~l~d~~~~ 130 (236)
++. ..+...+..+. . .... -.++||+.+.+ ++++.+ +++|||+.
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 321 12222332221 1 1111 35789998875 888866 56788863
No 298
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.27 E-value=5.7e-12 Score=130.98 Aligned_cols=122 Identities=22% Similarity=0.368 Sum_probs=79.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC------------------------------------------
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA------------------------------------------ 45 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~------------------------------------------ 45 (236)
....++|+.++|+||||||||||++.|.+ ++.|
T Consensus 1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r-----~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 (1466)
T PTZ00265 1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMR-----FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTK 1262 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHH-----hCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 34578999999999999999999999999 5554
Q ss_pred ------------CCCce-ecCeecccCCCChhhhcCC-------ceeeccccCcc-----cccChhHHHHH-----HHHH
Q 048453 46 ------------DSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSPN-----VEFTAKEFRDS-----AVPL 95 (236)
Q Consensus 46 ------------dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~~-----~~~s~~~~~~~-----~~~~ 95 (236)
++|+| ++|.|| ...+...++.. ++.|-+++.-+ ...+..+.... +.+.
T Consensus 1263 ~~~~~~~~~~~~~~G~I~idG~di--~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1263 EGGSGEDSTVFKNSGKILLDGVDI--CDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred ccccccccccCCCCCeEEECCEEH--HhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 69999 899999 44555544322 12222222111 11222222211 1233
Q ss_pred HHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 96 ISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 96 i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
|..+....... -++||+.|++ ||++.+ +++||+++++|..+
T Consensus 1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 44433322222 3789999996 999977 78999999999764
No 299
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.8e-12 Score=109.81 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=38.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +..+ ++|+| ++|.++.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 23 NLPIPARQVTALIGPSGCGKSTLLRCLNR-----MNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHh-----hcccccCCCCceEEEECCEEcc
Confidence 34578999999999999999999999999 6554 68998 7898873
No 300
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.26 E-value=3.1e-12 Score=108.13 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=41.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++++||||+||||.+|+|.+ ++++++|.| ++|.++.
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmILg-----lle~~~G~I~~~g~~~~ 67 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMILG-----LLEPTEGEITWNGGPLS 67 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHhc-----cCCccCceEEEcCcchh
Confidence 45678999999999999999999999999 999999999 9998874
No 301
>PLN03232 ABC transporter C family member; Provisional
Probab=99.26 E-value=1e-11 Score=129.70 Aligned_cols=121 Identities=23% Similarity=0.310 Sum_probs=80.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeecccc---
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTV--- 77 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v--- 77 (236)
...++|+.++|+|+||||||||++.|.+ ++.+++|+| ++|.|| .+.+..+++.. ++.+-+++
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~r-----l~~p~~G~I~IdG~di--~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFR-----IVELEKGRIMIDDCDV--AKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCcCCCceEEECCEEh--hhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 3568999999999999999999999999 999999999 899999 45555544321 12233332
Q ss_pred -CcccccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 78 -SPNVEFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 78 -~~~~~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
++...++..+..+.+ .+.+..+....... -++||+.|++ ||++++ +++||+++++|.++
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 222223323222211 12233222212222 3789999985 999977 77999999999875
No 302
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.26 E-value=1.8e-12 Score=122.28 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=35.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE--cCCCCce-ec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII--NADSMQV-YQ 52 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii--~~dsg~i-~~ 52 (236)
+....+|++++|+||||||||||+++|++ ++ .+++|+| ++
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~G-----l~~~~p~~G~i~~~ 62 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRG-----MDQYEPTSGRIIYH 62 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cccCCCCceEEEEe
Confidence 34567899999999999999999999999 75 6899998 54
No 303
>PLN03130 ABC transporter C family member; Provisional
Probab=99.26 E-value=1.1e-11 Score=130.07 Aligned_cols=122 Identities=25% Similarity=0.334 Sum_probs=81.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeecccc--
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTV-- 77 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v-- 77 (236)
....++|+.++|+|+||||||||++.|.+ ++.+++|+| ++|.|| .+.+..+++.- ++.|-+++
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~r-----l~~p~~G~I~IDG~dI--~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFR-----IVELERGRILIDGCDI--SKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----cCCCCCceEEECCEec--ccCCHHHHHhccEEECCCCccccccHHH
Confidence 34578999999999999999999999999 999999999 899999 45555555432 12222322
Q ss_pred --CcccccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 78 --SPNVEFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 78 --~~~~~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
++...++-.+..+.+ .+.|..+......+ -++||+.|++ ||++++ +++||+++++|..+
T Consensus 1332 NLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1332 NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred HhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 222223322222211 22333322222222 3789999985 999977 77999999999765
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.26 E-value=7.7e-12 Score=105.07 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=39.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G-----~~~~~~G~i~~~g~~~~ 66 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILG-----EMQTLEGKVHWSNKNES 66 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----cCCCCCCeEEECCcccc
Confidence 34568899999999999999999999999 888999999 7888774
No 305
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.26 E-value=4.6e-12 Score=113.70 Aligned_cols=119 Identities=24% Similarity=0.449 Sum_probs=78.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceee-ccccCcccc----
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHL-LGTVSPNVE---- 82 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~l-i~~v~~~~~---- 82 (236)
..+++|+.++|+|.||||||||.++|.+ +++++ |.| |.|.+| ...+..++.-.++.+ +-|.+|+..
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allr-----L~~s~-G~I~F~G~~i--~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLR-----LIPSQ-GEIRFDGQDI--DGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHh-----hcCcC-ceEEECCccc--cccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 3467899999999999999999999999 88887 777 999999 445555554333221 222233322
Q ss_pred cChhHHH-----------------HHHHHHHHHH----hhCCCceE-EechHHHHH---HHHhcC---CCCCCCCcccch
Q 048453 83 FTAKEFR-----------------DSAVPLISEI----LSRDHIPF-IVGGTNYYI---QALVSP---FLLDDSAEDMDE 134 (236)
Q Consensus 83 ~s~~~~~-----------------~~~~~~i~~~----~~~~~~~i-l~GG~~~~i---rall~~---~l~d~~~~~ld~ 134 (236)
.++.+.. +.+.+++.+. ..+.++|+ ++||+.+++ ||++-. +++|||++++|.
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 2333322 2233333332 12345664 799999986 888844 568999999975
Q ss_pred h
Q 048453 135 S 135 (236)
Q Consensus 135 ~ 135 (236)
.
T Consensus 460 S 460 (534)
T COG4172 460 S 460 (534)
T ss_pred H
Confidence 4
No 306
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.25 E-value=1.5e-11 Score=107.27 Aligned_cols=121 Identities=19% Similarity=0.365 Sum_probs=71.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcC-C---cee---ec----c
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKG-V---PHH---LL----G 75 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~-~---~~~---li----~ 75 (236)
....++|++++|+||||||||||+++|++ ++. ++|+| ++|.++.+ .+..++.. + ++. +- +
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~g-----l~~-~~G~I~i~g~~i~~--~~~~~lr~~i~~v~q~~~lf~~tv~~ 95 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLR-----LLN-TEGDIQIDGVSWNS--VPLQKWRKAFGVIPQKVFIFSGTFRK 95 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhh-----hcC-CCcEEEECCEEhhh--CCHHHHhhhEEEECCCcccchhhHHH
Confidence 34678999999999999999999999999 666 78999 79999843 33333221 1 111 00 0
Q ss_pred ccCcccccChhHHHHHHHHHH--HHHh----hCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 76 TVSPNVEFTAKEFRDSAVPLI--SEIL----SRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 76 ~v~~~~~~s~~~~~~~~~~~i--~~~~----~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
.+.+...++..... .+.+.+ .... ...... .++||+.+.+ ||++.+ +++|||++++|....
T Consensus 96 nl~~~~~~~~~~~~-~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~ 174 (275)
T cd03289 96 NLDPYGKWSDEEIW-KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174 (275)
T ss_pred HhhhccCCCHHHHH-HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 01111111111111 111110 1111 111112 2899998875 999966 679999999997643
No 307
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6.2e-12 Score=112.36 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=39.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++.....--.+++|+| ++|.+|.
T Consensus 102 s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3457889999999999999999999999932110002578999 8999985
No 308
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.25 E-value=1.4e-11 Score=128.78 Aligned_cols=121 Identities=22% Similarity=0.357 Sum_probs=81.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeecccc---
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTV--- 77 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v--- 77 (236)
...++|+.++|+|+||||||||++.|.+ ++.+++|+| ++|.|| .+.+...++.. ++.|-+++
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~r-----l~~~~~G~I~IdG~dI--~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFR-----INESAEGEIIIDGLNI--AKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CccCCCCeEEECCEEc--cccCHHHHHhcCeEECCCCcccCccHHHH
Confidence 3468999999999999999999999999 999999999 899999 55555554422 12233333
Q ss_pred -CcccccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 78 -SPNVEFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 78 -~~~~~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
++...++-.+..+.+ .+.|..+....... -++||+.|++ ||++++ +++||+++++|.++
T Consensus 1380 Ldp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1380 LDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred cCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 222233333322211 12233322222222 3789999986 999977 67999999999875
No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.24 E-value=3.3e-12 Score=110.82 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=37.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL 54 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~ 54 (236)
+....+|++++|+||||||||||+++|+| ++++++|.| ++|.
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~G-----l~~p~~G~I~~~g~ 86 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGG-----SLSPTVGKVDRNGE 86 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CcCCCceEEEECCE
Confidence 44578999999999999999999999999 889999998 6764
No 310
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.24 E-value=1.3e-11 Score=106.40 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=40.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+|+||||||||+++|++ ++++++|+| ++|.++.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~G~i~i~g~~i~ 86 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFR-----MVDIFDGKIVIDGIDIS 86 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHc-----ccCCCCCeEEECCEEhh
Confidence 4568999999999999999999999999 888999999 7998884
No 311
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3.8e-11 Score=104.70 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=38.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI~ 57 (236)
....++|++++|+||||||||||+++|++ ++.+ ++|.| ++|.++.
T Consensus 41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~G-----l~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 41 SMGFPARAVTSLMGPTGSGKTTFLRTLNR-----MNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc-----cCCcCCCCCCceEEEECCEEcc
Confidence 34568999999999999999999999999 6664 79999 8898874
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.24 E-value=2.8e-12 Score=135.32 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=40.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~G-----ll~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTG-----DTTVTSGDATVAGKSIL 2004 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhC-----CCCCCccEEEECCEECc
Confidence 3567899999999999999999999999 899999999 7999984
No 313
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.24 E-value=1.2e-11 Score=106.58 Aligned_cols=113 Identities=21% Similarity=0.363 Sum_probs=67.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe-ecccCCCChhhhcCCceeeccccCcccccCh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL-DVLTNKVSLQDQKGVPHHLLGTVSPNVEFTA 85 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~-dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~ 85 (236)
+....+|++++|+||||||||||+++|++ ++.+++|+| +++. .++-. ..+.. +...+ ..++
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~G-----l~~p~~G~i~~~~~~~i~~v---~q~~~-----~~~~l----~~~~ 86 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLG-----LVAPDEGVIKRNGKLRIGYV---PQKLY-----LDTTL----PLTV 86 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCccCEEEe---ccccc-----ccccc----ChhH
Confidence 34568899999999999999999999999 888999998 5542 11100 00000 00000 0011
Q ss_pred hHHH--------HHHHHHHHHH----hhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 86 KEFR--------DSAVPLISEI----LSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 86 ~~~~--------~~~~~~i~~~----~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
.++. ..+...++.+ ......-.++||+.+.+ ++++.+ +++|||++++|....
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 156 (251)
T PRK09544 87 NRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156 (251)
T ss_pred HHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 1110 1112222221 01122335899998875 888865 679999999997643
No 314
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.24 E-value=2.1e-12 Score=115.21 Aligned_cols=34 Identities=38% Similarity=0.594 Sum_probs=31.7
Q ss_pred EEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 19 IMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 19 IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 1 l~G~nGsGKSTLl~~iaG-----l~~p~~G~I~i~g~~i~ 35 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG-----FEQPDSGSIMLDGEDVT 35 (325)
T ss_pred CcCCCCCCHHHHHHHHHC-----CCCCCceEEEECCEECC
Confidence 689999999999999999 889999999 8999884
No 315
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.23 E-value=1.3e-11 Score=123.32 Aligned_cols=120 Identities=25% Similarity=0.419 Sum_probs=83.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcC-------CceeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKG-------VPHHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~-------~~~~li~~v~~~ 80 (236)
...++|+.++|+|||||||||+...|-+ +++|++|.| .+|.||. +.+...++. -|..|-.++.-+
T Consensus 1011 l~i~~GqTvALVG~SGsGKSTvI~LLeR-----fYdp~~G~V~IDg~dik--~lnl~~LR~~i~lVsQEP~LF~~TIrEN 1083 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLER-----FYDPDAGKVKIDGVDIK--DLNLKWLRKQIGLVSQEPVLFNGTIREN 1083 (1228)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHH-----hcCCCCCeEEECCcccc--cCCHHHHHHhcceeccCchhhcccHHHH
Confidence 3468899999999999999999999999 999999999 7999994 454444432 222232222111
Q ss_pred cc-----cChhHHHHH-----HHHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 81 VE-----FTAKEFRDS-----AVPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 81 ~~-----~s~~~~~~~-----~~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
-. .+..+..+. ++..|..+....++. -++||+.|++ ||++++ +|+||.|++||.+
T Consensus 1084 I~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDse 1160 (1228)
T KOG0055|consen 1084 IAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSE 1160 (1228)
T ss_pred HhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhh
Confidence 11 222222222 344555555444444 3789999996 999977 7899999999975
No 316
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.7e-12 Score=115.94 Aligned_cols=122 Identities=23% Similarity=0.332 Sum_probs=79.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCC--hhh---hcCCceeeccccCccc--
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVS--LQD---QKGVPHHLLGTVSPNV-- 81 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~--~~e---~~~~~~~li~~v~~~~-- 81 (236)
..++|+.++|+|+||||||||+..|++ -+.+++|+| ..|.++...+.. .+. +.+-.|.|.+++..|-
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~-----~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~l 434 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAG-----AWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRL 434 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHh-----ccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhh
Confidence 467899999999999999999999999 889999999 899999433321 111 1233355555553321
Q ss_pred ---ccChhHHHHHH-----HHHHHHHhh------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 82 ---EFTAKEFRDSA-----VPLISEILS------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 82 ---~~s~~~~~~~~-----~~~i~~~~~------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+-|..+..+.. .+.+++..+ .....-++||..+++ |.++++ +++|||++.+|..+
T Consensus 435 A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 435 ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 12222222211 122222211 111234799998885 999987 67999999999875
No 317
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.23 E-value=2.7e-12 Score=104.25 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=39.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+..-.+|.++.|+|.|||||||+++||.- +-.|+.|+| .+|..|.
T Consensus 26 SL~A~~GdVisIIGsSGSGKSTfLRCiN~-----LE~P~~G~I~v~geei~ 71 (256)
T COG4598 26 SLQANAGDVISIIGSSGSGKSTFLRCINF-----LEKPSAGSIRVNGEEIR 71 (256)
T ss_pred eeecCCCCEEEEecCCCCchhHHHHHHHh-----hcCCCCceEEECCeEEE
Confidence 34456899999999999999999999987 889999999 7888774
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.21 E-value=2.2e-12 Score=120.84 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=37.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-CCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-DSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-dsg~i-~~g~dI 56 (236)
+....+|++++|+||||||||||+++|+| +.++ ++|+| ++|.++
T Consensus 280 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G-----~~~~~~~G~i~~~g~~~ 325 (490)
T PRK10938 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITG-----DHPQGYSNDLTLFGRRR 325 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcC-----CCCcccCCeEEEecccC
Confidence 34567899999999999999999999999 5554 68999 788776
No 319
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.21 E-value=6.3e-12 Score=118.88 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=38.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+....+|++++|+||||||||||+++|++ +++ ++|.| ++|.++.
