Query 048456
Match_columns 211
No_of_seqs 143 out of 553
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 4E-13 8.7E-18 95.4 9.7 62 108-169 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.4 4E-12 8.6E-17 90.1 9.5 61 109-169 3-63 (64)
3 KOG4005 Transcription factor X 99.3 1.3E-11 2.8E-16 108.7 12.1 88 96-183 53-141 (292)
4 PF07716 bZIP_2: Basic region 99.2 2.4E-10 5.2E-15 78.8 8.4 52 108-160 2-53 (54)
5 KOG4343 bZIP transcription fac 99.1 2.2E-10 4.7E-15 110.0 7.2 64 111-174 281-344 (655)
6 KOG0709 CREB/ATF family transc 99.0 6.4E-10 1.4E-14 105.3 6.4 68 109-183 249-316 (472)
7 KOG3584 cAMP response element 98.7 3E-08 6.6E-13 89.7 6.6 54 109-162 289-342 (348)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.9 1.8E-07 4E-12 70.9 -6.7 56 108-163 27-82 (92)
9 KOG4571 Activating transcripti 97.8 0.00057 1.2E-08 62.1 13.1 64 106-176 221-285 (294)
10 KOG0837 Transcriptional activa 97.7 0.00016 3.5E-09 64.9 8.3 53 108-160 202-255 (279)
11 PF06005 DUF904: Protein of un 96.7 0.038 8.3E-07 40.6 10.6 51 132-182 4-54 (72)
12 PF06156 DUF972: Protein of un 96.6 0.013 2.9E-07 46.1 7.6 49 133-181 9-57 (107)
13 PF11559 ADIP: Afadin- and alp 96.4 0.15 3.2E-06 41.3 13.4 90 115-204 35-124 (151)
14 PRK13169 DNA replication intia 96.4 0.017 3.7E-07 45.8 7.6 49 133-181 9-57 (110)
15 KOG3119 Basic region leucine z 96.3 0.049 1.1E-06 48.8 10.6 63 107-176 190-252 (269)
16 KOG4196 bZIP transcription fac 96.1 0.078 1.7E-06 43.4 9.7 65 108-179 50-114 (135)
17 PRK15422 septal ring assembly 95.9 0.19 4E-06 37.8 10.4 68 133-207 5-76 (79)
18 PF14197 Cep57_CLD_2: Centroso 95.8 0.22 4.8E-06 36.3 10.3 59 136-201 2-60 (69)
19 PF14662 CCDC155: Coiled-coil 95.7 0.18 3.9E-06 43.7 10.9 71 132-206 8-78 (193)
20 PRK10884 SH3 domain-containing 95.6 0.26 5.7E-06 42.8 11.9 55 144-198 116-170 (206)
21 COG3074 Uncharacterized protei 95.5 0.36 7.7E-06 35.9 10.3 68 133-207 5-76 (79)
22 PF14197 Cep57_CLD_2: Centroso 95.4 0.23 5.1E-06 36.2 9.2 51 132-182 12-62 (69)
23 PF10224 DUF2205: Predicted co 95.1 0.18 3.9E-06 37.9 8.0 50 135-184 19-68 (80)
24 TIGR02449 conserved hypothetic 94.6 0.39 8.4E-06 34.9 8.3 22 161-182 15-36 (65)
25 PF14662 CCDC155: Coiled-coil 94.5 1.6 3.4E-05 38.0 13.2 73 135-207 98-191 (193)
26 COG4467 Regulator of replicati 94.2 0.2 4.4E-06 39.8 6.7 51 133-183 9-61 (114)
27 PF12325 TMF_TATA_bd: TATA ele 94.0 2.2 4.7E-05 34.3 12.4 73 134-206 25-114 (120)
28 PF10146 zf-C4H2: Zinc finger- 93.8 3.6 7.8E-05 36.4 14.6 81 126-206 26-107 (230)
29 KOG3863 bZIP transcription fac 93.6 0.18 3.8E-06 50.3 6.5 64 113-183 492-555 (604)
30 PF08614 ATG16: Autophagy prot 93.2 2.4 5.1E-05 35.9 12.0 40 136-175 141-180 (194)
31 PRK11637 AmiB activator; Provi 93.2 3.1 6.7E-05 39.1 14.0 48 132-179 68-115 (428)
32 TIGR02449 conserved hypothetic 93.1 0.93 2E-05 32.9 8.0 46 135-180 3-48 (65)
33 COG1579 Zn-ribbon protein, pos 93.1 6.3 0.00014 35.2 15.5 75 109-183 29-112 (239)
34 COG2433 Uncharacterized conser 92.9 1.1 2.3E-05 45.0 10.7 42 134-175 424-465 (652)
35 TIGR02894 DNA_bind_RsfA transc 92.7 1.8 3.9E-05 36.6 10.4 51 132-182 87-140 (161)
36 KOG4005 Transcription factor X 92.7 1.5 3.2E-05 39.6 10.3 57 130-186 94-151 (292)
37 PF07989 Microtub_assoc: Micro 92.3 2.9 6.2E-05 30.9 10.0 50 134-183 2-59 (75)
38 PF12711 Kinesin-relat_1: Kine 92.3 2.4 5.2E-05 32.4 9.7 58 144-203 22-85 (86)
39 PRK11637 AmiB activator; Provi 92.0 7.9 0.00017 36.4 15.0 69 129-197 58-126 (428)
40 PF08614 ATG16: Autophagy prot 92.0 2.8 6E-05 35.5 10.9 46 138-183 115-160 (194)
41 PF06005 DUF904: Protein of un 91.8 3.9 8.5E-05 30.0 10.2 38 142-179 7-44 (72)
42 TIGR03752 conj_TIGR03752 integ 91.7 1.6 3.5E-05 42.5 10.1 45 135-179 76-121 (472)
43 COG3074 Uncharacterized protei 91.6 2.1 4.6E-05 31.8 8.4 42 134-175 20-61 (79)
44 COG4026 Uncharacterized protei 91.6 2.8 6.1E-05 37.7 10.7 63 135-204 138-200 (290)
45 PF04102 SlyX: SlyX; InterPro 91.4 1.3 2.7E-05 32.0 7.0 50 132-181 4-53 (69)
46 PF05911 DUF869: Plant protein 91.2 4.4 9.4E-05 41.8 13.1 51 155-205 136-207 (769)
47 PF09730 BicD: Microtubule-ass 91.2 3.7 8E-05 42.0 12.5 64 133-200 70-133 (717)
48 PRK09039 hypothetical protein; 91.2 11 0.00024 34.9 14.8 39 141-179 125-163 (343)
49 PF04111 APG6: Autophagy prote 91.1 6.6 0.00014 36.0 13.1 45 135-179 46-90 (314)
50 PRK13729 conjugal transfer pil 91.1 1.2 2.6E-05 43.4 8.6 47 133-179 77-123 (475)
51 PRK00295 hypothetical protein; 91.1 1.8 4E-05 31.2 7.7 47 134-180 7-53 (68)
52 PF12325 TMF_TATA_bd: TATA ele 91.0 7 0.00015 31.4 12.4 65 132-200 16-80 (120)
53 PRK10884 SH3 domain-containing 90.8 6.9 0.00015 34.0 12.3 55 133-187 119-173 (206)
54 PRK02119 hypothetical protein; 90.6 1.8 3.9E-05 31.7 7.3 47 133-179 10-56 (73)
55 PRK02793 phi X174 lysis protei 90.3 2.3 5E-05 31.1 7.6 49 132-180 8-56 (72)
56 PF02183 HALZ: Homeobox associ 90.3 1.3 2.7E-05 29.8 5.7 39 144-182 3-41 (45)
57 PRK00736 hypothetical protein; 90.2 2.6 5.5E-05 30.5 7.7 48 133-180 6-53 (68)
58 KOG1414 Transcriptional activa 89.9 0.02 4.3E-07 53.8 -4.5 60 101-160 144-207 (395)
