Query 048453
Match_columns 236
No_of_seqs 325 out of 2692
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3foz_A TRNA delta(2)-isopenten 100.0 5E-43 1.7E-47 306.6 13.9 187 12-234 8-195 (316)
2 3exa_A TRNA delta(2)-isopenten 100.0 1.2E-42 4.2E-47 304.6 15.7 182 14-229 3-184 (322)
3 3eph_A TRNA isopentenyltransfe 100.0 3.1E-40 1E-44 298.2 12.1 186 14-234 2-187 (409)
4 3crm_A TRNA delta(2)-isopenten 100.0 3.8E-37 1.3E-41 271.6 9.9 179 15-228 6-184 (323)
5 3d3q_A TRNA delta(2)-isopenten 100.0 3.5E-34 1.2E-38 254.2 14.0 180 15-228 8-190 (340)
6 3a8t_A Adenylate isopentenyltr 99.9 2E-24 6.9E-29 191.1 11.1 111 13-123 39-150 (339)
7 3tif_A Uncharacterized ABC tra 99.6 6.7E-18 2.3E-22 142.7 -1.1 51 8-65 25-76 (235)
8 2ze6_A Isopentenyl transferase 99.6 3.9E-16 1.3E-20 133.0 8.9 107 15-122 2-109 (253)
9 3gfo_A Cobalt import ATP-bindi 99.6 1.3E-17 4.3E-22 144.2 -2.6 162 9-221 29-197 (275)
10 4g1u_C Hemin import ATP-bindin 99.6 3.8E-17 1.3E-21 140.6 0.1 155 9-218 32-197 (266)
11 2olj_A Amino acid ABC transpor 99.6 8.8E-17 3E-21 138.1 2.2 44 9-57 45-89 (263)
12 3rlf_A Maltose/maltodextrin im 99.6 8.4E-17 2.9E-21 144.7 1.5 45 8-57 23-68 (381)
13 2pcj_A ABC transporter, lipopr 99.6 2.8E-17 9.4E-22 137.9 -1.9 164 8-220 24-192 (224)
14 3tui_C Methionine import ATP-b 99.6 6.6E-17 2.3E-21 144.7 0.4 51 8-65 48-99 (366)
15 3fvq_A Fe(3+) IONS import ATP- 99.6 8.7E-17 3E-21 143.6 -0.1 45 8-57 24-69 (359)
16 1vpl_A ABC transporter, ATP-bi 99.6 1.4E-16 4.9E-21 136.2 0.6 45 8-57 35-80 (256)
17 2it1_A 362AA long hypothetical 99.6 1.8E-16 6.1E-21 141.9 0.8 45 8-57 23-68 (362)
18 1b0u_A Histidine permease; ABC 99.6 2.2E-16 7.6E-21 135.4 0.5 44 9-57 27-71 (262)
19 2ihy_A ABC transporter, ATP-bi 99.6 6.4E-17 2.2E-21 140.1 -3.2 166 9-221 42-214 (279)
20 1oxx_K GLCV, glucose, ABC tran 99.6 4E-16 1.4E-20 139.3 1.7 46 8-58 25-71 (353)
21 1z47_A CYSA, putative ABC-tran 99.6 1.9E-16 6.4E-21 141.4 -0.7 45 8-57 35-80 (355)
22 2qi9_C Vitamin B12 import ATP- 99.6 9.3E-16 3.2E-20 130.7 3.4 153 9-220 21-185 (249)
23 2yyz_A Sugar ABC transporter, 99.6 2.6E-16 8.9E-21 140.7 -0.2 45 8-57 23-68 (359)
24 1v43_A Sugar-binding transport 99.6 2.5E-16 8.6E-21 141.4 -0.5 45 8-57 31-76 (372)
25 1g6h_A High-affinity branched- 99.6 1.6E-16 5.6E-21 135.8 -1.7 163 8-220 27-205 (257)
26 3d31_A Sulfate/molybdate ABC t 99.6 9.4E-16 3.2E-20 136.6 3.1 45 8-57 20-65 (348)
27 1g29_1 MALK, maltose transport 99.6 2.5E-16 8.4E-21 141.5 -0.9 46 8-58 23-69 (372)
28 2d2e_A SUFC protein; ABC-ATPas 99.5 7.7E-16 2.6E-20 131.1 1.4 164 9-220 24-195 (250)
29 1ji0_A ABC transporter; ATP bi 99.5 2.2E-16 7.5E-21 133.7 -2.3 44 9-57 27-71 (240)
30 2onk_A Molybdate/tungstate ABC 99.5 1.2E-15 4.1E-20 129.3 1.6 43 9-57 20-63 (240)
31 1sgw_A Putative ABC transporte 99.5 2.1E-15 7.1E-20 125.8 3.0 151 9-220 30-185 (214)
32 2zu0_C Probable ATP-dependent 99.5 8E-16 2.7E-20 132.3 0.0 45 8-57 40-87 (267)
33 3nh6_A ATP-binding cassette SU 99.5 1.3E-14 4.6E-19 127.0 6.0 117 9-136 75-225 (306)
34 2ff7_A Alpha-hemolysin translo 99.5 8.7E-15 3E-19 124.5 4.5 118 8-136 29-180 (247)
35 1mv5_A LMRA, multidrug resista 99.5 1.1E-14 3.8E-19 123.4 4.5 45 8-57 22-67 (243)
36 2yz2_A Putative ABC transporte 99.5 2.1E-15 7.1E-20 129.6 -0.1 45 8-57 27-72 (266)
37 2ixe_A Antigen peptide transpo 99.5 1.8E-14 6.2E-19 124.1 3.9 118 8-136 39-191 (271)
38 2pjz_A Hypothetical protein ST 99.4 1.3E-13 4.5E-18 118.3 7.1 112 8-135 25-162 (263)
39 3gd7_A Fusion complex of cysti 99.4 3.1E-14 1.1E-18 128.5 1.8 115 8-136 41-190 (390)
40 2ghi_A Transport protein; mult 99.4 1.9E-13 6.7E-18 116.9 6.6 117 8-136 40-190 (260)
41 2nq2_C Hypothetical ABC transp 99.4 3.4E-14 1.2E-18 121.2 1.8 38 9-51 26-63 (253)
42 3b5x_A Lipid A export ATP-bind 99.4 3.4E-13 1.2E-17 127.5 8.0 45 8-57 363-408 (582)
43 3b60_A Lipid A export ATP-bind 99.4 3.9E-13 1.3E-17 127.1 5.7 117 9-136 364-515 (582)
44 2yl4_A ATP-binding cassette SU 99.3 4.4E-13 1.5E-17 127.0 4.7 117 9-136 365-518 (595)
45 3qf4_B Uncharacterized ABC tra 99.3 2.9E-13 9.9E-18 128.4 2.5 45 8-57 375-420 (598)
46 4a82_A Cystic fibrosis transme 99.3 3.3E-13 1.1E-17 127.5 2.6 44 9-57 362-406 (578)
47 3qf4_A ABC transporter, ATP-bi 99.3 3E-13 1E-17 128.0 1.3 121 9-136 364-514 (587)
48 4f4c_A Multidrug resistance pr 99.3 1.1E-12 3.7E-17 134.3 5.4 121 9-136 1100-1252(1321)
49 2pze_A Cystic fibrosis transme 99.3 1.4E-12 4.7E-17 109.5 4.4 40 9-53 29-69 (229)
50 2cbz_A Multidrug resistance-as 99.3 5.6E-13 1.9E-17 112.5 1.5 118 8-136 25-162 (237)
51 4f4c_A Multidrug resistance pr 99.2 7.7E-12 2.6E-16 128.0 8.0 121 9-136 439-589 (1321)
52 2bbs_A Cystic fibrosis transme 99.2 3.1E-12 1.1E-16 111.1 3.4 40 9-53 59-99 (290)
53 3ozx_A RNAse L inhibitor; ATP 99.2 1.8E-12 6.1E-17 121.5 1.6 41 11-56 291-332 (538)
54 1yqt_A RNAse L inhibitor; ATP- 99.2 1.9E-12 6.3E-17 121.5 0.8 36 10-50 43-78 (538)
55 1yqt_A RNAse L inhibitor; ATP- 99.2 4E-12 1.4E-16 119.2 2.3 36 11-51 309-344 (538)
56 3bk7_A ABC transporter ATP-bin 99.2 2.3E-12 8E-17 122.4 0.5 36 10-50 113-148 (607)
57 3ozx_A RNAse L inhibitor; ATP 99.2 6.8E-12 2.3E-16 117.6 3.6 35 11-50 22-56 (538)
58 3bk7_A ABC transporter ATP-bin 99.2 2.6E-12 8.9E-17 122.0 0.1 36 11-51 379-414 (607)
59 3g5u_A MCG1178, multidrug resi 99.2 9.5E-12 3.3E-16 127.0 4.1 117 9-136 411-561 (1284)
60 2qmh_A HPR kinase/phosphorylas 99.1 1.9E-11 6.4E-16 100.5 2.2 72 13-91 33-111 (205)
61 3g5u_A MCG1178, multidrug resi 99.1 6.6E-11 2.2E-15 120.9 6.2 118 8-136 1053-1206(1284)
62 3j16_B RLI1P; ribosome recycli 99.1 6.7E-11 2.3E-15 112.3 5.5 35 11-50 100-134 (608)
63 3j16_B RLI1P; ribosome recycli 99.0 8.2E-11 2.8E-15 111.7 3.8 114 12-136 376-502 (608)
64 3ux8_A Excinuclease ABC, A sub 98.9 4.1E-11 1.4E-15 115.0 -2.0 32 188-220 225-256 (670)
65 3tau_A Guanylate kinase, GMP k 98.8 5.7E-10 2E-14 91.7 1.2 98 12-117 6-116 (208)
66 3ney_A 55 kDa erythrocyte memb 98.8 1.2E-09 4E-14 89.8 2.4 94 8-109 13-116 (197)
67 1htw_A HI0065; nucleotide-bind 98.8 1.4E-09 4.8E-14 86.2 2.3 42 10-57 29-71 (158)
68 4gp7_A Metallophosphoesterase; 98.8 8.9E-10 3E-14 87.9 1.1 28 9-36 4-31 (171)
69 1z6g_A Guanylate kinase; struc 98.7 4.7E-09 1.6E-13 86.9 4.1 46 8-61 17-62 (218)
70 1tq4_A IIGP1, interferon-induc 98.7 5.6E-09 1.9E-13 94.8 3.9 36 16-56 71-107 (413)
71 1s96_A Guanylate kinase, GMP k 98.7 1.3E-08 4.3E-13 84.8 4.6 28 10-37 12-39 (219)
72 2iw3_A Elongation factor 3A; a 98.7 1.5E-08 5.2E-13 100.4 6.0 28 9-36 456-483 (986)
73 3tr0_A Guanylate kinase, GMP k 98.7 1.5E-08 5.2E-13 81.9 4.5 30 9-38 2-31 (205)
74 3lnc_A Guanylate kinase, GMP k 98.7 1.2E-08 4.1E-13 84.7 3.9 55 6-69 19-74 (231)
75 1zp6_A Hypothetical protein AT 98.7 9.7E-09 3.3E-13 82.3 3.2 42 8-56 3-45 (191)
76 1znw_A Guanylate kinase, GMP k 98.6 2.4E-08 8.2E-13 81.7 4.3 29 10-38 16-44 (207)
77 1kgd_A CASK, peripheral plasma 98.6 8.7E-09 3E-13 82.6 1.5 27 12-38 3-29 (180)
78 3b85_A Phosphate starvation-in 98.6 8E-09 2.7E-13 85.3 0.4 35 11-51 19-53 (208)
79 4eun_A Thermoresistant glucoki 98.5 3E-08 1E-12 80.6 3.3 36 8-43 23-58 (200)
80 4aby_A DNA repair protein RECN 98.5 1.3E-07 4.5E-12 84.9 7.8 29 10-39 57-85 (415)
81 3ux8_A Excinuclease ABC, A sub 98.5 8.5E-09 2.9E-13 98.8 -0.0 33 188-221 567-599 (670)
82 3b9q_A Chloroplast SRP recepto 98.5 2.7E-08 9.2E-13 86.7 3.0 44 8-56 94-138 (302)
83 2eyu_A Twitching motility prot 98.5 1.5E-08 5.3E-13 86.4 1.0 41 11-56 22-64 (261)
84 3euj_A Chromosome partition pr 98.5 3.8E-08 1.3E-12 90.9 3.3 44 9-58 25-69 (483)
85 1rj9_A FTSY, signal recognitio 98.5 4.1E-08 1.4E-12 85.6 3.3 40 13-57 101-141 (304)
86 3asz_A Uridine kinase; cytidin 98.5 2.6E-08 9E-13 81.2 1.9 38 10-47 2-41 (211)
87 3vaa_A Shikimate kinase, SK; s 98.5 3E-08 1E-12 80.5 1.8 40 8-47 19-58 (199)
88 1kag_A SKI, shikimate kinase I 98.5 4.7E-08 1.6E-12 77.0 2.7 34 12-45 2-35 (173)
89 1lvg_A Guanylate kinase, GMP k 98.5 3.9E-08 1.3E-12 80.1 2.1 28 11-38 1-28 (198)
90 2og2_A Putative signal recogni 98.4 6.3E-08 2.2E-12 86.3 3.0 45 7-56 150-195 (359)
91 3c8u_A Fructokinase; YP_612366 98.4 5E-08 1.7E-12 79.8 1.3 41 11-56 19-63 (208)
92 3a00_A Guanylate kinase, GMP k 98.4 9.1E-08 3.1E-12 76.9 2.7 25 14-38 1-25 (186)
93 3e70_C DPA, signal recognition 98.4 7.9E-08 2.7E-12 84.7 2.1 42 11-57 126-168 (328)
94 3sop_A Neuronal-specific septi 98.4 7.8E-08 2.7E-12 82.4 1.9 36 16-56 4-40 (270)
95 1knq_A Gluconate kinase; ALFA/ 98.4 1.7E-07 5.7E-12 74.1 3.3 35 12-46 6-40 (175)
96 2i3b_A HCR-ntpase, human cance 98.3 9.5E-08 3.3E-12 77.7 1.3 36 14-56 1-37 (189)
97 1sq5_A Pantothenate kinase; P- 98.3 1.6E-07 5.6E-12 81.7 2.7 40 11-55 77-122 (308)
98 2pt7_A CAG-ALFA; ATPase, prote 98.3 1.1E-07 3.8E-12 83.7 1.6 40 11-55 168-208 (330)
99 2yhs_A FTSY, cell division pro 98.3 2E-07 6.9E-12 86.2 3.2 44 8-56 287-331 (503)
100 2j41_A Guanylate kinase; GMP, 98.3 2.1E-07 7.1E-12 75.2 2.8 30 9-38 1-30 (207)
101 4e22_A Cytidylate kinase; P-lo 98.3 1.4E-07 4.6E-12 79.8 1.6 38 12-51 25-62 (252)
102 1u0l_A Probable GTPase ENGC; p 98.3 2.3E-07 7.9E-12 80.5 3.0 42 12-58 167-212 (301)
103 2gza_A Type IV secretion syste 98.3 2.1E-07 7.3E-12 82.8 2.9 39 10-53 171-210 (361)
104 2npi_A Protein CLP1; CLP1-PCF1 98.3 1.2E-07 4E-12 87.2 1.1 39 10-53 134-175 (460)
105 3trf_A Shikimate kinase, SK; a 98.3 2.1E-07 7.2E-12 74.1 2.0 35 14-48 5-39 (185)
106 3aez_A Pantothenate kinase; tr 98.3 2.6E-07 9E-12 80.8 2.6 33 11-48 87-119 (312)
107 1y63_A LMAJ004144AAA protein; 98.3 3.3E-07 1.1E-11 73.5 3.0 42 6-47 2-44 (184)
108 1qhl_A Protein (cell division 98.3 5.8E-08 2E-12 81.3 -1.6 37 15-56 28-65 (227)
109 2v9p_A Replication protein E1; 98.3 3.4E-07 1.2E-11 79.9 3.1 29 9-37 121-149 (305)
110 2vf7_A UVRA2, excinuclease ABC 98.3 4.1E-08 1.4E-12 96.2 -3.3 34 187-221 753-786 (842)
111 2ehv_A Hypothetical protein PH 98.3 2.9E-07 9.8E-12 76.4 2.3 26 10-35 26-51 (251)
112 2f1r_A Molybdopterin-guanine d 98.2 2.2E-07 7.7E-12 74.3 1.5 37 15-56 3-43 (171)
113 1cke_A CK, MSSA, protein (cyti 98.2 3.6E-07 1.2E-11 75.0 2.7 36 14-51 5-40 (227)
114 1t9h_A YLOQ, probable GTPase E 98.2 4E-07 1.4E-11 79.5 3.1 45 9-58 168-216 (307)
115 2iw3_A Elongation factor 3A; a 98.2 2.6E-07 8.7E-12 91.7 2.0 39 9-52 694-733 (986)
116 1p9r_A General secretion pathw 98.2 3E-07 1E-11 83.5 2.2 40 12-56 165-205 (418)
117 2dpy_A FLII, flagellum-specifi 98.2 3E-07 1E-11 84.0 2.2 41 9-54 152-193 (438)
118 2obl_A ESCN; ATPase, hydrolase 98.2 3E-07 1E-11 81.6 2.0 42 9-55 66-108 (347)
119 2jeo_A Uridine-cytidine kinase 98.2 4.2E-07 1.4E-11 76.2 2.6 32 8-39 19-50 (245)
120 1ex7_A Guanylate kinase; subst 98.2 2.7E-07 9.1E-12 74.9 1.1 52 16-75 3-54 (186)
121 4a74_A DNA repair and recombin 98.2 3.8E-07 1.3E-11 74.7 1.9 27 10-36 21-47 (231)
122 2qm8_A GTPase/ATPase; G protei 98.2 4.7E-07 1.6E-11 79.9 2.6 44 10-58 51-95 (337)
123 2qt1_A Nicotinamide riboside k 98.2 7E-07 2.4E-11 72.5 3.4 39 10-48 17-56 (207)
124 3cm0_A Adenylate kinase; ATP-b 98.2 4.5E-07 1.5E-11 72.1 1.7 35 12-46 2-36 (186)
125 2bbw_A Adenylate kinase 4, AK4 98.2 3.9E-07 1.3E-11 76.3 1.3 40 13-54 26-66 (246)
126 1nij_A Hypothetical protein YJ 98.2 6.6E-07 2.2E-11 78.2 2.8 45 13-57 3-51 (318)
127 1rz3_A Hypothetical protein rb 98.2 5.3E-07 1.8E-11 73.3 1.8 42 10-56 18-60 (201)
128 3kb2_A SPBC2 prophage-derived 98.2 1.1E-06 3.6E-11 68.7 3.5 32 16-47 3-34 (173)
129 3nwj_A ATSK2; P loop, shikimat 98.1 6.1E-07 2.1E-11 76.0 2.1 34 14-47 48-81 (250)
130 3t61_A Gluconokinase; PSI-biol 98.1 8.7E-07 3E-11 71.7 2.9 34 14-47 18-51 (202)
131 2bdt_A BH3686; alpha-beta prot 98.1 6.7E-07 2.3E-11 71.5 2.1 24 14-37 2-25 (189)
132 2ewv_A Twitching motility prot 98.1 4.9E-07 1.7E-11 80.8 1.1 41 11-56 133-175 (372)
133 3uie_A Adenylyl-sulfate kinase 98.1 1.1E-06 3.9E-11 71.1 3.2 27 11-37 22-48 (200)
134 3iij_A Coilin-interacting nucl 98.1 1.1E-06 3.6E-11 69.8 2.7 38 9-46 6-43 (180)
135 2rhm_A Putative kinase; P-loop 98.1 9.4E-07 3.2E-11 70.5 2.1 36 11-46 2-37 (193)
136 1lw7_A Transcriptional regulat 98.1 6.3E-07 2.2E-11 79.6 1.1 36 11-51 165-206 (365)
137 1jjv_A Dephospho-COA kinase; P 98.1 1.4E-06 4.7E-11 70.7 2.9 32 15-47 3-34 (206)
138 3szr_A Interferon-induced GTP- 98.1 1.5E-06 5.3E-11 82.4 3.2 36 16-56 47-84 (608)
139 2oap_1 GSPE-2, type II secreti 98.0 1.5E-06 5.2E-11 80.8 2.8 39 11-54 257-296 (511)
140 3pih_A Uvrabc system protein A 98.0 6.5E-07 2.2E-11 88.4 0.4 32 188-220 829-860 (916)
141 1ye8_A Protein THEP1, hypothet 98.0 1.8E-06 6.3E-11 69.2 2.9 24 16-39 2-25 (178)
142 2c95_A Adenylate kinase 1; tra 98.0 1.3E-06 4.5E-11 69.8 2.0 37 11-47 6-42 (196)
143 3jvv_A Twitching mobility prot 98.0 9.7E-07 3.3E-11 78.5 1.2 36 11-51 120-156 (356)
144 2if2_A Dephospho-COA kinase; a 98.0 1.8E-06 6.1E-11 69.8 2.7 31 16-47 3-33 (204)
145 2vp4_A Deoxynucleoside kinase; 98.0 1.5E-06 5.1E-11 72.1 2.1 28 10-37 16-43 (230)
146 1tf7_A KAIC; homohexamer, hexa 98.0 1.3E-06 4.4E-11 81.4 1.9 41 10-55 35-78 (525)
147 1cr0_A DNA primase/helicase; R 98.0 1.5E-06 5E-11 74.6 2.0 40 10-54 31-72 (296)
148 2qor_A Guanylate kinase; phosp 98.0 2.5E-06 8.6E-11 69.3 3.2 29 11-39 9-37 (204)
149 1qhx_A CPT, protein (chloramph 98.0 3.5E-06 1.2E-10 66.4 4.0 30 14-43 3-32 (178)
150 1via_A Shikimate kinase; struc 98.0 1.6E-06 5.4E-11 68.6 1.8 32 16-47 6-37 (175)
151 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.1E-06 3.9E-11 71.6 1.0 26 11-36 20-45 (235)
152 1zd8_A GTP:AMP phosphotransfer 98.0 2.3E-06 7.8E-11 70.6 2.8 37 10-46 3-39 (227)
153 2kjq_A DNAA-related protein; s 98.0 1E-05 3.5E-10 62.9 6.3 25 13-37 35-59 (149)
154 2rcn_A Probable GTPase ENGC; Y 98.0 2.9E-06 9.9E-11 75.5 3.4 40 12-56 213-255 (358)
155 1vht_A Dephospho-COA kinase; s 98.0 2.9E-06 9.8E-11 69.4 3.1 33 13-46 3-35 (218)
156 1qf9_A UMP/CMP kinase, protein 98.0 2.4E-06 8.2E-11 67.8 2.5 33 14-46 6-38 (194)
157 2iyv_A Shikimate kinase, SK; t 97.9 2.3E-06 7.8E-11 68.0 1.8 33 15-47 3-35 (184)
158 2yv5_A YJEQ protein; hydrolase 97.9 5.6E-06 1.9E-10 71.8 4.4 42 11-58 162-207 (302)
159 2bwj_A Adenylate kinase 5; pho 97.9 1.2E-06 4.1E-11 70.2 -0.1 37 11-47 9-45 (199)
160 1tev_A UMP-CMP kinase; ploop, 97.9 2.9E-06 1E-10 67.4 2.1 34 14-47 3-36 (196)
161 3kta_A Chromosome segregation 97.9 4E-06 1.4E-10 66.4 2.9 27 11-38 24-50 (182)
162 2pez_A Bifunctional 3'-phospho 97.9 3.6E-06 1.2E-10 66.7 2.5 27 12-38 3-29 (179)
163 1ukz_A Uridylate kinase; trans 97.9 5.5E-06 1.9E-10 66.8 3.2 36 12-47 13-48 (203)
164 1q3t_A Cytidylate kinase; nucl 97.9 4.6E-06 1.6E-10 69.3 2.8 36 11-46 13-48 (236)
165 3cr8_A Sulfate adenylyltranfer 97.9 3.3E-06 1.1E-10 79.2 2.1 41 11-56 366-409 (552)
166 1uf9_A TT1252 protein; P-loop, 97.9 4.9E-06 1.7E-10 66.8 2.7 33 14-47 8-40 (203)
167 3lw7_A Adenylate kinase relate 97.9 4.9E-06 1.7E-10 64.6 2.6 30 15-45 2-31 (179)
168 3ec2_A DNA replication protein 97.9 5E-06 1.7E-10 65.9 2.6 26 11-36 35-60 (180)
169 1zuh_A Shikimate kinase; alpha 97.9 4.5E-06 1.5E-10 65.4 2.2 33 15-47 8-40 (168)
170 2v54_A DTMP kinase, thymidylat 97.9 8.2E-06 2.8E-10 65.6 3.8 27 12-38 2-28 (204)
171 3ake_A Cytidylate kinase; CMP 97.9 4.9E-06 1.7E-10 67.0 2.5 32 16-47 4-35 (208)
172 1gvn_B Zeta; postsegregational 97.9 5.9E-06 2E-10 71.2 3.1 36 11-46 30-67 (287)
173 1aky_A Adenylate kinase; ATP:A 97.9 5.2E-06 1.8E-10 68.0 2.6 35 12-46 2-36 (220)
174 1ly1_A Polynucleotide kinase; 97.9 4.9E-06 1.7E-10 65.4 2.4 32 15-46 3-35 (181)
175 1kht_A Adenylate kinase; phosp 97.9 3.9E-06 1.3E-10 66.6 1.7 26 14-39 3-28 (192)
176 2grj_A Dephospho-COA kinase; T 97.9 4.8E-06 1.6E-10 67.7 2.2 35 14-48 12-46 (192)
177 1e6c_A Shikimate kinase; phosp 97.9 4.6E-06 1.6E-10 65.3 2.0 33 15-47 3-35 (173)
178 3r20_A Cytidylate kinase; stru 97.8 5.3E-06 1.8E-10 69.6 2.5 39 13-53 8-46 (233)
179 3tqc_A Pantothenate kinase; bi 97.8 5.4E-06 1.8E-10 72.7 2.5 25 14-38 92-116 (321)
180 1vma_A Cell division protein F 97.8 7.4E-06 2.5E-10 71.3 3.4 42 10-56 100-142 (306)
181 2cdn_A Adenylate kinase; phosp 97.8 6.7E-06 2.3E-10 66.3 2.8 36 11-46 17-52 (201)
182 1nn5_A Similar to deoxythymidy 97.8 8.1E-06 2.8E-10 66.1 3.3 32 8-39 3-34 (215)
183 1uj2_A Uridine-cytidine kinase 97.8 7.3E-06 2.5E-10 68.8 3.0 30 12-41 20-49 (252)
184 2p5t_B PEZT; postsegregational 97.8 1E-05 3.5E-10 68.0 3.6 30 10-39 28-57 (253)
185 2x8a_A Nuclear valosin-contain 97.8 9E-06 3.1E-10 69.5 3.2 30 11-42 43-72 (274)
186 3umf_A Adenylate kinase; rossm 97.8 1.1E-05 3.7E-10 66.9 3.5 35 10-44 25-59 (217)
187 2qag_B Septin-6, protein NEDD5 97.8 7.1E-06 2.4E-10 74.6 2.5 29 9-37 35-65 (427)
188 1pui_A ENGB, probable GTP-bind 97.8 4.4E-06 1.5E-10 67.3 1.0 42 9-50 21-62 (210)
189 2vli_A Antibiotic resistance p 97.8 1E-05 3.5E-10 63.8 3.1 31 13-43 4-34 (183)
190 1zak_A Adenylate kinase; ATP:A 97.8 6.1E-06 2.1E-10 67.7 1.8 33 13-45 4-36 (222)
191 3dl0_A Adenylate kinase; phosp 97.8 8.9E-06 3E-10 66.3 2.7 31 16-46 2-32 (216)
192 3tlx_A Adenylate kinase 2; str 97.8 8.5E-06 2.9E-10 68.3 2.5 36 11-46 26-61 (243)
193 2pt5_A Shikimate kinase, SK; a 97.8 7.9E-06 2.7E-10 63.7 2.1 32 16-47 2-33 (168)
194 3fb4_A Adenylate kinase; psych 97.8 7.9E-06 2.7E-10 66.5 2.1 31 16-46 2-32 (216)
195 1oix_A RAS-related protein RAB 97.7 9E-06 3.1E-10 65.0 2.0 24 15-38 30-53 (191)
196 2wwf_A Thymidilate kinase, put 97.7 4.8E-06 1.6E-10 67.4 0.3 29 11-39 7-35 (212)
197 1svm_A Large T antigen; AAA+ f 97.7 1.7E-05 5.9E-10 71.0 3.8 33 10-42 165-197 (377)
198 2cvh_A DNA repair and recombin 97.7 1.9E-05 6.5E-10 64.0 3.5 26 11-36 17-42 (220)
199 2jaq_A Deoxyguanosine kinase; 97.7 1.7E-05 5.8E-10 63.5 3.1 28 16-43 2-29 (205)
200 1n0w_A DNA repair protein RAD5 97.7 1.8E-05 6E-10 65.2 2.9 27 11-37 21-47 (243)
201 3zvl_A Bifunctional polynucleo 97.7 2.7E-05 9.1E-10 70.4 4.2 37 11-47 255-291 (416)
202 1a7j_A Phosphoribulokinase; tr 97.7 7E-06 2.4E-10 70.8 0.4 36 13-48 4-44 (290)
203 1m7g_A Adenylylsulfate kinase; 97.7 1E-05 3.4E-10 66.0 1.2 29 10-38 21-49 (211)
204 2px0_A Flagellar biosynthesis 97.7 1.4E-05 4.7E-10 69.2 2.1 40 12-56 103-144 (296)
205 3be4_A Adenylate kinase; malar 97.6 1.5E-05 5E-10 65.4 2.1 34 14-47 5-38 (217)
206 1odf_A YGR205W, hypothetical 3 97.6 2.2E-05 7.5E-10 67.8 3.2 29 11-39 28-56 (290)
207 1in4_A RUVB, holliday junction 97.6 1.2E-05 4.2E-10 70.4 1.6 42 14-56 51-93 (334)
208 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 2.2E-05 7.6E-10 66.3 3.2 32 12-43 2-36 (260)
209 2pbr_A DTMP kinase, thymidylat 97.6 1.9E-05 6.4E-10 62.7 2.5 30 16-45 2-34 (195)
210 1ixz_A ATP-dependent metallopr 97.6 2.8E-05 9.7E-10 64.9 3.6 23 17-39 52-74 (254)
211 1ak2_A Adenylate kinase isoenz 97.6 2.2E-05 7.5E-10 65.0 2.8 34 13-46 15-48 (233)
212 1zu4_A FTSY; GTPase, signal re 97.6 2.2E-05 7.4E-10 68.8 2.7 43 9-56 100-143 (320)
213 2plr_A DTMP kinase, probable t 97.6 2.5E-05 8.5E-10 62.8 2.7 28 13-40 3-30 (213)
214 2f9l_A RAB11B, member RAS onco 97.6 4.9E-05 1.7E-09 60.9 4.2 23 16-38 7-29 (199)
215 2h92_A Cytidylate kinase; ross 97.6 2.7E-05 9.3E-10 63.4 2.6 34 14-47 3-36 (219)