T Consensus 306 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~G-----l~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 306 SFTLRPGETLGLVGESGSGKSTTGLALLR-----LIN-SQGEIWFDGQPLH 350 (529)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhC-----cCC-CCcEEEECCEEcc
Confidence 44578999999999999999999999999 664 89999 7999884
No 320
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1.8e-11 Score=98.55 Aligned_cols=162 Identities=20% Similarity=0.242 Sum_probs=97.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ec--C--eecccCCCChhhhcCCceeeccccCccc---
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQ--G--LDVLTNKVSLQDQKGVPHHLLGTVSPNV--- 81 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~--g--~dI~t~~~~~~e~~~~~~~li~~v~~~~--- 81 (236)
..+.|+++++-||||+|||||+++|-+ -+.+|+|+| .+ | .|+ ....+.+.-.++++.++++++.-
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYa-----NY~~d~G~I~v~H~g~~vdl--~~a~pr~vl~vRr~TiGyVSQFLRvi 105 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYA-----NYLPDEGQILVRHEGEWVDL--VTAEPREVLEVRRTTIGYVSQFLRVI 105 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHh-----ccCCCCceEEEEeCcchhhh--hccChHHHHHHHHhhhHHHHHHHHhc
Confidence 457899999999999999999999998 678899998 32 3 344 33444555556666677664221
Q ss_pred -ccChhHHHHHHHHHHH-HHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhh
Q 048453 82 -EFTAKEFRDSAVPLIS-EILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVL 159 (236)
Q Consensus 82 -~~s~~~~~~~~~~~i~-~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~ 159 (236)
..+ +.+.+. -++++|-.. .-....++.++..+-+++..=.+. ..+.||||+|
T Consensus 106 PRV~-------aLdVvaePll~~gv~~---~~a~~~a~~Ll~rLnlperLW~La---PaTFSGGEqQ------------- 159 (235)
T COG4778 106 PRVS-------ALDVVAEPLLARGVPR---EVARAKAADLLTRLNLPERLWSLA---PATFSGGEQQ------------- 159 (235)
T ss_pred cCcc-------hHHHHHhHHHHcCCCH---HHHHHHHHHHHHHcCCCHHHhcCC---CcccCCchhe-------------
Confidence 111 111222 233332211 011233466666655555555553 3567888888
Q ss_pred hhhhcCCCCCCCcchhHhh-CCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 160 YRLFFAGDEPVGPDSDLAR-DSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
+... .+...=|.. .-+|++.|+ +|..|+.-++..+.-.++.|-.+
T Consensus 160 ---------------RVNIaRgfivd~pI-LLLDEPTas-LDa~Nr~vVveli~e~Ka~GaAl 205 (235)
T COG4778 160 ---------------RVNIARGFIVDYPI-LLLDEPTAS-LDATNRAVVVELIREAKARGAAL 205 (235)
T ss_pred ---------------ehhhhhhhhccCce-EEecCCccc-ccccchHHHHHHHHHHHhcCceE
Confidence 1111 122222333 367888888 88888887777777777666544
No 321
>PTZ00243 ABC transporter; Provisional
Probab=99.21 E-value=2.5e-11 Score=127.06 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=79.6
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeecccc----
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTV---- 77 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v---- 77 (236)
..++|+.++|+|+||||||||++.|.+ ++.+++|+| ++|.|| ...+..+++.. ++.|-+++
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlr-----l~~p~~G~I~IDG~di--~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMR-----MVEVCGGEIRVNGREI--GAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEEc--ccCCHHHHHhcceEECCCCccccccHHHHh
Confidence 467999999999999999999999999 999999999 899999 44555554432 11222222
Q ss_pred CcccccChhHHHHHH-----HHHHHHHhhCCCc------eEEechHHHHH---HHHhc-C---CCCCCCCcccchhhh
Q 048453 78 SPNVEFTAKEFRDSA-----VPLISEILSRDHI------PFIVGGTNYYI---QALVS-P---FLLDDSAEDMDESCF 137 (236)
Q Consensus 78 ~~~~~~s~~~~~~~~-----~~~i~~~~~~~~~------~il~GG~~~~i---rall~-~---~l~d~~~~~ld~~~~ 137 (236)
++...++-.+....+ .+.|..+...... .-++||+.|++ ||+++ + +++||+++++|..+-
T Consensus 1405 dp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1405 DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred CcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 222223333322221 1122222111122 23789999986 99996 3 679999999998753
No 322
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.20 E-value=4.8e-11 Score=112.67 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=36.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ec-Ce
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQ-GL 54 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~-g~ 54 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| ++ |.
T Consensus 304 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G-----l~~p~~G~i~~~~g~ 347 (520)
T TIGR03269 304 SLEVKEGEIFGIVGTSGAGKTTLSKIIAG-----VLEPTSGEVNVRVGD 347 (520)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEEecCC
Confidence 34578999999999999999999999999 888999999 54 53
No 323
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=8.2e-11 Score=101.82 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=36.8
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC-----CCCce-ecCeec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA-----DSMQV-YQGLDV 56 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-----dsg~i-~~g~dI 56 (236)
....+|++++|+|+||||||||+++|++ +..+ ++|+| ++|.++
T Consensus 37 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 37 MMVHEKQVTALIGPSGCGKSTFLRCFNR-----MHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhc-----ccCCCCCCCcccEEEEcCccc
Confidence 4468999999999999999999999999 6553 78998 777765
No 324
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.1e-10 Score=100.86 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=32.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
....+|++++|+||||||||||+++|+| ...+++|+|
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~iaG-----~~~~~~G~v 67 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTLLKVLNR-----LIEIYDSKI 67 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCcCce
Confidence 4567899999999999999999999999 778888665
No 325
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.20 E-value=4.2e-12 Score=134.04 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....+|++++|+||||||||||+++|+| ++.|++|+| ++|.++.
T Consensus 950 sl~I~~Gei~aLLG~NGAGKSTLLkiLaG-----Ll~PtsG~I~i~G~dI~ 995 (2272)
T TIGR01257 950 NITFYENQITAFLGHNGAGKTTTLSILTG-----LLPPTSGTVLVGGKDIE 995 (2272)
T ss_pred EEEEcCCcEEEEECCCCChHHHHHHHHhc-----CCCCCceEEEECCEECc
Confidence 34578899999999999999999999999 889999999 7999984
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=99.19 E-value=1.3e-11 Score=118.14 Aligned_cols=37 Identities=30% Similarity=0.496 Sum_probs=34.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
...+|++++|+||||||||||+++|+| ++.+++|.|+
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~G-----l~~p~~G~I~ 397 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAG-----VLKPDEGEVD 397 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEE
Confidence 357899999999999999999999999 8899999984
No 327
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.19 E-value=1.9e-11 Score=101.60 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=69.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+...++|++++|+||||||||||+++|++ +..+++|+| ++| .|+-....+. . ++....+.+.....++..
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G-----~~~~~~G~i~~~g-~i~~~~q~~~-l--~~~t~~enl~~~~~~~~~ 95 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLG-----ELEKLSGSVSVPG-SIAYVSQEPW-I--QNGTIRENILFGKPFDEE 95 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC-----cCCCCCCeEEEcC-EEEEEecCch-h--ccCcHHHHhccCCCcCHH
Confidence 44578999999999999999999999999 889999999 676 3321110000 0 000111111111111111
Q ss_pred HHHHHHHHH--HHHHhh----------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 87 EFRDSAVPL--ISEILS----------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 87 ~~~~~~~~~--i~~~~~----------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
. ...+... +.+.+. .....-++||+.+++ ++++.+ +++|||++++|...
T Consensus 96 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 96 R-YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred H-HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 1 1111111 111111 112235799998875 888866 67999999998763
No 328
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8e-12 Score=101.84 Aligned_cols=43 Identities=35% Similarity=0.559 Sum_probs=39.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...+|+++.|.||||||||||+|+||| +..|++|+| ++|..|.
T Consensus 24 ~l~~Ge~~~i~G~NG~GKTtLLRilaG-----Ll~p~~G~v~~~~~~i~ 67 (209)
T COG4133 24 TLNAGEALQITGPNGAGKTTLLRILAG-----LLRPDAGEVYWQGEPIQ 67 (209)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHc-----ccCCCCCeEEecCCCCc
Confidence 457899999999999999999999999 999999999 6777773
No 329
>PLN03211 ABC transporter G-25; Provisional
Probab=99.18 E-value=2.9e-11 Score=117.17 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=36.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC--CCce-ecCeec
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD--SMQV-YQGLDV 56 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d--sg~i-~~g~dI 56 (236)
..++|++++|+||||||||||+++|+| ...++ +|+| ++|.++
T Consensus 90 ~i~~Ge~~aI~GpnGaGKSTLL~iLaG-----~~~~~~~sG~I~inG~~~ 134 (659)
T PLN03211 90 MASPGEILAVLGPSGSGKSTLLNALAG-----RIQGNNFTGTILANNRKP 134 (659)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhC-----CCCCCceeEEEEECCEEC
Confidence 467899999999999999999999999 55553 8998 899887
No 330
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.17 E-value=1.1e-11 Score=116.03 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=38.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCee
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~d 55 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|.+
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaG-----Ll~P~sGeI~I~G~~ 87 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAG-----VTMPNKGTVDIKGSA 87 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhC-----CCCCCceEEEECCEe
Confidence 33568899999999999999999999999 889999999 77765
No 331
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.16 E-value=1.5e-10 Score=110.16 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=35.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
+....+|++++|+||||||||||+++|+| ++.+++|.|+
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G-----~~~p~~G~i~ 65 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAG-----VDKEFEGEAR 65 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEE
Confidence 34578899999999999999999999999 8889999983
No 332
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.14 E-value=1.9e-11 Score=118.36 Aligned_cols=46 Identities=33% Similarity=0.371 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+....+|++++|+||||||||||+++|++ +..+++|++ |+|.++..
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G-----l~~~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 28 SLDIYAGEMVAIVGASGSGKSTLMNILGC-----LDKPTSGTYRVAGQDVAT 74 (648)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCeEEEECCEEcCc
Confidence 33578999999999999999999999999 888999999 89999843
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.14 E-value=9e-11 Score=122.19 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=39.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-e-cCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-Y-QGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~-~g~dI~ 57 (236)
....++|++++|+||||||||||+++|++ ++.|++|+| + +|.++.
T Consensus 405 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~g-----l~~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 405 NFTLTEGKTYAFVGESGCGKSTILKLIER-----LYDPTEGDIIINDSHNLK 451 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHH-----hccCCCCeEEEeCCcchh
Confidence 34568999999999999999999999999 999999999 6 468873
No 334
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.13 E-value=5.8e-11 Score=99.76 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=67.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee--cCeecccCCCChhhhcCCceeeccccCcccc---
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY--QGLDVLTNKVSLQDQKGVPHHLLGTVSPNVE--- 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~--~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~--- 82 (236)
....++|++++|+||||||||||+++|++ ++.+++|+|+ ++..+. .. ... .++..+...++
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~G-----l~~~~sG~i~~~~~~~~~---~~--~~~----~l~~~ltv~enl~~ 72 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCG-----LDAPDEGDFIGLRGDALP---LG--ANS----FILPGLTGEENARM 72 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CccCCCCCEEEecCceec---cc--ccc----ccCCcCcHHHHHHH
Confidence 45678899999999999999999999999 8899999984 454331 00 000 01111111111
Q ss_pred ------cChhHHHHHHHHH--HHHHhhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 83 ------FTAKEFRDSAVPL--ISEILSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 83 ------~s~~~~~~~~~~~--i~~~~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
.+...+...+... +... ......-++||+.+.+ ++++.+ +++|||+.++|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 73 MASLYGLDGDEFSHFCYQLTQLEQC-YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHhChhHH-hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 1111111110000 1111 1222335799998874 888866 67999999998753
No 335
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.13 E-value=9.5e-12 Score=105.23 Aligned_cols=159 Identities=21% Similarity=0.141 Sum_probs=95.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK 86 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~ 86 (236)
+-+.++|+-.+|+||||||||||++.+++ ...+.++.+ ..|...++.... .++++- ++++++.-...
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~-----~~~pssg~~~~~G~~~G~~~~~-~elrk~----IG~vS~~L~~~-- 118 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTG-----EHPPSSGDVTLLGRRFGKGETI-FELRKR----IGLVSSELHER-- 118 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhc-----ccCCCCCceeeeeeeccCCcch-HHHHHH----hCccCHHHHhh--
Confidence 34578899999999999999999999999 667778888 788888765554 344332 45554321110
Q ss_pred HHHHHHHHHHHHHhhCCCceEEechH---HHH-------HHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccc
Q 048453 87 EFRDSAVPLISEILSRDHIPFIVGGT---NYY-------IQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLN 156 (236)
Q Consensus 87 ~~~~~~~~~i~~~~~~~~~~il~GG~---~~~-------irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~ 156 (236)
|.. ...+. ..+++|.. +.| ..+.+..++......++.++++..+|.||+|
T Consensus 119 -~~~--~~~v~-------dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r---------- 178 (257)
T COG1119 119 -FRV--RETVR-------DVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR---------- 178 (257)
T ss_pred -ccc--ccccc-------eeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH----------
Confidence 000 00111 12333321 111 0111112233334455667778888888877
Q ss_pred hhhhhhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHh
Q 048453 157 TVLYRLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYART 217 (236)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~t 217 (236)
++-......-..+|.-+|++.+. +|.-.+.++.+.|+-+..+
T Consensus 179 ------------------rvLiaRALv~~P~LLiLDEP~~G-LDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 179 ------------------RVLIARALVKDPELLILDEPAQG-LDLIAREQLLNRLEELAAS 220 (257)
T ss_pred ------------------HHHHHHHHhcCCCEEEecCcccc-CChHHHHHHHHHHHHHhcC
Confidence 22222334455677788888877 8888887888877766655
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.13 E-value=3e-10 Score=107.08 Aligned_cols=44 Identities=36% Similarity=0.449 Sum_probs=37.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee--cCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY--QGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~--~g~dI 56 (236)
.....+|+.++|||+||||||||+++|+| ...+++|.|. .+..|
T Consensus 23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG-----~~~~~~G~i~~~~~~~v 68 (530)
T COG0488 23 SLTLNPGERIGLVGRNGAGKSTLLKILAG-----ELEPDSGEVTRPKGLRV 68 (530)
T ss_pred cceeCCCCEEEEECCCCCCHHHHHHHHcC-----CCcCCCCeEeecCCceE
Confidence 34567899999999999999999999999 7789999882 44455
No 337
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.4e-10 Score=109.68 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=36.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
+....+|++++|+||||||||||+++|+| ++.+++|+| ++|
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G-----l~~p~~G~i~~~~ 62 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGG-----DLEPSAGNVSLDP 62 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEecC
Confidence 34578899999999999999999999999 888999998 554
No 338
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.9e-10 Score=108.85 Aligned_cols=111 Identities=16% Similarity=0.275 Sum_probs=68.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe-ecccCCCChhhhcCCceeeccccCcccccCh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL-DVLTNKVSLQDQKGVPHHLLGTVSPNVEFTA 85 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~-dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~ 85 (236)
+....+|++++|+||||||||||+++|+| +..+++|.| +.|. .|+... . +.. ..+. ..+++
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G-----~~~p~~G~i~~~~~~~i~~~~--q-~~~---~~~~------~~~t~ 401 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVG-----ELEPDSGTVKWSENANIGYYA--Q-DHA---YDFE------NDLTL 401 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCceEEEEEc--c-ccc---ccCC------CCCcH
Confidence 34568899999999999999999999999 888999998 5552 221100 0 000 0000 00111
Q ss_pred hHHH----------HHHHHHHHHH-----hhCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 86 KEFR----------DSAVPLISEI-----LSRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 86 ~~~~----------~~~~~~i~~~-----~~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.++. ..+...+..+ .......-++||+.+++ ++++.+ +++|||++++|..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 402 FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred HHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 1111 1112222221 11223446899998875 888866 6799999999876
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.11 E-value=1.4e-10 Score=121.13 Aligned_cols=121 Identities=22% Similarity=0.374 Sum_probs=77.8
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeecccc---
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTV--- 77 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v--- 77 (236)
...++|+.++|+|+||||||||+++|++ ++. .+|.| ++|.|| ...+...++.- ++.|-+++
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~r-----l~~-~~G~I~IdG~di--~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLR-----LLS-TEGEIQIDGVSW--NSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh-----hcC-CCcEEEECCEEc--ccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 4568999999999999999999999999 665 78999 899999 45555544321 12233333
Q ss_pred -CcccccChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 78 -SPNVEFTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 78 -~~~~~~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
++...++-.+....+ .+.+..+......+ -++||+.|++ ||++.+ +++||+++++|..+-
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te 1389 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL 1389 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 222223322222111 11222221111222 3789999985 999977 779999999998653
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.10 E-value=2.5e-10 Score=110.38 Aligned_cols=123 Identities=17% Similarity=0.343 Sum_probs=69.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCee--cccCCCChhhhcCCce-eeccccCc-cccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLD--VLTNKVSLQDQKGVPH-HLLGTVSP-NVEF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~d--I~t~~~~~~e~~~~~~-~li~~v~~-~~~~ 83 (236)
+....+|++++|+||||||||||+++|++ .+.|++|.|+.|.+ |+.. ......-.++ ...+.+.. ...+
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G-----~~~p~~G~i~~~~~~~i~y~--~q~~~~l~~~~tv~e~l~~~~~~~ 411 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLG-----QLQADSGRIHCGTKLEVAYF--DQHRAELDPEKTVMDNLAEGKQEV 411 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCCcEEEECCCcEEEEE--eCcccccCCCCCHHHHHHhhcccc
Confidence 34578999999999999999999999999 78899999944543 2111 0000000000 00000000 0000
Q ss_pred ChhHHHHHHHHHHHHHh-----hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 84 TAKEFRDSAVPLISEIL-----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~-----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
........+...+..+. .....-.++||..+++ ++++.+ +++|||+.++|....