59 PF05700 BCAS2: Breast carcino 89.9 9.9 0.00021 33.0 12.6 77 132-208 136-216 (221)
60 PF05266 DUF724: Protein of un 89.8 12 0.00026 32.1 14.8 94 109-202 87-180 (190)
61 PF15035 Rootletin: Ciliary ro 89.7 7.6 0.00016 33.1 11.5 26 151-176 86-111 (182)
62 PRK04325 hypothetical protein; 89.7 2.7 5.9E-05 30.8 7.7 47 134-180 11-57 (74)
63 PRK04406 hypothetical protein; 89.6 2.7 5.9E-05 31.0 7.6 46 133-178 12-57 (75)
64 PF12718 Tropomyosin_1: Tropom 89.6 6.7 0.00015 32.0 10.7 48 134-181 16-63 (143)
65 PF11559 ADIP: Afadin- and alp 89.6 9.6 0.00021 30.7 15.0 92 114-205 48-150 (151)
66 PF07888 CALCOCO1: Calcium bin 89.4 16 0.00035 36.4 14.9 58 116-173 155-212 (546)
67 KOG0982 Centrosomal protein Nu 89.4 12 0.00027 36.3 13.6 73 133-205 298-391 (502)
68 PF04880 NUDE_C: NUDE protein, 89.3 0.67 1.5E-05 39.2 4.7 53 134-190 2-54 (166)
69 PF15290 Syntaphilin: Golgi-lo 89.1 4.9 0.00011 37.0 10.3 12 193-204 122-133 (305)
70 PF04111 APG6: Autophagy prote 88.9 9.4 0.0002 35.0 12.3 80 123-202 55-134 (314)
71 PF07888 CALCOCO1: Calcium bin 88.9 25 0.00054 35.1 15.8 48 132-179 157-204 (546)
72 PF08172 CASP_C: CASP C termin 88.9 2.6 5.6E-05 37.6 8.3 51 121-180 84-134 (248)
73 PF15070 GOLGA2L5: Putative go 88.5 20 0.00044 36.0 15.1 52 129-180 119-194 (617)
74 PF10473 CENP-F_leu_zip: Leuci 88.4 13 0.00028 30.7 15.1 68 115-182 35-102 (140)
75 PF05837 CENP-H: Centromere pr 88.1 6.1 0.00013 30.7 9.0 48 140-187 4-51 (106)
76 COG2433 Uncharacterized conser 87.9 12 0.00025 37.9 12.8 90 118-207 421-514 (652)
77 PF10211 Ax_dynein_light: Axon 87.9 16 0.00034 31.2 12.2 35 135-169 123-157 (189)
78 PF10186 Atg14: UV radiation r 87.9 17 0.00037 31.4 15.4 52 126-177 57-108 (302)
79 PRK00846 hypothetical protein; 87.8 4.6 0.0001 30.2 7.8 49 132-180 13-61 (77)
80 COG4942 Membrane-bound metallo 87.6 21 0.00046 34.4 14.1 73 111-183 38-110 (420)
81 PF08232 Striatin: Striatin fa 87.6 7 0.00015 31.7 9.4 56 150-205 8-63 (134)
82 PF08317 Spc7: Spc7 kinetochor 87.4 8.9 0.00019 35.0 11.1 11 193-203 281-291 (325)
83 PF04849 HAP1_N: HAP1 N-termin 87.4 7.2 0.00016 36.1 10.4 37 143-179 231-267 (306)
84 PF00038 Filament: Intermediat 87.1 15 0.00033 32.6 12.2 63 142-204 78-140 (312)
85 PF09726 Macoilin: Transmembra 87.0 15 0.00033 37.4 13.4 35 125-159 481-515 (697)
86 KOG0995 Centromere-associated 86.9 26 0.00056 35.1 14.5 47 131-177 279-325 (581)
87 PF09304 Cortex-I_coil: Cortex 86.8 14 0.0003 29.4 10.4 31 144-174 42-72 (107)
88 PF15035 Rootletin: Ciliary ro 86.8 11 0.00025 32.0 10.7 35 148-182 76-110 (182)
89 PF05377 FlaC_arch: Flagella a 86.8 4 8.7E-05 28.8 6.6 44 144-194 5-48 (55)
90 PRK13169 DNA replication intia 86.7 6.4 0.00014 31.2 8.5 40 136-175 5-44 (110)
91 PF10186 Atg14: UV radiation r 86.7 16 0.00035 31.6 11.9 43 136-178 60-102 (302)
92 COG4026 Uncharacterized protei 86.6 8 0.00017 34.9 9.9 56 128-183 138-193 (290)
93 PRK09039 hypothetical protein; 86.5 11 0.00024 35.0 11.3 39 141-179 139-177 (343)
94 KOG0239 Kinesin (KAR3 subfamil 86.2 15 0.00033 37.3 12.9 69 134-202 243-314 (670)
95 PRK04863 mukB cell division pr 86.2 30 0.00065 38.3 15.9 96 111-206 321-429 (1486)
96 PRK13922 rod shape-determining 86.1 15 0.00032 32.4 11.5 41 161-205 70-110 (276)
97 PF14915 CCDC144C: CCDC144C pr 85.9 24 0.00051 32.8 12.9 67 121-187 182-248 (305)
98 KOG4643 Uncharacterized coiled 85.9 6 0.00013 42.0 9.9 75 134-208 266-342 (1195)
99 PF06156 DUF972: Protein of un 85.8 7.6 0.00017 30.5 8.5 44 136-179 5-48 (107)
100 PF09755 DUF2046: Uncharacteri 85.6 15 0.00033 34.1 11.5 47 135-181 23-69 (310)
101 PF10481 CENP-F_N: Cenp-F N-te 85.5 30 0.00064 32.0 13.1 87 111-197 18-111 (307)
102 smart00338 BRLZ basic region l 85.4 7.5 0.00016 27.1 7.6 35 140-174 27-61 (65)
103 TIGR03752 conj_TIGR03752 integ 85.3 13 0.00028 36.4 11.4 39 143-181 63-101 (472)
104 PF00170 bZIP_1: bZIP transcri 85.2 5.6 0.00012 27.7 6.8 10 166-175 39-48 (64)
105 PF07106 TBPIP: Tat binding pr 85.1 6.8 0.00015 32.2 8.4 51 131-181 85-137 (169)
106 PF10481 CENP-F_N: Cenp-F N-te 85.1 17 0.00036 33.6 11.3 92 109-202 32-123 (307)
107 PF13747 DUF4164: Domain of un 85.0 15 0.00032 27.9 10.4 69 111-179 11-79 (89)
108 KOG0999 Microtubule-associated 84.8 18 0.00039 36.5 12.3 75 109-183 115-193 (772)
109 TIGR00219 mreC rod shape-deter 84.8 2.7 5.8E-05 38.0 6.2 16 143-158 70-85 (283)
110 PF12718 Tropomyosin_1: Tropom 84.1 16 0.00034 29.9 9.9 67 134-200 23-92 (143)
111 PF09726 Macoilin: Transmembra 84.1 32 0.00069 35.2 14.1 38 137-174 543-580 (697)
112 PF07106 TBPIP: Tat binding pr 84.0 6.9 0.00015 32.2 7.9 49 134-182 81-131 (169)
113 KOG0243 Kinesin-like protein [ 83.6 26 0.00057 37.4 13.5 84 117-200 416-509 (1041)
114 KOG0971 Microtubule-associated 83.5 20 0.00044 38.0 12.4 86 120-205 398-507 (1243)
115 PRK02119 hypothetical protein; 83.4 12 0.00025 27.4 8.0 46 134-179 4-49 (73)
116 KOG0977 Nuclear envelope prote 83.2 37 0.0008 33.9 13.7 61 122-182 131-191 (546)
117 KOG0946 ER-Golgi vesicle-tethe 83.2 12 0.00026 39.0 10.6 49 131-179 649-697 (970)