216 2f6r_A COA synthase, bifunctio 97.6 2.2E-05 7.7E-10 67.2 2.2 33 14-47 75-107 (281)
217 1nks_A Adenylate kinase; therm 97.6 1.3E-05 4.6E-10 63.4 0.7 24 16-39 3-26 (194)
218 3sr0_A Adenylate kinase; phosp 97.6 3.5E-05 1.2E-09 63.2 3.2 30 16-45 2-31 (206)
219 1iy2_A ATP-dependent metallopr 97.6 4.3E-05 1.5E-09 64.9 3.7 23 17-39 76-98 (278)
220 1ls1_A Signal recognition part 97.5 2.3E-05 8E-10 67.7 2.0 39 13-56 97-136 (295)
221 2qnr_A Septin-2, protein NEDD5 97.5 2.4E-05 8.4E-10 67.7 2.1 35 16-56 20-56 (301)
222 1e4v_A Adenylate kinase; trans 97.5 2.4E-05 8.1E-10 63.8 1.9 31 16-46 2-32 (214)
223 1nlf_A Regulatory protein REPA 97.5 3.2E-05 1.1E-09 65.8 2.7 26 11-36 27-52 (279)
224 2z0h_A DTMP kinase, thymidylat 97.5 3.9E-05 1.3E-09 61.1 3.0 28 16-43 2-32 (197)
225 2xb4_A Adenylate kinase; ATP-b 97.5 2.7E-05 9.3E-10 64.1 2.2 31 16-46 2-32 (223)
226 1pzn_A RAD51, DNA repair and r 97.5 2.1E-05 7.3E-10 69.5 1.6 28 10-37 127-154 (349)
227 2yvu_A Probable adenylyl-sulfa 97.5 4.7E-05 1.6E-09 60.5 3.3 28 11-38 10-37 (186)
228 4eaq_A DTMP kinase, thymidylat 97.5 3.9E-05 1.3E-09 63.8 2.7 29 10-38 22-50 (229)
229 1ni3_A YCHF GTPase, YCHF GTP-b 97.5 7.8E-05 2.7E-09 67.1 4.5 44 10-53 16-67 (392)
230 1ewq_A DNA mismatch repair pro 97.5 3.5E-05 1.2E-09 74.9 2.2 32 14-50 576-608 (765)
231 3thx_B DNA mismatch repair pro 97.4 6.5E-05 2.2E-09 74.3 3.9 28 9-36 668-695 (918)
232 1lv7_A FTSH; alpha/beta domain 97.4 7.4E-05 2.5E-09 62.4 3.8 31 15-45 46-76 (257)
233 1wb9_A DNA mismatch repair pro 97.4 5.4E-05 1.9E-09 73.9 3.3 25 12-36 605-629 (800)
234 2www_A Methylmalonic aciduria 97.4 3.8E-05 1.3E-09 67.9 1.9 25 12-36 72-96 (349)
235 3cf0_A Transitional endoplasmi 97.4 9.9E-05 3.4E-09 63.5 4.5 37 11-47 46-82 (301)
236 1ltq_A Polynucleotide kinase; 97.4 5.3E-05 1.8E-09 64.8 2.2 32 15-46 3-35 (301)
237 1w1w_A Structural maintenance 97.4 6.2E-05 2.1E-09 68.1 2.7 29 11-39 23-51 (430)
238 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7.8E-05 2.7E-09 57.8 2.9 23 14-36 23-45 (149)
239 3fdi_A Uncharacterized protein 97.3 0.00012 4.1E-09 59.6 3.7 31 14-44 6-36 (201)
240 3b9p_A CG5977-PA, isoform A; A 97.3 0.00013 4.5E-09 62.0 3.9 33 13-45 53-85 (297)
241 3m6a_A ATP-dependent protease 97.3 6.8E-05 2.3E-09 70.1 2.2 29 13-41 107-135 (543)
242 1gtv_A TMK, thymidylate kinase 97.3 7E-05 2.4E-09 60.5 1.9 24 16-39 2-25 (214)
243 1sxj_E Activator 1 40 kDa subu 97.3 7.4E-05 2.5E-09 65.1 1.8 37 16-56 38-75 (354)
244 2dr3_A UPF0273 protein PH0284; 97.3 0.00011 3.8E-09 60.4 2.6 26 11-36 20-45 (247)
245 1np6_A Molybdopterin-guanine d 97.3 0.00015 5E-09 58.0 3.3 24 14-37 6-29 (174)
246 3qf7_A RAD50; ABC-ATPase, ATPa 97.3 0.00011 3.7E-09 65.3 2.8 34 187-221 305-338 (365)
247 1tf7_A KAIC; homohexamer, hexa 97.3 9.5E-05 3.3E-09 68.7 2.4 27 10-36 277-303 (525)
248 3h4m_A Proteasome-activating n 97.2 0.00025 8.5E-09 59.9 4.5 34 12-45 49-82 (285)
249 3thx_A DNA mismatch repair pro 97.2 0.00013 4.4E-09 72.4 3.0 27 10-36 658-684 (934)
250 2p67_A LAO/AO transport system 97.2 0.00012 4.1E-09 64.4 2.2 28 10-37 52-79 (341)
251 3t15_A Ribulose bisphosphate c 97.2 0.00019 6.4E-09 61.7 3.1 37 12-48 34-70 (293)
252 2gj8_A MNME, tRNA modification 97.2 0.00017 5.8E-09 56.5 2.6 26 12-37 2-27 (172)
253 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0002 6.9E-09 59.5 3.2 33 12-44 37-69 (262)
254 3hr8_A Protein RECA; alpha and 97.1 0.00013 4.3E-09 64.9 1.7 27 11-37 58-84 (356)
255 2o5v_A DNA replication and rep 97.1 0.00018 6.3E-09 63.9 2.8 27 9-36 22-48 (359)
256 3lda_A DNA repair protein RAD5 97.1 0.00018 6.2E-09 64.8 2.7 25 11-35 175-199 (400)
257 1ypw_A Transitional endoplasmi 97.1 0.00031 1E-08 68.7 4.4 35 10-44 234-268 (806)
258 1e69_A Chromosome segregation 97.1 0.00016 5.3E-09 63.0 2.1 28 10-38 21-48 (322)
259 2ga8_A Hypothetical 39.9 kDa p 97.1 7.6E-05 2.6E-09 66.2 -0.1 32 11-42 19-52 (359)
260 2qag_C Septin-7; cell cycle, c 97.1 0.0002 6.7E-09 64.9 2.6 21 17-37 34-54 (418)
261 2wji_A Ferrous iron transport 97.1 0.00025 8.6E-09 54.9 2.9 23 15-37 4-26 (165)
262 2p65_A Hypothetical protein PF 97.1 0.00035 1.2E-08 54.3 3.6 25 13-37 42-66 (187)
263 2dhr_A FTSH; AAA+ protein, hex 97.1 0.00023 7.9E-09 65.9 2.9 28 17-44 67-94 (499)
264 3hdt_A Putative kinase; struct 97.1 0.00019 6.5E-09 59.6 2.0 32 14-45 14-45 (223)
265 3qks_A DNA double-strand break 97.0 0.00027 9.2E-09 57.5 2.9 24 14-37 23-46 (203)
266 2o8b_B DNA mismatch repair pro 97.0 0.00025 8.5E-09 71.0 3.2 22 14-36 789-810 (1022)
267 3gmt_A Adenylate kinase; ssgci 97.0 0.00026 8.9E-09 59.1 2.8 30 16-45 10-39 (230)
268 4i1u_A Dephospho-COA kinase; s 97.0 0.00026 8.8E-09 58.3 2.7 32 15-47 10-41 (210)
269 3bos_A Putative DNA replicatio 97.0 0.00036 1.2E-08 56.7 3.5 26 13-38 51-76 (242)
270 3hws_A ATP-dependent CLP prote 97.0 0.00031 1.1E-08 61.8 3.2 35 13-47 50-84 (363)
271 4b4t_M 26S protease regulatory 97.0 0.00033 1.1E-08 63.8 3.4 40 11-50 212-251 (434)
272 1xjc_A MOBB protein homolog; s 97.0 0.00035 1.2E-08 55.6 3.2 24 14-37 4-27 (169)
273 4b4t_K 26S protease regulatory 97.0 0.00035 1.2E-08 63.5 3.4 40 11-50 203-242 (428)
274 3qkt_A DNA double-strand break 97.0 0.0003 1E-08 61.6 2.9 34 186-220 273-306 (339)
275 3k1j_A LON protease, ATP-depen 97.0 0.00031 1.1E-08 66.4 3.1 29 11-39 57-85 (604)
276 2ffh_A Protein (FFH); SRP54, s 97.0 0.00024 8.3E-09 64.5 2.2 39 13-56 97-136 (425)
277 1jbk_A CLPB protein; beta barr 97.0 0.00041 1.4E-08 53.9 3.3 26 13-38 42-67 (195)
278 1udx_A The GTP-binding protein 97.0 0.00022 7.6E-09 64.6 1.9 28 10-37 153-180 (416)
279 3ld9_A DTMP kinase, thymidylat 97.0 0.0003 1E-08 58.4 2.5 34 6-39 13-46 (223)
280 3v9p_A DTMP kinase, thymidylat 96.9 0.00029 9.9E-09 58.6 2.2 28 11-38 22-49 (227)
281 3tmk_A Thymidylate kinase; pho 96.9 0.00038 1.3E-08 57.5 2.9 30 11-40 2-31 (216)
282 4fcw_A Chaperone protein CLPB; 96.9 0.00038 1.3E-08 59.4 2.9 25 14-38 47-71 (311)
283 4b4t_L 26S protease subunit RP 96.9 0.00039 1.3E-08 63.3 3.1 40 11-50 212-251 (437)
284 2zej_A Dardarin, leucine-rich 96.9 0.00033 1.1E-08 55.2 2.3 22 16-37 4-25 (184)
285 2wjg_A FEOB, ferrous iron tran 96.9 0.00044 1.5E-08 54.2 3.0 23 15-37 8-30 (188)
286 1um8_A ATP-dependent CLP prote 96.9 0.00044 1.5E-08 61.1 3.2 34 14-47 72-105 (376)
287 1g8f_A Sulfate adenylyltransfe 96.9 0.00033 1.1E-08 65.0 2.5 29 12-40 393-421 (511)
288 2w58_A DNAI, primosome compone 96.9 0.00049 1.7E-08 55.1 3.2 23 15-37 55-77 (202)
289 1p5z_B DCK, deoxycytidine kina 96.9 0.0003 1E-08 59.1 1.9 29 11-39 21-49 (263)
290 3tqf_A HPR(Ser) kinase; transf 96.9 0.0008 2.7E-08 53.9 4.1 37 13-50 15-51 (181)
291 4b4t_J 26S protease regulatory 96.9 0.00044 1.5E-08 62.3 2.8 40 11-50 179-218 (405)
292 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00057 1.9E-08 60.7 3.5 23 15-37 180-202 (364)
293 1ofh_A ATP-dependent HSL prote 96.9 0.00043 1.5E-08 58.8 2.6 32 13-44 49-80 (310)
294 1d2n_A N-ethylmaleimide-sensit 96.9 0.00044 1.5E-08 58.2 2.6 32 13-44 63-94 (272)
295 2r62_A Cell division protease 96.9 0.00024 8.3E-09 59.5 1.0 31 16-46 46-76 (268)
296 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.00074 2.5E-08 58.7 4.0 32 13-44 44-76 (322)
297 2ocp_A DGK, deoxyguanosine kin 96.8 0.00072 2.5E-08 56.0 3.7 26 14-39 2-27 (241)
298 2ygr_A Uvrabc system protein A 96.8 0.00023 8E-09 70.6 0.8 27 8-34 662-688 (993)
299 3lxx_A GTPase IMAP family memb 96.8 0.00045 1.6E-08 57.0 2.5 24 14-37 29-52 (239)
300 3d8b_A Fidgetin-like protein 1 96.8 0.00082 2.8E-08 59.2 4.3 35 12-46 115-149 (357)
301 1j8m_F SRP54, signal recogniti 96.8 0.00024 8E-09 61.5 0.7 38 14-56 98-136 (297)
302 3eie_A Vacuolar protein sortin 96.8 0.00071 2.4E-08 58.6 3.7 33 13-45 50-82 (322)
303 1sxj_C Activator 1 40 kDa subu 96.8 0.00053 1.8E-08 59.7 2.9 26 13-38 43-70 (340)
304 3kl4_A SRP54, signal recogniti 96.8 0.00034 1.2E-08 63.7 1.6 25 13-37 96-120 (433)
305 1x6v_B Bifunctional 3'-phospho 96.8 0.00064 2.2E-08 64.6 3.5 32 13-44 51-85 (630)
306 1l8q_A Chromosomal replication 96.8 0.00059 2E-08 58.9 3.0 26 13-38 36-61 (324)
307 3vfd_A Spastin; ATPase, microt 96.8 0.001 3.5E-08 59.1 4.6 37 13-49 147-183 (389)
308 1tue_A Replication protein E1; 96.8 0.00094 3.2E-08 54.9 3.9 32 11-42 55-86 (212)
309 4b4t_I 26S protease regulatory 96.8 0.00076 2.6E-08 61.2 3.7 40 11-50 213-252 (437)
310 2qby_A CDC6 homolog 1, cell di 96.8 0.00061 2.1E-08 59.3 3.0 27 12-38 43-69 (386)
311 4b4t_H 26S protease regulatory 96.8 0.00058 2E-08 62.5 2.8 40 11-50 240-279 (467)
312 1mky_A Probable GTP-binding pr 96.7 0.00093 3.2E-08 60.5 4.1 42 15-56 181-230 (439)
313 2r6f_A Excinuclease ABC subuni 96.7 0.00022 7.6E-09 70.6 -0.2 28 8-35 644-671 (972)
314 3n70_A Transport activator; si 96.7 0.00083 2.8E-08 51.3 3.1 26 12-37 22-47 (145)
315 1g41_A Heat shock protein HSLU 96.7 0.0007 2.4E-08 61.8 3.0 33 15-47 51-83 (444)
316 2ce7_A Cell division protein F 96.7 0.00077 2.6E-08 62.0 3.3 30 16-45 51-80 (476)
317 1svi_A GTP-binding protein YSX 96.7 0.0011 3.7E-08 52.2 3.8 28 10-37 19-46 (195)
318 1sxj_A Activator 1 95 kDa subu 96.7 0.0012 4.2E-08 61.0 4.6 35 13-47 76-110 (516)
319 2zr9_A Protein RECA, recombina 96.7 0.00054 1.8E-08 60.5 2.1 26 11-36 58-83 (349)
320 3pfi_A Holliday junction ATP-d 96.7 0.00099 3.4E-08 57.6 3.7 30 15-44 56-85 (338)
321 2bov_A RAla, RAS-related prote 96.7 0.00075 2.6E-08 53.5 2.7 25 13-37 13-37 (206)
322 1njg_A DNA polymerase III subu 96.7 0.00093 3.2E-08 53.7 3.2 24 15-38 46-69 (250)
323 4edh_A DTMP kinase, thymidylat 96.7 0.00068 2.3E-08 55.7 2.3 26 13-38 5-30 (213)
324 2qp9_X Vacuolar protein sortin 96.6 0.00098 3.3E-08 58.7 3.2 33 14-46 84-116 (355)
325 1ypw_A Transitional endoplasmi 96.6 0.00051 1.7E-08 67.1 1.5 39 10-48 507-545 (806)
326 3lv8_A DTMP kinase, thymidylat 96.6 0.00078 2.7E-08 56.3 2.4 26 13-38 26-51 (236)
327 2lkc_A Translation initiation 96.6 0.0016 5.6E-08 50.1 4.1 26 12-37 6-31 (178)
328 3llm_A ATP-dependent RNA helic 96.6 0.0011 3.7E-08 54.7 3.2 24 12-35 74-97 (235)
329 1ega_A Protein (GTP-binding pr 96.6 0.00099 3.4E-08 57.4 3.0 25 13-37 7-31 (301)
330 3pqc_A Probable GTP-binding pr 96.6 0.0016 5.4E-08 51.0 3.9 25 13-37 22-46 (195)
331 2ged_A SR-beta, signal recogni 96.6 0.0013 4.6E-08 51.6 3.5 25 13-37 47-71 (193)
332 1ko7_A HPR kinase/phosphatase; 96.6 0.0013 4.4E-08 57.4 3.5 37 13-50 143-179 (314)
333 1fnn_A CDC6P, cell division co 96.6 0.0012 4.1E-08 57.7 3.4 23 16-38 46-68 (389)
334 3syl_A Protein CBBX; photosynt 96.6 0.0013 4.4E-08 56.0 3.5 27 12-38 65-91 (309)
335 2r44_A Uncharacterized protein 96.5 0.0015 5.2E-08 56.4 3.9 30 14-43 46-75 (331)
336 1z2a_A RAS-related protein RAB 96.5 0.0011 3.8E-08 50.5 2.7 22 16-37 7-28 (168)
337 2dyk_A GTP-binding protein; GT 96.5 0.0011 3.9E-08 50.1 2.7 22 16-37 3-24 (161)
338 2c9o_A RUVB-like 1; hexameric 96.5 0.001 3.5E-08 60.5 2.7 34 13-46 62-97 (456)
339 4tmk_A Protein (thymidylate ki 96.5 0.001 3.5E-08 54.7 2.4 26 13-38 2-27 (213)
340 3ice_A Transcription terminati 96.5 0.0013 4.5E-08 59.1 3.3 28 9-36 169-196 (422)
341 2zan_A Vacuolar protein sortin 96.5 0.0019 6.6E-08 58.6 4.4 34 13-46 166-200 (444)
342 2ce2_X GTPase HRAS; signaling 96.5 0.0011 3.8E-08 50.1 2.5 22 16-37 5-26 (166)
343 2ius_A DNA translocase FTSK; n 96.5 0.0018 6.3E-08 60.0 4.3 26 11-36 164-189 (512)
344 3co5_A Putative two-component 96.5 0.0008 2.7E-08 51.3 1.5 27 13-39 26-52 (143)
345 3pvs_A Replication-associated 96.5 0.0015 5E-08 59.6 3.5 29 15-43 51-79 (447)
346 4dhe_A Probable GTP-binding pr 96.5 0.0017 5.7E-08 52.4 3.5 26 12-37 27-52 (223)
347 1v5w_A DMC1, meiotic recombina 96.5 0.0013 4.6E-08 57.7 3.1 27 11-37 119-145 (343)
348 3clv_A RAB5 protein, putative; 96.5 0.0016 5.5E-08 51.0 3.3 23 15-37 8-30 (208)
349 1kao_A RAP2A; GTP-binding prot 96.5 0.0013 4.5E-08 49.8 2.7 22 16-37 5-26 (167)
350 2axn_A 6-phosphofructo-2-kinas 96.4 0.0012 4.2E-08 61.3 2.8 27 13-39 34-60 (520)
351 2erx_A GTP-binding protein DI- 96.4 0.0014 4.8E-08 50.0 2.7 21 16-36 5-25 (172)
352 1u8z_A RAS-related protein RAL 96.4 0.0014 4.8E-08 49.7 2.7 22 16-37 6-27 (168)
353 3ihw_A Centg3; RAS, centaurin, 96.4 0.0024 8.3E-08 50.3 4.1 23 15-37 21-43 (184)
354 2chg_A Replication factor C sm 96.4 0.0014 4.7E-08 52.1 2.7 23 16-38 40-62 (226)
355 2nzj_A GTP-binding protein REM 96.4 0.0014 4.7E-08 50.4 2.6 22 16-37 6-27 (175)
356 1z0j_A RAB-22, RAS-related pro 96.4 0.0014 4.9E-08 49.9 2.7 22 16-37 8-29 (170)
357 1ek0_A Protein (GTP-binding pr 96.4 0.0015 5.1E-08 49.7 2.7 22 16-37 5-26 (170)
358 1ky3_A GTP-binding protein YPT 96.4 0.0015 5E-08 50.4 2.7 23 15-37 9-31 (182)
359 3k53_A Ferrous iron transport 96.4 0.0014 4.9E-08 55.2 2.7 22 16-37 5-26 (271)
360 1upt_A ARL1, ADP-ribosylation 96.4 0.0018 6.1E-08 49.5 3.1 26 12-37 5-30 (171)
361 2orw_A Thymidine kinase; TMTK, 96.4 0.0017 5.9E-08 51.9 3.1 24 13-36 2-25 (184)
362 3bwd_D RAC-like GTP-binding pr 96.4 0.0019 6.6E-08 49.9 3.3 27 11-37 5-31 (182)
363 3q85_A GTP-binding protein REM 96.4 0.0015 5.1E-08 49.9 2.6 22 16-37 4-25 (169)
364 1g16_A RAS-related protein SEC 96.4 0.0014 4.8E-08 50.0 2.5 22 16-37 5-26 (170)
365 4ad8_A DNA repair protein RECN 96.4 0.0013 4.4E-08 60.9 2.5 28 11-39 58-85 (517)
366 2v1u_A Cell division control p 96.4 0.0012 4.3E-08 57.4 2.3 27 12-38 42-68 (387)
367 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0011 3.8E-08 56.8 1.9 30 14-43 38-67 (324)
368 3auy_A DNA double-strand break 96.4 0.0014 4.8E-08 58.0 2.6 22 14-35 25-46 (371)
369 1c1y_A RAS-related protein RAP 96.4 0.0016 5.6E-08 49.5 2.7 22 16-37 5-26 (167)
370 1z08_A RAS-related protein RAB 96.4 0.0016 5.4E-08 49.8 2.6 22 16-37 8-29 (170)
371 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0019 6.6E-08 58.0 3.5 28 10-37 18-45 (396)
372 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0016 5.5E-08 50.1 2.7 22 16-37 9-30 (177)
373 3uk6_A RUVB-like 2; hexameric 96.4 0.0014 4.7E-08 57.2 2.5 27 13-39 69-95 (368)
374 3q72_A GTP-binding protein RAD 96.4 0.0012 4.2E-08 50.3 1.9 22 16-37 4-25 (166)
375 3con_A GTPase NRAS; structural 96.4 0.0013 4.4E-08 51.6 2.1 23 15-37 22-44 (190)
376 4ag6_A VIRB4 ATPase, type IV s 96.3 0.0015 5.3E-08 58.0 2.7 25 13-37 34-58 (392)
377 1r2q_A RAS-related protein RAB 96.3 0.0018 6.2E-08 49.2 2.7 22 16-37 8-29 (170)
378 2r6a_A DNAB helicase, replicat 96.3 0.002 7E-08 58.6 3.4 27 10-36 199-225 (454)
379 2fn4_A P23, RAS-related protei 96.3 0.0016 5.6E-08 50.1 2.4 23 15-37 10-32 (181)
380 2iwr_A Centaurin gamma 1; ANK 96.3 0.0021 7.3E-08 49.6 3.1 23 15-37 8-30 (178)
381 3tw8_B RAS-related protein RAB 96.3 0.0015 5.1E-08 50.4 2.1 23 15-37 10-32 (181)
382 2dy1_A Elongation factor G; tr 96.3 0.0017 5.8E-08 62.1 2.7 44 10-56 5-48 (665)
383 2qby_B CDC6 homolog 3, cell di 96.3 0.0024 8.1E-08 55.8 3.5 26 13-38 44-69 (384)
384 2qgz_A Helicase loader, putati 96.3 0.0023 7.7E-08 55.4 3.3 24 14-37 152-175 (308)
385 4dsu_A GTPase KRAS, isoform 2B 96.3 0.002 6.7E-08 50.1 2.7 22 16-37 6-27 (189)
386 3bc1_A RAS-related protein RAB 96.3 0.002 6.9E-08 50.2 2.7 22 16-37 13-34 (195)
387 2z43_A DNA repair and recombin 96.2 0.0019 6.4E-08 56.1 2.7 27 11-37 104-130 (324)
388 2oil_A CATX-8, RAS-related pro 96.2 0.002 7E-08 50.6 2.7 22 16-37 27-48 (193)
389 2cxx_A Probable GTP-binding pr 96.2 0.0018 6.2E-08 50.4 2.4 22 16-37 3-24 (190)
390 2zts_A Putative uncharacterize 96.2 0.0021 7.3E-08 52.5 2.9 26 11-36 27-52 (251)
391 1nrj_B SR-beta, signal recogni 96.2 0.0028 9.5E-08 50.9 3.5 25 14-38 12-36 (218)
392 2hxs_A RAB-26, RAS-related pro 96.2 0.0022 7.6E-08 49.4 2.8 23 15-37 7-29 (178)
393 2z4s_A Chromosomal replication 96.2 0.0019 6.7E-08 58.6 2.7 25 14-38 130-154 (440)
394 2y8e_A RAB-protein 6, GH09086P 96.2 0.002 6.9E-08 49.5 2.5 23 15-37 15-37 (179)
395 2a9k_A RAS-related protein RAL 96.2 0.002 6.8E-08 49.9 2.4 23 15-37 19-41 (187)
396 1r8s_A ADP-ribosylation factor 96.2 0.0022 7.7E-08 48.7 2.7 21 16-36 2-22 (164)
397 3hu3_A Transitional endoplasmi 96.2 0.0034 1.2E-07 57.9 4.3 35 12-46 236-270 (489)
398 1m8p_A Sulfate adenylyltransfe 96.2 0.0015 5E-08 61.5 1.9 28 12-39 394-421 (573)
399 3cf2_A TER ATPase, transitiona 96.2 0.0033 1.1E-07 61.4 4.3 37 11-47 235-271 (806)
400 1z0f_A RAB14, member RAS oncog 96.2 0.0023 8E-08 49.1 2.7 23 15-37 16-38 (179)
401 3bh0_A DNAB-like replicative h 96.2 0.0028 9.5E-08 54.9 3.4 27 10-36 64-90 (315)
402 1c9k_A COBU, adenosylcobinamid 96.2 0.0025 8.6E-08 51.1 2.9 22 16-37 1-22 (180)
403 2wsm_A Hydrogenase expression/ 96.2 0.0022 7.6E-08 51.7 2.6 24 14-37 30-53 (221)
404 3oes_A GTPase rhebl1; small GT 96.2 0.0019 6.6E-08 51.3 2.2 29 9-37 19-47 (201)
405 3t5g_A GTP-binding protein RHE 96.2 0.0023 7.8E-08 49.6 2.6 22 15-36 7-28 (181)
406 3lxw_A GTPase IMAP family memb 96.2 0.0023 7.8E-08 53.4 2.7 24 15-38 22-45 (247)
407 2atv_A RERG, RAS-like estrogen 96.2 0.0026 9E-08 50.2 2.9 26 12-37 26-51 (196)
408 1fzq_A ADP-ribosylation factor 96.2 0.0021 7.2E-08 50.4 2.3 24 14-37 16-39 (181)
409 3reg_A RHO-like small GTPase; 96.2 0.0019 6.6E-08 50.9 2.1 23 15-37 24-46 (194)
410 3t1o_A Gliding protein MGLA; G 96.1 0.0028 9.6E-08 49.5 3.0 24 16-39 16-39 (198)
411 1m2o_B GTP-binding protein SAR 96.1 0.0026 9E-08 50.3 2.8 24 14-37 23-46 (190)
412 2g6b_A RAS-related protein RAB 96.1 0.0026 8.7E-08 49.1 2.7 23 15-37 11-33 (180)
413 1sxj_D Activator 1 41 kDa subu 96.1 0.0023 8E-08 55.2 2.7 23 16-38 60-82 (353)
414 3pxg_A Negative regulator of g 96.1 0.0028 9.5E-08 58.0 3.3 25 14-38 201-225 (468)
415 2efe_B Small GTP-binding prote 96.1 0.0026 8.8E-08 49.2 2.6 22 16-37 14-35 (181)
416 2bjv_A PSP operon transcriptio 96.1 0.0031 1E-07 52.7 3.2 27 13-39 28-54 (265)
417 2bme_A RAB4A, RAS-related prot 96.1 0.0025 8.5E-08 49.6 2.5 23 15-37 11-33 (186)
418 1f6b_A SAR1; gtpases, N-termin 96.1 0.0018 6.1E-08 51.7 1.6 22 15-36 26-47 (198)
419 2gf0_A GTP-binding protein DI- 96.1 0.0031 1.1E-07 49.6 3.0 22 15-36 9-30 (199)
420 3b1v_A Ferrous iron uptake tra 96.1 0.0028 9.6E-08 53.8 2.8 23 15-37 4-26 (272)
421 3kkq_A RAS-related protein M-R 96.1 0.0029 9.9E-08 49.1 2.7 23 15-37 19-41 (183)
422 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0029 9.9E-08 49.0 2.7 22 16-37 7-28 (186)
423 2fh5_B SR-beta, signal recogni 96.1 0.0032 1.1E-07 50.4 3.0 24 14-37 7-30 (214)
424 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0027 9.2E-08 49.7 2.5 22 16-37 9-30 (184)
425 3tkl_A RAS-related protein RAB 96.0 0.0029 1E-07 49.6 2.7 22 16-37 18-39 (196)
426 3t34_A Dynamin-related protein 96.0 0.0029 9.8E-08 55.6 2.9 22 15-36 35-56 (360)
427 2gf9_A RAS-related protein RAB 96.0 0.0029 1E-07 49.6 2.7 23 15-37 23-45 (189)
428 1vg8_A RAS-related protein RAB 96.0 0.0029 9.9E-08 50.2 2.7 23 15-37 9-31 (207)
429 1bif_A 6-phosphofructo-2-kinas 96.0 0.0011 3.8E-08 60.6 -0.0 27 13-39 38-64 (469)
430 3cph_A RAS-related protein SEC 96.0 0.0032 1.1E-07 50.1 2.8 25 13-37 19-43 (213)
431 2fg5_A RAB-22B, RAS-related pr 96.0 0.0029 9.8E-08 49.9 2.4 23 15-37 24-46 (192)
432 1moz_A ARL1, ADP-ribosylation 96.0 0.0019 6.6E-08 50.1 1.4 24 13-36 17-40 (183)