T Consensus 412 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~ 476 (635)
T PRK11147 412 MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 (635)
T ss_pred cccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 00000111222222211 1222346899998875 888865 679999999997643
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=8.1e-11 Score=113.76 Aligned_cols=42 Identities=31% Similarity=0.388 Sum_probs=37.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL 54 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~ 54 (236)
+....+|++++|+||||||||||+++|+| .+.||+|.| +.|.
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G-----~~~pd~G~I~~~~~ 63 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKN-----EISADGGSYTFPGN 63 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEecCC
Confidence 34578899999999999999999999999 889999999 5553
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.5e-10 Score=111.91 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=69.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ec-CeecccCCCChhhhcCCceeeccccCcccccCh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQ-GLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTA 85 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~-g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~ 85 (236)
+....+|++++|+||||||||||+++|+| .+.|++|.| +. +..|+... ... ...+.+. .++
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G-----~~~p~~G~i~~~~~~~igy~~--Q~~--------~~~l~~~--~~~ 394 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAG-----ELAPVSGEIGLAKGIKLGYFA--QHQ--------LEFLRAD--ESP 394 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCeEEECCCEEEEEec--Ccc--------hhhCCcc--chH
Confidence 34568899999999999999999999999 888999998 43 33332111 000 0000000 011
Q ss_pred hHH---------HHHHHHHHHHHh-----hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhhhcc
Q 048453 86 KEF---------RDSAVPLISEIL-----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCFGS 139 (236)
Q Consensus 86 ~~~---------~~~~~~~i~~~~-----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~~~ 139 (236)
.+. ...+...+..+. .....-.++||..+++ ++++.+ +++|||+.++|......
T Consensus 395 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~ 468 (638)
T PRK10636 395 LQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA 468 (638)
T ss_pred HHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 110 111222222211 1122345899998875 888865 67999999999875433
No 343
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.09 E-value=3.3e-10 Score=107.82 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=35.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
.....+|++++|+||||||||||+++|+| ++.+++|.|+
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G-----~~~p~~G~i~ 63 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAG-----VDKEFNGEAR 63 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEE
Confidence 34578999999999999999999999999 8889999983
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.09 E-value=1.2e-10 Score=112.48 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=36.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
+....+|++++|+||||||||||+++|+| ++.+|+|.| +.+
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG-----~~~p~~G~I~~~~ 64 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNG-----EVLLDDGRIIYEQ 64 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcC-----CCCCCCeEEEeCC
Confidence 34568899999999999999999999999 889999999 554
No 345
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=1.6e-10 Score=117.77 Aligned_cols=120 Identities=26% Similarity=0.465 Sum_probs=88.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcC----Cc---eeecccc----
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKG----VP---HHLLGTV---- 77 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~----~~---~~li~~v---- 77 (236)
..++|+.|+|+|.||||||||+.+|-+ ++.+.+|.| .+|.|| .+....+++. +| -.|.|++
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFR-----l~e~~~G~I~IDgvdI--~~igL~dLRsrlsIIPQdPvLFsGTvR~NL 1234 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFR-----LVEPAEGEILIDGVDI--SKIGLHDLRSRLSIIPQDPVLFSGTVRFNL 1234 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHH-----hcCccCCeEEEcCeec--ccccHHHHHhcCeeeCCCCceecCcccccc
Confidence 368899999999999999999999999 999999999 899999 5666665542 22 3355554
Q ss_pred CcccccChhHHHHH-----HHHHHHHHhhCCCceEEechHHHH---------HHHHhcC---CCCCCCCcccchhh
Q 048453 78 SPNVEFTAKEFRDS-----AVPLISEILSRDHIPFIVGGTNYY---------IQALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 78 ~~~~~~s~~~~~~~-----~~~~i~~~~~~~~~~il~GG~~~~---------irall~~---~l~d~~~~~ld~~~ 136 (236)
+|.++|+-.+..+. ..+.|......-...+..||.++. .||++++ +++||.|.++|.++
T Consensus 1235 DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1235 DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHH
Confidence 66677776655443 233444444444566777776544 3999977 67999999999874
No 346
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=2.7e-10 Score=98.20 Aligned_cols=117 Identities=21% Similarity=0.397 Sum_probs=72.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCC---CChhhhcCCceeeccccCcccccCh
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNK---VSLQDQKGVPHHLLGTVSPNVEFTA 85 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~---~~~~e~~~~~~~li~~v~~~~~~s~ 85 (236)
..+...+++|.|+||||||||+++|+| ++.||.|.| .+|.-+.... .-+.+.+++-+.|-+. ..+..|++
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaG-----L~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA-RLFpH~tV 93 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAG-----LTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA-RLFPHYTV 93 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhc-----cCCccccEEEECCEEeecccCCcccChhhheeeeEeecc-ccccceEE
Confidence 345558999999999999999999999 999999999 7887652211 1122222222211111 01112222
Q ss_pred h-------------HHHHHHHH--HHHHHhhCCCce-EEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 86 K-------------EFRDSAVP--LISEILSRDHIP-FIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 86 ~-------------~~~~~~~~--~i~~~~~~~~~~-il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
. +|- .... -|..++. +.| -++||..+++ ||++.. +++|||.+.+|..
T Consensus 94 rgNL~YG~~~~~~~~fd-~iv~lLGI~hLL~--R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 94 RGNLRYGMWKSMRAQFD-QLVALLGIEHLLD--RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred ecchhhhhcccchHhHH-HHHHHhCcHHHHh--hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 1 111 1111 1223333 344 5899999997 999965 7799999999864
No 347
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.08 E-value=7.7e-11 Score=94.33 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
-+.|+.++++||||+|||||++.|.- +--|++|++ +.|
T Consensus 25 ~~~getlvllgpsgagkssllr~lnl-----le~p~sg~l~ia~ 63 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNL-----LEMPRSGTLNIAG 63 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHH-----HhCCCCCeEEecc
Confidence 46799999999999999999999987 778899987 443
No 348
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.08 E-value=7.3e-11 Score=122.49 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=93.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc---CCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----c
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN---ADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----V 81 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~---~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~ 81 (236)
..++|++++|+||||||||||+++|++ .++ +++|+| ++|.++.. ...+ .++++..+ .
T Consensus 785 ~i~~Ge~~aI~G~sGaGKSTLL~~Lag-----~~~~g~~~~G~I~i~G~~~~~------~~~~----~i~yv~Q~~~~~~ 849 (1394)
T TIGR00956 785 WVKPGTLTALMGASGAGKTTLLNVLAE-----RVTTGVITGGDRLVNGRPLDS------SFQR----SIGYVQQQDLHLP 849 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhC-----CCCCCCcceeEEEECCEECCh------hhhc----ceeeecccccCCC
Confidence 467899999999999999999999999 554 678999 89988731 1111 13444322 2
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCceEEech-HHHHHHHHhcCCCCCCCCcccchhhhc----ccccccccchhhhhcccc
Q 048453 82 EFTAKEFRDSAVPLISEILSRDHIPFIVGG-TNYYIQALVSPFLLDDSAEDMDESCFG----SLSGIKQLFYFTCICTLN 156 (236)
Q Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~~~~il~GG-~~~~irall~~~l~d~~~~~ld~~~~~----~ls~ge~q~~~~~~~~~~ 156 (236)
..++.+..... ..+..... .... ...++..+++.+-+. +..+..+. .+|+||+|
T Consensus 850 ~~Tv~E~L~~~----a~l~~~~~---~~~~~~~~~v~~~l~~l~L~----~~~d~~v~~~~~~LSgGqrq---------- 908 (1394)
T TIGR00956 850 TSTVRESLRFS----AYLRQPKS---VSKSEKMEYVEEVIKLLEME----SYADAVVGVPGEGLNVEQRK---------- 908 (1394)
T ss_pred CCCHHHHHHHH----HHhCCCCC---CCHHHHHHHHHHHHHHcCCh----hhCCCeeCCCCCCCCHHHhh----------
Confidence 23444433221 11110000 0101 122345555443221 11122233 79999998
Q ss_pred hhhhhhhcCCCCCCCcchhHhhCCHHHHHHH-HHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 157 TVLYRLFFAGDEPVGPDSDLARDSSSYSYDL-LKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++...-....... +.-+|++.+. +|+.....+.+.|..+...|++
T Consensus 909 ------------------Rl~Ia~aL~~~P~~iLlLDEPTsg-LD~~~~~~i~~~L~~la~~g~t 954 (1394)
T TIGR00956 909 ------------------RLTIGVELVAKPKLLLFLDEPTSG-LDSQTAWSICKLMRKLADHGQA 954 (1394)
T ss_pred ------------------HHHHHHHHHcCCCeEEEEcCCCCC-CCHHHHHHHHHHHHHHHHcCCE
Confidence 3333222333443 6788999988 9999999999999888666765
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.07 E-value=7.9e-11 Score=113.46 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=92.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC---CCce-ecCeecccCCCChhhhcCCceeeccccCccc--
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD---SMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV-- 81 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d---sg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~-- 81 (236)
+...++|++++|+||||||||||+++|++ ...++ +|+| ++|.++.. .... ..++++..+.
T Consensus 45 s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g-----~~~~~~~~~G~i~~~g~~~~~-----~~~~----~~i~yv~Q~~~~ 110 (617)
T TIGR00955 45 SGVAKPGELLAVMGSSGAGKTTLMNALAF-----RSPKGVKGSGSVLLNGMPIDA-----KEMR----AISAYVQQDDLF 110 (617)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhC-----CCCCCCcceeEEEECCEECCH-----HHHh----hhceeecccccc
Confidence 33468899999999999999999999999 44443 6888 89988731 1111 1244443332
Q ss_pred --ccChhHHHHHHHHHHHHHhhCCCceE-Eec-hHHHHHHHHhcCCCCCCCC-cccchh-hhcccccccccchhhhhccc
Q 048453 82 --EFTAKEFRDSAVPLISEILSRDHIPF-IVG-GTNYYIQALVSPFLLDDSA-EDMDES-CFGSLSGIKQLFYFTCICTL 155 (236)
Q Consensus 82 --~~s~~~~~~~~~~~i~~~~~~~~~~i-l~G-G~~~~irall~~~l~d~~~-~~ld~~-~~~~ls~ge~q~~~~~~~~~ 155 (236)
..++.+...... .+ +.|- +.. -....+..+++.+-+.... ..+... ..+.+||||+|
T Consensus 111 ~~~lTV~e~l~f~~----~~----~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrk--------- 173 (617)
T TIGR00955 111 IPTLTVREHLMFQA----HL----RMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK--------- 173 (617)
T ss_pred CccCcHHHHHHHHH----hc----CCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhh---------
Confidence 234444332110 11 1110 000 0122345555443222110 111100 13569999988
Q ss_pred chhhhhhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 156 NTVLYRLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++...-.......+.-+|++.+. +|+.....+.+.|..+...|++
T Consensus 174 -------------------Rvsia~aL~~~p~vlllDEPtsg-LD~~~~~~l~~~L~~l~~~g~t 218 (617)
T TIGR00955 174 -------------------RLAFASELLTDPPLLFCDEPTSG-LDSFMAYSVVQVLKGLAQKGKT 218 (617)
T ss_pred -------------------HHHHHHHHHcCCCEEEeeCCCcc-hhHHHHHHHHHHHHHHHhCCCE
Confidence 33222223334556678988888 9999999999999888766765
No 350
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.06 E-value=1.8e-10 Score=100.83 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=36.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
+....+|++++|+||||||||||+++|++ ++++++|+| ++|
T Consensus 57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~G-----l~~p~~G~I~i~g 98 (282)
T cd03291 57 NLKIEKGEMLAITGSTGSGKTSLLMLILG-----ELEPSEGKIKHSG 98 (282)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECC
Confidence 45578999999999999999999999999 888999998 565
No 351
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.06 E-value=3.3e-10 Score=91.73 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=73.9
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC-----eecccCCCChhhhcCCceeeccccCcc--c
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG-----LDVLTNKVSLQDQKGVPHHLLGTVSPN--V 81 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g-----~dI~t~~~~~~e~~~~~~~li~~v~~~--~ 81 (236)
...+|++++|+|.||||||||+++|++ -+.||+|.| |+- .|+ ...++.+++.....--+++..+ +
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~-----rl~p~~G~v~Y~~r~~~~~dl--~~msEaeRR~L~RTeWG~VhQnP~D 100 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISG-----RLTPDAGTVTYRMRDGQPRDL--YTMSEAERRRLLRTEWGFVHQNPRD 100 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhc-----ccCCCCCeEEEEcCCCCchhH--hhhchHHHHHHhhhccceeecCccc
Confidence 467899999999999999999999999 788999999 853 334 3445555543322222333211 1
Q ss_pred c----cCh----------------hHHHHHHHHHHHHHh-----hCCCceEEechHHHHH---HHHhcC---CCCCCCCc
Q 048453 82 E----FTA----------------KEFRDSAVPLISEIL-----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAE 130 (236)
Q Consensus 82 ~----~s~----------------~~~~~~~~~~i~~~~-----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~ 130 (236)
. .++ +.....+.+.+++.- -......++||+.+++ |.++.. +++|||+-
T Consensus 101 GLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTG 180 (258)
T COG4107 101 GLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180 (258)
T ss_pred cceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCC
Confidence 1 111 122223333333321 1112235899998875 677754 56899999
Q ss_pred ccchh
Q 048453 131 DMDES 135 (236)
Q Consensus 131 ~ld~~ 135 (236)
.+|..