118 PF13851 GAS: Growth-arrest sp 83.1 29 0.00063 29.8 15.4 58 109-166 70-127 (201)
119 PRK04406 hypothetical protein; 83.1 12 0.00026 27.5 8.1 46 134-179 6-51 (75)
120 COG3883 Uncharacterized protei 83.1 32 0.00068 31.3 12.3 56 128-183 34-89 (265)
121 KOG3650 Predicted coiled-coil 83.0 4.7 0.0001 32.0 6.1 46 137-182 61-106 (120)
122 KOG0250 DNA repair protein RAD 83.0 41 0.00088 36.1 14.5 49 131-179 371-420 (1074)
123 PF14817 HAUS5: HAUS augmin-li 83.0 29 0.00063 35.1 13.1 68 134-201 81-148 (632)
124 KOG0971 Microtubule-associated 82.7 39 0.00084 36.0 14.0 48 113-160 282-346 (1243)
125 PF15294 Leu_zip: Leucine zipp 82.5 5.3 0.00012 36.5 7.2 45 137-181 130-174 (278)
126 PF06785 UPF0242: Uncharacteri 82.2 5.5 0.00012 37.6 7.2 50 128-177 123-172 (401)
127 TIGR00219 mreC rod shape-deter 82.2 9.3 0.0002 34.5 8.6 41 163-206 69-109 (283)
128 TIGR03495 phage_LysB phage lys 82.1 27 0.00058 28.7 11.0 70 135-204 29-98 (135)
129 PRK00888 ftsB cell division pr 81.0 8 0.00017 30.1 6.8 33 149-181 30-62 (105)
130 TIGR02209 ftsL_broad cell divi 80.9 11 0.00023 27.2 7.1 40 146-185 24-63 (85)
131 PF11932 DUF3450: Protein of u 80.8 38 0.00082 29.6 14.5 43 137-179 54-96 (251)
132 KOG0977 Nuclear envelope prote 80.6 48 0.0011 33.1 13.5 50 155-204 143-192 (546)
133 PF10234 Cluap1: Clusterin-ass 80.3 24 0.00053 32.0 10.6 13 188-200 225-237 (267)
134 PRK13922 rod shape-determining 80.3 6.3 0.00014 34.7 6.8 43 131-177 68-110 (276)
135 PF10805 DUF2730: Protein of u 80.2 23 0.00051 27.4 9.2 45 138-182 48-94 (106)
136 PRK10803 tol-pal system protei 80.1 14 0.00031 32.9 9.0 48 133-180 55-102 (263)
137 PF05667 DUF812: Protein of un 79.9 24 0.00051 35.4 11.3 61 129-189 325-385 (594)
138 PF02183 HALZ: Homeobox associ 79.6 9.6 0.00021 25.5 5.9 38 137-174 3-40 (45)
139 PF12777 MT: Microtubule-bindi 79.6 14 0.0003 34.0 9.0 63 135-197 231-293 (344)
140 TIGR02231 conserved hypothetic 79.6 43 0.00093 32.3 12.7 21 188-208 152-172 (525)
141 PF04849 HAP1_N: HAP1 N-termin 79.5 29 0.00064 32.2 11.0 11 193-203 274-284 (306)
142 PF05103 DivIVA: DivIVA protei 79.5 1.1 2.4E-05 34.8 1.6 48 132-179 25-72 (131)
143 PF04102 SlyX: SlyX; InterPro 79.4 16 0.00035 26.2 7.5 45 137-181 2-46 (69)
144 PF05483 SCP-1: Synaptonemal c 79.3 29 0.00062 35.7 11.6 63 140-202 588-650 (786)
145 KOG4403 Cell surface glycoprot 79.2 21 0.00044 35.1 10.1 75 130-204 240-318 (575)
146 KOG4001 Axonemal dynein light 79.0 41 0.00088 30.0 11.2 74 121-207 170-247 (259)
147 KOG4360 Uncharacterized coiled 78.7 41 0.00089 33.6 12.2 46 135-180 222-267 (596)
148 PF01166 TSC22: TSC-22/dip/bun 78.6 4.2 9.1E-05 29.1 4.1 28 148-175 16-43 (59)
149 PF08606 Prp19: Prp19/Pso4-lik 78.6 24 0.00051 26.1 8.1 55 152-206 7-68 (70)
150 KOG4807 F-actin binding protei 78.5 42 0.00092 32.7 12.0 78 128-205 389-491 (593)
151 PF10473 CENP-F_leu_zip: Leuci 78.4 37 0.00079 28.0 15.2 11 133-143 25-35 (140)
152 PF04977 DivIC: Septum formati 78.3 9.7 0.00021 26.8 6.1 30 150-179 21-50 (80)
153 PF12709 Kinetocho_Slk19: Cent 78.2 13 0.00028 28.5 7.0 47 133-179 28-75 (87)
154 KOG0161 Myosin class II heavy 77.5 42 0.00091 38.2 13.2 67 116-182 1644-1710(1930)
155 KOG1962 B-cell receptor-associ 77.5 51 0.0011 29.2 12.1 14 190-203 195-208 (216)
156 KOG1962 B-cell receptor-associ 77.3 10 0.00022 33.5 7.0 9 168-176 180-188 (216)
157 PF15294 Leu_zip: Leucine zipp 77.2 14 0.00031 33.7 8.2 50 156-205 128-177 (278)
158 KOG3119 Basic region leucine z 77.0 23 0.00051 31.8 9.5 51 131-181 193-243 (269)
159 PF12808 Mto2_bdg: Micro-tubul 77.0 8.8 0.00019 26.7 5.2 44 130-180 2-49 (52)
160 KOG1029 Endocytic adaptor prot 76.9 30 0.00065 36.3 11.0 21 47-67 246-266 (1118)
161 PF09789 DUF2353: Uncharacteri 76.7 43 0.00093 31.2 11.2 63 117-179 35-112 (319)
162 PHA03011 hypothetical protein; 76.6 34 0.00073 27.3 9.0 59 141-206 59-117 (120)
163 PF07716 bZIP_2: Basic region 76.5 9.2 0.0002 25.9 5.3 28 154-181 26-53 (54)
164 KOG4643 Uncharacterized coiled 76.5 60 0.0013 34.9 13.2 60 110-169 372-431 (1195)
165 PRK02793 phi X174 lysis protei 76.5 25 0.00054 25.6 7.9 45 135-179 4-48 (72)
166 PF13805 Pil1: Eisosome compon 76.5 51 0.0011 30.1 11.4 76 117-198 133-212 (271)
167 PRK10698 phage shock protein P 76.4 51 0.0011 28.7 14.0 81 124-204 88-182 (222)
168 KOG1899 LAR transmembrane tyro 76.4 44 0.00095 34.3 11.8 82 117-200 130-217 (861)
169 PF04728 LPP: Lipoprotein leuc 76.3 24 0.00053 24.9 8.5 35 134-168 5-39 (56)
170 PRK04325 hypothetical protein; 76.3 24 0.00053 25.8 7.8 46 134-179 4-49 (74)
171 PF08581 Tup_N: Tup N-terminal 76.2 30 0.00065 25.8 12.0 70 133-206 5-75 (79)
172 KOG0161 Myosin class II heavy 76.2 34 0.00074 38.9 12.1 72 133-204 1612-1683(1930)
173 PF13094 CENP-Q: CENP-Q, a CEN 76.2 39 0.00085 27.5 9.9 37 152-188 40-76 (160)
174 PF10805 DUF2730: Protein of u 76.0 34 0.00074 26.5 9.9 54 130-183 33-88 (106)
175 PRK14127 cell division protein 76.0 25 0.00054 27.9 8.3 30 132-161 30-59 (109)
176 PF12329 TMF_DNA_bd: TATA elem 75.9 28 0.00061 25.4 10.8 59 139-204 12-70 (74)
177 PF03962 Mnd1: Mnd1 family; I 75.9 49 0.0011 28.2 13.4 18 189-206 136-153 (188)