433 1g8p_A Magnesium-chelatase 38 96.0 0.0022 7.5E-08 55.4 1.9 24 16-39 47-70 (350)
434 1dek_A Deoxynucleoside monopho 96.0 0.0036 1.2E-07 52.4 3.1 30 16-45 3-32 (241)
435 1z06_A RAS-related protein RAB 96.0 0.0033 1.1E-07 49.3 2.7 23 15-37 21-43 (189)
436 2p5s_A RAS and EF-hand domain 96.0 0.0035 1.2E-07 49.7 2.8 26 12-37 26-51 (199)
437 2e87_A Hypothetical protein PH 96.0 0.0032 1.1E-07 55.4 2.8 26 13-38 166-191 (357)
438 1zbd_A Rabphilin-3A; G protein 96.0 0.0034 1.2E-07 49.7 2.7 22 16-37 10-31 (203)
439 2vf7_A UVRA2, excinuclease ABC 96.0 0.0024 8.3E-08 62.6 2.1 33 188-221 402-434 (842)
440 2a5j_A RAS-related protein RAB 95.9 0.0035 1.2E-07 49.3 2.7 22 16-37 23-44 (191)
441 2i1q_A DNA repair and recombin 95.9 0.0028 9.6E-08 54.7 2.3 26 11-36 95-120 (322)
442 3iby_A Ferrous iron transport 95.9 0.0035 1.2E-07 52.7 2.8 22 16-37 3-24 (256)
443 2xtp_A GTPase IMAP family memb 95.9 0.003 1E-07 52.5 2.4 24 14-37 22-45 (260)
444 2h17_A ADP-ribosylation factor 95.9 0.0031 1.1E-07 49.2 2.3 25 13-37 20-44 (181)
445 2b8t_A Thymidine kinase; deoxy 95.9 0.0038 1.3E-07 51.7 2.9 27 12-38 10-36 (223)
446 3u61_B DNA polymerase accessor 95.9 0.0043 1.5E-07 53.3 3.4 31 14-44 48-78 (324)
447 2hf9_A Probable hydrogenase ni 95.9 0.0036 1.2E-07 50.6 2.7 25 13-37 37-61 (226)
448 3dz8_A RAS-related protein RAB 95.9 0.0034 1.2E-07 49.4 2.5 22 16-37 25-46 (191)
449 1x3s_A RAS-related protein RAB 95.9 0.0038 1.3E-07 48.8 2.7 23 15-37 16-38 (195)
450 1ksh_A ARF-like protein 2; sma 95.9 0.0038 1.3E-07 48.6 2.7 26 13-38 17-42 (186)
451 2bcg_Y Protein YP2, GTP-bindin 95.9 0.0035 1.2E-07 49.9 2.5 23 15-37 9-31 (206)
452 3cbq_A GTP-binding protein REM 95.9 0.0025 8.5E-08 50.8 1.6 22 15-36 24-45 (195)
453 2qag_A Septin-2, protein NEDD5 95.9 0.0027 9.2E-08 56.2 1.9 21 17-37 40-60 (361)
454 2cjw_A GTP-binding protein GEM 95.9 0.0039 1.3E-07 49.5 2.7 22 16-37 8-29 (192)
455 1zd9_A ADP-ribosylation factor 95.9 0.0039 1.3E-07 49.0 2.7 24 14-37 22-45 (188)
456 2gks_A Bifunctional SAT/APS ki 95.9 0.0017 5.9E-08 60.6 0.7 27 13-39 371-397 (546)
457 2il1_A RAB12; G-protein, GDP, 95.9 0.0032 1.1E-07 49.7 2.1 22 16-37 28-49 (192)
458 2ew1_A RAS-related protein RAB 95.8 0.0037 1.3E-07 50.2 2.5 23 15-37 27-49 (201)
459 3c5c_A RAS-like protein 12; GD 95.8 0.0037 1.3E-07 49.2 2.4 23 15-37 22-44 (187)
460 2o52_A RAS-related protein RAB 95.8 0.0037 1.3E-07 49.8 2.4 23 15-37 26-48 (200)
461 1jal_A YCHF protein; nucleotid 95.8 0.0065 2.2E-07 53.9 4.2 24 14-37 2-25 (363)
462 2qu8_A Putative nucleolar GTP- 95.8 0.0044 1.5E-07 50.4 2.7 24 14-37 29-52 (228)
463 2j0v_A RAC-like GTP-binding pr 95.8 0.0047 1.6E-07 49.3 2.9 26 12-37 7-32 (212)
464 3t5d_A Septin-7; GTP-binding p 95.8 0.0032 1.1E-07 53.2 1.9 21 16-36 10-30 (274)
465 3llu_A RAS-related GTP-binding 95.8 0.0052 1.8E-07 48.6 3.1 27 12-38 18-44 (196)
466 3pxi_A Negative regulator of g 95.8 0.0047 1.6E-07 59.7 3.3 26 13-38 200-225 (758)
467 4bas_A ADP-ribosylation factor 95.8 0.0033 1.1E-07 49.4 1.9 25 13-37 16-40 (199)
468 1gwn_A RHO-related GTP-binding 95.8 0.0041 1.4E-07 50.0 2.5 23 15-37 29-51 (205)
469 1zj6_A ADP-ribosylation factor 95.8 0.0049 1.7E-07 48.2 2.8 24 13-36 15-38 (187)
470 2fv8_A H6, RHO-related GTP-bin 95.8 0.0041 1.4E-07 49.7 2.4 23 15-37 26-48 (207)
471 3te6_A Regulatory protein SIR3 95.7 0.0067 2.3E-07 52.9 3.9 28 11-38 42-69 (318)
472 4hlc_A DTMP kinase, thymidylat 95.7 0.0038 1.3E-07 50.8 2.1 25 14-38 2-26 (205)
473 2q3h_A RAS homolog gene family 95.7 0.0046 1.6E-07 48.8 2.6 25 13-37 19-43 (201)
474 1jr3_A DNA polymerase III subu 95.7 0.0048 1.6E-07 53.7 2.8 26 15-40 39-64 (373)
475 2h57_A ADP-ribosylation factor 95.7 0.003 1E-07 49.6 1.4 25 14-38 21-45 (190)
476 1u94_A RECA protein, recombina 95.7 0.0049 1.7E-07 54.5 2.9 27 11-37 60-86 (356)
477 2f7s_A C25KG, RAS-related prot 95.7 0.0048 1.6E-07 49.4 2.6 22 16-37 27-48 (217)
478 2dby_A GTP-binding protein; GD 95.7 0.0046 1.6E-07 55.0 2.7 22 16-37 3-24 (368)
479 3iev_A GTP-binding protein ERA 95.7 0.004 1.4E-07 53.7 2.2 26 12-37 8-33 (308)
480 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0037 1.3E-07 54.7 2.0 25 12-36 121-145 (331)
481 1xx6_A Thymidine kinase; NESG, 95.7 0.0061 2.1E-07 49.1 3.2 28 11-38 5-32 (191)
482 3dm5_A SRP54, signal recogniti 95.7 0.0048 1.7E-07 56.2 2.8 25 13-37 99-123 (443)
483 2j1l_A RHO-related GTP-binding 95.7 0.0046 1.6E-07 49.8 2.4 23 15-37 35-57 (214)
484 3pih_A Uvrabc system protein A 95.7 0.0032 1.1E-07 62.2 1.7 29 4-32 14-42 (916)
485 1wf3_A GTP-binding protein; GT 95.7 0.0054 1.9E-07 52.8 3.0 23 15-37 8-30 (301)
486 2fu5_C RAS-related protein RAB 95.7 0.003 1E-07 49.0 1.2 22 15-36 9-30 (183)
487 2gco_A H9, RHO-related GTP-bin 95.6 0.005 1.7E-07 48.9 2.5 22 16-37 27-48 (201)
488 3a1s_A Iron(II) transport prot 95.6 0.0058 2E-07 51.4 2.9 22 16-37 7-28 (258)
489 2r6f_A Excinuclease ABC subuni 95.6 0.0037 1.3E-07 62.0 1.9 28 5-32 35-62 (972)
490 2ygr_A Uvrabc system protein A 95.6 0.0036 1.2E-07 62.2 1.9 28 5-32 37-64 (993)
491 4djt_A GTP-binding nuclear pro 95.6 0.0034 1.2E-07 50.4 1.4 23 15-37 12-34 (218)
492 2atx_A Small GTP binding prote 95.6 0.0052 1.8E-07 48.3 2.4 23 15-37 19-41 (194)
493 3p32_A Probable GTPase RV1496/ 95.6 0.0062 2.1E-07 53.5 3.0 25 13-37 78-102 (355)
494 2q6t_A DNAB replication FORK h 95.6 0.0065 2.2E-07 55.0 3.2 26 11-36 197-222 (444)
495 2v3c_C SRP54, signal recogniti 95.6 0.0041 1.4E-07 56.5 1.8 25 14-38 99-123 (432)
496 1jwy_B Dynamin A GTPase domain 95.5 0.0059 2E-07 52.1 2.7 24 14-37 24-47 (315)
497 3i8s_A Ferrous iron transport 95.5 0.006 2E-07 51.6 2.7 23 15-37 4-26 (274)
498 4a1f_A DNAB helicase, replicat 95.5 0.0072 2.4E-07 53.1 3.2 28 10-37 42-69 (338)
499 1h65_A Chloroplast outer envel 95.5 0.0064 2.2E-07 51.1 2.7 23 15-37 40-62 (270)
500 2b6h_A ADP-ribosylation factor 95.5 0.0063 2.2E-07 48.1 2.5 24 13-36 28-51 (192)
No 1
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=5e-43 Score=306.64 Aligned_cols=187 Identities=30% Similarity=0.565 Sum_probs=164.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHH
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDS 91 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~ 91 (236)
..+.+++|+||||||||||+..||..++++++++|++|||+|++|+|++|+++|+.+++||+++.+++.+.|++.+|...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEechHHHHHHHHhcCCC-CCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCC
Q 048453 92 AVPLISEILSRDHIPFIVGGTNYYIQALVSPFL-LDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPV 170 (236)
Q Consensus 92 ~~~~i~~~~~~~~~~il~GG~~~~irall~~~l-~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~ 170 (236)
+...|+++..+++.|+++|||++|++|++.++. .+....+++.+
T Consensus 88 a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~----------------------------------- 132 (316)
T 3foz_A 88 ALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRAR----------------------------------- 132 (316)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHH-----------------------------------
T ss_pred HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHH-----------------------------------
Confidence 999999999999999999999999999998853 12111122111
Q ss_pred CcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhcccccCCCC
Q 048453 171 GPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKAAEVGF 234 (236)
Q Consensus 171 ~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~~~~~~~ 234 (236)
+...++..|..+||++|+++||++|++|||||++||+||||||..||+++|+|++.+.....|
T Consensus 133 -l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~ 195 (316)
T 3foz_A 133 -IEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTSGDALPY 195 (316)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHSSCHHHHHTSCCCCCSS
T ss_pred -HHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHHHHHHHHHHHHHHCCCHHHHhhccCCCCCC
Confidence 334566778999999999999999999999999999999999999999999998765443344
No 2
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=1.2e-42 Score=304.59 Aligned_cols=182 Identities=38% Similarity=0.632 Sum_probs=153.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHH
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAV 93 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~ 93 (236)
+.+++|+||||||||||+..||..++++++++|+.|||++++|+|++|+++|+.+++||+++.+++.+.|++.+|...+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~ 82 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLAT 82 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCCcc
Q 048453 94 PLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPD 173 (236)
Q Consensus 94 ~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (236)
..|+++..+++.||+||||++|++|++.++.+.+. ..+.. ++.. +.
T Consensus 83 ~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~--~~~~~-~R~~-------------------------------l~ 128 (322)
T 3exa_A 83 PLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDI--RADED-YRHE-------------------------------LE 128 (322)
T ss_dssp HHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCC--BCCHH-HHHH-------------------------------HH
T ss_pred HHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCC--CCCHH-HHHH-------------------------------HH
Confidence 99999999999999999999999999998633222 11111 1110 33
Q ss_pred hhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhcccc
Q 048453 174 SDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKA 229 (236)
Q Consensus 174 ~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~~ 229 (236)
..++..|..+||++|+++||++|++|||||++||+||||||..||+++|+|++.+.
T Consensus 129 ~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV~~~TG~~~S~~~~~~~ 184 (322)
T 3exa_A 129 AFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEE 184 (322)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHHHHHHHHHHHHTC-----------
T ss_pred HHHHhcCHHHHHHHHHhhCHHHHhhcCcccHHHHHHHHHHHHHHCCCHHHHhhhcc
Confidence 46677899999999999999999999999999999999999999999999987554
No 3
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=3.1e-40 Score=298.20 Aligned_cols=186 Identities=34% Similarity=0.632 Sum_probs=161.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHH
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAV 93 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~ 93 (236)
..+++|+||||||||||+..|+..++.++++.|++|+|++++|+|++|+.+|+.+++|||++.+++.+.|++.+|...+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCCcc
Q 048453 94 PLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPD 173 (236)
Q Consensus 94 ~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (236)
..|+++..+|+.||++|||++|++||+.++. +.+.. .+.. ++. ..
T Consensus 82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~-~~~~~-~~~~-~r~--------------------------------~~ 126 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV-DTKSS-ERKL-TRK--------------------------------QL 126 (409)
T ss_dssp HHHHHHHTTTCEEEEECSCGGGGGGGGTCSC-CCSSS-CCCC-CHH--------------------------------HH
T ss_pred HHHHHHHhcCCCEEEECChHHHHHHHHcccc-CCCCc-cCHH-HHH--------------------------------HH
Confidence 9999999999999999999999999997753 22211 1110 000 01
Q ss_pred hhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhcccccCCCC
Q 048453 174 SDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKAAEVGF 234 (236)
Q Consensus 174 ~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~~~~~~~ 234 (236)
..++..|..+||++|+++||++|++|||||++||+||||||..||+++|+|++.+.....|
T Consensus 127 ~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~ 187 (409)
T 3eph_A 127 DILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKF 187 (409)
T ss_dssp HHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHHHHHHHHHHHHHCSCHHHHHHTCCCCCSS
T ss_pred HHHhccCHHHHHHHHHHhCHHHHHhcCcccHHHHHHHHHHHHHHCCCHHHHHhhccCCCCc
Confidence 1344556888999999999999999999999999999999999999999998876544444
No 4
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=3.8e-37 Score=271.62 Aligned_cols=179 Identities=32% Similarity=0.532 Sum_probs=105.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHHH
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAVP 94 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~~ 94 (236)
.+++|+||||||||||++.||+.+++++++.|+.++|+|++|+|++++.+++.+++||+++..++.+.+++..|...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~ 85 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALA 85 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhhcCCCCCCCcch
Q 048453 95 LISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVGPDS 174 (236)
Q Consensus 95 ~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (236)
.+.++..+++.||++||+++|+++++.++. +.|.. +.. ++. .+..
T Consensus 86 ~i~~i~~~g~~~IlvGGt~~y~~all~g~~-~~p~~--~~~-~R~-------------------------------~l~~ 130 (323)
T 3crm_A 86 AMAKATARGRIPLLVGGTMLYYKALLEGLA-DMPGA--DPE-VRA-------------------------------AIEA 130 (323)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHCCC---------------------------------------------------
T ss_pred HHHHHHHcCCeEEEECCchhhHHHHHcCCC-CCCCC--CHH-HHH-------------------------------HHHH
Confidence 999999999999999999999999998853 11211 111 111 1334
Q ss_pred hHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhccc
Q 048453 175 DLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGK 228 (236)
Q Consensus 175 ~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~ 228 (236)
.++..|..++|++|+++||++|++|||||++||+||||||..||+++|+|++.+
T Consensus 131 ~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~RALEv~~~tG~~~s~~~~~~ 184 (323)
T 3crm_A 131 EAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQ 184 (323)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHHHHHHHHHHHHCCCHHHHHhhc
Confidence 556678899999999999999999999999999999999999999999987654
No 5
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=3.5e-34 Score=254.20 Aligned_cols=180 Identities=35% Similarity=0.581 Sum_probs=155.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhHHHHHHHH
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKEFRDSAVP 94 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~~~~~~~~ 94 (236)
.+++|+||||||||||++.|+..+++++++.|+.|+|++++|+|++++.+++.+++||+++...+.+.+++.+|...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEechHHHHHHHHhcCC-CCCCCCcccc--hhhhcccccccccchhhhhcccchhhhhhhcCCCCCCC
Q 048453 95 LISEILSRDHIPFIVGGTNYYIQALVSPF-LLDDSAEDMD--ESCFGSLSGIKQLFYFTCICTLNTVLYRLFFAGDEPVG 171 (236)
Q Consensus 95 ~i~~~~~~~~~~il~GG~~~~irall~~~-l~d~~~~~ld--~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (236)
.+.++...++.||++||+++|+++++..+ .+.++ .+.+ .+..+.
T Consensus 88 ~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~-~d~~~~~Rlrrr-------------------------------- 134 (340)
T 3d3q_A 88 YIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDES-ISEDKMKQVKLK-------------------------------- 134 (340)
T ss_dssp HHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC----CCHHHHHHHHHH--------------------------------
T ss_pred HHHHHHhCCCcEEEECChhhhHHHHHhcccccCCC-CChHHHHHHHHH--------------------------------
Confidence 99999889999999999999999999875 22221 1111 000000
Q ss_pred cchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCchhhhccc
Q 048453 172 PDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGK 228 (236)
Q Consensus 172 ~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~s~~~~~~ 228 (236)
+.. ++..|...+++.|+.+||.+|++|||||++||+||||||..||+++|+|...+
T Consensus 135 l~r-~~~~G~~~l~~~L~~vdP~~a~~I~p~d~~Ri~RALEv~~~tG~~~s~~~~~~ 190 (340)
T 3d3q_A 135 LKE-LEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKVQ 190 (340)
T ss_dssp HHT-TSSSCHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHCSCSHHHHHHH
T ss_pred HHH-HHhcCHHHHHHHHHhhCcHHHhhcCccCchhhhhHHHHHHHhCCChHHHhhhc
Confidence 222 45568889999999999999999999999999999999999999999986543
No 6
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.91 E-value=2e-24 Score=191.13 Aligned_cols=111 Identities=53% Similarity=0.927 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCc-ccccChhHHHHH
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSP-NVEFTAKEFRDS 91 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~-~~~~s~~~~~~~ 91 (236)
++.+++|+||||||||||+..||+.+++++|+.|+.|||+|++|+|++|+.+|+.+++||++++.++ .+.|++.+|...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHhhCCCceEEechHHHHHHHHhcCC
Q 048453 92 AVPLISEILSRDHIPFIVGGTNYYIQALVSPF 123 (236)
Q Consensus 92 ~~~~i~~~~~~~~~~il~GG~~~~irall~~~ 123 (236)
+...|.++..+++.||++||+++|+++++.++
T Consensus 119 a~~~i~~i~~~g~~pIlvGGtglYi~all~g~ 150 (339)
T 3a8t_A 119 AGKAVSEITGRRKLPVLVGGSNSFIHALLVDR 150 (339)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred HHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence 99999999999999999999999999999886
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.65 E-value=6.7e-18 Score=142.68 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=43.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQD 65 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e 65 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++. ..+..+
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~G-----l~~p~~G~I~~~g~~~~--~~~~~~ 76 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGC-----LDKPTEGEVYIDNIKTN--DLDDDE 76 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT-----SSCCSEEEEEETTEECT--TCCHHH
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCceEEEECCEEcc--cCCHHH
Confidence 34578999999999999999999999999 899999999 8999983 444443
No 8
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.64 E-value=3.9e-16 Score=133.04 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=96.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCccc-ccChhHHHHHHH
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV-EFTAKEFRDSAV 93 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~-~~s~~~~~~~~~ 93 (236)
.+++|+||||||||||++.||+.++.++++.|+.++|+|+++++.+++.+++.+++|++++...+.+ .++...|...+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 3789999999999999999999999999999999889999999999999999999999999887766 789999998888
Q ss_pred HHHHHHhhCCCceEEechHHHHHHHHhcC
Q 048453 94 PLISEILSRDHIPFIVGGTNYYIQALVSP 122 (236)
Q Consensus 94 ~~i~~~~~~~~~~il~GG~~~~irall~~ 122 (236)
..+ +++..+..+|++||++.|+++++..
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~ 109 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKS 109 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence 888 8888888899999999999888754
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.62 E-value=1.3e-17 Score=144.24 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=98.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc-----c
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV-----E 82 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~-----~ 82 (236)
...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++........++.. .++++.++. .