T Consensus 181 GLDVS 185 (258)
T COG4107 181 GLDVS 185 (258)
T ss_pred Ccchh
Confidence 99865
No 352
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.06 E-value=4.1e-10 Score=107.13 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=67.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCee--cccCCCChhhhcCCce-eeccccC-ccccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLD--VLTNKVSLQDQKGVPH-HLLGTVS-PNVEF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~d--I~t~~~~~~e~~~~~~-~li~~v~-~~~~~ 83 (236)
.....+|++++|+||||||||||+++|++ ++.+++|.|+-+.+ |+.. ........+. ...+.+. ....+
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G-----~~~p~~G~i~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~~~~~~ 414 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITG-----QEQPDSGTIKIGETVKLAYV--DQSRDALDPNKTVWEEISGGLDII 414 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcC-----CCCCCCeEEEECCceEEEEE--eCCccccCCCCcHHHHHHhhcccc
Confidence 34568899999999999999999999999 88899999843332 2110 0000000000 0000000 00000
Q ss_pred ChhHHHHHHHHHHHHHh-----hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 84 TAKEFRDSAVPLISEIL-----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~-----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
........+...+..+- ......-++||+.+++ ++++.+ +++|||++++|...
T Consensus 415 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 415 QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 00000011112222211 1122345899998875 888866 67999999999764
No 353
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.05 E-value=5.2e-10 Score=106.57 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=67.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCee--cccCCCChhhhcCCceeeccccCcccccCh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLD--VLTNKVSLQDQKGVPHHLLGTVSPNVEFTA 85 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~d--I~t~~~~~~e~~~~~~~li~~v~~~~~~s~ 85 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.|+.+.+ |+.. +. +... +. ..+++
T Consensus 344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G-----~~~p~~G~i~~~~~~~i~~v--~q-~~~~----~~------~~~tv 405 (556)
T PRK11819 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITG-----QEQPDSGTIKIGETVKLAYV--DQ-SRDA----LD------PNKTV 405 (556)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCceEEEEE--eC-chhh----cC------CCCCH
Confidence 44578899999999999999999999999 88899999943332 2110 00 0000 00 00111
Q ss_pred hHHH-------------HHHHHHHHHHh-----hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 86 KEFR-------------DSAVPLISEIL-----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 86 ~~~~-------------~~~~~~i~~~~-----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
.+.. ..+...+..+- .....--++||+.+++ ++++.+ +++|||+.++|...
T Consensus 406 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 480 (556)
T PRK11819 406 WEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480 (556)
T ss_pred HHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1110 01112222211 1222346899998875 888866 67999999999763
No 354
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.04 E-value=1.6e-10 Score=110.99 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=96.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc----ccCh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV----EFTA 85 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~----~~s~ 85 (236)
.++|++++|+||+|||||||+.+||++...- ...+|+| ++|.... .....+ ..+++.+++ .+++
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~--~~~~G~ilvNG~~~~-----~~~~~~----~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGG--LKLSGEILLNGRPRD-----SRSFRK----ISGYVQQDDVLLPTLTV 121 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCC--CcceEEEEECCccCc-----hhhhhh----eeEEEcccccccccccH
Confidence 5789999999999999999999999964321 2367888 7884431 122222 245554443 3555
Q ss_pred hHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhh-----hcccccccccchhhhhcccchhhh
Q 048453 86 KEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESC-----FGSLSGIKQLFYFTCICTLNTVLY 160 (236)
Q Consensus 86 ~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~-----~~~ls~ge~q~~~~~~~~~~~~~~ 160 (236)
.+....+ ..+...... -.---..++..++..+.+ ...++.. .+-+|||||+
T Consensus 122 ~EtL~f~----A~lrlp~~~--~~~~k~~~V~~vi~~LgL----~~~~~t~ig~~~~rgiSGGErk-------------- 177 (613)
T KOG0061|consen 122 RETLRFS----ALLRLPSSL--SKEEKRERVEEVISELGL----EKCADTLIGNPGIRGLSGGERK-------------- 177 (613)
T ss_pred HHHHHHH----HHhcCCCCC--CHHHHHHHHHHHHHHcCC----hhhccceecCCCCCccccchhh--------------
Confidence 5544321 111111110 000112234555544322 2222222 2569999987
Q ss_pred hhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 161 RLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
++...........+.-+|++... +|.....++++.|.-+-..|+++
T Consensus 178 --------------Rvsia~Ell~~P~iLflDEPTSG-LDS~sA~~vv~~Lk~lA~~grtV 223 (613)
T KOG0061|consen 178 --------------RVSIALELLTDPSILFLDEPTSG-LDSFSALQVVQLLKRLARSGRTV 223 (613)
T ss_pred --------------HHHHHHHHHcCCCEEEecCCCCC-cchhhHHHHHHHHHHHHhCCCEE
Confidence 44433333344557788999887 99999999999998888888864
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.03 E-value=7.4e-10 Score=87.71 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=70.3
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCc--eeeccccCcccc--c-
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVP--HHLLGTVSPNVE--F- 83 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~--~~li~~v~~~~~--~- 83 (236)
.+.+|+++.|+||||||||||+..+++.+...+ + -+|.+ .++.++........+..... ..++..++..++ |
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F-~-~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fA 101 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF-S-CTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFA 101 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCc-c-eeeEEEECCeeccccchhhhheeeeecccccccccccccceEEe
Confidence 367899999999999999999999999654332 1 24555 67888743222211111100 001111111111 1
Q ss_pred ---Ch--hHHHHHHHHHHHHHhh----CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 84 ---TA--KEFRDSAVPLISEILS----RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 84 ---s~--~~~~~~~~~~i~~~~~----~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++ ..-...+..++++.-. ......++||+.-++ |+++.. +++|||.+.+|.-
T Consensus 102 lp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~A 168 (213)
T COG4136 102 LPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168 (213)
T ss_pred cCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHH
Confidence 00 1122233334444321 123346899998876 888855 7899999999754
No 356
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.2e-10 Score=106.86 Aligned_cols=119 Identities=20% Similarity=0.360 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC----cee---eccccCcccc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV----PHH---LLGTVSPNVE 82 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~----~~~---li~~v~~~~~ 82 (236)
..+|+.++|+||||+||||++|.|-+ +....+|.| ++|+|| ...+...++.. |+. +-+.+-.+-.
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfR-----ffdv~sGsI~iDgqdI--rnvt~~SLRs~IGVVPQDtvLFNdTI~yNIr 633 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFR-----FFDVNSGSITIDGQDI--RNVTQSSLRSSIGVVPQDTVLFNDTILYNIR 633 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHH-----HhhccCceEEEcCchH--HHHHHHHHHHhcCcccCcceeecceeeehee
Confidence 46799999999999999999999999 888899999 999999 34444433321 211 1122211111
Q ss_pred c-----ChhHHHHHH-----HHHHHHHhhCC------CceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 83 F-----TAKEFRDSA-----VPLISEILSRD------HIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 83 ~-----s~~~~~~~~-----~~~i~~~~~~~------~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
| +-.+....+ ++.|-...+.. +..-++||..+++ |++++. .++||.++++|..+
T Consensus 634 yak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~t 709 (790)
T KOG0056|consen 634 YAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNT 709 (790)
T ss_pred ecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCcc
Confidence 1 111111111 11221111111 1224789999986 899976 56899999999764
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.01 E-value=2.6e-10 Score=118.47 Aligned_cols=168 Identities=15% Similarity=0.152 Sum_probs=97.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cccC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEFT 84 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~s 84 (236)
..++|++++|+||||||||||+++|++.+.. ...+++|+| |+|.++... .. ...+ .++++... ..++
T Consensus 83 ~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-~~~~~~G~I~~~G~~~~~~--~~-~~r~----~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 83 LIKPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGITPEEI--KK-HYRG----DVVYNAETDVHFPHLT 154 (1394)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCC-CCCCceeEEEECCEehHHH--Hh-hcCc----eeEEeccccccCCCCC
Confidence 4578999999999999999999999994321 124689999 899887321 11 1111 13333222 2345
Q ss_pred hhHHHHHHHHHHHHHhhCCCceEEechH-HHH----HHHHhcCCCCCCC-Ccccchhhhcccccccccchhhhhcccchh
Q 048453 85 AKEFRDSAVPLISEILSRDHIPFIVGGT-NYY----IQALVSPFLLDDS-AEDMDESCFGSLSGIKQLFYFTCICTLNTV 158 (236)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~il~GG~-~~~----irall~~~l~d~~-~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~ 158 (236)
+.+....+. .+......+ .+-+ ..+ ++.+++.+-+... ....-...++.+||||||
T Consensus 155 V~E~l~f~~----~~~~~~~~~--~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerk------------ 216 (1394)
T TIGR00956 155 VGETLDFAA----RCKTPQNRP--DGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERK------------ 216 (1394)
T ss_pred HHHHHHHHH----HhCCCCCCC--CCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccch------------
Confidence 555443211 111000000 0111 111 2334433322211 111112236889999998
Q ss_pred hhhhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHH-hCCC
Q 048453 159 LYRLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYAR-TGVL 220 (236)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~-tg~~ 220 (236)
++...........+.-+|++.+. +|+.....+.+.|..+.. .|++
T Consensus 217 ----------------RvsIA~aL~~~p~vlllDEPTsg-LD~~~~~~i~~~L~~la~~~g~t 262 (1394)
T TIGR00956 217 ----------------RVSIAEASLGGAKIQCWDNATRG-LDSATALEFIRALKTSANILDTT 262 (1394)
T ss_pred ----------------HHHHHHHHHhCCCEEEEeCCCCC-cCHHHHHHHHHHHHHHHHhcCCE
Confidence 44433344455678889999988 999999999999988865 4765
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.00 E-value=1.8e-10 Score=94.12 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=25.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHH
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La 35 (236)
+...++|++++|+||||||||||+++|.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4567899999999999999999999985
No 359
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.00 E-value=9e-10 Score=106.91 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=34.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
...++|++++|+||||||||||+++|+| ++++++|+++
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~G-----l~~~~~G~i~ 510 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGE-----LWPVYGGRLT 510 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCeEe
Confidence 3568999999999999999999999999 7788888873
No 360
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.6e-09 Score=97.37 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=41.9
Q ss_pred CccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 6 SKQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 6 ~~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
|.-..+++|+++.|+|.|||||||+++.|.| +..|++|.| .+|.+|
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtG-----L~~PqsG~I~ldg~pV 387 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTG-----LYQPQSGEILLDGKPV 387 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhc-----ccCCCCCceeECCccC
Confidence 4455688999999999999999999999999 999999999 689888
No 361
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.98 E-value=6.4e-10 Score=100.12 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=57.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVS 78 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~ 78 (236)
....+|+.++|+|.||||||-.+..+.+.++..-..--+|.| |+|.|+ ...++.++.+++..-++++.
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl--l~~se~~lr~iRG~~I~MIF 99 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL--LAASERQLRGVRGNKIGMIF 99 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh--hcCCHHHHhhhcccceEEEe
Confidence 346789999999999999999999999987765555567788 999999 67888899988877777763
No 362
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.96 E-value=2.6e-11 Score=99.61 Aligned_cols=126 Identities=15% Similarity=0.194 Sum_probs=71.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC-eecccCCCChhhhc--CCceeeccccCccccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG-LDVLTNKVSLQDQK--GVPHHLLGTVSPNVEF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g-~dI~t~~~~~~e~~--~~~~~li~~v~~~~~~ 83 (236)
+..+.+|++-+|+||||+||||++-.|.| -..|+.|.+ |+| .||. +.+..+.+ ++-.. +..-...+..
T Consensus 25 s~~v~~Gelr~lIGpNGAGKTT~mD~ItG-----Ktrp~~G~v~f~g~~dl~--~~~e~~IAr~GIGRK-FQ~PtVfe~l 96 (249)
T COG4674 25 SFSVDPGELRVLIGPNGAGKTTLMDVITG-----KTRPQEGEVLFDGDTDLT--KLPEHRIARAGIGRK-FQKPTVFENL 96 (249)
T ss_pred EEEecCCeEEEEECCCCCCceeeeeeecc-----cCCCCcceEEEcCchhhc--cCCHHHHHHhccCcc-ccCCeehhhc
Confidence 44578899999999999999999999999 778899999 677 7884 44444443 33211 2222344566
Q ss_pred ChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhccccccccc
Q 048453 84 TAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQL 146 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q 146 (236)
++.+..+.+... .+.-.+.+.+.....-+..+.+++.-....+........||-||+|
T Consensus 97 tV~eNLelA~~~-----~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 97 TVRENLELALNR-----DKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred cHHHHHHHHhcC-----CcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 666554332110 0000111111111111223333333334444445556677888877
No 363
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.96 E-value=1.4e-10 Score=94.01 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=45.4
Q ss_pred CCccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeec
Q 048453 5 GSKQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLL 74 (236)
Q Consensus 5 ~~~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li 74 (236)
.|.+-+...|+++-++||||||||||+..+|| +++ -+|.| +.|.++ ...+..|+++-+.|+.
T Consensus 16 ~plS~qv~aGe~~HliGPNGaGKSTLLA~lAG-----m~~-~sGsi~~~G~~l--~~~~~~eLArhRAYLs 78 (248)
T COG4138 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-----MTS-GSGSIQFAGQPL--EAWSATELARHRAYLS 78 (248)
T ss_pred cccccccccceEEEEECCCCccHHHHHHHHhC-----CCC-CCceEEECCcch--hHHhHhHHHHHHHHHh
Confidence 34455667899999999999999999999999 554 46666 999998 4445555554433333
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=98.96 E-value=3.7e-10 Score=110.29 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=35.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
+....+|++++|+||||||||||+++|+| ++.|++|.|+
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~G-----ll~p~~G~I~ 567 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISG-----ELQPSSGTVF 567 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCCceEE
Confidence 34568899999999999999999999999 8899999984
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=98.94 E-value=1e-09 Score=114.29 Aligned_cols=43 Identities=26% Similarity=0.576 Sum_probs=38.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC---CCce-ecCeecc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD---SMQV-YQGLDVL 57 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d---sg~i-~~g~dI~ 57 (236)
..++|++++|+||||||||||+++|++ .+.++ +|.| |+|.++.