178 KOG4360 Uncharacterized coiled 75.9 33 0.00071 34.2 10.6 72 128-199 194-265 (596)
179 KOG2010 Double stranded RNA bi 75.6 17 0.00036 34.4 8.2 36 141-176 149-184 (405)
180 PF09744 Jnk-SapK_ap_N: JNK_SA 75.3 48 0.001 27.8 13.4 39 142-180 85-123 (158)
181 PF05266 DUF724: Protein of un 75.3 52 0.0011 28.2 12.7 44 139-182 131-174 (190)
182 PF05667 DUF812: Protein of un 75.1 44 0.00095 33.6 11.6 46 132-177 335-380 (594)
183 PF14988 DUF4515: Domain of un 75.1 55 0.0012 28.4 11.9 32 154-185 48-79 (206)
184 PF12711 Kinesin-relat_1: Kine 75.1 15 0.00032 28.1 6.5 52 152-204 16-67 (86)
185 PF07798 DUF1640: Protein of u 74.6 36 0.00079 28.3 9.5 45 136-180 48-93 (177)
186 COG4467 Regulator of replicati 74.4 20 0.00043 28.7 7.3 44 137-180 6-49 (114)
187 KOG1265 Phospholipase C [Lipid 74.3 1.3E+02 0.0028 32.3 16.1 74 109-182 1026-1104(1189)
188 COG1196 Smc Chromosome segrega 74.2 1.3E+02 0.0028 32.3 15.5 9 26-34 595-603 (1163)
189 PF05557 MAD: Mitotic checkpoi 74.1 41 0.00088 34.0 11.3 23 186-208 564-586 (722)
190 PRK00295 hypothetical protein; 74.1 29 0.00063 25.0 7.6 43 137-179 3-45 (68)
191 smart00787 Spc7 Spc7 kinetocho 74.0 74 0.0016 29.3 12.2 37 139-175 151-187 (312)
192 PF10211 Ax_dynein_light: Axon 73.8 55 0.0012 27.8 12.1 59 149-207 123-182 (189)
193 PRK00846 hypothetical protein; 73.5 31 0.00068 25.7 7.8 46 135-180 9-54 (77)
194 KOG4196 bZIP transcription fac 73.5 18 0.0004 29.8 7.1 18 164-181 78-95 (135)
195 KOG0999 Microtubule-associated 73.1 45 0.00097 33.8 10.9 70 138-207 7-76 (772)
196 KOG0250 DNA repair protein RAD 72.9 88 0.0019 33.7 13.5 83 122-204 679-771 (1074)
197 KOG4571 Activating transcripti 72.9 12 0.00027 34.4 6.6 42 153-194 248-290 (294)
198 PRK13729 conjugal transfer pil 72.8 20 0.00044 35.1 8.4 31 149-179 79-109 (475)
199 KOG0933 Structural maintenance 72.7 1E+02 0.0022 33.3 13.7 68 135-202 790-857 (1174)
200 KOG4343 bZIP transcription fac 72.6 27 0.00058 35.1 9.2 67 106-183 273-339 (655)
201 PRK15422 septal ring assembly 72.4 39 0.00086 25.5 10.0 39 137-175 23-61 (79)
202 PF09304 Cortex-I_coil: Cortex 71.9 49 0.0011 26.3 11.9 23 137-159 42-64 (107)
203 PF04999 FtsL: Cell division p 71.8 26 0.00057 26.0 7.3 44 144-187 33-76 (97)
204 KOG0288 WD40 repeat protein Ti 71.7 1E+02 0.0022 30.0 13.9 29 131-159 47-75 (459)
205 PF06428 Sec2p: GDP/GTP exchan 71.3 4.5 9.8E-05 31.5 3.0 70 135-206 11-83 (100)
206 KOG4674 Uncharacterized conser 71.3 25 0.00053 39.7 9.5 61 140-200 1258-1319(1822)
207 cd07666 BAR_SNX7 The Bin/Amphi 71.3 76 0.0017 28.3 13.1 79 112-200 150-230 (243)
208 KOG0976 Rho/Rac1-interacting s 71.2 60 0.0013 34.4 11.5 36 146-181 99-134 (1265)
209 KOG0804 Cytoplasmic Zn-finger 71.2 87 0.0019 30.8 12.1 37 131-167 353-389 (493)
210 COG2900 SlyX Uncharacterized p 71.0 34 0.00074 25.4 7.4 48 133-180 9-56 (72)
211 TIGR02977 phageshock_pspA phag 70.6 69 0.0015 27.5 13.6 58 131-188 98-155 (219)
212 KOG0980 Actin-binding protein 70.4 1.5E+02 0.0033 31.5 14.9 66 111-176 389-454 (980)
213 PF08172 CASP_C: CASP C termin 70.4 80 0.0017 28.2 11.1 33 170-202 89-121 (248)
214 KOG4603 TBP-1 interacting prot 70.1 44 0.00096 29.0 8.9 26 134-159 88-113 (201)
215 PF10212 TTKRSYEDQ: Predicted 70.1 66 0.0014 32.0 11.3 67 115-183 412-478 (518)
216 PF15058 Speriolin_N: Sperioli 70.0 13 0.00027 32.5 5.7 33 135-175 8-40 (200)
217 PF08232 Striatin: Striatin fa 69.5 55 0.0012 26.4 9.1 48 136-183 15-62 (134)
218 PF15030 DUF4527: Protein of u 69.3 91 0.002 28.4 13.2 97 109-205 13-110 (277)
219 KOG1414 Transcriptional activa 69.0 1.1 2.3E-05 42.4 -1.1 53 107-159 281-334 (395)
220 PF05812 Herpes_BLRF2: Herpesv 69.0 8.3 0.00018 31.1 4.1 27 131-157 2-28 (118)
221 PRK00888 ftsB cell division pr 69.0 26 0.00057 27.2 6.9 30 130-159 32-61 (105)
222 PF03980 Nnf1: Nnf1 ; InterPr 68.9 9.1 0.0002 29.3 4.3 30 130-159 78-107 (109)
223 PF10174 Cast: RIM-binding pro 68.8 1.3E+02 0.0028 31.3 13.5 58 142-199 318-375 (775)
224 PF06216 RTBV_P46: Rice tungro 68.7 33 0.00071 31.6 8.3 48 132-179 64-111 (389)
225 PHA02562 46 endonuclease subun 68.7 1.1E+02 0.0024 29.2 15.9 11 110-120 298-308 (562)
226 KOG0612 Rho-associated, coiled 68.6 1.9E+02 0.0041 31.9 17.7 36 146-181 494-529 (1317)
227 PF15254 CCDC14: Coiled-coil d 68.6 31 0.00068 35.9 9.0 57 144-200 392-467 (861)
228 KOG0996 Structural maintenance 68.5 1.7E+02 0.0037 32.2 14.4 71 109-182 779-849 (1293)
229 PF14282 FlxA: FlxA-like prote 68.5 38 0.00081 26.2 7.7 47 134-180 21-71 (106)
230 PF14915 CCDC144C: CCDC144C pr 68.4 86 0.0019 29.2 11.0 56 125-180 21-83 (305)
231 PF09728 Taxilin: Myosin-like 68.2 98 0.0021 28.4 13.9 81 111-191 50-159 (309)
232 PF15619 Lebercilin: Ciliary p 67.7 80 0.0017 27.2 10.8 17 188-204 171-187 (194)
233 PHA03155 hypothetical protein; 67.6 7.6 0.00016 31.2 3.6 24 134-157 10-33 (115)
234 PF07558 Shugoshin_N: Shugoshi 67.5 6.9 0.00015 26.3 2.9 35 142-176 10-44 (46)
235 PRK02224 chromosome segregatio 67.1 1.5E+02 0.0033 30.2 14.4 23 134-156 511-533 (880)
236 COG1340 Uncharacterized archae 67.0 1.1E+02 0.0023 28.4 12.4 100 109-208 24-129 (294)