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~G-----l~~p~~G~I~~~G~~i~~~~~~~~~~~~----~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNG-----ILKPSSGRILFDNKPIDYSRKGIMKLRE----SIGIVFQDPDNQLFS 99 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTT-----SSCCSEEEEEETTEECCCSHHHHHHHHH----SEEEECSSGGGTCCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHc-----CCCCCCeEEEECCEECCcccccHHHHhC----cEEEEEcCccccccc
Confidence 3567899999999999999999999999 889999999 899998321111112211 244443321 2
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
.++.+..... ......+ ..-....+..++..+ ....+..+.+.++||||+|
T Consensus 100 ~tv~e~l~~~-------~~~~~~~--~~~~~~~~~~~l~~~----~L~~~~~~~~~~LSgGqkQ---------------- 150 (275)
T 3gfo_A 100 ASVYQDVSFG-------AVNMKLP--EDEIRKRVDNALKRT----GIEHLKDKPTHCLSFGQKK---------------- 150 (275)
T ss_dssp SBHHHHHHHH-------HHTSCCC--HHHHHHHHHHHHHHT----TCGGGTTSBGGGSCHHHHH----------------
T ss_pred CcHHHHHHHH-------HHHcCCC--HHHHHHHHHHHHHHc----CCchhhcCCcccCCHHHHH----------------
Confidence 3443332211 1111110 000112234444332 2234445567889999988
Q ss_pred hcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHH-HhCCCc
Q 048453 163 FFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYA-RTGVLP 221 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~-~tg~~~ 221 (236)
+++.+........+.-+|++++. +||..+.++.+.|.-+. ..|.++
T Consensus 151 ------------Rv~iAraL~~~P~lLlLDEPts~-LD~~~~~~i~~~l~~l~~~~g~tv 197 (275)
T 3gfo_A 151 ------------RVAIAGVLVMEPKVLILDEPTAG-LDPMGVSEIMKLLVEMQKELGITI 197 (275)
T ss_dssp ------------HHHHHHHHTTCCSEEEEECTTTT-CCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred ------------HHHHHHHHHcCCCEEEEECcccc-CCHHHHHHHHHHHHHHHhhCCCEE
Confidence 44443444455667788989888 89988888888887775 457653
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.62 E-value=3.8e-17 Score=140.59 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=98.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----ccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEF 83 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~ 83 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++. ..+..++... ++++... ..+
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~G-----l~~p~~G~I~~~g~~~~--~~~~~~~~~~----i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTG-----YLSPSHGECHLLGQNLN--SWQPKALART----RAVMRQYSELAFPF 100 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTS-----SSCCSSCEEEETTEETT--TSCHHHHHHH----EEEECSCCCCCSCC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCCcEEEECCEECC--cCCHHHHhhe----EEEEecCCccCCCC
Confidence 3467899999999999999999999999 889999999 8999984 3444443322 2333221 234
Q ss_pred ChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhh
Q 048453 84 TAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLF 163 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~ 163 (236)
++.+..... .... -..-....+..++..+-+ .++..+.+.++||||+|
T Consensus 101 tv~e~l~~~--------~~~~---~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~Q----------------- 148 (266)
T 4g1u_C 101 SVSEVIQMG--------RAPY---GGSQDRQALQQVMAQTDC----LALAQRDYRVLSGGEQQ----------------- 148 (266)
T ss_dssp BHHHHHHGG--------GTTS---CSTTHHHHHHHHHHHTTC----STTTTSBGGGCCHHHHH-----------------
T ss_pred CHHHHHHhh--------hhhc---CcHHHHHHHHHHHHHcCC----hhHhcCCcccCCHHHHH-----------------
Confidence 444433211 0000 001112334445543322 23334557899999999
Q ss_pred cCCCCCCCcchhHhhCCHHHH------HHHHHccChhHhhccCCCchHHHHHHHHHHHHhC
Q 048453 164 FAGDEPVGPDSDLARDSSSYS------YDLLKDLDPVAANRIHPNNYRKINQYLSLYARTG 218 (236)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l------~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg 218 (236)
++..+..... ...|.-+|++++. +||..+..+.+.|.-+...+
T Consensus 149 -----------Rv~iAraL~~~~~~~~~p~lLllDEPts~-LD~~~~~~i~~~l~~l~~~~ 197 (266)
T 4g1u_C 149 -----------RVQLARVLAQLWQPQPTPRWLFLDEPTSA-LDLYHQQHTLRLLRQLTRQE 197 (266)
T ss_dssp -----------HHHHHHHHHHTCCSSCCCEEEEECCCCSS-CCHHHHHHHHHHHHHHHHHS
T ss_pred -----------HHHHHHHHhcccccCCCCCEEEEeCcccc-CCHHHHHHHHHHHHHHHHcC
Confidence 3333233333 4566789999998 99999999999998776543
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.61 E-value=8.8e-17 Score=138.08 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=40.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~G-----l~~p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNL-----LEDFDEGEIIIDGINLK 89 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTT-----SSCCSEEEEEETTEESS
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHc-----CCCCCCcEEEECCEECC
Confidence 3468999999999999999999999999 889999999 8999984
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.61 E-value=8.4e-17 Score=144.75 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaG-----l~~p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAG-----LETITSGDLFIGEKRMN 68 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT-----SSCCSEEEEEETTEECT
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHc-----CCCCCCeEEEECCEECC
Confidence 34568999999999999999999999999 899999999 8999994
No 13
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.60 E-value=2.8e-17 Score=137.92 Aligned_cols=164 Identities=22% Similarity=0.134 Sum_probs=93.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCc----ccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSP----NVE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~----~~~ 82 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++. ..+..+........++++.+ ...
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~--~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGL-----LDAPTEGKVFLEGKEVD--YTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTT-----SSCCSEEEEEETTEECC--SSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEECC--CCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 34567899999999999999999999999 889999999 8999984 33322211000011233322 223
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRL 162 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~ 162 (236)
+++.+...... .. .+ .+ ..-....+..++..+-+ .+...+.+.++|+||+|
T Consensus 97 ~tv~e~l~~~~----~~--~~-~~--~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~q---------------- 147 (224)
T 2pcj_A 97 LTALENVIVPM----LK--MG-KP--KKEAKERGEYLLSELGL----GDKLSRKPYELSGGEQQ---------------- 147 (224)
T ss_dssp SCHHHHHHHHH----HH--TT-CC--HHHHHHHHHHHHHHTTC----TTCTTCCGGGSCHHHHH----------------
T ss_pred CCHHHHHHhHH----HH--cC-CC--HHHHHHHHHHHHHHcCC----chhhhCChhhCCHHHHH----------------
Confidence 45555443211 11 11 00 00011223444433322 12223446788888877
Q ss_pred hcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 163 FFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
+++..........+.-+|++.+. +|+..+..+.+.|..+...|++
T Consensus 148 ------------rv~laral~~~p~lllLDEPt~~-LD~~~~~~~~~~l~~l~~~g~t 192 (224)
T 2pcj_A 148 ------------RVAIARALANEPILLFADEPTGN-LDSANTKRVMDIFLKINEGGTS 192 (224)
T ss_dssp ------------HHHHHHHTTTCCSEEEEESTTTT-CCHHHHHHHHHHHHHHHHTTCE
T ss_pred ------------HHHHHHHHHcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCCE
Confidence 22222222233456667888877 7888888888777776555654
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.60 E-value=6.6e-17 Score=144.66 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=43.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQD 65 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e 65 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++. ..+..+
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~G-----L~~p~~G~I~i~G~~i~--~~~~~~ 99 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNL-----LERPTEGSVLVDGQELT--TLSESE 99 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT-----SSCCSEEEEEETTEECS--SCCHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhc-----CCCCCceEEEECCEECC--cCCHHH
Confidence 34578999999999999999999999999 899999999 8999994 444433
No 15
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.59 E-value=8.7e-17 Score=143.65 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaG-----l~~p~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAG-----FEQPDSGEISLSGKTIF 69 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHT-----SSCCSEEEEEETTEEEE
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhc-----CCCCCCcEEEECCEECc
Confidence 34568999999999999999999999999 999999999 8999984
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.58 E-value=1.4e-16 Score=136.23 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~G-----l~~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIIST-----LIKPSSGIVTVFGKNVV 80 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTT-----SSCCSEEEEEETTEETT
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEEECCEECC
Confidence 34568999999999999999999999999 889999999 8999984
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.58 E-value=1.8e-16 Score=141.89 Aligned_cols=45 Identities=29% Similarity=0.530 Sum_probs=41.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG-----l~~p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAG-----IYKPTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT-----SSCCSEEEEEETTEECT
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhc-----CCCCCceEEEECCEECC
Confidence 34568999999999999999999999999 889999999 8999984
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.57 E-value=2.2e-16 Score=135.43 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=40.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~G-----l~~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINF-----LEKPSEGAIIVNGQNIN 71 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTT-----SSCCSEEEEEETTEECC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEEcc
Confidence 4568999999999999999999999999 889999999 8999884
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=6.4e-17 Score=140.06 Aligned_cols=166 Identities=17% Similarity=0.018 Sum_probs=97.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc------c
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN------V 81 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~------~ 81 (236)
...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.....+..++.+- ++++.++ .
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~G-----l~~p~~G~I~~~g~~~~~~~~~~~~~~~~----i~~v~Q~~~~~~~~ 112 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNA-----YEPATSGTVNLFGKMPGKVGYSAETVRQH----IGFVSHSLLEKFQE 112 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT-----SSCCSEEEEEETTBCCC---CCHHHHHTT----EEEECHHHHTTSCT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCCeEEEECCEEcccccCCHHHHcCc----EEEEEcCcccccCC
Confidence 3467899999999999999999999999 889999999 8998873102222232221 3333222 1
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhh
Q 048453 82 EFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYR 161 (236)
Q Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~ 161 (236)
.+++.+...... .. ..+.......-....+..++..+- ......+.+.++|+||+|
T Consensus 113 ~ltv~enl~~~~---~~--~~~~~~~~~~~~~~~~~~~l~~~g----l~~~~~~~~~~LSgGqkq--------------- 168 (279)
T 2ihy_A 113 GERVIDVVISGA---FK--SIGVYQDIDDEIRNEAHQLLKLVG----MSAKAQQYIGYLSTGEKQ--------------- 168 (279)
T ss_dssp TSBHHHHHHTTC--------------CCHHHHHHHHHHHHHTT----CGGGTTSBGGGSCHHHHH---------------
T ss_pred CCCHHHHHHhhh---hh--ccccccCCcHHHHHHHHHHHHHcC----ChhHhcCChhhCCHHHHH---------------
Confidence 124433321100 00 000000000001123444444332 223334557889999988
Q ss_pred hhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 162 LFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
+++..........|.-+|++++. +|+..++.+.+.|..+...|+++
T Consensus 169 -------------Rv~lAraL~~~p~lLlLDEPts~-LD~~~~~~l~~~l~~l~~~g~tv 214 (279)
T 2ihy_A 169 -------------RVMIARALMGQPQVLILDEPAAG-LDFIARESLLSILDSLSDSYPTL 214 (279)
T ss_dssp -------------HHHHHHHHHTCCSEEEEESTTTT-CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred -------------HHHHHHHHhCCCCEEEEeCCccc-cCHHHHHHHHHHHHHHHHCCCEE
Confidence 33333333444567778999888 89999999988888776557665
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.57 E-value=4e-16 Score=139.26 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=41.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++..
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG-----l~~p~~G~I~i~g~~i~~ 71 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAG-----LDVPSTGELYFDDRLVAS 71 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHT-----SSCCSEEEEEETTEEEEE
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCceEEEECCEECcc
Confidence 34568999999999999999999999999 899999999 89999853
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.56 E-value=1.9e-16 Score=141.37 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG-----l~~p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAG-----LERPTKGDVWIGGKRVT 80 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHT-----SSCCSEEEEEETTEECT
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCccEEEECCEECC
Confidence 34567899999999999999999999999 889999999 8999984
No 22
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.56 E-value=9.3e-16 Score=130.67 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=99.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc----cc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV----EF 83 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~----~~ 83 (236)
...++|++++|+||||||||||+++|+| ++.++ |+| ++|.++.. .+..++.. .++++.++. .+
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~G-----l~~p~-G~i~~~g~~~~~--~~~~~~~~----~i~~v~q~~~~~~~~ 88 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAG-----MTSGK-GSIQFAGQPLEA--WSATKLAL----HRAYLSQQQTPPFAT 88 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT-----SSCCE-EEEEETTEEGGG--SCHHHHHH----HEEEECSCCCCCTTC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCC-eEEEECCEECCc--CCHHHHhc----eEEEECCCCccCCCC
Confidence 4567899999999999999999999999 88899 999 89999842 23333221 133443222 23
Q ss_pred ChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhh
Q 048453 84 TAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLF 163 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~ 163 (236)
++.+.... ...... . ...+..++..+-+ .+...+...++|+||+|
T Consensus 89 tv~e~l~~--------~~~~~~-----~-~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~q----------------- 133 (249)
T 2qi9_C 89 PVWHYLTL--------HQHDKT-----R-TELLNDVAGALAL----DDKLGRSTNQLSGGEWQ----------------- 133 (249)
T ss_dssp BHHHHHHT--------TCSSTT-----C-HHHHHHHHHHTTC----GGGTTSBGGGCCHHHHH-----------------
T ss_pred cHHHHHHH--------hhccCC-----c-HHHHHHHHHHcCC----hhHhcCChhhCCHHHHH-----------------
Confidence 33333211 000011 1 3334555544322 23334457899999999
Q ss_pred cCCCCCCCcchhHhhCCHHHHHHH-------HHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 164 FAGDEPVGPDSDLARDSSSYSYDL-------LKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~-------L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++........... +.-+|++.+. +|+..+..+.+.|.-+...|++
T Consensus 134 -----------rv~lAraL~~~p~~~~~~~~lllLDEPts~-LD~~~~~~l~~~l~~l~~~g~t 185 (249)
T 2qi9_C 134 -----------RVRLAAVVLQITPQANPAGQLLLLDEPMNS-LDVAQQSALDKILSALSQQGLA 185 (249)
T ss_dssp -----------HHHHHHHHHHHCTTTCTTCCEEEESSTTTT-CCHHHHHHHHHHHHHHHHTTCE
T ss_pred -----------HHHHHHHHHcCCCcCCCCCeEEEEECCccc-CCHHHHHHHHHHHHHHHhCCCE
Confidence 4444444555666 7789999999 9999999999999888655765
No 23
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.56 E-value=2.6e-16 Score=140.69 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=41.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG-----l~~p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAG-----IYKPTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHT-----SSCCSEEEEEETTEECT
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHC-----CCCCCccEEEECCEECC
Confidence 34568999999999999999999999999 899999999 8999984
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.55 E-value=2.5e-16 Score=141.42 Aligned_cols=45 Identities=18% Similarity=0.433 Sum_probs=41.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG-----l~~p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAG-----LEEPTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT-----SSCCSEEEEEETTEECT
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHc-----CCCCCceEEEECCEECC
Confidence 34568999999999999999999999999 899999999 8999984
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.55 E-value=1.6e-16 Score=135.80 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=96.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VE 82 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~ 82 (236)
+...++|++++|+||||||||||+++|+| ++.|++|+| ++|.++. ..+..+.. ...++++.++ ..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~G-----l~~p~~G~i~~~g~~~~--~~~~~~~~---~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITG-----FLKADEGRVYFENKDIT--NKEPAELY---HYGIVRTFQTPQPLKE 96 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTT-----SSCCSEEEEEETTEECT--TCCHHHHH---HHTEEECCCCCGGGGG
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCEECC--CCCHHHHH---hCCEEEEccCCccCCC
Confidence 34567899999999999999999999999 889999999 8999984 22221110 0113333322 22
Q ss_pred cChhHHHHHHHHHHHHHhhCCCceE----------Eec-hHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhh
Q 048453 83 FTAKEFRDSAVPLISEILSRDHIPF----------IVG-GTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTC 151 (236)
Q Consensus 83 ~s~~~~~~~~~~~i~~~~~~~~~~i----------l~G-G~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~ 151 (236)
+++.+..... ........ ... -....+..++..+- ......+.+.++|+||+|
T Consensus 97 ~tv~enl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgGqkQ----- 160 (257)
T 1g6h_A 97 MTVLENLLIG-------EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK----LSHLYDRKAGELSGGQMK----- 160 (257)
T ss_dssp SBHHHHHHGG-------GTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT----CGGGTTSBGGGSCHHHHH-----
T ss_pred CcHHHHHHHH-------HhhhccCcccccccccccCCHHHHHHHHHHHHHHcC----CchhhCCCchhCCHHHHH-----
Confidence 3433332110 00000000 000 01223444444332 233334557889999888
Q ss_pred hcccchhhhhhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 152 ICTLNTVLYRLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
+++.+........+.-+|++++. +|+..+..+.+.|..+...|++
T Consensus 161 -----------------------rv~iAraL~~~p~lllLDEPts~-LD~~~~~~l~~~l~~l~~~g~t 205 (257)
T 1g6h_A 161 -----------------------LVEIGRALMTNPKMIVMDEPIAG-VAPGLAHDIFNHVLELKAKGIT 205 (257)
T ss_dssp -----------------------HHHHHHHHHTCCSEEEEESTTTT-CCHHHHHHHHHHHHHHHHTTCE
T ss_pred -----------------------HHHHHHHHHcCCCEEEEeCCccC-CCHHHHHHHHHHHHHHHHCCCE
Confidence 33333333444566778888888 8998888888888877655654
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.55 E-value=9.4e-16 Score=136.57 Aligned_cols=45 Identities=29% Similarity=0.452 Sum_probs=41.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG-----l~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAG-----FHVPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHT-----SSCCSEEEEEETTEECT
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHc-----CCCCCCcEEEECCEECC
Confidence 34568999999999999999999999999 899999999 8999984
No 27
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.55 E-value=2.5e-16 Score=141.54 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=41.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++..
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaG-----l~~p~~G~I~i~g~~~~~ 69 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAG-----LEEPSRGQIYIGDKLVAD 69 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHT-----SSCCSEEEEEETTEEEEE
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHc-----CCCCCccEEEECCEECcc
Confidence 34567899999999999999999999999 889999999 89999843
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.54 E-value=7.7e-16 Score=131.13 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=90.8
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE--EcCCCCce-ecCeecccCCCChhhhcCCceeeccccCc----cc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI--INADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSP----NV 81 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i--i~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~----~~ 81 (236)
...++|++++|+||||||||||+++|++ + +.+++|+| ++|.++. ..+..++.+. .++++.+ ..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G-----l~~~~p~~G~I~~~g~~~~--~~~~~~~~~~---~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAG-----DPEYTVERGEILLDGENIL--ELSPDERARK---GLFLAFQYPVEVP 93 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHT-----CTTCEEEEEEEEETTEECT--TSCHHHHHHT---TBCCCCCCCC-CC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCceEEEECCEECC--CCCHHHHHhC---cEEEeccCCcccc
Confidence 4567899999999999999999999999 6 68899999 8999984 3333322110 1222221 12
Q ss_pred ccChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcc-cccccccchhhhhcccchhhh
Q 048453 82 EFTAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGS-LSGIKQLFYFTCICTLNTVLY 160 (236)
Q Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~-ls~ge~q~~~~~~~~~~~~~~ 160 (236)
.+++.++...... ..... ... ..-....+..++..+-++ ..+..+.+.+ +|+||+|
T Consensus 94 ~~tv~e~l~~~~~---~~~~~-~~~--~~~~~~~~~~~l~~~gl~---~~~~~~~~~~~LSgGqkQ-------------- 150 (250)
T 2d2e_A 94 GVTIANFLRLALQ---AKLGR-EVG--VAEFWTKVKKALELLDWD---ESYLSRYLNEGFSGGEKK-------------- 150 (250)
T ss_dssp SCBHHHHHHHHHH---HHHTS-CCC--HHHHHHHHHHHHHHHTCC---GGGGGSBTTCC----HHH--------------
T ss_pred CCCHHHHHHHHHH---hhccc-cCC--HHHHHHHHHHHHHHcCCC---hhHhcCCcccCCCHHHHH--------------
Confidence 3455554432110 01110 000 000011233343332221 1222344566 8888888
Q ss_pred hhhcCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 161 RLFFAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
+++..........|.-+|++++. +|+..+.++.+.|..+...|++
T Consensus 151 --------------rv~iAraL~~~p~lllLDEPts~-LD~~~~~~l~~~l~~l~~~g~t 195 (250)
T 2d2e_A 151 --------------RNEILQLLVLEPTYAVLDETDSG-LDIDALKVVARGVNAMRGPNFG 195 (250)
T ss_dssp --------------HHHHHHHHHHCCSEEEEECGGGT-TCHHHHHHHHHHHHHHCSTTCE
T ss_pred --------------HHHHHHHHHcCCCEEEEeCCCcC-CCHHHHHHHHHHHHHHHhcCCE
Confidence 44333444455667778888888 8888888888887766444554
No 29
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.54 E-value=2.2e-16 Score=133.73 Aligned_cols=44 Identities=20% Similarity=0.511 Sum_probs=40.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAG-----LVRAQKGKIIFNGQDIT 71 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT-----SSCCSEEEEEETTEECT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCceEEECCEECC
Confidence 3467899999999999999999999999 889999999 8999984
No 30
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.53 E-value=1.2e-15 Score=129.33 Aligned_cols=43 Identities=30% Similarity=0.587 Sum_probs=39.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++ ++++|+||||||||||+++|+| ++.|++|+| ++|.++.
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAG-----IVKPDRGEVRLNGADIT 63 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHT-----SSCCSEEEEEETTEECT
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEECCEECC
Confidence 34577 9999999999999999999999 889999999 8999984
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.53 E-value=2.1e-15 Score=125.77 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=97.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcc----ccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPN----VEF 83 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~----~~~ 83 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++. . .+. .++++.++ ..+
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G-----l~~p~~G~I~~~g~~~~-----~-~~~-----~i~~v~q~~~~~~~~ 93 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-----K-VKG-----KIFFLPEEIIVPRKI 93 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTT-----SSCCSEEEEEETTEEGG-----G-GGG-----GEEEECSSCCCCTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCeEEEECCEEhh-----h-hcC-----cEEEEeCCCcCCCCC
Confidence 4567899999999999999999999999 889999999 8999883 1 111 13333222 234
Q ss_pred ChhHHHHHHHHHHHHHhhCCCceEEechHHHHHHHHhcCCCCCCCCcccchhhhcccccccccchhhhhcccchhhhhhh
Q 048453 84 TAKEFRDSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLDDSAEDMDESCFGSLSGIKQLFYFTCICTLNTVLYRLF 163 (236)
Q Consensus 84 s~~~~~~~~~~~i~~~~~~~~~~il~GG~~~~irall~~~l~d~~~~~ld~~~~~~ls~ge~q~~~~~~~~~~~~~~~~~ 163 (236)
++.+...... ... +. . . ....+..++..+-++ .. .+...++|+||+|
T Consensus 94 tv~enl~~~~----~~~--~~-~---~-~~~~~~~~l~~~gl~----~~-~~~~~~LSgGqkq----------------- 140 (214)
T 1sgw_A 94 SVEDYLKAVA----SLY--GV-K---V-NKNEIMDALESVEVL----DL-KKKLGELSQGTIR----------------- 140 (214)
T ss_dssp BHHHHHHHHH----HHT--TC-C---C-CHHHHHHHHHHTTCC----CT-TSBGGGSCHHHHH-----------------
T ss_pred CHHHHHHHHH----Hhc--CC-c---h-HHHHHHHHHHHcCCC----cC-CCChhhCCHHHHH-----------------
Confidence 5555443211 111 10 0 0 123344555443222 22 3447899999998
Q ss_pred cCCCCCCCcchhHhhCCHHHHHHHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 164 FAGDEPVGPDSDLARDSSSYSYDLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
++...........+.-+|++.+. +|+..+.++.+.|..+...|++
T Consensus 141 -----------rv~laraL~~~p~lllLDEPts~-LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 141 -----------RVQLASTLLVNAEIYVLDDPVVA-IDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp -----------HHHHHHHTTSCCSEEEEESTTTT-SCTTTHHHHHHHHHHHHHHHSE
T ss_pred -----------HHHHHHHHHhCCCEEEEECCCcC-CCHHHHHHHHHHHHHHHhCCCE
Confidence 32222222334567788999988 9999999999999887655654
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.52 E-value=8e-16 Score=132.29 Aligned_cols=45 Identities=36% Similarity=0.550 Sum_probs=39.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE--EcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI--INADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i--i~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ + +.+++|+| ++|.++.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G-----l~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAG-----REDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT-----CTTCEEEEEEEEETTEEGG
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCCeEEEECCEECC
Confidence 34568999999999999999999999999 6 46889999 8999984
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.50 E-value=1.3e-14 Score=127.00 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=75.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---ccC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EFT 84 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~s 84 (236)
...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++. ..+..+++.. ++++.++. ..+
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~g-----l~~p~~G~I~i~G~~i~--~~~~~~~r~~----i~~v~Q~~~lf~~T 143 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFR-----FYDISSGCIRIDGQDIS--QVTQASLRSH----IGVVPQDTVLFNDT 143 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTT-----SSCCSEEEEEETTEETT--SBCHHHHHHT----EEEECSSCCCCSEE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHc-----CCCCCCcEEEECCEEcc--cCCHHHHhcc----eEEEecCCccCccc
Confidence 3568899999999999999999999999 899999999 8999994 4444433221 22221110 011
Q ss_pred hhHHH------------HHHH------HHHHHHhh------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccch
Q 048453 85 AKEFR------------DSAV------PLISEILS------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDE 134 (236)
Q Consensus 85 ~~~~~------------~~~~------~~i~~~~~------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~ 134 (236)
+.+.. ..+. +.+..+.. .....-++||+.+++ ||++.+ +++|||++++|.
T Consensus 144 v~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~ 223 (306)
T 3nh6_A 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223 (306)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCH
T ss_pred HHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 11111 1111 11111110 011234899999986 999966 779999999997
Q ss_pred hh
Q 048453 135 SC 136 (236)
Q Consensus 135 ~~ 136 (236)
..
T Consensus 224 ~~ 225 (306)
T 3nh6_A 224 SN 225 (306)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 34
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.50 E-value=8.7e-15 Score=124.45 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=74.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~ 83 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++. ..+..++... ++++.+.. ..
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~I~i~g~~~~--~~~~~~~~~~----i~~v~Q~~~l~~~ 97 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQR-----FYIPENGQVLIDGHDLA--LADPNWLRRQ----VGVVLQDNVLLNR 97 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTT-----SSCCSEEEEEETTEETT--TSCHHHHHHH----EEEECSSCCCTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEEhh--hCCHHHHHhc----EEEEeCCCccccc
Confidence 34567899999999999999999999999 889999999 8999984 2232222110 11111110 01
Q ss_pred ChhHHH---------HHHHHHH-----HHHhhC----------CCceEEechHHHHH---HHHhcC---CCCCCCCcccc
Q 048453 84 TAKEFR---------DSAVPLI-----SEILSR----------DHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMD 133 (236)
Q Consensus 84 s~~~~~---------~~~~~~i-----~~~~~~----------~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld 133 (236)
++.+.. ..+.+.+ .+...+ ....-++||+.+++ ++++.+ +++|||++++|
T Consensus 98 tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD 177 (247)
T 2ff7_A 98 SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177 (247)
T ss_dssp BHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCC
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 221111 0111111 122221 11236899999986 999966 67999999999
Q ss_pred hhh
Q 048453 134 ESC 136 (236)
Q Consensus 134 ~~~ 136 (236)
...