T Consensus 187 ~i~~Ge~~~llGpnGSGKSTLLk~LaG-----~l~~~~~~~G~I~~nG~~~~ 233 (1470)
T PLN03140 187 IIKPSRMTLLLGPPSSGKTTLLLALAG-----KLDPSLKVSGEITYNGYRLN 233 (1470)
T ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhC-----CCCCCCcceeEEEECCEech
Confidence 468899999999999999999999999 56666 8999 8999883
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.93 E-value=1.4e-09 Score=102.65 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=67.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecC--eecccCCCChhhhcCCceeeccccCcccccCh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQG--LDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTA 85 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g--~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~ 85 (236)
+....+|+.|+|+||||+|||||++.|++ .+.+++|.|..| ..|+.-.-...++. ..-++
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g-----~~~~~~G~v~~g~~v~igyf~Q~~~~l~-------------~~~t~ 403 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAG-----ELGPLSGTVKVGETVKIGYFDQHRDELD-------------PDKTV 403 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhh-----hcccCCceEEeCCceEEEEEEehhhhcC-------------ccCcH
Confidence 44578899999999999999999999999 666778877433 33321110000000 11122
Q ss_pred hHHHHH---------HHHHHHHHh-----hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhhhccc
Q 048453 86 KEFRDS---------AVPLISEIL-----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCFGSL 140 (236)
Q Consensus 86 ~~~~~~---------~~~~i~~~~-----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~~~l 140 (236)
.++... +...+.... ....+-.++||..-++ +.++.+ +++||||.+||..++..|
T Consensus 404 ~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL 478 (530)
T COG0488 404 LEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478 (530)
T ss_pred HHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH
Confidence 222221 122222211 1223446899997765 444444 679999999997654443
No 367
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.8e-10 Score=100.69 Aligned_cols=117 Identities=21% Similarity=0.339 Sum_probs=78.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccccc-----
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEF----- 83 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~----- 83 (236)
..+.|+.++|+||+|+||||+++.|-+ ++.+++|.| .+|.|| ..++...+.+. +++++++..+
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfR-----FyD~~sG~I~id~qdi--r~vtq~slR~a----Ig~VPQDtvLFNDti 353 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFR-----FYDVNSGSITIDGQDI--RDVTQQSLRRA----IGIVPQDTVLFNDTI 353 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHH-----HhCCcCceEEEcchhH--HHhHHHHHHHH----hCcCcccceehhhhH
Confidence 357899999999999999999999999 999999999 899999 44555444432 4444433221
Q ss_pred -----------ChhHHHHH-----HHHHHHHHhhCCCc------eEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 84 -----------TAKEFRDS-----AVPLISEILSRDHI------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 84 -----------s~~~~~~~-----~~~~i~~~~~~~~~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
+..+.... ....|..+...... --++||..|++ |.++.. +++||.++++|.+
T Consensus 354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 11111111 11222222222222 23789999986 999966 6799999999987
Q ss_pred hh
Q 048453 136 CF 137 (236)
Q Consensus 136 ~~ 137 (236)
+-
T Consensus 434 te 435 (497)
T COG5265 434 TE 435 (497)
T ss_pred HH
Confidence 53
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=98.93 E-value=4.8e-10 Score=116.66 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=92.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cccC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEFT 84 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~s 84 (236)
..++|++++|+||||||||||+++|++.... ...+|.| ++|.++.. ....+ .++++..+ ...+
T Consensus 902 ~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~---g~~~G~I~inG~~~~~-----~~~~~----~igyv~Q~d~~~~~lT 969 (1470)
T PLN03140 902 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISGFPKKQ-----ETFAR----ISGYCEQNDIHSPQVT 969 (1470)
T ss_pred EEECCeEEEEECCCCCCHHHHHHHHcCCCCC---CcccceEEECCccCCh-----HHhhh----heEEEccccccCCCCc
Confidence 3578999999999999999999999994321 0357888 78876521 11111 13333322 2344
Q ss_pred hhHHHHHHHHHHHHHhhCCCceE-Eec-hHHHHHHHHhcCCCCCCCCccc-chhhhcccccccccchhhhhcccchhhhh
Q 048453 85 AKEFRDSAVPLISEILSRDHIPF-IVG-GTNYYIQALVSPFLLDDSAEDM-DESCFGSLSGIKQLFYFTCICTLNTVLYR 161 (236)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~i-l~G-G~~~~irall~~~l~d~~~~~l-d~~~~~~ls~ge~q~~~~~~~~~~~~~~~ 161 (236)
+.+..... .. . +.|- ... ....++..+++.+-+....... -...++.+|+||||
T Consensus 970 V~E~L~~~----a~-l---r~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk--------------- 1026 (1470)
T PLN03140 970 VRESLIYS----AF-L---RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK--------------- 1026 (1470)
T ss_pred HHHHHHHH----HH-h---CCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH---------------
Confidence 44433221 00 1 1110 000 1122345555443222110000 00013689999998
Q ss_pred hhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 162 LFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++...-.......+.-+|++.+. +|+.....+.+.|.-+...|++
T Consensus 1027 -------------RvsIa~aL~~~P~lL~LDEPTsg-LD~~~a~~v~~~L~~l~~~g~t 1071 (1470)
T PLN03140 1027 -------------RLTIAVELVANPSIIFMDEPTSG-LDARAAAIVMRTVRNTVDTGRT 1071 (1470)
T ss_pred -------------HHHHHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCCE
Confidence 44433344455667788999988 9999999999999888777765
No 369
>PLN03130 ABC transporter C family member; Provisional
Probab=98.89 E-value=1.9e-09 Score=113.38 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=72.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC-Ccee-cCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS-MQVY-QGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds-g~i~-~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
...++|+.++|+||+|||||||++.|.| .+.+++ |.|. ++ .|+ -..+-++.+-+++..+ .+
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG-----~~~~~~GG~I~l~~-~Ia-------yv~Q~p~LfngTIreNI~fg~~ 704 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLG-----ELPPRSDASVVIRG-TVA-------YVPQVSWIFNATVRDNILFGSP 704 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHH-----hhccCCCceEEEcC-eEE-------EEcCccccCCCCHHHHHhCCCc
Confidence 4578999999999999999999999999 778888 7873 32 121 1122233333333221 22
Q ss_pred cChhHHHHHH-----HHHHHHHhhCCCc------eEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 83 FTAKEFRDSA-----VPLISEILSRDHI------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 83 ~s~~~~~~~~-----~~~i~~~~~~~~~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
++...+.+.+ .+.+..+...... .-++||+.+++ ||++.+ +++||+++++|...
T Consensus 705 ~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 705 FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 3333333211 1123222211122 23789999986 999977 78999999999753
No 370
>PLN03232 ABC transporter C family member; Provisional
Probab=98.89 E-value=2.1e-09 Score=112.56 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=70.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce--ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV--YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i--~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
...++|+.++|+||+|||||||++.|+| .+.+++|.+ +++ .| .-..+-++.+-+++..+ ..
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG-----~~~~~~G~i~~~~~-~I-------ayv~Q~p~Lf~gTIreNI~fg~~ 704 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLG-----ELSHAETSSVVIRG-SV-------AYVPQVSWIFNATVRENILFGSD 704 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCcccCCCEEEecC-cE-------EEEcCccccccccHHHHhhcCCc
Confidence 4578999999999999999999999999 777777654 222 11 11122233333333211 12
Q ss_pred cChhHHHHHH-----HHHHHHHhhCCCce------EEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 83 FTAKEFRDSA-----VPLISEILSRDHIP------FIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 83 ~s~~~~~~~~-----~~~i~~~~~~~~~~------il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
++...+.+.+ .+.++.+....... -++||+.+++ ||++.+ +++||+++++|..+
T Consensus 705 ~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t 775 (1495)
T PLN03232 705 FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHV 775 (1495)
T ss_pred cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 3333333221 11222222222222 3789999996 999977 78999999999764
No 371
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.88 E-value=2.6e-09 Score=91.86 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=39.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
-.+++|++++++||||+||||++++|.| ++.|++|.| ..|.+-
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTG-----ll~p~~G~v~V~G~~P 88 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTG-----LLLPTSGKVRVNGKDP 88 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhC-----ccccCCCeEEecCcCc
Confidence 3578999999999999999999999999 999999999 788765
No 372
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.87 E-value=2.4e-09 Score=97.62 Aligned_cols=142 Identities=25% Similarity=0.305 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHH
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRD 90 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~ 90 (236)
...|++++++||||-||||+++.||| .+.||+|. .....|. -| .+++.++..-++.++..
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG-----~ikPdeg~-~~~~~vS-yK-------------PQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAG-----VIKPDEGS-EEDLKVS-YK-------------PQYISPDYDGTVEDLLR 423 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhc-----cccCCCCC-CccceEe-ec-------------ceeecCCCCCcHHHHHH
Confidence 56789999999999999999999999 99999996 2222221 11 23333444455555543
Q ss_pred HHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCC
Q 048453 91 SAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPV 170 (236)
Q Consensus 91 ~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~ 170 (236)
.+ .... -++++|-..+++++-+ ..+-++.+.+|||||.|
T Consensus 424 ~~---~~~~----------~~~s~~~~ei~~pl~l----~~i~e~~v~~LSGGELQ------------------------ 462 (591)
T COG1245 424 SA---IRSA----------FGSSYFKTEIVKPLNL----EDLLERPVDELSGGELQ------------------------ 462 (591)
T ss_pred Hh---hhhh----------cccchhHHhhcCccch----HHHHhcccccCCchhHH------------------------
Confidence 21 1100 1234455555555322 23334557889999888
Q ss_pred CcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhC
Q 048453 171 GPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTG 218 (236)
Q Consensus 171 ~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg 218 (236)
+++.+.....-+-|.-+|+++|= +|..-+-.+-|++..+....
T Consensus 463 ----RvaIaa~L~reADlYllDEPSA~-LDvEqR~~vakvIRR~~e~~ 505 (591)
T COG1245 463 ----RVAIAAALSREADLYLLDEPSAY-LDVEQRIIVAKVIRRFIENN 505 (591)
T ss_pred ----HHHHHHHhccccCEEEecCchhh-ccHHHHHHHHHHHHHHHhhc
Confidence 33333333333446678888887 77776666677776665543
No 373
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.86 E-value=7.5e-09 Score=84.54 Aligned_cols=44 Identities=32% Similarity=0.417 Sum_probs=39.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+-..++|..++|+|.||||||||+++|+| ++.|++|.| ++|..+
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaG-----mi~PTsG~il~n~~~L 77 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGEILINDHPL 77 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhc-----ccCCCCceEEECCccc
Confidence 33467899999999999999999999999 999999999 788776
No 374
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.85 E-value=2.5e-09 Score=111.88 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=69.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----ccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEF 83 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~ 83 (236)
...++|++++|+||||||||||+++|+| .+.+++|+| ++| .|+-.. +-++.+-+.+..+ ..+
T Consensus 447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G-----~~~~~~G~i~~~g-~iayv~-------Q~~~l~~~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMG-----ELEPSEGKIKHSG-RISFSP-------QTSWIMPGTIKDNIIFGLSY 513 (1490)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECC-EEEEEe-------CCCccCCccHHHHHHhcccc
Confidence 3467999999999999999999999999 888999998 565 231110 0011111111000 112
Q ss_pred ChhHHHHHH-----HHHHHHHhhCC------CceEEechHHHHH---HHHhcC---CCCCCCCcccchhhh
Q 048453 84 TAKEFRDSA-----VPLISEILSRD------HIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESCF 137 (236)
Q Consensus 84 s~~~~~~~~-----~~~i~~~~~~~------~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~~ 137 (236)
+...+.... .+.+..+.... +.--++||+.+++ ||++.+ +++|||++++|....
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~ 584 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE 584 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 211121111 11121111111 1234899999986 999966 789999999997643
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=7.2e-10 Score=93.85 Aligned_cols=40 Identities=35% Similarity=0.384 Sum_probs=36.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
....+|+.++|+|+||||||||++.|++ ++.||+|+| .+|
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaG-----i~~Pt~G~v~v~G 88 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAG-----IYKPTSGKVKVTG 88 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhC-----ccCCCCceEEEcc
Confidence 3568899999999999999999999999 999999999 454
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.81 E-value=5.8e-09 Score=86.70 Aligned_cols=118 Identities=15% Similarity=0.274 Sum_probs=61.8
Q ss_pred ccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCe----EEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCc--
Q 048453 7 KQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIE----IINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSP-- 79 (236)
Q Consensus 7 ~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~----ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~-- 79 (236)
.+....+| +++|+||||||||||+++|++.++.. +-....+.+ +.|.++.. .. . ...++++.+
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-----~~~v~~vfq~~ 85 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK--PA--N-----FAEVTLTFDNS 85 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC--CC--c-----eEEEEEEEEcC
Confidence 34456778 99999999999999999999843211 111222334 45555421 11 0 112333322
Q ss_pred ccccChhHHHHHHHHHHHHH-hhCCCceEEechHHHHH---HHHh----cC---CCCCCCCcccchh
Q 048453 80 NVEFTAKEFRDSAVPLISEI-LSRDHIPFIVGGTNYYI---QALV----SP---FLLDDSAEDMDES 135 (236)
Q Consensus 80 ~~~~s~~~~~~~~~~~i~~~-~~~~~~~il~GG~~~~i---rall----~~---~l~d~~~~~ld~~ 135 (236)
+..|.... ...+.+.++.. ......--++||+.+.+ ++++ .+ +++|||++++|..
T Consensus 86 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 86 DGRYSIIS-QGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred CCceeEEe-hhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 22221110 11122222220 01112234789988875 6654 23 6689999999865
No 377
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.81 E-value=2.9e-09 Score=88.35 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+++|++++|+||||||||||++.|++.++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45899999999999999999999999554
No 378
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.79 E-value=4.8e-09 Score=110.08 Aligned_cols=114 Identities=20% Similarity=0.271 Sum_probs=69.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----ccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEF 83 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~ 83 (236)
...++|++++|+||||||||||+++|+| .+.+++|+| ++| .|+... +-++.+-+.+..+ ..+
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g-----~~~~~~G~i~~~g-~i~yv~-------Q~~~l~~~Ti~eNI~~g~~~ 725 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLA-----EMDKVEGHVHMKG-SVAYVP-------QQAWIQNDSLRENILFGKAL 725 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCccCCcEEEECC-EEEEEc-------CCccccCCcHHHHhhcCCcc
Confidence 4568999999999999999999999999 788899998 555 232110 0111111111111 112
Q ss_pred ChhHHHHHHHH------HHHHHhhC------CCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 84 TAKEFRDSAVP------LISEILSR------DHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 84 s~~~~~~~~~~------~i~~~~~~------~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+...+. .+.+ .+...... .+..-++||+.+++ ||++.+ +++|||++++|...
T Consensus 726 ~~~~~~-~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~ 795 (1522)
T TIGR00957 726 NEKYYQ-QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795 (1522)
T ss_pred CHHHHH-HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 222221 1111 11111111 11234799999986 999976 78999999999864
No 379
>PLN03073 ABC transporter F family; Provisional
Probab=98.77 E-value=8.8e-09 Score=100.76 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=34.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCee
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~d 55 (236)
+....+|++++|+||||||||||+++|++..- . -.|++|+| |.+.+
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~-~-g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI-D-GIPKNCQILHVEQE 243 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CCCCCCEEEEEecc
Confidence 34578899999999999999999999998420 0 13677777 64444
No 380
>PTZ00243 ABC transporter; Provisional
Probab=98.73 E-value=1e-08 Score=107.72 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=67.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccC----cccccC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVS----PNVEFT 84 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~----~~~~~s 84 (236)
...++|++++|+||||||||||+++|++ .+.+++|+|+....|+...- -++.+-+.+. ....+.