237 COG1792 MreC Cell shape-determ 66.8 47 0.001 30.0 9.0 37 164-204 70-106 (284)
238 PHA03011 hypothetical protein; 66.7 51 0.0011 26.3 8.0 8 137-144 69-76 (120)
239 COG3879 Uncharacterized protei 66.6 61 0.0013 29.2 9.5 78 119-208 32-109 (247)
240 PRK00736 hypothetical protein; 66.6 45 0.00098 23.9 7.6 43 137-179 3-45 (68)
241 PRK10803 tol-pal system protei 66.5 69 0.0015 28.5 9.9 47 135-181 43-89 (263)
242 PF10168 Nup88: Nuclear pore c 66.5 1.5E+02 0.0033 30.5 13.4 45 135-179 561-605 (717)
243 PF04642 DUF601: Protein of un 65.5 25 0.00054 32.2 6.9 59 133-191 218-285 (311)
244 PF15058 Speriolin_N: Sperioli 65.3 13 0.00028 32.5 4.9 41 157-197 9-49 (200)
245 PF00769 ERM: Ezrin/radixin/mo 65.2 99 0.0022 27.3 12.6 80 122-201 23-116 (246)
246 PF14988 DUF4515: Domain of un 64.8 94 0.002 26.9 11.5 48 155-202 151-198 (206)
247 PF10146 zf-C4H2: Zinc finger- 64.5 1E+02 0.0022 27.3 13.0 37 146-182 32-68 (230)
248 PF10498 IFT57: Intra-flagella 64.3 1.3E+02 0.0028 28.4 13.7 92 113-207 243-354 (359)
249 PHA03162 hypothetical protein; 64.2 4.8 0.0001 33.1 1.9 26 130-155 11-36 (135)
250 COG4372 Uncharacterized protei 64.1 1.5E+02 0.0032 29.0 15.3 88 119-206 131-228 (499)
251 smart00340 HALZ homeobox assoc 63.9 17 0.00036 24.5 4.1 27 155-181 7-33 (44)
252 PF09730 BicD: Microtubule-ass 63.7 1.3E+02 0.0029 31.0 12.4 31 134-164 36-66 (717)
253 KOG0982 Centrosomal protein Nu 63.4 44 0.00095 32.7 8.4 23 188-210 311-333 (502)
254 KOG0972 Huntingtin interacting 63.1 1.1E+02 0.0023 28.9 10.6 65 143-207 263-327 (384)
255 PF07200 Mod_r: Modifier of ru 63.0 70 0.0015 25.5 8.5 75 131-206 20-94 (150)
256 PF10205 KLRAQ: Predicted coil 62.4 75 0.0016 25.0 11.4 38 144-181 31-68 (102)
257 TIGR03319 YmdA_YtgF conserved 62.3 1.6E+02 0.0036 28.9 12.9 90 111-200 72-168 (514)
258 KOG2991 Splicing regulator [RN 62.2 66 0.0014 29.7 8.9 72 137-208 215-305 (330)
259 PF01166 TSC22: TSC-22/dip/bun 62.2 16 0.00034 26.2 4.0 21 133-153 22-42 (59)
260 PF05700 BCAS2: Breast carcino 61.6 60 0.0013 28.1 8.4 24 7-30 8-32 (221)
261 PF08647 BRE1: BRE1 E3 ubiquit 61.5 69 0.0015 24.3 13.9 75 113-187 5-80 (96)
262 TIGR00606 rad50 rad50. This fa 61.4 2.5E+02 0.0053 30.6 14.7 16 122-137 847-862 (1311)
263 KOG1103 Predicted coiled-coil 61.4 54 0.0012 31.6 8.6 62 121-182 227-288 (561)
264 PF04871 Uso1_p115_C: Uso1 / p 61.2 87 0.0019 25.4 11.1 23 133-155 28-50 (136)
265 PF05529 Bap31: B-cell recepto 61.2 96 0.0021 25.9 10.0 36 167-202 154-189 (192)
266 PF07412 Geminin: Geminin; In 60.9 58 0.0013 28.5 8.1 29 146-174 125-153 (200)
267 PF04977 DivIC: Septum formati 60.7 43 0.00092 23.4 6.2 27 132-158 24-50 (80)
268 PF14645 Chibby: Chibby family 60.4 38 0.00082 26.9 6.4 23 137-159 76-98 (116)
269 PF02403 Seryl_tRNA_N: Seryl-t 60.4 71 0.0015 24.0 8.1 19 163-181 70-88 (108)
270 PF09738 DUF2051: Double stran 60.2 1.4E+02 0.0031 27.5 11.6 16 133-148 85-100 (302)
271 PRK05431 seryl-tRNA synthetase 60.2 1.6E+02 0.0035 28.1 11.9 85 109-193 10-100 (425)
272 COG2919 Septum formation initi 60.2 82 0.0018 24.7 9.1 66 111-182 21-86 (117)
273 PF07407 Seadorna_VP6: Seadorn 60.2 60 0.0013 30.9 8.5 24 142-165 35-58 (420)
274 KOG0996 Structural maintenance 59.9 1.8E+02 0.004 31.9 12.8 51 132-182 412-462 (1293)
275 PF15290 Syntaphilin: Golgi-lo 59.8 1.4E+02 0.0031 27.6 10.7 47 136-182 79-139 (305)
276 KOG2129 Uncharacterized conser 59.6 31 0.00067 33.8 6.7 41 135-175 46-86 (552)
277 PF00038 Filament: Intermediat 59.4 1.3E+02 0.0028 26.7 15.7 64 141-204 211-278 (312)
278 PF04899 MbeD_MobD: MbeD/MobD 59.3 68 0.0015 23.5 10.1 39 145-183 20-58 (70)
279 KOG0804 Cytoplasmic Zn-finger 59.2 1.7E+02 0.0036 28.9 11.6 36 138-173 374-409 (493)
280 COG4942 Membrane-bound metallo 58.8 1.8E+02 0.0039 28.2 13.6 66 118-183 38-103 (420)
281 PF04340 DUF484: Protein of un 58.8 59 0.0013 27.9 7.8 47 133-183 41-87 (225)
282 PF01486 K-box: K-box region; 58.7 48 0.001 25.0 6.5 7 167-173 89-95 (100)
283 KOG0946 ER-Golgi vesicle-tethe 58.6 1.8E+02 0.004 30.8 12.3 62 116-177 655-716 (970)
284 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.2 92 0.002 24.7 10.2 66 114-179 66-131 (132)
285 PF01920 Prefoldin_2: Prefoldi 58.1 38 0.00083 24.9 5.8 37 131-167 61-97 (106)
286 COG1792 MreC Cell shape-determ 57.9 38 0.00082 30.7 6.8 44 130-177 64-107 (284)
287 PF02841 GBP_C: Guanylate-bind 57.8 1.4E+02 0.0031 26.7 14.9 72 127-201 217-297 (297)
288 KOG2077 JNK/SAPK-associated pr 57.7 45 0.00098 34.0 7.6 52 135-186 325-376 (832)
289 PF15254 CCDC14: Coiled-coil d 57.4 1.8E+02 0.0039 30.6 12.0 34 133-166 442-475 (861)
290 PF05557 MAD: Mitotic checkpoi 57.4 1.8E+02 0.0039 29.4 12.1 48 133-180 511-586 (722)
291 PF12709 Kinetocho_Slk19: Cent 57.4 86 0.0019 24.0 8.5 43 130-172 40-82 (87)
292 PF15066 CAGE1: Cancer-associa 57.4 1.1E+02 0.0024 30.3 10.1 70 137-206 343-429 (527)
293 PF05529 Bap31: B-cell recepto 57.3 1.1E+02 0.0025 25.4 9.4 7 169-175 177-183 (192)
294 PRK04778 septation ring format 56.9 1.8E+02 0.0039 28.7 11.7 29 133-161 311-339 (569)