T Consensus 178 ~~~ 180 (247)
T 2ff7_A 178 YES 180 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.49 E-value=1.1e-14 Score=123.36 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=41.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.+++|+| ++|.++.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLER-----FYQPTAGEITIDGQPID 67 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTT-----SSCCSBSCEEETTEEST
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCcEEEECCEEhh
Confidence 34578999999999999999999999999 889999999 8999984
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.49 E-value=2.1e-15 Score=129.61 Aligned_cols=45 Identities=33% Similarity=0.455 Sum_probs=40.9
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|+| ++.+++|+| ++|.++.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G-----l~~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT-----SSCCSEEEEEETTEECC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhC-----CCCCCCcEEEECCEECc
Confidence 34578999999999999999999999999 889999999 8998873
No 37
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.46 E-value=1.8e-14 Score=124.09 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=74.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~ 83 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.. .+...+... ++++.++. ..
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~G-----l~~p~~G~I~~~g~~i~~--~~~~~~~~~----i~~v~Q~~~l~~~ 107 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQN-----LYQPTGGKVLLDGEPLVQ--YDHHYLHTQ----VAAVGQEPLLFGR 107 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT-----SSCCSEEEEEETTEEGGG--BCHHHHHHH----EEEECSSCCCCSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCCEEEECCEEccc--CCHHHHhcc----EEEEecCCccccc
Confidence 34578999999999999999999999999 889999999 89999843 222222110 11111110 01
Q ss_pred ChhHHHH-------------H------HHHHHHHH---hh---CCCceEEechHHHHH---HHHhcC---CCCCCCCccc
Q 048453 84 TAKEFRD-------------S------AVPLISEI---LS---RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDM 132 (236)
Q Consensus 84 s~~~~~~-------------~------~~~~i~~~---~~---~~~~~il~GG~~~~i---rall~~---~l~d~~~~~l 132 (236)
++.+... . +.+.++.+ +. ....--++||+.+++ +|++.+ +++|||++++
T Consensus 108 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L 187 (271)
T 2ixe_A 108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187 (271)
T ss_dssp BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 2211111 0 01112211 00 111224899999985 999966 6799999999
Q ss_pred chhh
Q 048453 133 DESC 136 (236)
Q Consensus 133 d~~~ 136 (236)
|...
T Consensus 188 D~~~ 191 (271)
T 2ixe_A 188 DAGN 191 (271)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9764
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.43 E-value=1.3e-13 Score=118.26 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=72.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeecc-ccCccc--cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLG-TVSPNV--EF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~-~v~~~~--~~ 83 (236)
+...+ |++++|+||||||||||+++|++ ++ |++|+| ++|.++... . .+.. ++ ++.++. ..
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~G-----l~-p~~G~I~~~g~~~~~~---~-~~~~-----i~~~v~Q~~~l~~ 88 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISG-----LL-PYSGNIFINGMEVRKI---R-NYIR-----YSTNLPEAYEIGV 88 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTT-----SS-CCEEEEEETTEEGGGC---S-CCTT-----EEECCGGGSCTTS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhC-----CC-CCCcEEEECCEECcch---H-Hhhh-----eEEEeCCCCccCC
Confidence 34568 99999999999999999999999 88 999999 899988432 1 1111 22 221111 33
Q ss_pred ChhHHHHH-----------HHHHHHHHhh-----CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchh
Q 048453 84 TAKEFRDS-----------AVPLISEILS-----RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDES 135 (236)
Q Consensus 84 s~~~~~~~-----------~~~~i~~~~~-----~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~ 135 (236)
++.+.... +.+.++.+-- ....--++||+.+++ ++++.+ +++|||++++|..
T Consensus 89 tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 162 (263)
T 2pjz_A 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162 (263)
T ss_dssp BHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHH
T ss_pred cHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHH
Confidence 44333321 1222222110 111224799999885 888866 6789999999876
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.41 E-value=3.1e-14 Score=128.53 Aligned_cols=115 Identities=19% Similarity=0.343 Sum_probs=73.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~ 83 (236)
+...++|++++|+||||||||||+++|++ ++. ++|+| ++|.++. ..+..++.+- ++++.++. ..
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaG-----l~~-~~G~I~i~G~~i~--~~~~~~~rr~----ig~v~Q~~~lf~~ 108 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLR-----LLN-TEGEIQIDGVSWD--SITLEQWRKA----FGVIPQKVFIFSG 108 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHT-----CSE-EEEEEEESSCBTT--SSCHHHHHHT----EEEESCCCCCCSE
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhC-----CCC-CCeEEEECCEECC--cCChHHHhCC----EEEEcCCcccCcc
Confidence 34578999999999999999999999999 777 88999 8999984 3333332211 12221110 01
Q ss_pred ChhHHH--------HHHHHHHH-----HHhhCCCceE------------EechHHHHH---HHHhcC---CCCCCCCccc
Q 048453 84 TAKEFR--------DSAVPLIS-----EILSRDHIPF------------IVGGTNYYI---QALVSP---FLLDDSAEDM 132 (236)
Q Consensus 84 s~~~~~--------~~~~~~i~-----~~~~~~~~~i------------l~GG~~~~i---rall~~---~l~d~~~~~l 132 (236)
++.+.. ..+.+.++ .... +.|. ++||+.+++ ||++.+ +++|||++++
T Consensus 109 tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~--~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~L 186 (390)
T 3gd7_A 109 TFRKNLDPNAAHSDQEIWKVADEVGLRSVIE--QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 186 (390)
T ss_dssp EHHHHHCTTCCSCHHHHHHHHHHTTCHHHHT--TSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHS
T ss_pred CHHHHhhhccccCHHHHHHHHHHhCCHHHHh--hcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 222111 11111221 1111 2221 899999986 999976 7799999999
Q ss_pred chhh
Q 048453 133 DESC 136 (236)
Q Consensus 133 d~~~ 136 (236)
|...
T Consensus 187 D~~~ 190 (390)
T 3gd7_A 187 DPVT 190 (390)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9763
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.41 E-value=1.9e-13 Score=116.91 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=72.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---cc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EF 83 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~ 83 (236)
+...++|++++|+||||||||||+++|++ ++.+ +|+| ++|.++.. .+..++... ++++.++. ..
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~~-~G~I~i~g~~i~~--~~~~~~~~~----i~~v~Q~~~l~~~ 107 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYR-----FYDA-EGDIKIGGKNVNK--YNRNSIRSI----IGIVPQDTILFNE 107 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT-----SSCC-EEEEEETTEEGGG--BCHHHHHTT----EEEECSSCCCCSE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhc-----cCCC-CeEEEECCEEhhh--cCHHHHhcc----EEEEcCCCccccc
Confidence 34578999999999999999999999999 6665 7999 89999842 222222211 12221110 01
Q ss_pred ChhHHH---------HHHHHHHH-----HHhh----------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccc
Q 048453 84 TAKEFR---------DSAVPLIS-----EILS----------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMD 133 (236)
Q Consensus 84 s~~~~~---------~~~~~~i~-----~~~~----------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld 133 (236)
++.+.. ..+.+.++ +... .....-++||+.+++ ++++.+ +++|||++++|
T Consensus 108 tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 187 (260)
T 2ghi_A 108 TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187 (260)
T ss_dssp EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC
T ss_pred CHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 221111 11111111 1111 012235899999985 999966 67999999999
Q ss_pred hhh
Q 048453 134 ESC 136 (236)
Q Consensus 134 ~~~ 136 (236)
...
T Consensus 188 ~~~ 190 (260)
T 2ghi_A 188 SKT 190 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 41
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.41 E-value=3.4e-14 Score=121.19 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=34.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
...++|++++|+||||||||||+++|++ ++.|++|.|+
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~I~ 63 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLG-----IHRPIQGKIE 63 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTT-----SSCCSEEEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEE
Confidence 4567899999999999999999999999 8889999986
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.40 E-value=3.4e-13 Score=127.49 Aligned_cols=45 Identities=29% Similarity=0.421 Sum_probs=41.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.++.
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g-----~~~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTR-----FYDVDSGSICLDGHDVR 408 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCCEEEECCEEhh
Confidence 34568999999999999999999999999 899999999 8999984
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.36 E-value=3.9e-13 Score=127.07 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=74.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---ccC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EFT 84 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~s 84 (236)
...++|++++|+||||||||||+++|+| ++.|++|+| ++|.++. ..+..++.+. ++++.++. ..+
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g-----~~~p~~G~i~~~g~~~~--~~~~~~~~~~----i~~v~Q~~~l~~~t 432 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITR-----FYDIDEGHILMDGHDLR--EYTLASLRNQ----VALVSQNVHLFNDT 432 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTT-----TTCCSEEEEEETTEETT--TBCHHHHHHT----EEEECSSCCCCSSB
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh-----ccCCCCCeEEECCEEcc--ccCHHHHHhh----CeEEccCCcCCCCC
Confidence 3568999999999999999999999999 889999999 8999984 3333333211 12221110 011
Q ss_pred hhHHH----------HHHHHHHH-----HHhhC----------CCceEEechHHHHH---HHHhcC---CCCCCCCcccc
Q 048453 85 AKEFR----------DSAVPLIS-----EILSR----------DHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMD 133 (236)
Q Consensus 85 ~~~~~----------~~~~~~i~-----~~~~~----------~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld 133 (236)
+.+.. +...+.++ +...+ .+..-++||+.+++ ||++.+ +++|||++++|
T Consensus 433 v~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD 512 (582)
T 3b60_A 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_dssp HHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCC
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 11111 11111111 11110 11235799999986 999966 67999999999
Q ss_pred hhh
Q 048453 134 ESC 136 (236)
Q Consensus 134 ~~~ 136 (236)
...
T Consensus 513 ~~~ 515 (582)
T 3b60_A 513 TES 515 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.34 E-value=4.4e-13 Score=127.02 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=73.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc---ccC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV---EFT 84 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~---~~s 84 (236)
...++|++++|+||||||||||+++|+| ++.|++|+| ++|.++. ..+..++... ++++.++. ..+
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g-----~~~p~~G~i~~~g~~i~--~~~~~~~~~~----i~~v~Q~~~l~~~t 433 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLR-----LYDPASGTISLDGHDIR--QLNPVWLRSK----IGTVSQEPILFSCS 433 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTT-----SSCCSEEEEEETTEETT--TBCHHHHHHS----EEEECSSCCCCSSB
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc-----CcCCCCcEEEECCEEhh--hCCHHHHHhc----eEEEccCCcccCCC
Confidence 3568999999999999999999999999 889999999 8999984 3333333211 12221110 001
Q ss_pred hhHHH------------HHHHHHHHH-----HhhC----CC------ceEEechHHHHH---HHHhcC---CCCCCCCcc
Q 048453 85 AKEFR------------DSAVPLISE-----ILSR----DH------IPFIVGGTNYYI---QALVSP---FLLDDSAED 131 (236)
Q Consensus 85 ~~~~~------------~~~~~~i~~-----~~~~----~~------~~il~GG~~~~i---rall~~---~l~d~~~~~ 131 (236)
+.+.. +.+.+.++. .... .. ..-++||+.+++ ||++.+ +++|||+++
T Consensus 434 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~ 513 (595)
T 2yl4_A 434 IAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 513 (595)
T ss_dssp HHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSS
T ss_pred HHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccC
Confidence 11111 111111111 1111 01 134899999986 999966 678999999
Q ss_pred cchhh
Q 048453 132 MDESC 136 (236)
Q Consensus 132 ld~~~ 136 (236)
+|...
T Consensus 514 LD~~~ 518 (595)
T 2yl4_A 514 LDAEN 518 (595)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 99763
No 45
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.33 E-value=2.9e-13 Score=128.40 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=41.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.|+.
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g-----~~~p~~G~i~~~g~~i~ 420 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMR-----FYDVDRGQILVDGIDIR 420 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTT-----SSCCSEEEEEETTEEGG
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhc-----CcCCCCeEEEECCEEhh
Confidence 34578999999999999999999999999 899999999 8999994
No 46
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.32 E-value=3.3e-13 Score=127.50 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=40.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
...++|++++|+||||||||||+++|+| ++.|++|+| ++|.++.
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g-----~~~p~~G~i~~~g~~~~ 406 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPR-----FYDVTSGQILIDGHNIK 406 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTT-----SSCCSEEEEEETTEEGG
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhc-----CCCCCCcEEEECCEEhh
Confidence 3468999999999999999999999999 889999999 8999994
No 47
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.30 E-value=3e-13 Score=128.04 Aligned_cols=121 Identities=31% Similarity=0.434 Sum_probs=74.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcC----Cc---eeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKG----VP---HHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~----~~---~~li~~v~~~ 80 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.|+. ..+..++++ ++ +.+-+.+..+
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g-----~~~~~~G~i~i~g~~i~--~~~~~~~r~~i~~v~Q~~~lf~~tv~en 436 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPR-----LIDPERGRVEVDELDVR--TVKLKDLRGHISAVPQETVLFSGTIKEN 436 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTT-----SSCCSEEEEEESSSBGG--GBCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CccCCCcEEEECCEEcc--cCCHHHHHhheEEECCCCcCcCccHHHH
Confidence 3468899999999999999999999999 889999999 8999994 344433321 11 1111111000
Q ss_pred -----cccChhHHHHHH-----HHHHHHHhh------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 -----VEFTAKEFRDSA-----VPLISEILS------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 -----~~~s~~~~~~~~-----~~~i~~~~~------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
...+..+..+.+ .+.+..+.. ..+..-++||+.+++ ||++.+ +++|||++++|..+
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 011111111111 111111110 011124789999986 999976 67999999999764
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.30 E-value=1.1e-12 Score=134.31 Aligned_cols=121 Identities=20% Similarity=0.361 Sum_probs=83.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCC-------ceeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGV-------PHHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~-------~~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|.+ ++.|++|+| ++|.|| .+.+..+++.- |+.|-+++..|
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~I~iDG~di--~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLER-----FYDTLGGEIFIDGSEI--KTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTT-----SSCCSSSEEEETTEET--TTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhc-----CccCCCCEEEECCEEh--hhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence 3578999999999999999999999999 999999999 899999 55666655432 22233333211
Q ss_pred -------cccChhHHHHHH-----HHHHHHHhhCCCceE------EechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 -------VEFTAKEFRDSA-----VPLISEILSRDHIPF------IVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 -------~~~s~~~~~~~~-----~~~i~~~~~~~~~~i------l~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
..++..+..+.+ .+.|..+......++ ++||+.|++ ||++++ +++||+++++|.++
T Consensus 1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 122322222211 233443333334444 789999986 999977 77999999999764
No 49
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.29 E-value=1.4e-12 Score=109.51 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=36.3
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
...++|++++|+||||||||||+++|++ ++.|++|+| ++|
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~g 69 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMG-----ELEPSEGKIKHSG 69 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT-----SSCCSEEEEEECS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCcCCccEEEECC
Confidence 3467899999999999999999999999 889999999 666
No 50
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.28 E-value=5.6e-13 Score=112.51 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=68.8
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCce-eeccccCcccccCh
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPH-HLLGTVSPNVEFTA 85 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~-~li~~v~~~~~~s~ 85 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|. |+.....+ .++. ...+.+.....+..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~I~~~g~-i~~v~Q~~----~~~~~tv~enl~~~~~~~~ 94 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLA-----EMDKVEGHVAIKGS-VAYVPQQA----WIQNDSLRENILFGCQLEE 94 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTT-----CSEEEEEEEEECSC-EEEECSSC----CCCSEEHHHHHHTTSCCCT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCCceEEECCE-EEEEcCCC----cCCCcCHHHHhhCccccCH
Confidence 34568999999999999999999999999 888999999 6662 21110000 0000 00010100000111
Q ss_pred hHHHHHHHHHH--HHHhh----------CCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 86 KEFRDSAVPLI--SEILS----------RDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 86 ~~~~~~~~~~i--~~~~~----------~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
.....+.+.+ .+.+. .....-++||+.+++ ++++.+ +++|||++++|...
T Consensus 95 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 95 -PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162 (237)
T ss_dssp -THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred -HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1111111111 11111 122346899999985 999966 67999999999864
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.25 E-value=7.7e-12 Score=128.03 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=82.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcC-------CceeeccccCcc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKG-------VPHHLLGTVSPN 80 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~-------~~~~li~~v~~~ 80 (236)
...++|+.++|+||||||||||++.|.+ ++.+++|+| ++|.|| ...+...++. -++.+-+++..|
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~-----~~~~~~G~I~idG~~i--~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eN 511 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLR-----YYDVLKGKITIDGVDV--RDINLEFLRKNVAVVSQEPALFNCTIEEN 511 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTT-----SSCCSEEEEEETTEET--TTSCHHHHHHHEEEECSSCCCCSEEHHHH
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhcc-----ccccccCcccCCCccc--hhccHHHHhhcccccCCcceeeCCchhHH
Confidence 3468999999999999999999999999 889999999 899999 4555554432 222233333111
Q ss_pred -----cccChhHHHHHH-----HHHHHHHhhCCCceE------EechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 81 -----VEFTAKEFRDSA-----VPLISEILSRDHIPF------IVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 81 -----~~~s~~~~~~~~-----~~~i~~~~~~~~~~i------l~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+..+..+..+.+ .+.|..+.......+ ++||+.+++ ||++.+ +++||+++++|.++
T Consensus 512 I~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 512 ISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp HHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred HhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHH
Confidence 122323332222 234444444334443 789999986 999977 77999999999753
No 52
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.23 E-value=3.1e-12 Score=111.15 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=36.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
...++|++++|+||||||||||+++|+| ++.+++|+| ++|
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~G-----l~~p~~G~I~~~g 99 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMG-----ELEPSEGKIKHSG 99 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTT-----SSCEEEEEEECCS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCCcEEEECC
Confidence 3568999999999999999999999999 888999999 565
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.22 E-value=1.8e-12 Score=121.54 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.++|++++|+||||||||||+++|++ ++.+++|.| +.+..|
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~G-----l~~p~~G~i~~~~~~i 332 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVG-----EITADEGSVTPEKQIL 332 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT-----SSCCSBCCEESSCCCE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCcEEEECCeee
Confidence 46899999999999999999999999 889999999 555554
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.20 E-value=1.9e-12 Score=121.48 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=33.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
...+|++++|+||||||||||+++|+| ++.|++|.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~G-----l~~p~~G~~ 78 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAG-----QLIPNLCGD 78 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHT-----SSCCCTTTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCCcc
Confidence 468999999999999999999999999 888898874
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.19 E-value=4e-12 Score=119.17 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
..+|++++|+||||||||||+++|+| ++.+++|.|+
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~G-----l~~p~~G~i~ 344 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAG-----VEEPTEGKIE 344 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT-----SSCCSBCCCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEE
Confidence 46899999999999999999999999 8889999885
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.18 E-value=2.3e-12 Score=122.36 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=33.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
..++|++++|+||||||||||+++|+| ++.|++|.+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~G-----ll~p~~G~~ 148 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAG-----QLIPNLCED 148 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTT-----SSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhC-----CCCCCCCcc
Confidence 468999999999999999999999999 888898874
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.18 E-value=6.8e-12 Score=117.62 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.++|++++|+||||||||||+++|++ ++.|++|.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G-----l~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG-----EIIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT-----SSCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc-----CCCCCCCcc
Confidence 46899999999999999999999999 888999976
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.17 E-value=2.6e-12 Score=122.03 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
..+|++++|+||||||||||+++|+| ++.+++|.|+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~G-----l~~p~~G~I~ 414 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAG-----VEEPTEGKVE 414 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT-----SSCCSBSCCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCceEEE
Confidence 46899999999999999999999999 8889999884
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.17 E-value=9.5e-12 Score=127.02 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=76.6
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCcccc---cC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVE---FT 84 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~---~s 84 (236)
...++|++++|+||||||||||+++|++ ++.+++|+| ++|.|+. ..+..+++.. ++++.++.. -+
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g-----~~~~~~G~i~i~g~~i~--~~~~~~~r~~----i~~v~Q~~~l~~~t 479 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQR-----LYDPLDGMVSIDGQDIR--TINVRYLREI----IGVVSQEPVLFATT 479 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTT-----SSCCSEEEEEETTEEGG--GSCHHHHHHH----EEEECSSCCCCSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCCeEEEECCEEHH--hCCHHHHHhh----eEEEcCCCccCCcc
Confidence 3568999999999999999999999999 889999999 8999994 3444443321 233322110 12
Q ss_pred hhH-------------HHHHH-----HHHHHHHhhCC------CceEEechHHHHH---HHHhcC---CCCCCCCcccch
Q 048453 85 AKE-------------FRDSA-----VPLISEILSRD------HIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDE 134 (236)
Q Consensus 85 ~~~-------------~~~~~-----~~~i~~~~~~~------~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~ 134 (236)
+.+ ....+ .+.+..+.... +..-++||+.+++ ||++.+ +++|||++++|.
T Consensus 480 i~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~ 559 (1284)
T 3g5u_A 480 IAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559 (1284)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 211 11111 11222221111 1124799999986 999966 679999999997
Q ss_pred hh
Q 048453 135 SC 136 (236)
Q Consensus 135 ~~ 136 (236)
.+
T Consensus 560 ~~ 561 (1284)
T 3g5u_A 560 ES 561 (1284)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 60
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.10 E-value=1.9e-11 Score=100.50 Aligned_cols=72 Identities=31% Similarity=0.368 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCee---cccCCCChhhhcCCceee----ccccCcccccCh
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLD---VLTNKVSLQDQKGVPHHL----LGTVSPNVEFTA 85 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~d---I~t~~~~~~e~~~~~~~l----i~~v~~~~~~s~ 85 (236)
.|..++|+||||||||||+..|+.+.. ++++.|+.+||++.+ |++++++ ++|++ ++++++.+.|++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~~ 105 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFGA 105 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCCH
Confidence 467799999999999999999999877 999999999999888 8888875 78998 899999888988
Q ss_pred hHHHHH
Q 048453 86 KEFRDS 91 (236)
Q Consensus 86 ~~~~~~ 91 (236)
..|...
T Consensus 106 ~~f~~~ 111 (205)
T 2qmh_A 106 GAVRED 111 (205)
T ss_dssp TSBCSC
T ss_pred HHHHhc
Confidence 887643
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.09 E-value=6.6e-11 Score=120.87 Aligned_cols=118 Identities=23% Similarity=0.327 Sum_probs=76.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecccCCCChhhhcCCceeeccccCccc-----
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLTNKVSLQDQKGVPHHLLGTVSPNV----- 81 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~----- 81 (236)
+...++|++++|+||||||||||+++|++ ++.|++|+| ++|.|+. ..+..+++.- ++++.++.
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g-----~~~p~~G~I~i~g~~i~--~~~~~~~r~~----i~~v~Q~~~l~~~ 1121 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLER-----FYDPMAGSVFLDGKEIK--QLNVQWLRAQ----LGIVSQEPILFDC 1121 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTT-----SSCCSEEEEESSSSCTT--SSCHHHHTTS----CEEEESSCCCCSS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc-----CcCCCCCEEEECCEEcc--cCCHHHHHhc----eEEECCCCccccc
Confidence 34568899999999999999999999999 889999999 8999994 4444444322 22221110
Q ss_pred -------------ccChhHHHHHHHH-HHHHHhhCC----------CceEEechHHHHH---HHHhcC---CCCCCCCcc
Q 048453 82 -------------EFTAKEFRDSAVP-LISEILSRD----------HIPFIVGGTNYYI---QALVSP---FLLDDSAED 131 (236)
Q Consensus 82 -------------~~s~~~~~~~~~~-~i~~~~~~~----------~~~il~GG~~~~i---rall~~---~l~d~~~~~ 131 (236)
..+..+....+.. .+.+..... +.--++||+.+++ |+++.+ +++|||+++
T Consensus 1122 ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~ 1201 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201 (1284)
T ss_dssp BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSS
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 1111111111110 011222111 1124799999986 999966 679999999
Q ss_pred cchhh
Q 048453 132 MDESC 136 (236)
Q Consensus 132 ld~~~ 136 (236)
+|..+
T Consensus 1202 lD~~~ 1206 (1284)
T 3g5u_A 1202 LDTES 1206 (1284)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 99764
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.08 E-value=6.7e-11 Score=112.31 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
..+|++++|+||||||||||+++|++ ++.|++|.|
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~G-----ll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAG-----KQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT-----SSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhc-----CCCCCCceE
Confidence 57899999999999999999999999 888999987
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.03 E-value=8.2e-11 Score=111.70 Aligned_cols=114 Identities=21% Similarity=0.346 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcC-Cceeecccc--CcccccChhHH
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKG-VPHHLLGTV--SPNVEFTAKEF 88 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~-~~~~li~~v--~~~~~~s~~~~ 88 (236)
.+|++++|+||||||||||+++|+| ++.+++|+......++... ..... ........+ .....+....+
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~G-----l~~p~~G~~~~~~~i~~~~---q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 447 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAG-----ALKPDEGQDIPKLNVSMKP---QKIAPKFPGTVRQLFFKKIRGQFLNPQF 447 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHT-----SSCCSBCCCCCSCCEEEEC---SSCCCCCCSBHHHHHHHHCSSTTTSHHH
T ss_pred ccceEEEEECCCCCcHHHHHHHHhc-----CCCCCCCcCccCCcEEEec---ccccccCCccHHHHHHHHhhcccccHHH
Confidence 3458999999999999999999999 8888888643222221000 00000 000000000 00000111111
Q ss_pred HHHHHHHHHHHh----hCCCceEEechHHHHH---HHHhcC---CCCCCCCcccchhh
Q 048453 89 RDSAVPLISEIL----SRDHIPFIVGGTNYYI---QALVSP---FLLDDSAEDMDESC 136 (236)
Q Consensus 89 ~~~~~~~i~~~~----~~~~~~il~GG~~~~i---rall~~---~l~d~~~~~ld~~~ 136 (236)
+.+.++.+- .....--++||+.+++ ++++.+ +++|||++++|...
T Consensus 448 ---~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~ 502 (608)
T 3j16_B 448 ---QTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502 (608)
T ss_dssp ---HHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHH
T ss_pred ---HHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence 111222221 1122335899999985 888866 67999999999763
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.95 E-value=4.1e-11 Score=114.97 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 188 LKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 188 L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
|.-+|++++. +||.+..++.+.|.-+...|.+
T Consensus 225 lLlLDEPtsg-LD~~~~~~l~~~l~~l~~~g~t 256 (670)
T 3ux8_A 225 LYVLDEPSIG-LHQRDNDRLIATLKSMRDLGNT 256 (670)
T ss_dssp EEEEECTTTT-CCGGGHHHHHHHHHHHHHTTCE
T ss_pred EEEEECCccC-CCHHHHHHHHHHHHHHHHcCCE
Confidence 7788999998 9999999999999888776765
No 65
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=5.7e-10 Score=91.68 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhH----
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKE---- 87 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~---- 87 (236)
++|++++|+||||||||||++.|++.++.. +......++.++...+..++.|++++............
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~ 77 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEY 77 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEE
Confidence 579999999999999999999999955321 23344455566666677777666544321111000000
Q ss_pred ------HHHHHHHHHHHHhhCCCceEE---echHHHHHH
Q 048453 88 ------FRDSAVPLISEILSRDHIPFI---VGGTNYYIQ 117 (236)
Q Consensus 88 ------~~~~~~~~i~~~~~~~~~~il---~GG~~~~ir 117 (236)
+.......+.+++..++.+++ ..|.....+
T Consensus 78 ~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~ 116 (208)
T 3tau_A 78 AEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRK 116 (208)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHH
T ss_pred EEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHH
Confidence 000112356777888888887 455554433
No 66
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.81 E-value=1.2e-09 Score=89.79 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=55.7
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeeccccCcccccChhH
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLGTVSPNVEFTAKE 87 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~~v~~~~~~s~~~ 87 (236)
.|+..+|++++|+||||||||||++.|++.++..+ ......+|.++...+..++.+++++.-.....+....