T Consensus 681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G-----~~~~~~G~i~~~~~i~yv~Q-------~~~l~~~Tv~enI~~~~~~~ 748 (1560)
T PTZ00243 681 VSVPRGKLTVVLGATGSGKSTLLQSLLS-----QFEISEGRVWAERSIAYVPQ-------QAWIMNATVRGNILFFDEED 748 (1560)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCCcEEEECCeEEEEeC-------CCccCCCcHHHHHHcCChhh
Confidence 3468999999999999999999999999 88889998843223321100 0111111110 001111
Q ss_pred hhHHHHH-----HHHHHHHHh------hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 85 AKEFRDS-----AVPLISEIL------SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 85 ~~~~~~~-----~~~~i~~~~------~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
...+... +.+.++.+. ...+.--++||+.+++ ||++.+ +++|||++++|...
T Consensus 749 ~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 749 AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 1111111 111122111 0122335899999986 999966 78999999999653
No 381
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.72 E-value=7e-09 Score=84.23 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=53.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhH------
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKE------ 87 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~------ 87 (236)
|++++|+||||||||||++.|++.++...+. ..+.+.++...+..+..+++++.......+...+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~---------~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFS---------ISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAE 71 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcccccc---------ccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEE
Confidence 6799999999999999999999955432211 1122234444444444444443211111111111
Q ss_pred ----HHHHHHHHHHHHhhCCCceEE---echHHHHHHHH
Q 048453 88 ----FRDSAVPLISEILSRDHIPFI---VGGTNYYIQAL 119 (236)
Q Consensus 88 ----~~~~~~~~i~~~~~~~~~~il---~GG~~~~iral 119 (236)
+.......+..++..++..++ .+|..++.+++
T Consensus 72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~ 110 (180)
T TIGR03263 72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKF 110 (180)
T ss_pred ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhC
Confidence 111224567778888888777 45555554444
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.71 E-value=7.3e-09 Score=81.21 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=54.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHH-------
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEF------- 88 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~------- 88 (236)
+++|+||||||||||++.|++.++..+ +. -....|.++...+..+..|++++.......+....|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~-----~~---~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~ 72 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF-----GF---SVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH 72 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc-----ee---cccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence 478999999999999999999543221 10 111234566667777788887765433222222111
Q ss_pred ---HHHHHHHHHHHhhCCCceEEec
Q 048453 89 ---RDSAVPLISEILSRDHIPFIVG 110 (236)
Q Consensus 89 ---~~~~~~~i~~~~~~~~~~il~G 110 (236)
.....+.+++++..++.+++..
T Consensus 73 ~~~yg~~~~~i~~~~~~g~~~il~~ 97 (137)
T cd00071 73 GNYYGTSKAAVEEALAEGKIVILEI 97 (137)
T ss_pred CEEecCcHHHHHHHHhCCCeEEEEe
Confidence 2234567888888898887754
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.65 E-value=7.2e-08 Score=91.50 Aligned_cols=121 Identities=20% Similarity=0.298 Sum_probs=67.3
Q ss_pred CccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ec-CeecccCCCChhhhcCCce-eecc-ccCccc
Q 048453 6 SKQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQ-GLDVLTNKVSLQDQKGVPH-HLLG-TVSPNV 81 (236)
Q Consensus 6 ~~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~-g~dI~t~~~~~~e~~~~~~-~li~-~v~~~~ 81 (236)
..+...++|+-+.|.||||||||||+|+||| +.+--+|.| +. +.++-- . -++..+|. .+-+ ...|+.
T Consensus 411 ~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG-----LWP~g~G~I~~P~~~~~lf--l--pQ~PY~p~GtLre~l~YP~~ 481 (604)
T COG4178 411 ELNFEVRPGERLLITGESGAGKTSLLRALAG-----LWPWGSGRISMPADSALLF--L--PQRPYLPQGTLREALCYPNA 481 (604)
T ss_pred cceeeeCCCCEEEEECCCCCCHHHHHHHHhc-----cCccCCCceecCCCCceEE--e--cCCCCCCCccHHHHHhCCCC
Confidence 3456688999999999999999999999999 444445544 22 211100 0 00000000 0111 112322
Q ss_pred --ccChhHHHHHH-----HHHHHHHhhC-CCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 82 --EFTAKEFRDSA-----VPLISEILSR-DHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 82 --~~s~~~~~~~~-----~~~i~~~~~~-~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
.++-.+..+-. .+.++.+-+. ....++++|..+++ |.+++. +++||.++++|..
T Consensus 482 ~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 482 APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 24444333211 1112222111 12347899999885 888865 6689999999865
No 384
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=2.6e-08 Score=101.92 Aligned_cols=113 Identities=27% Similarity=0.358 Sum_probs=72.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cccC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEFT 84 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~s 84 (236)
..++|+.++|+||+|||||+|+.+|.| -+...+|.+ ..|. + ....+.++.+-+.+..| .+|+
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLG-----Em~~~sG~v~v~gs-i-------aYv~Q~pWI~ngTvreNILFG~~~d 609 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILG-----EMPKLSGSVAVNGS-V-------AYVPQQPWIQNGTVRENILFGSPYD 609 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhc-----CcccccceEEEcCe-E-------EEeccccHhhCCcHHHhhhcCcccc
Confidence 468999999999999999999999999 445567766 4443 2 11223344444554332 3455
Q ss_pred hhHHHHHHH-----HHHHHHhhCCC-c------eEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 85 AKEFRDSAV-----PLISEILSRDH-I------PFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 85 ~~~~~~~~~-----~~i~~~~~~~~-~------~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
...|.+-.. ..++ ++..|+ + .-++||+.+++ ||+.++ +++|+|.+++|...
T Consensus 610 ~~rY~~Vi~aC~L~~Dle-~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 610 EERYDKVIKACALKKDLE-ILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHHHHHHHHHccCHhHHh-hcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 444432211 1111 222222 2 23799999986 999977 78999999999764
No 385
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.61 E-value=3.5e-08 Score=82.42 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=21.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHH
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La 35 (236)
..+| +++|+||||||||||+.+|.
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3344 99999999999999999995
No 386
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.60 E-value=1.2e-07 Score=80.77 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+++++|+||||||||||+++|+..
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999854
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.59 E-value=4e-08 Score=83.29 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred HHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 187 LLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 187 ~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.+.-+|++.+. +|+..+.++.+.|..+...|.+
T Consensus 159 ~llllDEPt~g-LD~~~~~~l~~~l~~~~~~g~t 191 (226)
T cd03270 159 VLYVLDEPSIG-LHPRDNDRLIETLKRLRDLGNT 191 (226)
T ss_pred CEEEEeCCccC-CCHHHHHHHHHHHHHHHhCCCE
Confidence 37788888887 8999998998888777655654
No 388
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.59 E-value=3.4e-08 Score=98.80 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=41.3
Q ss_pred ccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 7 KQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 7 ~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.....++|+++++.|||||||||++++|.| ..++++|++ ..|.++.
T Consensus 584 ls~~V~~gecfgLLG~NGAGKtT~f~mltG-----~~~~t~G~a~i~g~~i~ 630 (885)
T KOG0059|consen 584 LSFAVPPGECFGLLGVNGAGKTTTFKMLTG-----ETKPTSGEALIKGHDIT 630 (885)
T ss_pred eEEEecCCceEEEecCCCCCchhhHHHHhC-----CccCCcceEEEecCccc
Confidence 345678999999999999999999999999 999999999 5788884
No 389
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.54 E-value=2.2e-08 Score=84.00 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=26.3
Q ss_pred HHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 187 LLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 187 ~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.+.-+|++.+. +|+.....+.+.|+.+...|.+
T Consensus 153 ~~lllDEp~~~-lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 153 EALFIDEGFGT-LDPEALEAVATALELIRTENRM 185 (213)
T ss_pred CEEEEeCCccc-CCHHHHHHHHHHHHHHHhCCCE
Confidence 35678999977 9999999999999887665654
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.51 E-value=1.7e-07 Score=87.18 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=32.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
....+..+++|||||||||||++.+.+ .+.|..|.|.
T Consensus 412 gid~~srvAlVGPNG~GKsTLlKl~~g-----dl~p~~G~vs 448 (614)
T KOG0927|consen 412 GIDLDSRVALVGPNGAGKSTLLKLITG-----DLQPTIGMVS 448 (614)
T ss_pred ccCcccceeEecCCCCchhhhHHHHhh-----cccccccccc
Confidence 456778899999999999999999999 7778888774
No 391
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.51 E-value=1e-07 Score=82.65 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 187 LLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 187 ~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.|.-+|++.+. +|+.+..++.+.|..+...|.+
T Consensus 192 ~lllLDEPtsg-LD~~~~~~l~~~L~~l~~~g~t 224 (261)
T cd03271 192 TLYILDEPTTG-LHFHDVKKLLEVLQRLVDKGNT 224 (261)
T ss_pred cEEEEECCCCC-CCHHHHHHHHHHHHHHHhCCCE
Confidence 57788999988 9999999999999887766665
No 392
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.51 E-value=7.9e-08 Score=84.52 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCe-EEcCCCCc------------------eecCeecccCCCChhhhcCCceee
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIE-IINADSMQ------------------VYQGLDVLTNKVSLQDQKGVPHHL 73 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~-ii~~dsg~------------------i~~g~dI~t~~~~~~e~~~~~~~l 73 (236)
.+-+++|.|+|||||||++..||..++.. +++.|+.+ .|....+.+.+++..+ |++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~~l 165 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----PVI 165 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----hhh
Confidence 44689999999999999999999999886 67777766 3555555444444332 455
Q ss_pred ccccCcccccChhHHHHHHHHHHHHHhhCCCceEEec
Q 048453 74 LGTVSPNVEFTAKEFRDSAVPLISEILSRDHIPFIVG 110 (236)
Q Consensus 74 i~~v~~~~~~s~~~~~~~~~~~i~~~~~~~~~~il~G 110 (236)
.++..+.+.++++ +...|...+.++...++.|
T Consensus 166 ~g~~~~~~~v~~g-----i~~~I~~~~~~g~s~IiEG 197 (301)
T PRK04220 166 YGFERHVEPVSVG-----VEAVIERALKEGISVIIEG 197 (301)
T ss_pred hhHHHHHHHHHHH-----HHHHHHHHHHhCCcEEEec
Confidence 5666544443332 4456677777776555544
No 393
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.51 E-value=2.4e-07 Score=75.38 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHH
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDS 91 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~ 91 (236)
+...++|+|++|||||||++.|++.++..++..|.... ..|.++ ......+....|...
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i--------------------~~~~~~~g~~~fr~~ 62 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADI--------------------GWVFDVEGEEGFRDR 62 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCH--------------------hHHHHHhCHHHHHHH
Confidence 35579999999999999999999998888887776311 122222 001122344555555
Q ss_pred HHHHHHHHhhCCCceEEechH
Q 048453 92 AVPLISEILSRDHIPFIVGGT 112 (236)
Q Consensus 92 ~~~~i~~~~~~~~~~il~GG~ 112 (236)
..+.+.++.......+.+||.
T Consensus 63 e~~~l~~l~~~~~~vi~~ggg 83 (172)
T PRK05057 63 EEKVINELTEKQGIVLATGGG 83 (172)
T ss_pred HHHHHHHHHhCCCEEEEcCCc
Confidence 455666665555555556664
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=8.2e-08 Score=88.74 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
+..+..|..++|+|+||+|||||+|+|+.
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 44567899999999999999999999997
No 395
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.48 E-value=9.3e-08 Score=78.11 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChh------
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAK------ 86 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~------ 86 (236)
+|.+++|.||||+|||||+++|.... .+.--...+|.+|.+.|..++.++|+..-.........
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~----------~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD----------KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc----------CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence 78999999999999999999997743 23333455678888999999988876543222111111
Q ss_pred ----HHHHHHHHHHHHHhhCCCceEEe-chHH-HHHHHHhcC
Q 048453 87 ----EFRDSAVPLISEILSRDHIPFIV-GGTN-YYIQALVSP 122 (236)
Q Consensus 87 ----~~~~~~~~~i~~~~~~~~~~il~-GG~~-~~irall~~ 122 (236)
.|.--....++..+..|+..++. ..++ +.++..+.+
T Consensus 73 ~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~ 114 (191)
T COG0194 73 EYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPN 114 (191)
T ss_pred EEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCC
Confidence 22223455677777787776653 3332 335555544
No 396
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.40 E-value=5.1e-07 Score=77.51 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+.+++|+||||||||||+.+|+..+
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll 49 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVL 49 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999844
No 397
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.39 E-value=1.5e-07 Score=71.35 Aligned_cols=32 Identities=47% Similarity=0.778 Sum_probs=28.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+|+|+||+||||||+++.|+..++..+++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 58999999999999999999998888877666
No 398
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.38 E-value=2.3e-07 Score=69.69 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=31.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||++++. +|.+ +.|.|+.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~ 48 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNV 48 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHH
Confidence 3456779999999999999999999985 4445 7888873
No 399
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.38 E-value=2.8e-07 Score=85.37 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=39.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC-ce-ecCeecccCCCChhhhc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM-QV-YQGLDVLTNKVSLQDQK 67 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg-~i-~~g~dI~t~~~~~~e~~ 67 (236)
....++|++++|+||||||||||++ ++ ...+++| .| ++|.++. .++..++.
T Consensus 26 sl~i~~GEiv~L~G~SGsGKSTLLr--~~-----l~~~~sGg~I~ldg~~~~--~~~~~ai~ 78 (504)
T TIGR03238 26 NKELPSSSLLFLCGSSGDGKSEILA--EN-----KRKFSEGYEFFLDATHSF--SPNKNAME 78 (504)
T ss_pred ceeecCCCEEEEECCCCCCHHHHHh--cC-----CCCCCCCCEEEECCEECC--CCCHHHHH
Confidence 3457889999999999999999999 44 4556677 57 8999994 45554444
No 400
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.35 E-value=2.6e-07 Score=76.12 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhH-----
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKE----- 87 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~----- 87 (236)
++.+++|+||||||||||++.|...++. ++.-...+|.++.+.|..+..|+|+.--........+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc---------cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEE
Confidence 5789999999999999999999874321 22234556777888888888777764322111111111
Q ss_pred -----HHHHHHHHHHHHhhCCCceEEe
Q 048453 88 -----FRDSAVPLISEILSRDHIPFIV 109 (236)
Q Consensus 88 -----~~~~~~~~i~~~~~~~~~~il~ 109 (236)
+.--..+.|...+..++.+++.
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d 100 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMD 100 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEE
Confidence 1111345677788888887764
No 401
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.35 E-value=5.4e-07 Score=83.90 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=25.9
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
....|+.++|+|||||||||++++|+++
T Consensus 97 El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 97 ELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 4678999999999999999999999985
No 402
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.31 E-value=8.4e-07 Score=71.06 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
|.++..+.|+|++||||||+++.|+..++..++..|.