295 PF05812 Herpes_BLRF2: Herpesv 56.9 19 0.0004 29.1 4.1 26 155-180 5-30 (118)
296 KOG0243 Kinesin-like protein [ 56.9 2.4E+02 0.0052 30.5 13.1 54 129-182 445-498 (1041)
297 PF06632 XRCC4: DNA double-str 56.9 1.7E+02 0.0038 27.4 11.6 27 136-162 141-167 (342)
298 PF08537 NBP1: Fungal Nap bind 56.7 1.6E+02 0.0035 27.6 10.7 74 109-182 120-204 (323)
299 KOG0288 WD40 repeat protein Ti 56.5 2E+02 0.0044 28.1 13.5 35 141-175 36-70 (459)
300 PF15070 GOLGA2L5: Putative go 56.4 1.7E+02 0.0037 29.6 11.6 56 131-186 166-221 (617)
301 PF02403 Seryl_tRNA_N: Seryl-t 55.8 86 0.0019 23.6 11.8 82 118-199 9-99 (108)
302 KOG2077 JNK/SAPK-associated pr 55.7 1.1E+02 0.0024 31.3 9.9 69 136-204 298-373 (832)
303 PF07889 DUF1664: Protein of u 55.4 1.1E+02 0.0024 24.8 9.7 13 167-179 61-73 (126)
304 KOG1853 LIS1-interacting prote 55.4 1.7E+02 0.0038 27.0 14.1 44 116-159 29-72 (333)
305 PF04012 PspA_IM30: PspA/IM30 55.2 1.3E+02 0.0028 25.4 13.5 54 134-187 100-153 (221)
306 COG1382 GimC Prefoldin, chaper 55.0 72 0.0016 25.7 7.2 27 171-197 81-107 (119)
307 TIGR02132 phaR_Bmeg polyhydrox 54.9 1.4E+02 0.0031 25.9 10.0 51 133-183 80-130 (189)
308 PF12128 DUF3584: Protein of u 54.9 3.1E+02 0.0067 29.7 14.9 59 123-181 612-670 (1201)
309 PF06785 UPF0242: Uncharacteri 54.8 1.6E+02 0.0034 28.2 10.3 57 140-196 100-170 (401)
310 PRK00409 recombination and DNA 54.7 1.7E+02 0.0036 30.3 11.5 10 38-47 413-422 (782)
311 KOG2391 Vacuolar sorting prote 54.6 1.7E+02 0.0037 27.8 10.5 59 120-183 211-269 (365)
312 KOG3647 Predicted coiled-coil 54.5 1.8E+02 0.004 27.0 10.9 43 158-200 138-180 (338)
313 TIGR01069 mutS2 MutS2 family p 54.4 2.7E+02 0.0058 28.8 13.5 9 38-46 408-416 (771)
314 PF06810 Phage_GP20: Phage min 54.1 1.3E+02 0.0027 25.0 10.0 14 168-181 52-65 (155)
315 TIGR02209 ftsL_broad cell divi 53.7 65 0.0014 23.0 6.3 30 130-159 29-58 (85)
316 PF13093 FTA4: Kinetochore com 53.7 55 0.0012 28.6 6.8 21 188-208 191-211 (213)
317 PF10174 Cast: RIM-binding pro 53.4 2.4E+02 0.0051 29.5 12.3 40 162-201 366-405 (775)
318 KOG0964 Structural maintenance 53.2 3.3E+02 0.0072 29.6 14.5 85 120-204 406-497 (1200)
319 PHA03162 hypothetical protein; 52.7 19 0.00041 29.7 3.6 22 155-176 15-36 (135)
320 PF05791 Bacillus_HBL: Bacillu 52.5 1.4E+02 0.0031 25.1 10.5 76 124-202 102-177 (184)
321 KOG0978 E3 ubiquitin ligase in 52.5 1.2E+02 0.0026 31.2 9.9 81 122-203 563-643 (698)
322 KOG2991 Splicing regulator [RN 52.5 1.9E+02 0.0041 26.8 10.1 72 134-205 238-309 (330)
323 PHA03155 hypothetical protein; 52.3 20 0.00044 28.8 3.6 24 155-178 10-33 (115)
324 PF05300 DUF737: Protein of un 52.2 65 0.0014 27.8 6.9 47 116-162 118-164 (187)
325 PF09763 Sec3_C: Exocyst compl 52.1 2.6E+02 0.0057 28.1 13.7 71 131-201 22-95 (701)
326 KOG0709 CREB/ATF family transc 52.1 50 0.0011 32.4 6.9 67 125-208 254-320 (472)
327 PF04859 DUF641: Plant protein 52.0 59 0.0013 26.5 6.4 40 136-175 91-130 (131)
328 PF09789 DUF2353: Uncharacteri 51.8 2.1E+02 0.0045 26.8 11.2 64 121-184 19-103 (319)
329 TIGR02680 conserved hypothetic 51.8 3.7E+02 0.008 29.7 15.3 45 135-179 279-323 (1353)
330 PF06419 COG6: Conserved oligo 51.8 2.6E+02 0.0057 28.0 12.8 60 131-190 44-103 (618)
331 KOG4797 Transcriptional regula 51.7 39 0.00085 27.2 5.1 23 152-174 73-95 (123)
332 PF10779 XhlA: Haemolysin XhlA 51.6 86 0.0019 22.4 7.8 49 135-183 2-50 (71)
333 PF09311 Rab5-bind: Rabaptin-l 51.2 9.3 0.0002 32.2 1.6 10 193-202 62-71 (181)
334 PF13874 Nup54: Nucleoporin co 51.0 1.3E+02 0.0028 24.2 8.7 40 133-179 52-91 (141)
335 KOG3335 Predicted coiled-coil 51.0 25 0.00054 30.3 4.2 45 109-159 89-133 (181)
336 KOG2264 Exostosin EXT1L [Signa 50.9 1.5E+02 0.0033 30.4 10.0 46 132-177 93-138 (907)
337 KOG3433 Protein involved in me 50.7 1.7E+02 0.0038 25.6 10.1 51 130-180 79-129 (203)
338 PF03962 Mnd1: Mnd1 family; I 50.6 1.6E+02 0.0034 25.1 9.3 17 161-177 111-127 (188)
339 PF07851 TMPIT: TMPIT-like pro 50.3 2.2E+02 0.0048 26.7 12.2 73 132-204 4-84 (330)
340 KOG2391 Vacuolar sorting prote 50.2 2.3E+02 0.0051 27.0 14.4 39 137-175 237-275 (365)
341 TIGR00634 recN DNA repair prot 49.8 57 0.0012 31.9 7.0 85 106-190 139-232 (563)
342 PF12128 DUF3584: Protein of u 49.8 3.7E+02 0.008 29.1 14.2 45 135-179 631-675 (1201)
343 PRK14872 rod shape-determining 49.7 53 0.0011 30.8 6.5 24 160-183 57-80 (337)
344 PF13874 Nup54: Nucleoporin co 49.7 1.4E+02 0.0029 24.1 9.4 30 153-182 93-122 (141)
345 KOG0995 Centromere-associated 49.7 1.9E+02 0.0042 29.2 10.6 17 187-203 307-323 (581)
346 KOG4603 TBP-1 interacting prot 49.5 1.8E+02 0.0039 25.4 9.6 16 161-176 124-139 (201)
347 PF04871 Uso1_p115_C: Uso1 / p 49.2 1.4E+02 0.0031 24.1 10.1 43 133-175 35-77 (136)
348 COG5185 HEC1 Protein involved 49.0 1.3E+02 0.0027 30.1 9.0 40 132-171 487-526 (622)
349 PF07407 Seadorna_VP6: Seadorn 49.0 27 0.00058 33.2 4.3 31 153-183 32-62 (420)
350 PF04340 DUF484: Protein of un 48.7 1.5E+02 0.0031 25.4 8.7 32 154-185 41-72 (225)
351 PRK04863 mukB cell division pr 48.7 4.4E+02 0.0095 29.7 15.7 50 131-180 375-424 (1486)