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~--------~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~ 84 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKF--------VYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANE 84 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccE--------EeeecccccCCcCCeeccccceeccHHHhhhhhhhhh
Confidence 45667899999999999999999999998554222 2233345566666677777666554322111110001
Q ss_pred HH----------HHHHHHHHHHhhCCCceEEe
Q 048453 88 FR----------DSAVPLISEILSRDHIPFIV 109 (236)
Q Consensus 88 ~~----------~~~~~~i~~~~~~~~~~il~ 109 (236)
|. -.....+++++..++.+++.
T Consensus 85 fle~~~~~~n~YGt~~~~v~~~l~~G~~vild 116 (197)
T 3ney_A 85 FLEFGSYQGNMFGTKFETVHQIHKQNKIAILD 116 (197)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred hhhhhhhhceecccchhhHHHHHhcCCeEEEE
Confidence 10 01134577778888887764
No 67
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.79 E-value=1.4e-09 Score=86.18 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=37.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
..++|++++|+||||||||||+++|++ ++ +++|.| +.|.++.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g-----~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ-----GI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH-----HT-TCCSCCCCCTTTCE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHH-----hC-CCCCeEEECCEeee
Confidence 458899999999999999999999999 77 788988 6777763
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.79 E-value=8.9e-10 Score=87.86 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
...++|++++|+||||||||||++++.+
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3456899999999999999999998643
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.75 E-value=4.7e-09 Score=86.95 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=33.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKV 61 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~ 61 (236)
+...++|++++|+||||||||||+++|++ ++ + |.++-|.++.+..+
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g-----~~-p--G~i~~g~~~~~~~~ 62 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLN-----EF-P--NYFYFSVSCTTRKK 62 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHH-----HS-T--TTEEECCCEECSCC
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHh-----hC-C--CcEEEeecccCCCC
Confidence 45578899999999999999999999999 54 3 67733777755443
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.71 E-value=5.6e-09 Score=94.81 Aligned_cols=36 Identities=33% Similarity=0.360 Sum_probs=31.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+++|+||||||||||+++|+| ++.+++|.| +.|.++
T Consensus 71 ~valvG~nGaGKSTLln~L~G-----l~~p~~GsI~~~g~~~ 107 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG-----IGNEEEGAAKTGVVEV 107 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT-----CCTTSTTSCCCCC---
T ss_pred EEEEECCCCCcHHHHHHHHhC-----CCCccCceEEECCeec
Confidence 999999999999999999999 889999998 666655
No 71
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.68 E-value=1.3e-08 Score=84.78 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=24.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-|++|++++|+||||||||||+++|++.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4788999999999999999999999994
No 72
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.68 E-value=1.5e-08 Score=100.40 Aligned_cols=28 Identities=36% Similarity=0.491 Sum_probs=25.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
....+|++++|+||||||||||+++|++
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999999995
No 73
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.66 E-value=1.5e-08 Score=81.94 Aligned_cols=30 Identities=43% Similarity=0.702 Sum_probs=25.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..|.+|++++|+||||||||||+++|++.+
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 346789999999999999999999999953
No 74
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.66 E-value=1.2e-08 Score=84.72 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=31.2
Q ss_pred CccccCCCCCEEEEEcCCchhHHHHHHHHH-hcCCCeEEcCCCCceecCeecccCCCChhhhcCC
Q 048453 6 SKQRALNKPNLVIIMGPTGSGKSKLAVDLA-SHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGV 69 (236)
Q Consensus 6 ~~~~~~~~g~ii~IiGpsGsGKSTL~~~La-~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~ 69 (236)
+.++..++|++++|+||||||||||+++|+ +.++ + ++.+.++.+..+...+..+.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~-----~----~~~~~~~~~~~~~~g~~~g~ 74 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN-----N----IVKSVSVTTRAARKGEKEGK 74 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC---------C----EEECCCEESSCCCTTCCBTT
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC-----C----cccccccCCCCCCccccCCC
Confidence 345667889999999999999999999999 8432 1 34455555555544444443
No 75
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.65 E-value=9.7e-09 Score=82.31 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=32.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
++..++|++++|+||||||||||++.|++. ++.|.| +++.++
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~-------~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANL-------PGVPKVHFHSDDL 45 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTC-------SSSCEEEECTTHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhc-------cCCCeEEEcccch
Confidence 567889999999999999999999999993 455655 565554
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.61 E-value=2.4e-08 Score=81.68 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=24.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..++|++++|+||||||||||+++|++.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56889999999999999999999999954
No 77
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.60 E-value=8.7e-09 Score=82.59 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+|++++|+||||||||||++.|++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999999954
No 78
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.57 E-value=8e-09 Score=85.34 Aligned_cols=35 Identities=37% Similarity=0.501 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
.++|++++|+||||||||||+++|++ + .+++|+|.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~G-----l-~p~~G~I~ 53 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAV-----Q-ALQSKQVS 53 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHH-----H-HHHTTSCS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhc-----C-CCcCCeee
Confidence 35799999999999999999999999 8 99999983
No 79
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.55 E-value=3e-08 Score=80.58 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=27.0
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEE
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEII 43 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii 43 (236)
+|..++|++++|+||||||||||+++|++.++..++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 456678999999999999999999999996654443
No 80
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.55 E-value=1.3e-07 Score=84.95 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
...+| +++|+||||||||||+++|+..++
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 45778 999999999999999999977654
No 81
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.55 E-value=8.5e-09 Score=98.84 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.4
Q ss_pred HHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 188 LKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 188 L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
|.-+|++++. +||.+..++.+.|.-+...|.++
T Consensus 567 llllDEPt~~-LD~~~~~~i~~~l~~l~~~g~tv 599 (670)
T 3ux8_A 567 LYILDEPTTG-LHVDDIARLLDVLHRLVDNGDTV 599 (670)
T ss_dssp EEEEESTTTT-CCHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 6788999998 99999999999998887767653
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.54 E-value=2.7e-08 Score=86.69 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=39.2
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.....+|++++|+||||||||||++.|++ ++.+++|.| +.|.|+
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag-----~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAH-----RLKNEGTKVLMAAGDT 138 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHH-----HHHHTTCCEEEECCCC
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHcCCeEEEEeecc
Confidence 44567899999999999999999999999 788899998 788887
No 83
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.52 E-value=1.5e-08 Score=86.40 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=36.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC-CCce-ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD-SMQV-YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d-sg~i-~~g~dI 56 (236)
.++|++++|+||||||||||+++|++ ++.++ +|.| +.|.++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g-----~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID-----YINQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH-----HHHHHCCCEEEEEESSC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH-----hCCCCCCCEEEEcCCcc
Confidence 67899999999999999999999999 77777 8888 677666
No 84
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.51 E-value=3.8e-08 Score=90.91 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=39.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
...++ ++++|+||||||||||+++|++ ++.+++|.| ++|.++..
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~G-----l~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVT-----ALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHH-----HHCCCTTTCCCCCTTSCS
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhc-----CCCCCCCEEEECCEEccc
Confidence 34567 9999999999999999999999 889999999 88888753
No 85
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.51 E-value=4.1e-08 Score=85.60 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
+|++++|+||||||||||++.|++ ++.+++|.| +.|.|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag-----ll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR-----YYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH-----HHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH-----HHHhcCCEEEEEeecCC
Confidence 689999999999999999999999 888999999 7888874
No 86
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.51 E-value=2.6e-08 Score=81.19 Aligned_cols=38 Identities=34% Similarity=0.479 Sum_probs=29.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCC--CeEEcCCC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFP--IEIINADS 47 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~--~~ii~~ds 47 (236)
..++|++++|+||||||||||++.|++.++ ..+++.|.
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 456889999999999999999999999765 44444443
No 87
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=3e-08 Score=80.51 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=31.4
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
++.+.++++++|+||+||||||+++.|++.++..+++.|.
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 4456788999999999999999999999988887776554
No 88
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.48 E-value=4.7e-08 Score=77.00 Aligned_cols=34 Identities=26% Similarity=0.592 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
..+.+++|+||+|||||||++.|++.++..++..
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 3467899999999999999999999888766543
No 89
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.47 E-value=3.9e-08 Score=80.09 Aligned_cols=28 Identities=36% Similarity=0.646 Sum_probs=22.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
|++|++++|+||||||||||++.|++.+
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999999954
No 90
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.45 E-value=6.3e-08 Score=86.33 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=39.6
Q ss_pred ccccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 7 KQRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 7 ~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.....++|++++|+||||||||||++.|++ ++.+++|.| +.|.|+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag-----~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH-----RLKNEGTKVLMAAGDT 195 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHH-----HHHHTTCCEEEECCCC
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHh-----hccccCCEEEEecccc
Confidence 344567899999999999999999999999 788899998 788887
No 91
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.41 E-value=5e-08 Score=79.82 Aligned_cols=41 Identities=34% Similarity=0.480 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC---CCCce-ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA---DSMQV-YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~---dsg~i-~~g~dI 56 (236)
.++|++++|+||||||||||+++|++ ++.+ +.+.| .+|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~-----~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA-----ALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH-----HHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH-----HHhhcCCceEEEecCCCcC
Confidence 46799999999999999999999999 5543 34555 455444
No 92
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.41 E-value=9.1e-08 Score=76.89 Aligned_cols=25 Identities=36% Similarity=0.707 Sum_probs=22.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
|++++|+||||||||||+++|++.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999943
No 93
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.39 E-value=7.9e-08 Score=84.70 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=38.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeecc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~ 57 (236)
.++|++++|+|||||||||+++.|++ ++.+++|.| +.|.|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag-----~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLAN-----WLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHH-----HHHHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH-----HHHhcCCEEEEEeeccc
Confidence 46799999999999999999999999 888999999 7888873
No 94
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.38 E-value=7.8e-08 Score=82.40 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=23.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.++|+||||||||||+++|++ +..+++|.+ +.|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g-----~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK-----SQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH-----HHC------------C
T ss_pred EEEEECCCCCCHHHHHHHHhC-----CCCCCCCccccCCccc
Confidence 589999999999999999999 888899998 788776
No 95
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.37 E-value=1.7e-07 Score=74.10 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.+|++++|+||+||||||+++.|++.++..+++.|
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 45889999999999999999999997665554433
No 96
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.34 E-value=9.5e-08 Score=77.67 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
|++++|+||||||||||++.|++ .+. ++| + ++|.++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g-----~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASE-----VLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHH-----HHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHh-----hcc-cCC-EEEcCEec
Confidence 67899999999999999999999 666 777 6 666665
No 97
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.33 E-value=1.6e-07 Score=81.67 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc--CCCCce-e---cCee
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN--ADSMQV-Y---QGLD 55 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~--~dsg~i-~---~g~d 55 (236)
..+|++++|+||||||||||+++|++ ++. +++|.| + +|..
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~-----~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQA-----LLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH-----HHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-----HHhhCCCCCeEEEEecCCcc
Confidence 36789999999999999999999999 666 778877 5 5544
No 98
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.33 E-value=1.1e-07 Score=83.73 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCee
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~d 55 (236)
.++|++++|+||||||||||+++|++ ++++++|.| +.|.+
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g-----~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIME-----FIPKEERIISIEDTE 208 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGG-----GSCTTSCEEEEESSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhC-----CCcCCCcEEEECCee
Confidence 45789999999999999999999999 888899988 66643
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.32 E-value=2e-07 Score=86.18 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=38.3
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+....+|++++|+||||||||||+++|++ ++.+++|.| +.+.|+
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAg-----ll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLAR-----QFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHH-----HHHHTTCCEEEECCCT
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHH-----HhhhcCCeEEEecCcc
Confidence 34567899999999999999999999999 788889998 667776
No 100
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.31 E-value=2.1e-07 Score=75.19 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=25.2
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
|...+|++++|+|||||||||+++.|++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 445679999999999999999999999954
No 101
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.31 E-value=1.4e-07 Score=79.78 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
.+|.+++|+||+||||||+++.|+++++.. .+|+|.+|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~--~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR--LLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE--EEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC--cCCCCcee
Confidence 568999999999999999999999766654 45777776
No 102
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.31 E-value=2.3e-07 Score=80.51 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-e---cCeeccc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-Y---QGLDVLT 58 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~---~g~dI~t 58 (236)
..|++++|+||||||||||+++|++ +..+++|.| + +|.++.+
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g-----~~~~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP-----GLKLRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST-----TCCCC-------------CCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc-----cccccccceecccCCCCCcee
Confidence 3589999999999999999999999 888999998 6 7888743
No 103
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.31 E-value=2.1e-07 Score=82.84 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=34.5
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQG 53 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g 53 (236)
..++|++++|+||||||||||+++|++ ++++++|.| +.|
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~-----~~~~~~g~I~ie~ 210 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQ-----EIPFDQRLITIED 210 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHT-----TSCTTSCEEEEES
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHh-----cCCCCceEEEECC
Confidence 346899999999999999999999999 788889988 554
No 104
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.2e-07 Score=87.24 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC-c-e-ecC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM-Q-V-YQG 53 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg-~-i-~~g 53 (236)
..++|++++|+||||||||||+++|++ ++.+++| + | ++|
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~G-----l~~p~~G~~pI~vdg 175 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCS-----YALKFNAYQPLYINL 175 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHH-----TTHHHHCCCCEEEEC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhC-----cccccCCceeEEEcC
Confidence 356899999999999999999999999 7788888 7 7 555
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.28 E-value=2.1e-07 Score=74.12 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
+..++|+|++||||||+++.|+..++.++++.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 56899999999999999999999988888776653
No 106
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.27 E-value=2.6e-07 Score=80.75 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
.++|++++|+||||||||||+++|++ ++.++.|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g-----ll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA-----LLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH-----HHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh-----hccccCC
Confidence 57899999999999999999999999 6655544
No 107
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.27 E-value=3.3e-07 Score=73.46 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.9
Q ss_pred CccccCCCCCEEEEEcCCchhHHHHHHHHHhc-CCCeEEcCCC
Q 048453 6 SKQRALNKPNLVIIMGPTGSGKSKLAVDLASH-FPIEIINADS 47 (236)
Q Consensus 6 ~~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~-l~~~ii~~ds 47 (236)
+..|.+.++.+++|+|++||||||+++.|+.. ++..+++.|.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~ 44 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGK 44 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHH
Confidence 34566777899999999999999999999998 6777776553
No 108
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.27 E-value=5.8e-08 Score=81.30 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=29.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
++++|+||||||||||+++|++ ++.+++|.| ++|.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g-----~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVT-----ALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHH-----HHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhc-----ccccCCCeEEECCEEc
Confidence 5678999999999999999999 888999999 788887
No 109
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.26 E-value=3.4e-07 Score=79.86 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=26.8
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...++|++++|+||||||||||+++|++.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 45789999999999999999999999994
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.25 E-value=4.1e-08 Score=96.17 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=29.1
Q ss_pred HHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 187 LLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 187 ~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
.|.-+|++++. +|+.+..++.+.|..+...|.++
T Consensus 753 ~lLILDEPTsG-LD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 753 TVYVLDEPTTG-LHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp EEEEEECTTTT-CCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHHHHhCCCEE
Confidence 57789999988 99999999999998887777753
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.25 E-value=2.9e-07 Score=76.38 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=24.3
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHH
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La 35 (236)
..++|++++|+||||||||||+++|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35789999999999999999999999
No 112
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.25 E-value=2.2e-07 Score=74.32 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=28.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC---CCce-ecCeec
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINAD---SMQV-YQGLDV 56 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d---sg~i-~~g~dI 56 (236)
++++|+|+||||||||++.|++ ++.++ .|.| ++|.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~-----~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP-----ILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH-----HHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHH-----HhhhcCCceEEEEEcCccc
Confidence 5899999999999999999999 77777 7888 677775
No 113
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.24 E-value=3.6e-07 Score=75.01 Aligned_cols=36 Identities=31% Similarity=0.608 Sum_probs=30.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCcee
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVY 51 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~ 51 (236)
+.+++|+||+||||||+++.|++.++..++ |+|.++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 568999999999999999999998887665 455554
No 114
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=4e-07 Score=79.45 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=26.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-e---cCeeccc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-Y---QGLDVLT 58 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~---~g~dI~t 58 (236)
....+|++++|+||||||||||+++|++ ...+++|.| + +|..+++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g-----~~~~~~G~I~~~~~~G~~tt~ 216 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISP-----ELGLRTNEISEHLGRGKHTTR 216 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcc-----cccccccceeeecCCCccccc
Confidence 4556799999999999999999999999 778889988 4 7777643
No 115
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.24 E-value=2.6e-07 Score=91.71 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=35.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQ 52 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~ 52 (236)
....+|++++|+||||||||||+++|+| ++.+++|.| +.
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaG-----ll~P~sG~I~~~ 733 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTG-----ELLPTSGEVYTH 733 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTT-----SSCCSEEEEEEC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCCCCceEEEEc
Confidence 3467899999999999999999999999 888999998 44
No 116
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.24 E-value=3e-07 Score=83.55 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.+|.+++|+||||||||||+++|++ .+++++|.| +.|.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg-----~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ-----ELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH-----HHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh-----hcCCCCCEEEEecccc
Confidence 5788999999999999999999999 778888888 566555
No 117
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.23 E-value=3e-07 Score=83.98 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=36.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL 54 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~ 54 (236)
....+|++++|+||||||||||+++|++ +..+++|.| +.|.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag-----~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMAR-----YTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHH-----HSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhc-----ccCCCeEEEEEece
Confidence 4567899999999999999999999999 778899988 6776
No 118
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.23 E-value=3e-07 Score=81.59 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=35.7
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCee
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~d 55 (236)
....+|++++|+||||||||||+++|++ ...+|.|.+ +.|.+
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g-----~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICN-----GASADIIVLALIGER 108 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH-----HSCCSEEEEEEESCC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhc-----CCCCCEEEEEEeccc
Confidence 3467899999999999999999999999 777888877 55654
No 119
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.22 E-value=4.2e-07 Score=76.18 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=26.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+...++|.+++|+||||||||||+++|++.++
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999999999665
No 120
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.21 E-value=2.7e-07 Score=74.94 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=37.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeecccCCCChhhhcCCceeecc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDVLTNKVSLQDQKGVPHHLLG 75 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI~t~~~~~~e~~~~~~~li~ 75 (236)
.|+|+||||||||||++.|...++..+ ..-...+|.++.+.|..+..||++.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~--------~~svs~TTR~pR~gE~~G~dY~Fvs 54 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF--------GFSVSSTTRTPRAGEVNGKDYNFVS 54 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE--------EECCCEECSCCCTTCCBTTTBEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe--------EEEEEEeccCCCCCCcCCceeEeec
Confidence 489999999999999999987543222 1223345667777788888777664
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.20 E-value=3.8e-07 Score=74.68 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=25.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
..++|++++|+||||||||||++.|++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999999998
No 122
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.20 E-value=4.7e-07 Score=79.88 Aligned_cols=44 Identities=27% Similarity=0.284 Sum_probs=38.6
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeeccc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDVLT 58 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI~t 58 (236)
...+|++++|+||||||||||+++|++ .+.+++|.| +.+.++.+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g-----~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGS-----LLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHH-----HHHHTTCCEEEEEECGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHH-----hhhhCCCEEEEEEEcCcc
Confidence 457899999999999999999999999 778889988 77888753
No 123
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.19 E-value=7e-07 Score=72.54 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=33.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcC-CCeEEcCCCC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHF-PIEIINADSM 48 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l-~~~ii~~dsg 48 (236)
..+++.+++|+|++||||||+++.|++.+ +..+++.|..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 56 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence 35668899999999999999999999988 6777777653
No 124
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.17 E-value=4.5e-07 Score=72.12 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.+|.+++|+|++||||||+++.|+..++..+++.|
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 45778999999999999999999988877766543
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.16 E-value=3.9e-07 Score=76.27 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL 54 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~ 54 (236)
++++++|+||||||||||++.|+..++ +..+++|.+ +.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg--~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG--LQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC--CCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC--CeEecHHHHHHHHH
Confidence 468999999999999999999994443 455667776 4443
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.16 E-value=6.6e-07 Score=78.20 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC---CCeEEcCCCCce-ecCeecc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF---PIEIINADSMQV-YQGLDVL 57 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l---~~~ii~~dsg~i-~~g~dI~ 57 (236)
+-++++|+|++|||||||++.|++.. ...++.+|.|.| ++|.++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 34689999999999999999999864 234678999999 8888874
No 127
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.15 E-value=5.3e-07 Score=73.30 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=32.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
...++.+++|+|++|||||||++.|++ .+.+.++.+ +.+.|.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~-----~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQ-----TLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHH-----HHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHH-----HHhhcCCeEEEeccCc
Confidence 356789999999999999999999999 555556655 444444
No 128
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.15 E-value=1.1e-06 Score=68.71 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=28.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+++|+|++||||||+++.|++.++..+++.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 79999999999999999999988887776664
No 129
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.15 E-value=6.1e-07 Score=76.05 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
|++++|+|++||||||+++.|++.++..++..|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 8899999999999999999999988888776554
No 130
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.14 E-value=8.7e-07 Score=71.72 Aligned_cols=34 Identities=32% Similarity=0.589 Sum_probs=29.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
..+++|+|++||||||+++.|++.++..+++.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence 5689999999999999999999988777766554
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.14 E-value=6.7e-07 Score=71.54 Aligned_cols=24 Identities=46% Similarity=0.679 Sum_probs=22.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
|++++|+||||||||||++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 578999999999999999999973
No 132
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.12 E-value=4.9e-07 Score=80.83 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC-CCce-ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD-SMQV-YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d-sg~i-~~g~dI 56 (236)
.++|++++|+||||||||||+++|++ +++++ +|.| +.+.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~-----~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID-----YINQTKSYHIITIEDPI 175 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH-----HHHHHSCCEEEEEESSC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh-----hcCcCCCcEEEEecccH
Confidence 57899999999999999999999999 77776 7877 444333
No 133
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.12 E-value=1.1e-06 Score=71.12 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=25.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..+|++++|+||||||||||++.|++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999994
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.11 E-value=1.1e-06 Score=69.82 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=31.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+.+.++.+++|+|++||||||+++.|+..++..+++.|
T Consensus 6 ~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 6 PEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 34456788999999999999999999998887776554
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.09 E-value=9.4e-07 Score=70.46 Aligned_cols=36 Identities=28% Similarity=0.625 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
|.++.+++|+|++||||||+++.|+..++..+++.|
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 446779999999999999999999998777666544
No 136
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.09 E-value=6.3e-07 Score=79.59 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=30.4
Q ss_pred CCC--CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC----Ccee
Q 048453 11 LNK--PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS----MQVY 51 (236)
Q Consensus 11 ~~~--g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds----g~i~ 51 (236)
..+ ++.++|+||||||||||+++|++ ++.+++ |.++
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~g-----l~~~~~~~e~G~i~ 206 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAA-----VFNTTSAWEYGREF 206 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHH-----HTTCEEECCTTHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHH-----HhCCCcchhhHHHH
Confidence 455 88999999999999999999999 666666 6663
No 137
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.08 E-value=1.4e-06 Score=70.65 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.+++|+||+||||||+++.|++ ++..+++.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHH
Confidence 3799999999999999999998 7877776544
No 138
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.06 E-value=1.5e-06 Score=82.37 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=27.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC-CCCce-ecCeec
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA-DSMQV-YQGLDV 56 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~-dsg~i-~~g~dI 56 (236)
.++|+||||||||||+++|+| +..| ++|.| ++|.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G-----l~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG-----VALPRGSGIVTRCPLVL 84 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS-----CC-------CCCSCEEE
T ss_pred eEEEECCCCChHHHHHHHHhC-----CCCCCCCCeEEEcCEEE
Confidence 499999999999999999999 7666 89999 789886
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.05 E-value=1.5e-06 Score=80.83 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCe
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGL 54 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~ 54 (236)
.++|+.++|+||||||||||+++|++ +++++.|.| +.|.
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~-----~i~~~~giitied~ 296 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMM-----FIPPDAKVVSIEDT 296 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGG-----GSCTTCCEEEEESS
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHh-----hCCCCCCEEEEcCc
Confidence 46788999999999999999999999 778888877 5543
No 140
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.05 E-value=6.5e-07 Score=88.43 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=25.4
Q ss_pred HHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 188 LKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 188 L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
|.-+|++++. +|+.+.++|.+.|.-+...|.+
T Consensus 829 LLILDEPTsG-LD~~~~~~L~~lL~~L~~~G~T 860 (916)
T 3pih_A 829 LYILDEPTVG-LHFEDVRKLVEVLHRLVDRGNT 860 (916)
T ss_dssp EEEEESTTTT-CCHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCC-CCHHHHHHHHHHHHHHHhcCCE
Confidence 6677888887 8888888888888877666765
No 141
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.04 E-value=1.8e-06 Score=69.22 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.++|+||||||||||+++|++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999543
No 142
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.04 E-value=1.3e-06 Score=69.80 Aligned_cols=37 Identities=22% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
|.++.+++|+|++||||||+++.|+..++..+++.|.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~ 42 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD 42 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHH
Confidence 3467899999999999999999999988887776543
No 143
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.03 E-value=9.7e-07 Score=78.55 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC-CCcee
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD-SMQVY 51 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d-sg~i~ 51 (236)
..++.+++|+||||||||||+++|++ .++++ ++.|+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g-----~~~~~~~~~i~ 156 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLD-----YLNNTKYHHIL 156 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHH-----HHHHHCCCEEE
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHh-----cccCCCCcEEE
Confidence 35677999999999999999999999 66665 45553
No 144
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.03 E-value=1.8e-06 Score=69.78 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=27.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+++|+|++||||||+++.|++ ++..++..|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 699999999999999999999 8888776654
No 145
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.02 E-value=1.5e-06 Score=72.14 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=25.3
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|.+++|.|++|||||||++.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3577999999999999999999999983
No 146
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.02 E-value=1.3e-06 Score=81.39 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=34.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHH--HHhcCCCeEEcCCCCce-ecCee
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVD--LASHFPIEIINADSMQV-YQGLD 55 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~--La~~l~~~ii~~dsg~i-~~g~d 55 (236)
..++|++++|+||||||||||+++ +++ ++.+++|.| +.|.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~G-----l~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNG-----IIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH-----HHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHH-----HHhCCCCEEEEEEeC
Confidence 457899999999999999999999 678 777788888 56654
No 147
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.02 E-value=1.5e-06 Score=74.65 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=33.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC-ce-ecCe
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM-QV-YQGL 54 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg-~i-~~g~ 54 (236)
..++|++++|+||||||||||++.|++ .+.+++| .| |.+.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~-----~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQAL-----QWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHH-----HHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH-----HHHHHcCCeEEEEeC
Confidence 478899999999999999999999999 6677756 55 5443
No 148
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.01 E-value=2.5e-06 Score=69.28 Aligned_cols=29 Identities=31% Similarity=0.666 Sum_probs=26.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
|.+|.+++|+||+|||||||++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56789999999999999999999998654
No 149
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.01 E-value=3.5e-06 Score=66.37 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEE
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEII 43 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii 43 (236)
+.+++|+|++||||||+++.|+..++..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 468999999999999999999998775443
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.00 E-value=1.6e-06 Score=68.57 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=28.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.++|+|++||||||+++.|++.++..+++.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~ 37 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDF 37 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccH
Confidence 69999999999999999999998888776543
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.00 E-value=1.1e-06 Score=71.64 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|++++|+||||||||||++.|++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999999997
No 152
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.00 E-value=2.3e-06 Score=70.60 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=29.4
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
++.++.+++|+|++||||||+++.|+..++..+++.|
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHH
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEech
Confidence 3455678999999999999999999998888777654
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.00 E-value=1e-05 Score=62.89 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
+|+.++|+||+|||||||+++|++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999993
No 154
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.98 E-value=2.9e-06 Score=75.51 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc-CCCCce-ec-Ceec
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN-ADSMQV-YQ-GLDV 56 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~-~dsg~i-~~-g~dI 56 (236)
.+|++++|+||||||||||+++|++ ... +++|.| .. |...