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~ 37 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDH 37 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 4567899999999999999999999998887776554
No 403
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.31 E-value=5.2e-07 Score=75.28 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=27.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
|-.++|.+++|+||||||||||++.|++.++
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457889999999999999999999999654
No 404
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.26 E-value=3e-07 Score=78.90 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 186 DLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 186 ~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
..+.-+|++.+. +|+..+..+...+..+...|.+
T Consensus 178 p~~lllDEPt~~-LD~~~~~~l~~~i~~~~~~g~~ 211 (247)
T cd03275 178 APFFVLDEVDAA-LDNTNVGKVASYIREQAGPNFQ 211 (247)
T ss_pred CCEEEEeccccc-CCHHHHHHHHHHHHHhccCCcE
Confidence 357778999988 9999988888888776544543
No 405
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.26 E-value=1.9e-06 Score=80.86 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=32.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
...+.|.-+.|+||||||||+|+|+|++ +.+..+|.+
T Consensus 456 ~~V~~g~~LLItG~sG~GKtSLlRvlgg-----LWp~~~G~l 492 (659)
T KOG0060|consen 456 LEVPSGQNLLITGPSGCGKTSLLRVLGG-----LWPSTGGKL 492 (659)
T ss_pred eEecCCCeEEEECCCCCchhHHHHHHhc-----ccccCCCeE
Confidence 3467899999999999999999999999 777777776
No 406
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.23 E-value=1.1e-06 Score=72.10 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCe
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIE 41 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ 41 (236)
|++++|+||||||||||++.|++.++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 6799999999999999999999965543
No 407
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.22 E-value=1.3e-06 Score=71.41 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCe
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIE 41 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ 41 (236)
+|++++|+|+||||||||+++|++.++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 48999999999999999999999966543
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.21 E-value=1.2e-06 Score=72.05 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=31.6
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
..+.|+.++|+||||||||||+++|++ .++++.+.+
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~-----~i~~~~~~i 56 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLA-----FIPPDERII 56 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHh-----hcCCCCCEE
Confidence 356799999999999999999999999 777777766
No 409
>PRK13948 shikimate kinase; Provisional
Probab=98.19 E-value=2.5e-06 Score=70.11 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
++++..++|+|..||||||+++.|+..++..++..|..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ 44 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY 44 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH
Confidence 34668899999999999999999999999999988853
No 410
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.18 E-value=5.4e-06 Score=68.89 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.+.+|+||||||||||+.+|.-.++
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~ 46 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLG 46 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Confidence 4779999999999999999976443
No 411
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.14 E-value=2.1e-06 Score=71.60 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+.++.+|+|+|+||||||||++.|++.+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999999976
No 412
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.13 E-value=6.9e-07 Score=73.06 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHH---
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFR--- 89 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~--- 89 (236)
++++++|+||+|||||||++.|...++..+- .....+|.++...|..+..+|+++--.........+|.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~--------~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~ 72 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFG--------RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYG 72 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEE--------EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccc--------cceeecccCCcccccCCcceEEEeechhhhhhccccEEEEe
Confidence 3678999999999999999999886553221 11223455666667777777665322111000001111
Q ss_pred -------HHHHHHHHHHhhCCCceEEech
Q 048453 90 -------DSAVPLISEILSRDHIPFIVGG 111 (236)
Q Consensus 90 -------~~~~~~i~~~~~~~~~~il~GG 111 (236)
-.....|..+...++.+++.-.
T Consensus 73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~~ 101 (183)
T PF00625_consen 73 EYDGNYYGTSKSAIDKVLEEGKHCILDVD 101 (183)
T ss_dssp EETTEEEEEEHHHHHHHHHTTTEEEEEET
T ss_pred eecchhhhhccchhhHhhhcCCcEEEEcc
Confidence 0124467777788888777543
No 413
>PRK13949 shikimate kinase; Provisional
Probab=98.13 E-value=2.7e-06 Score=69.01 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=28.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.++|+|++||||||+++.||+.++..+++.|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 48999999999999999999999888877764
No 414
>PRK08118 topology modulation protein; Reviewed
Probab=98.12 E-value=2e-06 Score=69.69 Aligned_cols=32 Identities=38% Similarity=0.615 Sum_probs=28.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.|.|+||+|||||||++.|+..++.++++.|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999988887776664
No 415
>PRK07261 topology modulation protein; Provisional
Probab=98.12 E-value=2.5e-06 Score=69.30 Aligned_cols=33 Identities=36% Similarity=0.670 Sum_probs=28.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
.++|+|++|||||||++.|+..++.+++..|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 489999999999999999999887777766653
No 416
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=1.6e-06 Score=87.81 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
-++|.+++|+|+||||||||+.+||++...-++ +|.| .+|.+.
T Consensus 814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I---~Gdi~i~G~p~ 857 (1391)
T KOG0065|consen 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYI---EGDILISGFPK 857 (1391)
T ss_pred ecCCceeehhcCCCCchHHHHHHHhcCcccceE---EeEEEECCeeC
Confidence 478999999999999999999999997543343 3444 566554
No 417
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.09 E-value=2.7e-06 Score=68.99 Aligned_cols=86 Identities=22% Similarity=0.361 Sum_probs=55.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHHH
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAVP 94 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~~ 94 (236)
-++++|+.||||||+.+.||+.++.+++..|.--- .-|+.| .+ ..+.+.-..|+..-.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI-------~e-------------IF~~~GE~~FR~~E~~ 63 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSI-------AE-------------IFEEEGEEGFRRLETE 63 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCH-------HH-------------HHHHHhHHHHHHHHHH
Confidence 48999999999999999999999999887775422 233333 01 1223334556666666
Q ss_pred HHHHHhhCCCceEEechHHH---HHHHHhc
Q 048453 95 LISEILSRDHIPFIVGGTNY---YIQALVS 121 (236)
Q Consensus 95 ~i~~~~~~~~~~il~GG~~~---~irall~ 121 (236)
.+.++.......+-.||-.. ..++.+.
T Consensus 64 vl~~l~~~~~~ViaTGGG~v~~~enr~~l~ 93 (172)
T COG0703 64 VLKELLEEDNAVIATGGGAVLSEENRNLLK 93 (172)
T ss_pred HHHHHhhcCCeEEECCCccccCHHHHHHHH
Confidence 77777776644455555322 2356664
No 418
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.07 E-value=2.7e-06 Score=67.97 Aligned_cols=32 Identities=38% Similarity=0.651 Sum_probs=27.6
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
++|+||+||||||+++.|++.++..+++.|..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccc
Confidence 47899999999999999999888777766664
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.07 E-value=3.1e-06 Score=73.74 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=35.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.-++|+||||||||||+++|++ .+++++|.+ ++|.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~-----~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR-----ILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-----ccCCCCceEEECCEEee
Confidence 5689999999999999999999 889999999 8999985
No 420
>PRK06217 hypothetical protein; Validated
Probab=98.04 E-value=4e-06 Score=68.57 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=29.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
.|+|+|++|||||||++.|+..++.++++.|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~ 35 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDY 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCce
Confidence 489999999999999999999999888877763
No 421
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.04 E-value=4.1e-06 Score=56.60 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.|.++.|+||||||||||+.+|.-
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999865
No 422
>PRK14527 adenylate kinase; Provisional
Probab=98.03 E-value=4.1e-06 Score=68.96 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=31.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
|...++.+++|+||+||||||+++.|+..++...++.
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3456789999999999999999999998887665544
No 423
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.02 E-value=5.4e-06 Score=77.32 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|--+.|+||||||||+|.|.|+|.
T Consensus 504 ~i~~G~hLLItGPNGCGKSSLfRILggL 531 (728)
T KOG0064|consen 504 QIEPGMHLLITGPNGCGKSSLFRILGGL 531 (728)
T ss_pred EecCCceEEEECCCCccHHHHHHHHhcc
Confidence 4678888999999999999999999994
No 424
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.02 E-value=2.5e-06 Score=66.22 Aligned_cols=32 Identities=47% Similarity=0.730 Sum_probs=28.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
++.++||+||||||+++.|++.++..+++.|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHH
Confidence 58999999999999999999888877777665
No 425
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.00 E-value=4.3e-06 Score=69.88 Aligned_cols=26 Identities=38% Similarity=0.671 Sum_probs=23.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
...+.+++|+||+|||||||+..|..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 45678999999999999999999976
No 426
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.00 E-value=1.4e-05 Score=74.77 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=97.8
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc-------
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN------- 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~------- 80 (236)
....+|++++|.|--|||+|-|+++|.+ .-++++|.| ++|.++.-..|...-..+ +.+++-+
T Consensus 280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG-----~~~~~~G~i~l~G~~v~~~sp~~Ai~~G-----i~~v~EDRk~~Gl~ 349 (500)
T COG1129 280 FTVRAGEILGIAGLVGAGRTELARALFG-----ARPASSGEILLDGKPVRIRSPRDAIKAG-----IAYVPEDRKSEGLV 349 (500)
T ss_pred eEEeCCcEEEEeccccCCHHHHHHHHhC-----CCcCCCceEEECCEEccCCCHHHHHHcC-----CEeCCcccccCcCc
Confidence 4567899999999999999999999999 778899999 899988433332222222 3333221
Q ss_pred cccChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhh
Q 048453 81 VEFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLY 160 (236)
Q Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~ 160 (236)
..+++.+..... .+... .+.. .+-.......++..+..+ ...+...+ ..+..||||.||
T Consensus 350 l~~sI~~Ni~l~--~l~~~-~~~~-~i~~~~e~~~~~~~~~~l--~Ik~~s~~-~~v~~LSGGNQQ-------------- 408 (500)
T COG1129 350 LDMSIAENITLA--SLRRF-SRRG-LIDRRKERALAERYIRRL--RIKTPSPE-QPIGTLSGGNQQ-------------- 408 (500)
T ss_pred CCCcHHHheehH--hhhhh-cccc-ccChHHHHHHHHHHHHhc--CcccCCcc-chhhcCCchhhh--------------
Confidence 123333332221 11111 1111 121222222333333332 23333333 337888998888
Q ss_pred hhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 161 RLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
.+-...|.+.-..+.-+|+|+-. +|--.++.|.+.+.-+-..|+.+
T Consensus 409 --------------KVvlarwL~~~p~vLilDEPTRG-IDVGAK~eIy~li~~lA~~G~ai 454 (500)
T COG1129 409 --------------KVVLARWLATDPKVLILDEPTRG-IDVGAKAEIYRLIRELAAEGKAI 454 (500)
T ss_pred --------------hHHHHHHHhcCCCEEEECCCCcC-cccchHHHHHHHHHHHHHCCCEE
Confidence 22223344455667778888766 78888888888887777777764
No 427
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.99 E-value=4.2e-06 Score=68.01 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=26.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
.++++|+||+||||||+++.|+..++...++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 4689999999999999999999877765543
No 428
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.99 E-value=7.7e-06 Score=64.28 Aligned_cols=32 Identities=22% Similarity=0.539 Sum_probs=28.4
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
++|+|++||||||+++.|+..++..+++.|..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~ 33 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL 33 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 78999999999999999999988888777643
No 429
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.98 E-value=4.4e-06 Score=69.55 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=25.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
+.....|++++|+||||||||||++.|++
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 33456689999999999999999999987
No 430
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=1.5e-05 Score=73.81 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=35.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-e---cCeec
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-Y---QGLDV 56 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~---~g~dI 56 (236)
+..+|+.++|+||+|||||||+++|++ ...++.+.+ + +|.++
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~-----l~~pd~gvv~liGergrev 206 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTLLAMLAR-----ADAFDTVVIALVGERGREV 206 (450)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhC-----CCCCCeeeeeecccCCccH
Confidence 578899999999999999999999999 667788766 3 46666
No 431
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.98 E-value=4.5e-06 Score=73.41 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+...+++|+||||||||||++.|.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999883
No 432
>PRK06547 hypothetical protein; Provisional
Probab=97.97 E-value=6.1e-06 Score=67.20 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
.....+++|.|++||||||+++.|+..++..+++.|..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~ 49 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL 49 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce
Confidence 34456889999999999999999999888888877764
No 433
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.97 E-value=5.3e-06 Score=64.57 Aligned_cols=31 Identities=35% Similarity=0.593 Sum_probs=28.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+++|+|++||||||+++.|+..++.++++.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 5799999999999999999999988887766
No 434
>PRK14530 adenylate kinase; Provisional
Probab=97.97 E-value=6.7e-06 Score=68.97 Aligned_cols=33 Identities=24% Similarity=0.557 Sum_probs=28.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+..++|+||+||||||+++.|++.++...++.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g 35 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTG 35 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEecc
Confidence 457999999999999999999999998777543
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.96 E-value=5.3e-06 Score=67.28 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
|++++|+||||||||||++.|+..++
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999543
No 436
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.96 E-value=5.1e-06 Score=68.59 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+++|+||+|||||||+++|++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999965
No 437
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.94 E-value=5.7e-06 Score=69.85 Aligned_cols=35 Identities=34% Similarity=0.617 Sum_probs=30.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceec
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQ 52 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~ 52 (236)
+++|.||+||||||+++.|++.++..++ ++|.+|+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~--~~g~~~r 38 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYL--DSGAMYR 38 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--eCchHHH
Confidence 7999999999999999999998887766 5665654
No 438
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.94 E-value=5.2e-06 Score=70.37 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=28.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQ 49 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~ 49 (236)
..+..+++|+||||||||||++.|++ .+.+++|.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~-----~l~~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA-----LLQQDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-----HhhhccCC
Confidence 35578999999999999999999999 55666664
No 439
>PRK03839 putative kinase; Provisional
Probab=97.92 E-value=7.7e-06 Score=66.52 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=28.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.++|+|++||||||+++.|++.++..+++.|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~ 33 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhh
Confidence 58999999999999999999999988877664
No 440
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.92 E-value=1.3e-05 Score=65.67 Aligned_cols=89 Identities=16% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcc-----------cc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPN-----------VE 82 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~-----------~~ 82 (236)
+.+++|+||+||||+||+..|...++.. +..-..-+|..+.+.+..+..|+++.--... ..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~--------~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~ 73 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDA--------FERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcc--------eEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence 5689999999999999999998854211 1111222334445555566555544311100 00
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEech
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGG 111 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG 111 (236)
+. +.+.--....|.+.+..++..++.+.
T Consensus 74 ~~-g~~YGt~~~~i~~~~~~~~~~ild~~ 101 (184)
T smart00072 74 YS-GNYYGTSKETIRQVAEQGKHCLLDID 101 (184)
T ss_pred Ec-CcCcccCHHHHHHHHHcCCeEEEEEC
Confidence 11 11112223456677777887777654
No 441
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=2.8e-05 Score=65.33 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCe---EEcCCCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIE---IINADSM 48 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~---ii~~dsg 48 (236)
++.-+|+|.|+|||||||+++.|+..++.+ +++.|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y 45 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY 45 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc
Confidence 345689999999999999999999998866 7777776
No 442
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.91 E-value=9.2e-06 Score=63.90 Aligned_cols=32 Identities=34% Similarity=0.658 Sum_probs=27.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+++|+|++||||||+++.|+..++..+++.|.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~ 32 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDD 32 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcc
Confidence 47899999999999999999987776665554
No 443
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.90 E-value=7e-06 Score=69.41 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+++|+||||||||||++.|++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999954
No 444
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.89 E-value=1.3e-05 Score=67.24 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=51.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCC-CeEEcCCCCceecCeecccCCCChhhhcCCceeeccccC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFP-IEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVS 78 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~-~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~ 78 (236)
.+.+..|++-+++|.||||||-++++|++-.. .-.+.+|.+. |++.|+ .+.++.+++++..+-+.++.