352 PF11365 DUF3166: Protein of u 48.6 84 0.0018 24.4 6.4 40 135-174 4-43 (96)
353 PF05622 HOOK: HOOK protein; 48.4 5.9 0.00013 39.9 0.0 52 129-180 322-376 (713)
354 PLN02678 seryl-tRNA synthetase 48.3 2.7E+02 0.0058 27.1 11.5 14 108-121 13-26 (448)
355 TIGR03185 DNA_S_dndD DNA sulfu 48.2 2.9E+02 0.0064 27.5 13.4 42 133-174 210-251 (650)
356 PF09755 DUF2046: Uncharacteri 48.2 2.4E+02 0.0051 26.4 11.4 50 155-204 180-245 (310)
357 PF11500 Cut12: Spindle pole b 48.1 1.7E+02 0.0036 24.6 8.8 52 110-161 83-134 (152)
358 PF12329 TMF_DNA_bd: TATA elem 47.8 1.1E+02 0.0023 22.3 9.9 54 130-183 10-63 (74)
359 COG3352 FlaC Putative archaeal 47.8 1.7E+02 0.0037 24.7 9.3 58 132-209 79-136 (157)
360 PF13935 Ead_Ea22: Ead/Ea22-li 47.7 1.2E+02 0.0025 24.5 7.5 11 130-140 79-89 (139)
361 PF11932 DUF3450: Protein of u 47.7 1.9E+02 0.0041 25.2 15.4 40 134-173 58-97 (251)
362 KOG1003 Actin filament-coating 47.5 2E+02 0.0043 25.4 9.2 40 140-179 103-142 (205)
363 PF13815 Dzip-like_N: Iguana/D 47.5 92 0.002 24.3 6.7 31 147-177 81-111 (118)
364 KOG4593 Mitotic checkpoint pro 47.4 3.5E+02 0.0075 28.1 12.9 87 116-207 208-294 (716)
365 TIGR03185 DNA_S_dndD DNA sulfu 47.1 3.1E+02 0.0066 27.4 14.0 44 133-176 422-465 (650)
366 cd07596 BAR_SNX The Bin/Amphip 47.0 1.6E+02 0.0034 24.0 14.7 62 140-204 146-209 (218)
367 PF04728 LPP: Lipoprotein leuc 47.0 1E+02 0.0022 21.8 6.9 31 140-177 4-34 (56)
368 PF15397 DUF4618: Domain of un 46.9 2.2E+02 0.0049 25.8 13.8 57 123-179 72-132 (258)
369 PF02388 FemAB: FemAB family; 46.4 1.6E+02 0.0035 27.7 9.2 22 133-154 243-264 (406)
370 PF05600 DUF773: Protein of un 46.2 2.6E+02 0.0057 27.5 10.9 76 108-183 397-483 (507)
371 KOG4673 Transcription factor T 46.2 2.5E+02 0.0054 29.5 10.9 77 131-207 858-951 (961)
372 PF10168 Nup88: Nuclear pore c 46.1 3.5E+02 0.0077 27.9 12.5 48 156-204 596-648 (717)
373 KOG2264 Exostosin EXT1L [Signa 45.7 1E+02 0.0023 31.5 8.0 47 158-204 98-144 (907)
374 PTZ00454 26S protease regulato 45.2 80 0.0017 29.9 7.0 22 137-158 27-48 (398)
375 cd00632 Prefoldin_beta Prefold 45.0 1E+02 0.0022 23.4 6.4 25 135-159 66-90 (105)
376 PRK11239 hypothetical protein; 44.9 41 0.00088 29.8 4.6 27 135-161 186-212 (215)
377 PRK03992 proteasome-activating 44.8 83 0.0018 29.3 7.0 26 137-162 13-38 (389)
378 PRK14160 heat shock protein Gr 44.8 2.2E+02 0.0047 25.0 10.0 47 133-179 55-101 (211)
379 PRK10963 hypothetical protein; 44.7 90 0.002 27.0 6.8 45 135-183 40-84 (223)
380 TIGR00606 rad50 rad50. This fa 44.7 4.5E+02 0.0098 28.7 15.2 44 135-178 884-927 (1311)
381 KOG0976 Rho/Rac1-interacting s 44.5 2.4E+02 0.0053 30.2 10.6 49 133-181 107-155 (1265)
382 PF14645 Chibby: Chibby family 44.4 1.1E+02 0.0023 24.4 6.6 23 136-158 82-104 (116)
383 PLN02939 transferase, transfer 44.0 3.9E+02 0.0084 28.8 12.3 25 158-182 224-248 (977)
384 PF07558 Shugoshin_N: Shugoshi 43.9 26 0.00056 23.5 2.6 40 115-155 5-44 (46)
385 TIGR03007 pepcterm_ChnLen poly 43.8 2.9E+02 0.0063 26.2 14.5 70 134-203 312-384 (498)
386 PF06698 DUF1192: Protein of u 43.8 95 0.0021 22.1 5.6 25 134-158 23-47 (59)
387 KOG0018 Structural maintenance 43.6 4.7E+02 0.01 28.6 12.9 87 118-204 388-478 (1141)
388 KOG0980 Actin-binding protein 43.4 4E+02 0.0087 28.6 12.0 41 142-182 413-453 (980)
389 KOG2751 Beclin-like protein [S 43.3 2.2E+02 0.0047 27.9 9.5 59 123-181 155-218 (447)
390 PTZ00454 26S protease regulato 42.6 1.1E+02 0.0024 28.9 7.5 16 144-159 27-42 (398)
391 TIGR00998 8a0101 efflux pump m 42.4 2.4E+02 0.0052 24.9 10.1 25 135-159 97-121 (334)
392 PF10359 Fmp27_WPPW: RNA pol I 42.3 1.4E+02 0.003 28.8 8.3 33 170-202 196-228 (475)
393 KOG2010 Double stranded RNA bi 42.0 1.2E+02 0.0025 29.0 7.3 29 133-161 120-148 (405)
394 PF07111 HCR: Alpha helical co 42.0 3.2E+02 0.007 28.4 10.9 70 131-200 161-230 (739)
395 PHA02557 22 prohead core prote 41.9 2E+02 0.0043 26.4 8.7 44 147-190 142-185 (271)
396 PRK10963 hypothetical protein; 41.9 1.1E+02 0.0024 26.4 7.0 31 154-184 38-68 (223)
397 PF05701 WEMBL: Weak chloropla 41.7 3.5E+02 0.0075 26.5 11.9 10 191-200 340-349 (522)
398 PF09325 Vps5: Vps5 C terminal 41.7 2.1E+02 0.0045 23.9 13.5 82 119-203 136-226 (236)
399 COG3883 Uncharacterized protei 41.3 2.8E+02 0.0061 25.3 11.5 46 136-181 49-94 (265)
400 KOG1029 Endocytic adaptor prot 41.2 3.7E+02 0.0079 28.8 11.2 32 150-181 420-451 (1118)
401 PRK14154 heat shock protein Gr 40.3 2.6E+02 0.0055 24.6 9.1 22 135-156 69-90 (208)
402 PRK13182 racA polar chromosome 40.3 1.9E+02 0.0042 24.5 7.9 24 135-158 95-118 (175)
403 PRK03992 proteasome-activating 40.1 1.3E+02 0.0029 28.0 7.6 42 135-176 4-45 (389)
404 PF05377 FlaC_arch: Flagella a 39.5 1.3E+02 0.0029 21.1 7.3 25 135-159 3-27 (55)
405 COG4477 EzrA Negative regulato 39.4 2.6E+02 0.0056 28.2 9.6 18 189-206 324-341 (570)
406 PF06818 Fez1: Fez1; InterPro 39.2 2.7E+02 0.0058 24.5 10.7 14 193-206 92-105 (202)
407 PF13118 DUF3972: Protein of u 39.1 1.6E+02 0.0035 24.0 6.9 40 137-176 83-122 (126)
408 PRK10722 hypothetical protein; 39.0 1.9E+02 0.0042 26.2 8.0 54 111-166 144-203 (247)