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g-----~~~~~~~G~I~~~~G~g~ 255 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLG-----LQNEILTNDVSNVSGLGQ 255 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHC-----CSSCCCCC----------
T ss_pred cCCCEEEEECCCCccHHHHHHHHhc-----cccccccCCccccCCCCc
Confidence 3689999999999999999999999 666 888888 43 5443
No 155
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.98 E-value=2.9e-06 Score=69.44 Aligned_cols=33 Identities=39% Similarity=0.574 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.+.+++|+|++||||||+++.|++ ++..+++.|
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 456899999999999999999998 787777654
No 156
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.98 E-value=2.4e-06 Score=67.81 Aligned_cols=33 Identities=30% Similarity=0.583 Sum_probs=28.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+.+++|+|++||||||+++.|+..++..+++.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 458999999999999999999998887777654
No 157
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.95 E-value=2.3e-06 Score=68.00 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=29.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 469999999999999999999988888876654
No 158
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.94 E-value=5.6e-06 Score=71.80 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=30.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-e---cCeeccc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-Y---QGLDVLT 58 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~---~g~dI~t 58 (236)
...|++++|+||||||||||+++|+ .+ .+++|.| + +|.++++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~-----~~~~G~i~~~~~~G~~~t~ 207 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE-----ELRTQEVSEKTERGRHTTT 207 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC-----CCCCSCC---------CCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh-----hCcccccccccCCCCCcee
Confidence 3468999999999999999999998 53 4578888 6 7877743
No 159
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.93 E-value=1.2e-06 Score=70.17 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+..+.+++|+|++||||||+++.|+..++..+++.|.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 45 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGE 45 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHH
Confidence 3456799999999999999999999988877776543
No 160
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.93 E-value=2.9e-06 Score=67.42 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=29.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+.+++|+|++||||||+++.|+..++..+++.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~ 36 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGE 36 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence 5689999999999999999999988887776543
No 161
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.93 E-value=4e-06 Score=66.44 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+| +++|+||||||||||+.+|+..+
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 3445 99999999999999999999844
No 162
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=3.6e-06 Score=66.67 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+|.+++|+|++||||||+++.|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999954
No 163
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.90 E-value=5.5e-06 Score=66.82 Aligned_cols=36 Identities=17% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
....+|+|+|++||||||+++.|+..++..+++.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~ 48 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGD 48 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHH
Confidence 345689999999999999999999988888776653
No 164
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.89 E-value=4.6e-06 Score=69.28 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
..++.+++|+|++||||||+++.|++.++..+++.|
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 356789999999999999999999998887776544
No 165
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.89 E-value=3.3e-06 Score=79.21 Aligned_cols=41 Identities=32% Similarity=0.255 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC-ce--ecCeec
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM-QV--YQGLDV 56 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg-~i--~~g~dI 56 (236)
..+|++++|+|+||||||||+++|++ .+.+++| .+ ++|.++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~-----~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA-----RLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH-----HHHTTCSSCEEEESSHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH-----hhcccCCceEEEECCcHH
Confidence 45799999999999999999999999 6666775 44 566554
No 166
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.88 E-value=4.9e-06 Score=66.78 Aligned_cols=33 Identities=36% Similarity=0.512 Sum_probs=28.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
..+++|+|++||||||+++.|++. +..+++.|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccH
Confidence 468999999999999999999997 777776554
No 167
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.88 E-value=4.9e-06 Score=64.58 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=26.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
.+++|+||+||||||+++.| ..++..+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 37999999999999999999 8788777654
No 168
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=5e-06 Score=65.92 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
..+|+.++|+||+|||||||+++|++
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999999998
No 169
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.87 E-value=4.5e-06 Score=65.39 Aligned_cols=33 Identities=33% Similarity=0.618 Sum_probs=29.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.+++|+|+.||||||+++.|+..++.+++..|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~ 40 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDM 40 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 589999999999999999999988888776554
No 170
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.87 E-value=8.2e-06 Score=65.58 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+|.+++|+|++||||||+++.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999976
No 171
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.87 E-value=4.9e-06 Score=67.01 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+++|+|++||||||+++.|++.++..+++.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~ 35 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGL 35 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccch
Confidence 89999999999999999999998888876654
No 172
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.87 E-value=5.9e-06 Score=71.16 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC--CCeEEcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF--PIEIINAD 46 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l--~~~ii~~d 46 (236)
...+.+++|+||+||||||+++.|+..+ +...++.|
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D 67 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence 3457899999999999999999999876 44455443
No 173
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.87 E-value=5.2e-06 Score=68.03 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+++.+++|+|++||||||+++.|+..++..+++.|
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 36 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATG 36 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehh
Confidence 35678999999999999999999998888777654
No 174
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.87 E-value=4.9e-06 Score=65.36 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=26.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHh-cCCCeEEcCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS-HFPIEIINAD 46 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~-~l~~~ii~~d 46 (236)
.+++|+|++||||||+++.|+. .++..+++.|
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d 35 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH
Confidence 4799999999999999999998 6676666543
No 175
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.86 E-value=3.9e-06 Score=66.57 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=24.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+.+++|+|++||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999766
No 176
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.86 E-value=4.8e-06 Score=67.67 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=31.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
..+++|+|++||||||+++.|+..++.++++.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence 35799999999999999999999889988887764
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.86 E-value=4.6e-06 Score=65.32 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=28.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.+++|+|++||||||+++.|+..++..+++.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~ 35 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDI 35 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccH
Confidence 369999999999999999999988887776553
No 178
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.85 E-value=5.3e-06 Score=69.55 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQG 53 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g 53 (236)
.+.+++|+||+||||||+++.|++.++..+++ .+.+|++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d--~g~~~r~ 46 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD--TGAMYRI 46 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc--CCcHHHH
Confidence 45689999999999999999999988877664 4444533
No 179
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.84 E-value=5.4e-06 Score=72.75 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+++|+||||||||||+++|++.+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999943
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.84 E-value=7.4e-06 Score=71.35 Aligned_cols=42 Identities=21% Similarity=0.413 Sum_probs=34.3
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
...++++++|+||+||||||++..||+ .+.++++.| +.+.|+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~-----~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAK-----MFVDEGKSVVLAAADT 142 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHH-----HHHHTTCCEEEEEECT
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHH-----HHHhcCCEEEEEcccc
Confidence 346789999999999999999999999 666677776 555554
No 181
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.84 E-value=6.7e-06 Score=66.32 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
...+.+|+|+|++||||||+++.|+..++..+++.|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 345568999999999999999999998887776554
No 182
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.83 E-value=8.1e-06 Score=66.06 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.6
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.|.|.+|.+|+|+|++||||||+++.|+..++
T Consensus 3 ~m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 3 HMAARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp ----CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35677889999999999999999999998543
No 183
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.83 E-value=7.3e-06 Score=68.81 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCe
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIE 41 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ 41 (236)
....+|+|+|++||||||+++.|+..++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 344689999999999999999999988876
No 184
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.81 E-value=1e-05 Score=68.03 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=26.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
....+.+++|+|++||||||+++.|++.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345578999999999999999999999775
No 185
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.80 E-value=9e-06 Score=69.48 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI 42 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i 42 (236)
.++| ++|+||+|||||||+++|++.++...
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 3445 99999999999999999999765543
No 186
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.80 E-value=1.1e-05 Score=66.94 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=31.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
.+++.++++|+||+||||+|.++.|+..++...++
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 45677899999999999999999999999887764
No 187
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=7.1e-06 Score=74.57 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.7
Q ss_pred ccCCCCCE--EEEEcCCchhHHHHHHHHHhc
Q 048453 9 RALNKPNL--VIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 9 ~~~~~g~i--i~IiGpsGsGKSTL~~~La~~ 37 (236)
...++|++ ++|+||||||||||+++|++.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45788999 999999999999999999995
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.79 E-value=4.4e-06 Score=67.32 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=26.1
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
....+|..++|+|++|||||||++.|++......++++.|.+
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~ 62 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence 456788999999999999999999999843222335666654
No 189
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.79 E-value=1e-05 Score=63.83 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEE
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEII 43 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii 43 (236)
++.+++|+|++||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999998887665
No 190
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.78 E-value=6.1e-06 Score=67.71 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
.+.+++|+||+||||||+++.|+..++...++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345799999999999999999999888766544
No 191
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.78 E-value=8.9e-06 Score=66.29 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=27.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.++|+||+||||||+++.|+..++..+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4899999999999999999998888777654
No 192
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.77 E-value=8.5e-06 Score=68.26 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+.++.+++|+||+||||||+++.|+..++..+++.+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 456778999999999999999999998887777553
No 193
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.77 E-value=7.9e-06 Score=63.71 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=27.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+++|+|++||||||+++.|+..++..+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 33 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE 33 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence 58999999999999999999988877765543
No 194
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.77 E-value=7.9e-06 Score=66.51 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.++|+||+||||||+++.|+..++..+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4899999999999999999998887777554
No 195
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.73 E-value=9e-06 Score=65.05 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
-.++|+|++|||||||++.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999854
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.73 E-value=4.8e-06 Score=67.37 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+.+|.+++|+|++||||||+++.|+..++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999998654
No 197
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.72 E-value=1.7e-05 Score=70.98 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=28.4
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI 42 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i 42 (236)
..++|++++|+||+|||||||+++|++.+++.+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 567899999999999999999999999654443
No 198
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.70 E-value=1.9e-05 Score=63.95 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|++++|+||+|||||||++.|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999999987
No 199
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.70 E-value=1.7e-05 Score=63.46 Aligned_cols=28 Identities=29% Similarity=0.618 Sum_probs=24.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEE
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEII 43 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii 43 (236)
+++|+|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 6899999999999999999998776544
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=1.8e-05 Score=65.18 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=24.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|++++|+||||||||||++.|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999999999999983
No 201
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.67 E-value=2.7e-05 Score=70.45 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
...+.+++|+|++||||||+++.|+..++..+++.|.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~ 291 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 291 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccch
Confidence 4457899999999999999999999987777665554
No 202
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.67 E-value=7e-06 Score=70.84 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC-----CeEEcCCCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP-----IEIINADSM 48 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~-----~~ii~~dsg 48 (236)
++.+|+|.||+||||||+++.|+..++ ..+++.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 456899999999999999999998766 566666654
No 203
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.66 E-value=1e-05 Score=66.02 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
...+|.+++|+|++||||||+++.|++.+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999999944
No 204
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.66 E-value=1.4e-05 Score=69.23 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC-ce-ecCeec
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM-QV-YQGLDV 56 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg-~i-~~g~dI 56 (236)
.+|++++|+|||||||||++..||+ .+.++.| .| +-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~-----~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAA-----ISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHH-----HHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH-----HHHHhcCCEEEEEecCc
Confidence 4689999999999999999999998 5555455 44 444443
No 205
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.65 E-value=1.5e-05 Score=65.36 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+..++|+|++||||||+++.|+..++..+++.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~ 38 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGD 38 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhH
Confidence 4579999999999999999999988888776543
No 206
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.65 E-value=2.2e-05 Score=67.77 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
..++.+++|+||+|||||||++.|++.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45678999999999999999999998553
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.65 E-value=1.2e-05 Score=70.37 Aligned_cols=42 Identities=33% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
...++|+||+|||||||+++|++.++..+. +.+|.+ ..+.++
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~-~~sg~~~~~~~~l 93 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIH-VTSGPVLVKQGDM 93 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEE-EEETTTCCSHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEE-EEechHhcCHHHH
Confidence 367999999999999999999997765443 345554 344443
No 208
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.64 E-value=2.2e-05 Score=66.27 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc---CCCeEE
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH---FPIEII 43 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~---l~~~ii 43 (236)
.++.+|+|+|++||||||+++.|+.. .+..++
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 34668999999999999999999986 454443
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.64 E-value=1.9e-05 Score=62.70 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=25.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC---CCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF---PIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l---~~~ii~~ 45 (236)
+++|+|++||||||+++.|+..+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 68999999999999999999976 6665544
No 210
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.63 E-value=2.8e-05 Score=64.90 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=21.4
Q ss_pred EEEEcCCchhHHHHHHHHHhcCC
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~ 39 (236)
++|+||||||||||+++|++.++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999654
No 211
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.62 E-value=2.2e-05 Score=65.02 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.+..++|+|++||||||+++.|+..++..+++.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 3468999999999999999999998888777654
No 212
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.61 E-value=2.2e-05 Score=68.77 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=35.4
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
....++++++|+|++||||||++..||+ .+...++.| +.+.|+
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~-----~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMAN-----YYAELGYKVLIAAADT 143 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHH-----HHHHTTCCEEEEECCC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH-----HHHHCCCeEEEEeCCC
Confidence 3456789999999999999999999999 666777777 556665
No 213
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.60 E-value=2.5e-05 Score=62.84 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPI 40 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~ 40 (236)
+|.+++|.|++||||||+++.|+..++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3678999999999999999999996654
No 214
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.58 E-value=4.9e-05 Score=60.86 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.++|+|++|||||||++.|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 215
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.57 E-value=2.7e-05 Score=63.41 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=29.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
+.+++|+|++||||||+++.|+..++..+++.|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~ 36 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGA 36 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCCh
Confidence 3579999999999999999999999988776554
No 216
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.57 E-value=2.2e-05 Score=67.21 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
..+|+|+|++||||||+++.|+ .++..+++.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~ 107 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDH 107 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhH
Confidence 4689999999999999999999 57888777654
No 217
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.57 E-value=1.3e-05 Score=63.39 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=22.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+++|+|++||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999665
No 218
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.56 E-value=3.5e-05 Score=63.21 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=26.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
+++|+||+||||+|.++.|+..++...++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 578999999999999999999999877653
No 219
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.55 E-value=4.3e-05 Score=64.86 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=21.3
Q ss_pred EEEEcCCchhHHHHHHHHHhcCC
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~ 39 (236)
++|+||||||||||+++|++.++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999999654
No 220
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.55 E-value=2.3e-05 Score=67.69 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
++++++|+|++||||||++..||+ .+...++.| +.+.|+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~-----~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL-----YYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH-----HHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-----HHHHcCCeEEEecCCc
Confidence 688999999999999999999999 666677777 556565
No 221
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.55 E-value=2.4e-05 Score=67.69 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=19.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeE-EcCCCCce-ecCeec
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEI-INADSMQV-YQGLDV 56 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~i-i~~dsg~i-~~g~dI 56 (236)
-++|+||||||||||++.|++ . +.+++| + +.|.++
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g-----~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL-----TDLYPERV-ISGAAEKI 56 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC----------------------
T ss_pred EEEEECCCCCCHHHHHHHHhC-----CCccCCCC-cccCCccc
Confidence 469999999999999999988 4 556666 4 455554
No 222
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.55 E-value=2.4e-05 Score=63.82 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=27.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
.++|+|++||||||+++.|+..++..+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d 32 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTG 32 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHH
Confidence 4799999999999999999998887776653
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.54 E-value=3.2e-05 Score=65.78 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=24.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|++++|+||||||||||++.+++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999999997
No 224
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.54 E-value=3.9e-05 Score=61.09 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC---CCeEE
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF---PIEII 43 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l---~~~ii 43 (236)
+++|.|++||||||+++.|+..+ +..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 68999999999999999999976 55544
No 225
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.53 E-value=2.7e-05 Score=64.12 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=26.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
+++|+|++||||||+++.|+..++..+++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESG 32 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchH
Confidence 5899999999999999999998887766543
No 226
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=2.1e-05 Score=69.52 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|+++.|+||||||||||++.|++.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999983
No 227
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.52 E-value=4.7e-05 Score=60.53 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=24.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+|.+++|+|++||||||+++.|++.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999999843
No 228
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.50 E-value=3.9e-05 Score=63.75 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=26.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+.+|.+++|.||+||||||+++.|++.+
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999954
No 229
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.48 E-value=7.8e-05 Score=67.06 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=33.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcC-------CCeEEcCCCCce-ecC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHF-------PIEIINADSMQV-YQG 53 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l-------~~~ii~~dsg~i-~~g 53 (236)
...+|..++|+|+||+|||||+++|++.- +...+.++.|.+ +.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 45778999999999999999999999832 223556777766 444
No 230
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.46 E-value=3.5e-05 Score=74.90 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=26.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEE-cCCCCce
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEII-NADSMQV 50 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii-~~dsg~i 50 (236)
|++++|+||||||||||+++|++ ++ .++.|.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag-----l~~~~~~G~~ 608 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL-----IALLAQVGSF 608 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH-----HHHHHTTTCC
T ss_pred CcEEEEECCCCCChHHHHHHHHh-----hhhhcccCce
Confidence 89999999999999999999998 54 2455543
No 231
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.45 E-value=6.5e-05 Score=74.28 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
....+|++++|+||||||||||+++++.
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 3456799999999999999999999975
No 232
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=7.4e-05 Score=62.42 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=25.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
.-+.|+||+|||||||+++|++.++..++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4489999999999999999999776555433
No 233
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.45 E-value=5.4e-05 Score=73.90 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
++|++++|+||||||||||+++|++
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999999998
No 234
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.44 E-value=3.8e-05 Score=67.91 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
..+.+++|+|++|||||||++.|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999999998
No 235
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.43 E-value=9.9e-05 Score=63.53 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
...+..+.|.||+|||||+|+++|++.++..++..+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 4567889999999999999999999988877665443
No 236
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.39 E-value=5.3e-05 Score=64.78 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=26.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcC-CCeEEcCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHF-PIEIINAD 46 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l-~~~ii~~d 46 (236)
.+++|+|++||||||+++.|+..+ +..+++.|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 579999999999999999999864 66666554
No 237
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.39 E-value=6.2e-05 Score=68.07 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
...+++++|+||||||||||+.+|+..++
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 34589999999999999999999998554
No 238
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.38 E-value=7.8e-05 Score=57.81 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
..+.+|+||||||||||+.+|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 239
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.34 E-value=0.00012 Score=59.62 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=28.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
..+|+|.|+.||||||+++.||.+++..++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 4589999999999999999999999999884
No 240
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.32 E-value=0.00013 Score=62.04 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
++..+.|.||+|+|||||++++++.++..++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 467899999999999999999999888766543
No 241
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.32 E-value=6.8e-05 Score=70.12 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCe
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIE 41 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ 41 (236)
+|+.++|+||||||||||+++|++.++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 68899999999999999999999965443
No 242
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.31 E-value=7e-05 Score=60.47 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+++|+|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998653
No 243
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=7.4e-05 Score=65.10 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=24.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
.+.|+||+|+||||++++|++. +..++.|.+ +.|.++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~----l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES----IFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH----HSCTTCCC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHH----HcCCCCCeEEecceee
Confidence 3899999999999999999994 334566666 555554
No 244
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00011 Score=60.38 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|++++|+||+|||||||+..++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999887765
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.26 E-value=0.00015 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.+++|+|++|||||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999999884
No 246
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.26 E-value=0.00011 Score=65.32 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=27.1
Q ss_pred HHHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 187 LLKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 187 ~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
.+.-+|++.+. +||.....+...|..+...|.++
T Consensus 305 ~~lllDEpt~~-LD~~~~~~~~~~l~~l~~~g~tv 338 (365)
T 3qf7_A 305 DAFFIDEGFSS-LDTENKEKIASVLKELERLNKVI 338 (365)
T ss_dssp CEEEEESCCTT-SCHHHHHHHHHHHHGGGGSSSEE
T ss_pred CEEEEeCCCcc-CCHHHHHHHHHHHHHHHhCCCEE
Confidence 45678999988 99999999998888776666653
No 247
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.26 E-value=9.5e-05 Score=68.67 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=25.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
...+|++++|+||||||||||++.+++
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999999999998
No 248
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.22 E-value=0.00025 Score=59.87 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
..+.-+.|.||+|+|||+|+++++..++..++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4567799999999999999999999888776543
No 249
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.22 E-value=0.00013 Score=72.36 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
...+|++++|+|||||||||+++.++.
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999999943
No 250
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.19 E-value=0.00012 Score=64.37 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=24.9
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...++.+++|+|++|+|||||++.|++.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999973
No 251
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.16 E-value=0.00019 Score=61.69 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
+....+.|.||+|+|||+|+++||..++..++..+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~ 70 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG 70 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHH
Confidence 3446788889999999999999999887766654433
No 252
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.16 E-value=0.00017 Score=56.49 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++..++|+|++|+|||||++.|++.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999974
No 253
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.16 E-value=0.0002 Score=59.45 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
....-+.|.||+|+|||+|+++++..++..++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 445668999999999999999999987766543
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.13 E-value=0.00013 Score=64.88 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|.++.|+||+|||||||+..++..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999873
No 255
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.13 E-value=0.00018 Score=63.86 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.5
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
....+| +++|+||||||||||+.+|..
T Consensus 22 ~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 22 LNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 345567 999999999999999999985
No 256
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.12 E-value=0.00018 Score=64.81 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHH
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La 35 (236)
.++|+++.|+||+|||||||++.|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 5689999999999999999999665
No 257
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.11 E-value=0.00031 Score=68.69 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=30.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
...+++.++|+||+|||||||+++|++.++..++.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 45778899999999999999999999988766543
No 258
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.11 E-value=0.00016 Score=62.98 Aligned_cols=28 Identities=32% Similarity=0.581 Sum_probs=23.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
...+| +.+|+||||||||||+.+|...+
T Consensus 21 ~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 21 GFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp ECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred ecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 34456 99999999999999999998644
No 259
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.09 E-value=7.6e-05 Score=66.25 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCCCCE--EEEEcCCchhHHHHHHHHHhcCCCeE
Q 048453 11 LNKPNL--VIIMGPTGSGKSKLAVDLASHFPIEI 42 (236)
Q Consensus 11 ~~~g~i--i~IiGpsGsGKSTL~~~La~~l~~~i 42 (236)
.++|++ ++|+|++||||||++++|++.++..+
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 445666 99999999999999999999876554
No 260
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.09 E-value=0.0002 Score=64.94 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEcCCchhHHHHHHHHHhc
Q 048453 17 VIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~ 37 (236)
++|+|+||||||||+++|++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 799999999999999999984
No 261
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.08 E-value=0.00025 Score=54.86 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|+|++|+|||||++.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 262
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.07 E-value=0.00035 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+..+.|+||+|+|||||++.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999984
No 263
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.07 E-value=0.00023 Score=65.91 Aligned_cols=28 Identities=36% Similarity=0.672 Sum_probs=24.3
Q ss_pred EEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 17 VIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
+.|+||+|||||||+++|++..+..++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 8999999999999999999977655443
No 264
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.05 E-value=0.00019 Score=59.57 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
..+|+|.|+.||||||+++.||..++.+++..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~ 45 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDD 45 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcH
Confidence 35899999999999999999999999988763
No 265
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.00027 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..+.+|+|||||||||++.+|.-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999653
No 266
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.05 E-value=0.00025 Score=70.98 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=21.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
|++++|+||||||||||++.| +
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-G 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-G 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-H
T ss_pred CcEEEEECCCCCChHHHHHHH-H
Confidence 899999999999999999999 6
No 267
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.04 E-value=0.00026 Score=59.10 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=27.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
.++|+||+||||||+++.|+..++...++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 489999999999999999999988887754
No 268
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.04 E-value=0.00026 Score=58.31 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=28.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
-.++|+|..||||||+++.++. +|.+++++|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 3589999999999999999988 8999998876
No 269
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.03 E-value=0.00036 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+..+.|.||+|+|||||++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999853
No 270
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.02 E-value=0.00031 Score=61.85 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.+..+.|.||+|||||+++++|+..++.+++..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 45568999999999999999999988877665443
No 271
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00033 Score=63.78 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.+...=+.+.||+|||||+|++++|+.++..++..+...+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4556678999999999999999999999988876655444
No 272
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.01 E-value=0.00035 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.+++|+|++|||||||+..|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999874
No 273
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00035 Score=63.51 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.....=+.+.||+|||||+|+++||+.++..++..+...+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 3445668999999999999999999999988876655543
No 274
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.99 E-value=0.0003 Score=61.60 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=25.9
Q ss_pred HHHHccChhHhhccCCCchHHHHHHHHHHHHhCCC
Q 048453 186 DLLKDLDPVAANRIHPNNYRKINQYLSLYARTGVL 220 (236)
Q Consensus 186 ~~L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~ 220 (236)
..+.-+|++.+. +||..+..+...|.-+...|.+
T Consensus 273 p~~lllDEp~~~-LD~~~~~~l~~~l~~~~~~~~~ 306 (339)
T 3qkt_A 273 ISLLILDEPTPY-LDEERRRKLITIMERYLKKIPQ 306 (339)
T ss_dssp TCEEEEECCCTT-CCHHHHHHHHHHHHHTGGGSSE
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHHHHHhcCCE
Confidence 345677999988 9998888888888776655643
No 275
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.99 E-value=0.00031 Score=66.37 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=25.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
...|..++|+||+|||||||+++|++.++
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35678999999999999999999999543
No 276
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.98 E-value=0.00024 Score=64.49 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
++.+++|+|++||||||++..||+ .+...++.| +.+.|+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~-----~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL-----YYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH-----HHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-----HHHHcCCeEEEeeccc
Confidence 678999999999999999999999 555555555 444444
No 277
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.98 E-value=0.00041 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+..+.|+||+|+|||+|++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999843
No 278
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.98 E-value=0.00022 Score=64.56 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=24.8
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..+.+..++|+|+||||||||+++|++.
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3456788999999999999999999985
No 279
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.97 E-value=0.0003 Score=58.38 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=25.5
Q ss_pred CccccCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 6 SKQRALNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 6 ~~~~~~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
..+|...+|.+|+|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 13 EAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp ------CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456677899999999999999999999998543
No 280
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.95 E-value=0.00029 Score=58.62 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
|.+|.+|+|.|++||||||+++.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999865
No 281
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.95 E-value=0.00038 Score=57.48 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=26.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPI 40 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~ 40 (236)
|.+|.+++|.|+.||||||+++.|+..++.