T Consensus 27 ~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~R-f~~idL--L~L~Pr~RRk~ig~~isMIF 95 (330)
T COG4170 27 SMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMR-FDDIDL--LRLSPRERRKLVGHNVSMIF 95 (330)
T ss_pred eeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcc-cccchh--hcCChHHhhhhhccchhhhh
Confidence 45678999999999999999999999998543 1244555432 456666 78888888888777776663
No 445
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.89 E-value=9.3e-06 Score=65.96 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=28.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+++|+||+||||||+++.|+..+++..++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d 32 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGD 32 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECCh
Confidence 47999999999999999999999988777543
No 446
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.89 E-value=1.6e-05 Score=73.11 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+|++++|+||||.||||.++.|+|.+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel 124 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGEL 124 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCcc
Confidence 5678999999999999999999999943
No 447
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.89 E-value=5.7e-06 Score=87.18 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 186 DLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 186 ~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
..|.-+|++.+. +|+.+..++.+.|..+...|.+
T Consensus 831 P~LLILDEPTsG-LD~~~~~~Ll~lL~~L~~~G~T 864 (1809)
T PRK00635 831 PTLYVLDEPTTG-LHTHDIKALIYVLQSLTHQGHT 864 (1809)
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCE
Confidence 567889999988 9999999999999988777766
No 448
>PRK13946 shikimate kinase; Provisional
Probab=97.89 E-value=1.7e-05 Score=65.05 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=30.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
...|+|+|.+||||||+++.|+..++.+++..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4579999999999999999999999998887774
No 449
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.88 E-value=9.2e-06 Score=67.92 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=31.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceec
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQ 52 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~ 52 (236)
-+|+|=||+||||||+++.||.+|++.++ |+|.+|+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yl--dTGamYR 40 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYL--DTGAMYR 40 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCee--cccHHHH
Confidence 57999999999999999999999998776 6777775
No 450
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.86 E-value=1e-05 Score=66.32 Aligned_cols=35 Identities=34% Similarity=0.652 Sum_probs=27.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceec
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQ 52 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~ 52 (236)
.+.|+||+||||||+++.|+.+++...+ |.|.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl--stgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL--DTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE--cHhHHhH
Confidence 4799999999999999999998775554 4444443
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.85 E-value=8.7e-06 Score=67.63 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=26.1
Q ss_pred ccccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 7 KQRALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 7 ~~~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.+.....|++++|+||||||||||+++|++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 345566789999999999999999999995
No 452
>PRK08233 hypothetical protein; Provisional
Probab=97.84 E-value=1.6e-05 Score=64.16 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+.+++|.|++|||||||+..|+..++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999765
No 453
>PLN02199 shikimate kinase
Probab=97.82 E-value=2.2e-05 Score=69.00 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce--ecCeecccCCCChhhhcCCceeeccccCcccccChhHHH
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV--YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFR 89 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i--~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~ 89 (236)
.++..|+|+|..||||||+++.||..++..++..|.... +.|..| .+ ....+....|.
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI-------~e-------------If~~~GE~~FR 159 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSV-------AE-------------IFVHHGENFFR 159 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCH-------HH-------------HHHHhCHHHHH
Confidence 357789999999999999999999999999988876421 123332 11 11234445666
Q ss_pred HHHHHHHHHHhhCCCceEEech
Q 048453 90 DSAVPLISEILSRDHIPFIVGG 111 (236)
Q Consensus 90 ~~~~~~i~~~~~~~~~~il~GG 111 (236)
..-.+.+.++.......|-.||
T Consensus 160 ~~E~e~L~~L~~~~~~VIStGG 181 (303)
T PLN02199 160 GKETDALKKLSSRYQVVVSTGG 181 (303)
T ss_pred HHHHHHHHHHHhcCCEEEECCC
Confidence 6656667776554444444565
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.82 E-value=1.7e-05 Score=59.62 Aligned_cols=26 Identities=42% Similarity=0.746 Sum_probs=23.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+..+.|+||+||||||+++.|+..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 57899999999999999999999543
No 455
>PRK06762 hypothetical protein; Provisional
Probab=97.82 E-value=1.3e-05 Score=64.27 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=22.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+.+++|+|++||||||+++.|+..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 456
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.81 E-value=1.5e-05 Score=65.26 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+.+|+||||||||+++.+|.-.+
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999999997643
No 457
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.81 E-value=1.4e-05 Score=64.69 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+++|.+++|+|++||||||+++.|++.+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999998653
No 458
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=1.8e-05 Score=63.04 Aligned_cols=35 Identities=29% Similarity=0.645 Sum_probs=31.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
..++.|+|++||||||++++|+..++++++..|..
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~ 46 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL 46 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccC
Confidence 34889999999999999999999999998777764
No 459
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.80 E-value=1.7e-05 Score=65.43 Aligned_cols=33 Identities=36% Similarity=0.401 Sum_probs=28.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC-CCeEEcCCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF-PIEIINADSM 48 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l-~~~ii~~dsg 48 (236)
+++|.|++|||||||++.|+..+ +..+++.|..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccc
Confidence 58999999999999999999987 5677777765
No 460
>PRK13947 shikimate kinase; Provisional
Probab=97.79 E-value=1.8e-05 Score=63.56 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=29.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
-++|+|++||||||+++.||..++..++..|..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~ 35 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE 35 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence 389999999999999999999999988877753
No 461
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.79 E-value=2.1e-05 Score=74.15 Aligned_cols=41 Identities=24% Similarity=0.540 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCe
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGL 54 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~ 54 (236)
.++.+++|.||+||||||+++.|++.++..++ |+|.+|+..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~--d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYL--DTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEe--cCCceehHH
Confidence 36789999999999999999999999886655 555667653
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.79 E-value=1.5e-05 Score=60.54 Aligned_cols=32 Identities=34% Similarity=0.619 Sum_probs=26.4
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
+.|.||+|+||||+++.++..++.+++..+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 57999999999999999999887666554444
No 463
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.79 E-value=1.6e-05 Score=69.33 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=25.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
+++|+|+||||||||++.|++ ++.++++.++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~-----ll~~~~~~vi 31 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS-----LFGSDLVTVI 31 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH-----hhCCCceEEE
Confidence 589999999999999999999 5455555443
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=3.7e-05 Score=70.59 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
....|+|+||||.|||||++.|.+ -+.|..|..
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~G-----kl~P~~GE~ 644 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIG-----KLDPNDGEL 644 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhc-----CCCCCcchh
Confidence 345799999999999999999999 555666644
No 465
>PRK14532 adenylate kinase; Provisional
Probab=97.77 E-value=2.2e-05 Score=64.22 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=27.7
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
++|+||+||||||+++.||..+++..++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d 33 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGD 33 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcH
Confidence 7899999999999999999999988876543
No 466
>PLN02200 adenylate kinase family protein
Probab=97.77 E-value=2.9e-05 Score=66.26 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
++...+++|+|++||||||+++.|+..++...++.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~ 74 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSA 74 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEc
Confidence 34457899999999999999999999888776654
No 467
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.76 E-value=2.3e-05 Score=63.58 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCe
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIE 41 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ 41 (236)
+|.+++|.|++||||||+++.|+..++..
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 47899999999999999999999865543
No 468
>PLN02772 guanylate kinase
Probab=97.76 E-value=2.6e-05 Score=71.01 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhH-----
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKE----- 87 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~----- 87 (236)
.+++++|+||||||||||++.|...++..+ ..-...+|.++.+.|..+..++|+..-..........
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~--------~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~ 205 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFA 205 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccc--------cccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceee
Confidence 567999999999999999999987432211 1112334556666677665555443111111111111
Q ss_pred -----HHHHHHHHHHHHhhCCCceEE
Q 048453 88 -----FRDSAVPLISEILSRDHIPFI 108 (236)
Q Consensus 88 -----~~~~~~~~i~~~~~~~~~~il 108 (236)
++--..+.++.++..++..++
T Consensus 206 e~~Gn~YGTsk~~V~~vl~~Gk~vIL 231 (398)
T PLN02772 206 SVHGNLYGTSIEAVEVVTDSGKRCIL 231 (398)
T ss_pred eecCccccccHHHHHHHHHhCCcEEE
Confidence 111234567777778887775
No 469
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.74 E-value=1.5e-05 Score=65.73 Aligned_cols=24 Identities=46% Similarity=0.702 Sum_probs=22.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+|+|.||+|||||||++.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999655
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.73 E-value=3.4e-05 Score=60.24 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPI 40 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~ 40 (236)
.++|.+++|.|+.|||||||++.+++.++.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 467899999999999999999999998774
No 471
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.73 E-value=2.1e-05 Score=66.11 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHh
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~ 36 (236)
++++|+||||||||||+++|..
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~ 47 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLF 47 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999985
No 472
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.72 E-value=2.2e-05 Score=62.87 Aligned_cols=36 Identities=28% Similarity=0.618 Sum_probs=30.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQG 53 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g 53 (236)
++.|.||+||||||+++.||..++.++++ +|.+|++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs--aG~iFR~ 37 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS--AGTIFRE 37 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee--ccHHHHH
Confidence 58999999999999999999999999885 5555643
No 473
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.72 E-value=2.8e-05 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=20.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+++|+|++||||||+++.|+..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999963
No 474
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.71 E-value=2.6e-05 Score=63.14 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
++|++++|+|++||||||+++.|++.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999854
No 475
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.70 E-value=4e-05 Score=70.85 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=26.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
....+|++++|+|+||||||||+++|++.
T Consensus 150 l~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 150 LTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred EeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 45678999999999999999999999993
No 476
>PTZ00301 uridine kinase; Provisional
Probab=97.70 E-value=2.5e-05 Score=65.68 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=21.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+|+|.|+||||||||+..|+..+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 589999999999999999887654
No 477
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.70 E-value=2.5e-05 Score=64.82 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.3
Q ss_pred CccccCCCC-CEEEEEcCCchhHHHHHHHHH
Q 048453 6 SKQRALNKP-NLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 6 ~~~~~~~~g-~ii~IiGpsGsGKSTL~~~La 35 (236)
+.+.....| ++++|+||||||||||++.|+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 345556677 589999999999999999998
No 478
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.70 E-value=2.7e-05 Score=62.20 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=27.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+|+|.|++||||||+++.|++.++.++++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence 6899999999999999999998888877654
No 479
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.69 E-value=6.4e-05 Score=75.68 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.5
Q ss_pred HHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 187 LLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 187 ~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
.|.-+|++++. +|+.+..++.+.|..+...|.+
T Consensus 853 ~llILDEPtsG-LD~~~~~~L~~~L~~l~~~G~T 885 (943)
T PRK00349 853 TLYILDEPTTG-LHFEDIRKLLEVLHRLVDKGNT 885 (943)
T ss_pred eEEEEECCCCC-CCHHHHHHHHHHHHHHHhCCCE
Confidence 57789999988 9999999999999888766765
No 480
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.68 E-value=4.3e-05 Score=65.04 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=29.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
.++|+||+||||||+++.|+..++...++.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~gdl 40 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMGNI 40 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECChH
Confidence 389999999999999999999999888876554
No 481
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.68 E-value=3.5e-05 Score=62.96 Aligned_cols=31 Identities=32% Similarity=0.649 Sum_probs=27.8
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
|+|+||+||||||+++.|+..++...++.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~ 32 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGD 32 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 7899999999999999999999888877654
No 482
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.68 E-value=2.8e-05 Score=69.28 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=32.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
..++.+++|+|||||||||++..||. .+...++.| +-+.|.
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~-----~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAH-----KYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH-----HHHhcCCeEEEEecCc
Confidence 35689999999999999999999999 445555666 444454
No 483
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.68 E-value=4e-05 Score=64.14 Aligned_cols=31 Identities=42% Similarity=0.477 Sum_probs=28.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
-+++|+|++||||||+++.|.+ +++.++++|
T Consensus 6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 4789999999999999999997 788888887
No 484
>PRK04182 cytidylate kinase; Provisional
Probab=97.68 E-value=2.9e-05 Score=62.53 Aligned_cols=30 Identities=37% Similarity=0.627 Sum_probs=27.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
+|+|+|++||||||+++.|+..++.++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 689999999999999999999998887753
No 485
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.66 E-value=3.9e-05 Score=61.70 Aligned_cols=34 Identities=21% Similarity=0.498 Sum_probs=29.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
..++|+|++||||||+++.||..++..+++.|..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 3589999999999999999999999888877654
No 486
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.66 E-value=4.1e-05 Score=63.49 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=30.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
+++|+|+.||||||+++.++..+++.++++|..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 699999999999999999999889999988765
No 487
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.65 E-value=5.2e-05 Score=67.32 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=33.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+.+.++..++|+|++||||||+++.|+..++..++..|
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34678899999999999999999999999998887555
No 488
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.65 E-value=2.7e-05 Score=62.70 Aligned_cols=27 Identities=37% Similarity=0.660 Sum_probs=22.8
Q ss_pred EcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 20 MGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 20 iGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+|+||||||||++.|++.++...+..|
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 699999999999999998876665554
No 489
>PRK14531 adenylate kinase; Provisional
Probab=97.64 E-value=4.6e-05 Score=62.35 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=27.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
.++|+||+||||||+++.|+..++...++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 589999999999999999999998887764
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.63 E-value=0.00011 Score=66.54 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++.+++|+|||||||||++++|++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999983
No 491
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.63 E-value=4.3e-05 Score=63.27 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++.+++|+|++|||||||++.|++.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999984
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.62 E-value=4.2e-05 Score=67.82 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
...+..++|+||||||||||+++|++ .++++.+.+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~-----~~~~~~~iv 175 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVD-----EIPKDERII 175 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHc-----cCCccccEE
Confidence 45789999999999999999999999 566666654
No 493
>PRK00625 shikimate kinase; Provisional
Probab=97.61 E-value=4.2e-05 Score=62.31 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=29.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
.++|+|..||||||+++.|+..++..+++.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHH
Confidence 489999999999999999999999888877754
No 494
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.59 E-value=6.1e-05 Score=71.83 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=31.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
...++|+|..||||||+.+.||..++.+++..|..
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ 40 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE 40 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 34689999999999999999999999999988874
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=97.59 E-value=0.00012 Score=67.59 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=34.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC---Cce-ecCeec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS---MQV-YQGLDV 56 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds---g~i-~~g~dI 56 (236)
....+|+.++|+|++|+|||||+++|++ ...+|. |.| .+|.++
T Consensus 146 l~i~~Gq~i~I~G~sG~GKTTLl~~i~~-----~~~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 146 LTCGVGQRMGIFASAGCGKTSLMNMLIE-----HSEADVFVIGLIGERGREV 192 (428)
T ss_pred eeEecCCEEEEECCCCCChhHHHHHHhc-----CCCCCeEEEEEEeeCCccH
Confidence 3567899999999999999999999999 444444 445 577766
No 496
>PRK01184 hypothetical protein; Provisional
Probab=97.58 E-value=5.6e-05 Score=61.59 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=25.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
+++|+|++||||||+++ ++..+++++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 79999999999999987 678888877765
No 497
>PRK02496 adk adenylate kinase; Provisional
Probab=97.58 E-value=4.3e-05 Score=62.28 Aligned_cols=31 Identities=42% Similarity=0.661 Sum_probs=26.7
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.++|+||+||||||+++.|++.++...++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~ 33 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTG 33 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhH
Confidence 4899999999999999999998887766543
No 498
>PLN02796 D-glycerate 3-kinase
Probab=97.57 E-value=5.2e-05 Score=68.03 Aligned_cols=25 Identities=36% Similarity=0.600 Sum_probs=22.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.-+++|+|++|||||||++.|.+.+
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHh
Confidence 3569999999999999999999944
No 499
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.57 E-value=6.9e-05 Score=61.99 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=29.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
.+++|+|+.||||||+++.++. ++..++++|..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 3799999999999999999988 88888888763
No 500
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.57 E-value=5.9e-05 Score=66.12 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=28.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcC-CCeEEcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHF-PIEIINADS 47 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l-~~~ii~~ds 47 (236)
.+++++|++||||||+++.|+..+ +..+++.|.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~ 36 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDD 36 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccH
Confidence 478999999999999999999988 677776655
Done!