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999997654
No 282
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.93 E-value=0.00038 Score=59.38 Aligned_cols=25 Identities=40% Similarity=0.682 Sum_probs=22.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
...+.|+||+|+||||++++|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999999943
No 283
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00039 Score=63.31 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.++..=+.|.||+|||||+|+++||+.+++.++..+...+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4556678999999999999999999999988776555443
No 284
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.93 E-value=0.00033 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|||||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999883
No 285
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.00044 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 286
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.91 E-value=0.00044 Score=61.10 Aligned_cols=34 Identities=41% Similarity=0.701 Sum_probs=28.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
...+.|+||+|+|||+++++|+..++..++..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 4568999999999999999999988776655443
No 287
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.91 E-value=0.00033 Score=65.01 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPI 40 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~ 40 (236)
+.+.++.|+|.+||||||++++|+.+++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999997663
No 288
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.91 E-value=0.00049 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..+.|.||+|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999983
No 289
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.89 E-value=0.0003 Score=59.15 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
..++.+|+|.|+.||||||+++.|+..++
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35678999999999999999999999773
No 290
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.87 E-value=0.0008 Score=53.87 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.|.-+.|.|+||+|||||+..|..+ +..+++-|...+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i 51 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDL 51 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEE
Confidence 3567899999999999999999873 677777777666
No 291
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00044 Score=62.30 Aligned_cols=40 Identities=33% Similarity=0.584 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.++..=+.+.||+|||||.|++++|+..++.++..+...+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 3444558899999999999999999999988876655444
No 292
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.85 E-value=0.00057 Score=60.71 Aligned_cols=23 Identities=35% Similarity=0.353 Sum_probs=20.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+++|+|++|||||||++.|++.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999984
No 293
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.85 E-value=0.00043 Score=58.76 Aligned_cols=32 Identities=34% Similarity=0.625 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
.+.-+.|.||+|+|||++++.++..++..++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34568899999999999999999987765543
No 294
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.85 E-value=0.00044 Score=58.18 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
....+.|.||+|+|||+|+++++..++..++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34568999999999999999999977765543
No 295
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.85 E-value=0.00024 Score=59.48 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=25.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
-+.|.||+|+|||+|+++|+..++..++..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 3789999999999999999997766554433
No 296
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.00074 Score=58.74 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC-CCeEEc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF-PIEIIN 44 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l-~~~ii~ 44 (236)
++.-+.|.||+|+|||+|+++++..+ +..++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 44678999999999999999999977 555443
No 297
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00072 Score=55.96 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
+.+++|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999774
No 298
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.83 E-value=0.00023 Score=70.60 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.1
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHH
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDL 34 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~L 34 (236)
+...+.|++++|+|+||||||||++.|
T Consensus 662 sl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 662 DVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 445688999999999999999999985
No 299
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.83 E-value=0.00045 Score=56.98 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...++|+|++|+|||||++.|.+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 356899999999999999999984
No 300
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.83 E-value=0.00082 Score=59.19 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
....-+.|.||+|+|||+|+++|+..++..++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 34567999999999999999999998887665433
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.82 E-value=0.00024 Score=61.47 Aligned_cols=38 Identities=32% Similarity=0.573 Sum_probs=30.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce-ecCeec
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV-YQGLDV 56 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i-~~g~dI 56 (236)
+.+++++|++|+||||++..||. .+...++.+ +-+.|+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~-----~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY-----FYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH-----HHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-----HHHHCCCeEEEEecCC
Confidence 88999999999999999999998 555555555 444454
No 302
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.81 E-value=0.00071 Score=58.60 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
+..-+.|.||+|+|||+|+++++..++..++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 345689999999999999999999887766544
No 303
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.00053 Score=59.71 Aligned_cols=26 Identities=35% Similarity=0.669 Sum_probs=22.5
Q ss_pred CCCE--EEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNL--VIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~i--i~IiGpsGsGKSTL~~~La~~l 38 (236)
.|++ +.|.||+|+||||+++++++.+
T Consensus 43 ~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 43 EGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp TTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4555 8999999999999999999953
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.80 E-value=0.00034 Score=63.68 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
++.+++++||+||||||++..||..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999973
No 305
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.80 E-value=0.00064 Score=64.58 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC---CCeEEc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF---PIEIIN 44 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l---~~~ii~ 44 (236)
++.+|.|+|.+||||||+++.|+..+ +..++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~ 85 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 85 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 67789999999999999999999976 544443
No 306
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.00059 Score=58.88 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+..+.|.||+|+|||||++.|++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35679999999999999999999854
No 307
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.78 E-value=0.001 Score=59.14 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQ 49 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~ 49 (236)
.+.-+.|.||+|+|||+|+++|+..++..++..+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 3567999999999999999999999888877655443
No 308
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.78 E-value=0.00094 Score=54.89 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeE
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEI 42 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~i 42 (236)
.++...+.|.||.|+||||++.+|++.+...+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 34456799999999999999999999654443
No 309
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00076 Score=61.22 Aligned_cols=40 Identities=25% Similarity=0.436 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.+...=+.+.||+|||||.|+++||+.++..++..+...+
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 4455668999999999999999999999988877665544
No 310
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.00061 Score=59.28 Aligned_cols=27 Identities=37% Similarity=0.584 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+..++|+||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999854
No 311
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00058 Score=62.53 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.....=+.|.||+|||||+|+++||+.++..++..+...+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 4556678999999999999999999999988876655444
No 312
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.74 E-value=0.00093 Score=60.54 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=28.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCC-------eEEcCCCCce-ecCeec
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPI-------EIINADSMQV-YQGLDV 56 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~-------~ii~~dsg~i-~~g~dI 56 (236)
-.++|+|++|||||||++.|++.... ....+..+.+ ++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47999999999999999999985321 1122445555 566654
No 313
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.73 E-value=0.00022 Score=70.57 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.5
Q ss_pred cccCCCCCEEEEEcCCchhHHHHHHHHH
Q 048453 8 QRALNKPNLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 8 ~~~~~~g~ii~IiGpsGsGKSTL~~~La 35 (236)
+...+.|++++|+|+||||||||++.|+
T Consensus 644 sl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4456889999999999999999999853
No 314
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.00083 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..+.-+.|.||+|+|||++++.|+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 34556899999999999999999884
No 315
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.72 E-value=0.0007 Score=61.77 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=28.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
.-+.|+||+||||||++++||+.++..++..+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 448899999999999999999999887765544
No 316
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.71 E-value=0.00077 Score=62.05 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=25.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
-+.|+||+|+|||||+++|++..+.+++..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 488999999999999999999887766543
No 317
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.71 E-value=0.0011 Score=52.15 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.6
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
+......++|+|++|+|||||++.+.+.
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344567999999999999999999874
No 318
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0012 Score=61.05 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
....+.|.||+|+||||++++++..++..++..+.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 34689999999999999999999998877765443
No 319
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.70 E-value=0.00054 Score=60.52 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|.++.|.||+|||||||+..++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999999885
No 320
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.69 E-value=0.00099 Score=57.62 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=25.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
..+.|.||+|+|||+|++.|+..++..++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 458999999999999999999987766543
No 321
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.69 E-value=0.00075 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
+.-.++|+|++|+|||||++.+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3346899999999999999999864
No 322
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.67 E-value=0.00093 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+.|.||+|+|||||++.+++.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999854
No 323
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.66 E-value=0.00068 Score=55.68 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+|.+|+|.|+.||||||+++.|+..+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998854
No 324
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.63 E-value=0.00098 Score=58.74 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=27.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
..-+.|.||+|+|||+|+++++..++..++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 345889999999999999999998887765443
No 325
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.62 E-value=0.00051 Score=67.11 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=31.0
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCC
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSM 48 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg 48 (236)
...++..+.|+||+|||||||+++||+.++..++..+..
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 545 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech
Confidence 345678899999999999999999999776655544433
No 326
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.62 E-value=0.00078 Score=56.31 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+|.+++|.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999854
No 327
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.61 E-value=0.0016 Score=50.14 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
++...++|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999863
No 328
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=54.72 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHH
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La 35 (236)
..|+.++|+|||||||||++..+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 358899999999999999877664
No 329
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.60 E-value=0.00099 Score=57.40 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
++.+++|+|++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999984
No 330
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.58 E-value=0.0016 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
....++|+|++|||||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3357999999999999999999874
No 331
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0013 Score=51.62 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
....++|+|++|||||||++.+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
No 332
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.57 E-value=0.0013 Score=57.37 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCce
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQV 50 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i 50 (236)
.|.-++|+|+||+||||++..|.++ +..+++.|...+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i 179 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEI 179 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEE
Confidence 4677999999999999999999875 677887777766
No 333
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.57 E-value=0.0012 Score=57.73 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.++|+||+|+|||||++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999865
No 334
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.56 E-value=0.0013 Score=56.02 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+..+.|.||+|+|||+|+++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999999865
No 335
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.55 E-value=0.0015 Score=56.40 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEE
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEII 43 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii 43 (236)
+.-+.|.||+|+|||+|++.++..++..+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 456899999999999999999998876543
No 336
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.55 E-value=0.0011 Score=50.48 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 337
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.53 E-value=0.0011 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 338
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.52 E-value=0.001 Score=60.55 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC--CeEEcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP--IEIINAD 46 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~--~~ii~~d 46 (236)
++.-+.|.||+|+|||+|++++|..++ ..++..+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 345689999999999999999999877 5555433
No 339
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.51 E-value=0.001 Score=54.66 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+|.+|+|.|+.||||||+++.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999854
No 340
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.51 E-value=0.0013 Score=59.06 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=25.9
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.+..+|+.++|+||+|+|||||++.|++
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 4578899999999999999999999998
No 341
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.51 E-value=0.0019 Score=58.63 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC-CCeEEcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF-PIEIINAD 46 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l-~~~ii~~d 46 (236)
+..-+.|.||+|+|||+|+++|+..+ +..++..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 44678999999999999999999987 55554433
No 342
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.50 E-value=0.0011 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 343
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.50 E-value=0.0018 Score=60.01 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
..++..+.|+|+|||||||+++.|..
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 44577899999999999999999864
No 344
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.49 E-value=0.0008 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.+.-+.|.||+|+|||++++.|+...+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 345588999999999999999987544
No 345
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.48 E-value=0.0015 Score=59.64 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=25.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCCeEE
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPIEII 43 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~~ii 43 (236)
..+.|.||+|+|||||++.|++.++..++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 35899999999999999999998876654
No 346
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.48 E-value=0.0017 Score=52.36 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.....++|+|++|+|||||++.|.+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34467999999999999999999874
No 347
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.48 E-value=0.0013 Score=57.67 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|.++.|+||+|||||||+..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999999873
No 348
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.47 E-value=0.0016 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 349
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.47 E-value=0.0013 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 350
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.45 E-value=0.0012 Score=61.30 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.+.+|+++|.+||||||+++.|+..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998653
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0014 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEEcCCchhHHHHHHHHHh
Q 048453 16 LVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|+|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.44 E-value=0.0014 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.44 E-value=0.0024 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999877663
No 354
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0014 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=20.7
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+.|.||+|+|||+|++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998853
No 355
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=50.35 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999874
No 356
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.43 E-value=0.0014 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 357
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.41 E-value=0.0015 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 358
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.41 E-value=0.0015 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|||||||++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 359
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.41 E-value=0.0014 Score=55.22 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|||||||++.|.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 360
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.40 E-value=0.0018 Score=49.50 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+.-.++|+|++|+|||||++.+.+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34456899999999999999999763
No 361
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.40 E-value=0.0017 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
+|.+++|+||.||||||++..++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999866664
No 362
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.40 E-value=0.0019 Score=49.92 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=21.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..+.-.++|+|++|+|||||++.+.+.
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 344556899999999999999999864
No 363
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.40 E-value=0.0015 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999863
No 364
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.39 E-value=0.0014 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 365
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.38 E-value=0.0013 Score=60.92 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
..+| +.+|+|+||||||||+.+|...++
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3445 999999999999999999976543
No 366
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.38 E-value=0.0012 Score=57.39 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999865
No 367
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.38 E-value=0.0011 Score=56.76 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=25.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEE
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEII 43 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii 43 (236)
...+.|.||+|+|||+|++.++..++..++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999987765543
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.37 E-value=0.0014 Score=58.02 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHH
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLA 35 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La 35 (236)
..+.+|+||||||||||+-+|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 369
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.37 E-value=0.0016 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 370
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.37 E-value=0.0016 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 371
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.37 E-value=0.0019 Score=57.98 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=24.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
....+..++|+|++|+|||||+++|++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4556778999999999999999999984
No 372
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.36 E-value=0.0016 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 373
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.0014 Score=57.24 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.+..+.|.||+|+|||+|++.++..++
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999998665
No 374
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.36 E-value=0.0012 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4899999999999999999764
No 375
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.35 E-value=0.0013 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=20.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.|++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 376
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.34 E-value=0.0015 Score=57.97 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+.-++|+|||||||||+++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999874
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.31 E-value=0.0018 Score=49.23 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 378
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.31 E-value=0.002 Score=58.58 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=25.1
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
...+|++++|+|++|+|||||+..++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999999987
No 379
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.31 E-value=0.0016 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 380
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.30 E-value=0.0021 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 381
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0015 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 382
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.27 E-value=0.0017 Score=62.10 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=30.5
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCCCceecCeec
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADSMQVYQGLDV 56 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~dsg~i~~g~dI 56 (236)
...++..++|+|++|+|||||+..|++..+. ....|.|.+|..+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~---~~~~G~V~~g~~~ 48 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGA---KERRGRVEEGTTT 48 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTS---SSSCCCGGGTCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCC---CCccceecCCccc
Confidence 3466789999999999999999999974332 1234445444444
No 383
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.26 E-value=0.0024 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+..+.|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999854
No 384
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.26 E-value=0.0023 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
+.-+.|.||+|+|||+|+.+|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999873
No 385
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.26 E-value=0.002 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 386
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.26 E-value=0.002 Score=50.15 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 387
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.25 E-value=0.0019 Score=56.14 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|.++.|.||+|||||||+..++..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 467899999999999999999999863
No 388
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.24 E-value=0.002 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 389
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.24 E-value=0.0018 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4799999999999999999873
No 390
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.24 E-value=0.0021 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|.++.|.|++|+|||+|+..++-
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999987753
No 391
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.23 E-value=0.0028 Score=50.91 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
...++|+|++|+|||||++.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998743
No 392
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.22 E-value=0.0022 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 393
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.22 E-value=0.0019 Score=58.56 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+..+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999854
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.21 E-value=0.002 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 395
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.21 E-value=0.002 Score=49.91 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999863
No 396
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.21 E-value=0.0022 Score=48.66 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCchhHHHHHHHHHh
Q 048453 16 LVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|+|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999975
No 397
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.21 E-value=0.0034 Score=57.87 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINAD 46 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~d 46 (236)
....-+.|.||+|+|||+|+++|+..++..++..+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 34556899999999999999999998877665443
No 398
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.21 E-value=0.0015 Score=61.52 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
..+.+|.|+|++||||||+++.|+..++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999998654
No 399
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.20 E-value=0.0033 Score=61.36 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcCCCeEEcCCC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHFPIEIINADS 47 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ds 47 (236)
..+..-+.|.||+|||||+|++++|+.++..++..+.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 4556678999999999999999999999988765443
No 400
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.18 E-value=0.0023 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 401
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.18 E-value=0.0028 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.7
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
...+|+++.|.|++|+|||||+..++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 367899999999999999999999986
No 402
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.18 E-value=0.0025 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
++.|+|++||||||++..++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999974
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.18 E-value=0.0022 Score=51.69 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...++|+|++|||||||+..|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.18 E-value=0.0019 Score=51.35 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=22.0
Q ss_pred ccCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 9 RALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 9 ~~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
|+..+.-.++|+|++|+|||||++.+.+.
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 33344456899999999999999999874
No 405
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.17 E-value=0.0023 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHh
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~ 36 (236)
-.++|+|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 406
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.17 E-value=0.0023 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
-.|+|+|.+|+|||||++.|.+.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998753
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0026 Score=50.24 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+.-.++|+|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456899999999999999999874
No 408
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.15 E-value=0.0021 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 409
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.15 E-value=0.0019 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 410
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.14 E-value=0.0028 Score=49.51 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.++|+|++|+|||||++.+.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999988654
No 411
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.13 E-value=0.0026 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.-.++|+|++|+|||||++.+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999873
No 412
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0026 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 413
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.0023 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+.|.||+|+||||+++++++.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999864
No 414
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.12 E-value=0.0028 Score=57.97 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..-+.|+||+|+|||+|++.|+..+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999864
No 415
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.12 E-value=0.0026 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=20.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 416
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.11 E-value=0.0031 Score=52.67 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.+..+.|.||+|+|||+|++.|+...+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 345688999999999999999998653
No 417
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.10 E-value=0.0025 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 418
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.09 E-value=0.0018 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHh
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~ 36 (236)
-.++|+|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3579999999999999999976
No 419
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.0031 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHh
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~ 36 (236)
-.++|+|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4689999999999999999987
No 420
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.07 E-value=0.0028 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|+|++|||||||++.|++.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999984
No 421
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.06 E-value=0.0029 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35799999999999999999864
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.06 E-value=0.0029 Score=49.00 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 423
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.06 E-value=0.0032 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 424
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.05 E-value=0.0027 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 425
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.05 E-value=0.0029 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 426
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.05 E-value=0.0029 Score=55.64 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHh
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~ 36 (236)
..|+|+|++|||||||++.|.+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999998
No 427
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.05 E-value=0.0029 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 428
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.05 E-value=0.0029 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 429
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.01 E-value=0.0011 Score=60.61 Aligned_cols=27 Identities=22% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
...+|+++|.+||||||+++.|+..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999998654
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.01 E-value=0.0032 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..-.++|+|++|+|||||++.+.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999863
No 431
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0029 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 432
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.00 E-value=0.0019 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999974
No 433
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.00 E-value=0.0022 Score=55.40 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
-+.|.||+|+|||+|++.|+..++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 389999999999999999998665
No 434
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.99 E-value=0.0036 Score=52.41 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=26.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhcCCCeEEcC
Q 048453 16 LVIIMGPTGSGKSKLAVDLASHFPIEIINA 45 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~l~~~ii~~ 45 (236)
+++|+|+.||||||+++.|...++..++.+
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~ 32 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQL 32 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence 799999999999999999998777766544
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.96 E-value=0.0033 Score=49.25 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.96 E-value=0.0035 Score=49.68 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+.-.++|+|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34456899999999999999999874
No 437
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.0032 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
....++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998853
No 438
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.96 E-value=0.0034 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 439
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.95 E-value=0.0024 Score=62.59 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHccChhHhhccCCCchHHHHHHHHHHHHhCCCc
Q 048453 188 LKDLDPVAANRIHPNNYRKINQYLSLYARTGVLP 221 (236)
Q Consensus 188 L~~~Dp~~a~~i~~~d~~ri~rale~~~~tg~~~ 221 (236)
|.-+|++++. +||.+..++.+.|..+...|.++
T Consensus 402 llILDEPT~~-Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 402 VYVLDEPSAG-LHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp EEEEECTTTT-CCGGGHHHHHHHHHHHHTTTCEE
T ss_pred EEEeeCcccc-CCHHHHHHHHHHHHHHHHcCCEE
Confidence 6678999998 99999999999998888777653
No 440
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.95 E-value=0.0035 Score=49.33 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 441
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.94 E-value=0.0028 Score=54.75 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|.++.|.||+|||||||+..++.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
No 442
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.94 E-value=0.0035 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|.+|||||||++.|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999884
No 443
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.94 E-value=0.003 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...|+|+|++|||||||+..|.+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 444
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.93 E-value=0.0031 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
+.-.++|+|++|+|||||++.+.+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999864
No 445
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.92 E-value=0.0038 Score=51.70 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+|.++++.||+|+||||++..++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 568899999999999999988877643
No 446
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.92 E-value=0.0043 Score=53.26 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=25.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcCCCeEEc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHFPIEIIN 44 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l~~~ii~ 44 (236)
..++.+.||+|+|||+++++++..++..++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3577888999999999999999988765543
No 447
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.90 E-value=0.0036 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
+...++|+|.+|||||||+..++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999874
No 448
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0034 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999999874
No 449
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0038 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 450
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.89 E-value=0.0038 Score=48.62 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
+.-.++|+|++|+|||||++.+.+.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998743
No 451
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.88 E-value=0.0035 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 452
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.88 E-value=0.0025 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHh
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~ 36 (236)
-.++|+|++|+|||||++.+++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 453
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.88 E-value=0.0027 Score=56.17 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEcCCchhHHHHHHHHHhc
Q 048453 17 VIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 17 i~IiGpsGsGKSTL~~~La~~ 37 (236)
++|+|++|+|||||++.|.+.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 799999999999999998763
No 454
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.87 E-value=0.0039 Score=49.50 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|.+|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.87 E-value=0.0039 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.-.++|+|++|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 456
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.86 E-value=0.0017 Score=60.65 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcCC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHFP 39 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l~ 39 (236)
.+.+++|+|++||||||+++.|+..++
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999998543
No 457
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.85 E-value=0.0032 Score=49.70 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999763
No 458
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0037 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 459
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.84 E-value=0.0037 Score=49.21 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999998864
No 460
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.83 E-value=0.0037 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 461
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.83 E-value=0.0065 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=21.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
+..++|+|.+|+|||||+++|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999884
No 462
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.79 E-value=0.0044 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...++|+|++|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999873
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.79 E-value=0.0047 Score=49.34 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 33456899999999999999999864
No 464
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.79 E-value=0.0032 Score=53.16 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=19.2
Q ss_pred EEEEEcCCchhHHHHHHHHHh
Q 048453 16 LVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~ 36 (236)
.++|+|.+|+|||||++.|.+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999865
No 465
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.78 E-value=0.0052 Score=48.61 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.+.-.++|+|.+|+|||||++.+.+.+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 344579999999999999999998854
No 466
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.77 E-value=0.0047 Score=59.69 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
...-+.|+||+|+|||++++.|+..+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34458999999999999999999875
No 467
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.77 E-value=0.0033 Score=49.38 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
....++|+|++|+|||||++.+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
No 468
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.77 E-value=0.0041 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 469
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0049 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
+.-.++|+|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999985
No 470
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0041 Score=49.67 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=20.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|+|++|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 471
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0067 Score=52.87 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
...+..+.|.||+|+|||++++.++..+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567789999999999999999999865
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.74 E-value=0.0038 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
|++|+|=|+-||||||+++.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999999854
No 473
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.74 E-value=0.0046 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..-.++|+|++|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999863
No 474
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.71 E-value=0.0048 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhcCCC
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASHFPI 40 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~l~~ 40 (236)
..+.|.||+|+||||+++.+++.+++
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999986653
No 475
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.71 E-value=0.003 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
.-.++|+|++|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998743
No 476
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.71 E-value=0.0049 Score=54.51 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|.++.|.|++|||||||+..++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998753
No 477
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.70 E-value=0.0048 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 478
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.70 E-value=0.0046 Score=54.97 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 479
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.70 E-value=0.004 Score=53.70 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.+.-.++|+|.+|+|||||++.|.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33467899999999999999999874
No 480
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.70 E-value=0.0037 Score=54.74 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 12 NKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 12 ~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
++|.++.|.||+|||||||+..++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567789999999999999999986
No 481
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.70 E-value=0.0061 Score=49.14 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+|.+.+++||.||||||.+..++.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3568899999999999999998887754
No 482
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.68 E-value=0.0048 Score=56.19 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
++.+++++|++||||||++..||..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999999864
No 483
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.67 E-value=0.0046 Score=49.81 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 484
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.67 E-value=0.0032 Score=62.23 Aligned_cols=29 Identities=41% Similarity=0.510 Sum_probs=24.2
Q ss_pred CCCccccCCCCCEEEEEcCCchhHHHHHH
Q 048453 4 GGSKQRALNKPNLVIIMGPTGSGKSKLAV 32 (236)
Q Consensus 4 ~~~~~~~~~~g~ii~IiGpsGsGKSTL~~ 32 (236)
.+-.+..++++++++|+|+||||||+|+-
T Consensus 14 Lkni~~~ip~~~l~v~tG~SGSGKSsLaf 42 (916)
T 3pih_A 14 LKNITVRIPKNRLVVITGVSGSGKSSLAM 42 (916)
T ss_dssp CCSBCCEEETTSEEEEEESTTSSSHHHHT
T ss_pred cCcceeccCCCcEEEEECCCCCcHHHHHH
Confidence 34456667899999999999999999973
No 485
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.67 E-value=0.0054 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
..++|+|.+|+|||||++.|.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 486
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.65 E-value=0.003 Score=48.99 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=9.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHh
Q 048453 15 NLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~ 36 (236)
-.++|+|++|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999975
No 487
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.64 E-value=0.005 Score=48.95 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 488
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.63 E-value=0.0058 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhc
Q 048453 16 LVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 16 ii~IiGpsGsGKSTL~~~La~~ 37 (236)
.++|+|.+|||||||++.|.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999873
No 489
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.62 E-value=0.0037 Score=61.96 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=23.5
Q ss_pred CCccccCCCCCEEEEEcCCchhHHHHHH
Q 048453 5 GSKQRALNKPNLVIIMGPTGSGKSKLAV 32 (236)
Q Consensus 5 ~~~~~~~~~g~ii~IiGpsGsGKSTL~~ 32 (236)
+-.+..++++++++|+|+||||||||+-
T Consensus 35 kni~v~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp CSEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred CceeeeccCCcEEEEECCCCCCHHHHHH
Confidence 3445567889999999999999999974
No 490
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.62 E-value=0.0036 Score=62.17 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=23.5
Q ss_pred CCccccCCCCCEEEEEcCCchhHHHHHH
Q 048453 5 GSKQRALNKPNLVIIMGPTGSGKSKLAV 32 (236)
Q Consensus 5 ~~~~~~~~~g~ii~IiGpsGsGKSTL~~ 32 (236)
+-.+..++++++++|+|+||||||+|+-
T Consensus 37 kni~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 37 RSVDLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp CSEEEEEESSSEEEEEESTTSSHHHHHT
T ss_pred CceeeeccCCCEEEEECCCCCcHHHHHH
Confidence 3345567889999999999999999974
No 491
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.62 E-value=0.0034 Score=50.35 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998853
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0052 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 493
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.57 E-value=0.0062 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...+++|+|++|+|||||+..|+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999874
No 494
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.57 E-value=0.0065 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh
Q 048453 11 LNKPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 11 ~~~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
..+|.++.|.|++|+|||||+..++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999999987
No 495
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.55 E-value=0.0041 Score=56.46 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhcC
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASHF 38 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~l 38 (236)
..+++|+|++|+||||++..|+..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999854
No 496
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.55 E-value=0.0059 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhc
Q 048453 14 PNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 14 g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-..++|+|.+|+|||||+..|.+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 357999999999999999999884
No 497
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.53 E-value=0.006 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|.+|||||||++.|.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999885
No 498
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.50 E-value=0.0072 Score=53.14 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=25.2
Q ss_pred cCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 048453 10 ALNKPNLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 10 ~~~~g~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
...+|+++.|.|++|+|||||+..+|..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999873
No 499
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.50 E-value=0.0064 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhc
Q 048453 15 NLVIIMGPTGSGKSKLAVDLASH 37 (236)
Q Consensus 15 ~ii~IiGpsGsGKSTL~~~La~~ 37 (236)
-.++|+|.+|+|||||++.|.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 500
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.48 E-value=0.0063 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh
Q 048453 13 KPNLVIIMGPTGSGKSKLAVDLAS 36 (236)
Q Consensus 13 ~g~ii~IiGpsGsGKSTL~~~La~ 36 (236)
+.-.++|+|++|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999975
Done!