409 TIGR03495 phage_LysB phage lys 39.0 2.2E+02 0.0047 23.4 10.2 38 146-183 19-56 (135)
410 KOG0963 Transcription factor/C 39.0 2.7E+02 0.0058 28.5 9.8 65 131-203 295-359 (629)
411 COG1842 PspA Phage shock prote 38.9 2.7E+02 0.0059 24.5 12.4 10 131-140 65-74 (225)
412 KOG1899 LAR transmembrane tyro 38.7 2.8E+02 0.006 28.9 9.8 37 126-162 161-197 (861)
413 PF07989 Microtub_assoc: Micro 38.7 1.6E+02 0.0034 21.6 7.7 21 162-182 9-29 (75)
414 KOG1853 LIS1-interacting prote 38.5 3.3E+02 0.0071 25.3 12.6 54 117-170 76-129 (333)
415 COG3879 Uncharacterized protei 38.5 1.5E+02 0.0033 26.8 7.3 41 137-180 62-102 (247)
416 KOG1850 Myosin-like coiled-coi 38.4 3E+02 0.0065 26.2 9.4 56 143-198 113-168 (391)
417 KOG0933 Structural maintenance 38.3 5.7E+02 0.012 28.0 14.8 45 135-179 818-862 (1174)
418 KOG3156 Uncharacterized membra 38.2 2.9E+02 0.0063 24.6 9.6 39 166-204 100-139 (220)
419 PF02994 Transposase_22: L1 tr 38.2 1.4E+02 0.0029 28.1 7.3 44 137-180 142-185 (370)
420 PF11180 DUF2968: Protein of u 38.1 2.7E+02 0.0059 24.3 12.8 68 137-204 117-184 (192)
421 PRK13923 putative spore coat p 38.0 1.1E+02 0.0023 26.2 6.0 36 131-166 110-145 (170)
422 PF12999 PRKCSH-like: Glucosid 37.9 2.3E+02 0.0049 24.3 8.0 33 127-159 141-173 (176)
423 TIGR03545 conserved hypothetic 37.6 3.7E+02 0.008 26.8 10.6 75 131-205 190-272 (555)
424 PF05386 TEP1_N: TEP1 N-termin 37.6 9.8 0.00021 23.7 -0.2 17 16-32 1-17 (30)
425 PRK10636 putative ABC transpor 37.5 4.2E+02 0.009 26.4 11.0 25 133-157 564-588 (638)
426 PRK00106 hypothetical protein; 37.4 4.3E+02 0.0094 26.4 15.5 20 124-143 64-83 (535)
427 PF13870 DUF4201: Domain of un 37.0 2.4E+02 0.0051 23.2 12.4 11 191-201 155-165 (177)
428 PF08826 DMPK_coil: DMPK coile 37.0 1.5E+02 0.0033 21.1 10.1 31 144-174 23-53 (61)
429 PF13851 GAS: Growth-arrest sp 37.0 2.7E+02 0.0058 23.9 15.3 31 152-182 92-122 (201)
430 TIGR00414 serS seryl-tRNA synt 36.9 2.4E+02 0.0052 26.8 8.9 62 136-197 41-106 (418)
431 PF12777 MT: Microtubule-bindi 36.6 2.1E+02 0.0045 26.3 8.2 68 107-179 215-282 (344)
432 PRK14011 prefoldin subunit alp 36.5 2.4E+02 0.0052 23.2 7.7 10 172-181 125-134 (144)
433 PF06818 Fez1: Fez1; InterPro 36.2 3E+02 0.0065 24.2 10.4 66 134-199 12-77 (202)
434 PF08738 Gon7: Gon7 family; I 36.2 80 0.0017 24.8 4.6 27 132-158 54-81 (103)
435 PF07246 Phlebovirus_NSM: Phle 36.2 3.3E+02 0.0071 24.9 9.1 34 168-201 203-236 (264)
436 COG1579 Zn-ribbon protein, pos 36.0 3.2E+02 0.007 24.5 12.5 50 133-182 90-139 (239)
437 PF08912 Rho_Binding: Rho Bind 36.0 1.8E+02 0.0038 21.4 6.9 33 137-169 1-33 (69)
438 cd07429 Cby_like Chibby, a nuc 36.0 92 0.002 24.7 5.0 20 140-159 80-99 (108)
439 PF09325 Vps5: Vps5 C terminal 35.7 2.6E+02 0.0057 23.3 11.9 76 123-201 126-201 (236)
440 PF09787 Golgin_A5: Golgin sub 35.6 3.7E+02 0.0079 26.2 10.1 46 113-158 195-240 (511)
441 PF14932 HAUS-augmin3: HAUS au 35.5 3.1E+02 0.0068 24.2 12.2 43 132-174 68-110 (256)
442 KOG4370 Ral-GTPase effector RL 35.2 1.7E+02 0.0037 28.8 7.5 26 151-176 411-436 (514)
443 PF03980 Nnf1: Nnf1 ; InterPr 35.1 79 0.0017 24.0 4.4 23 158-180 85-107 (109)
444 KOG4807 F-actin binding protei 34.9 4.6E+02 0.0099 25.9 11.2 13 189-201 447-459 (593)
445 KOG0289 mRNA splicing factor [ 34.8 1.7E+02 0.0037 28.8 7.5 56 152-207 70-132 (506)
446 TIGR03545 conserved hypothetic 34.7 4.8E+02 0.01 26.1 11.1 15 146-160 191-205 (555)
447 PRK09841 cryptic autophosphory 34.7 5.1E+02 0.011 26.3 13.7 55 107-161 236-296 (726)
448 KOG2483 Upstream transcription 34.6 1E+02 0.0023 27.4 5.7 38 129-180 102-139 (232)
449 PF13870 DUF4201: Domain of un 34.2 2.6E+02 0.0057 22.9 12.0 9 168-176 92-100 (177)
450 KOG3595 Dyneins, heavy chain [ 34.1 4.6E+02 0.0099 29.1 11.4 59 149-207 958-1016(1395)
451 COG1730 GIM5 Predicted prefold 34.1 2.5E+02 0.0054 23.2 7.5 25 135-159 104-128 (145)
452 PF12761 End3: Actin cytoskele 34.0 3.2E+02 0.007 23.9 14.1 32 170-201 163-194 (195)
453 COG5293 Predicted ATPase [Gene 33.7 5E+02 0.011 26.0 13.6 87 113-200 329-425 (591)
454 cd00890 Prefoldin Prefoldin is 33.5 1.8E+02 0.004 22.0 6.3 43 134-180 1-43 (129)
455 PF04899 MbeD_MobD: MbeD/MobD 33.4 1.9E+02 0.0042 21.1 7.9 6 172-177 54-59 (70)
456 PF11365 DUF3166: Protein of u 33.3 2.2E+02 0.0048 22.1 6.6 28 152-179 14-41 (96)
457 PRK10636 putative ABC transpor 33.2 5E+02 0.011 25.9 11.3 29 135-163 559-587 (638)
458 PF07058 Myosin_HC-like: Myosi 32.9 1.8E+02 0.0039 27.4 7.0 39 141-179 2-40 (351)
459 PRK11147 ABC transporter ATPas 32.8 2E+02 0.0042 28.6 7.8 24 134-157 570-593 (635)
460 KOG4674 Uncharacterized conser 32.7 6.5E+02 0.014 29.1 12.2 62 144-205 1234-1295(1822)
461 PRK11546 zraP zinc resistance 32.6 2.7E+02 0.0058 23.1 7.4 18 162-179 91-108 (143)
462 COG4985 ABC-type phosphate tra 32.6 2E+02 0.0043 26.3 7.0 15 167-181 221-235 (289)
463 PF06810 Phage_GP20: Phage min 32.6 2.9E+02 0.0062 22.8 10.4 34 156-189 54-91 (155)
464 PF11853 DUF3373: Protein of u 32.5 47 0.001 32.8 3.4 24 133-156 32-55 (489)
465 PRK14872 rod shape-determining 32.4 1.5E+02 0.0033 27.8 6.6 21 135-155 60-80 (337)
466 PF08781 DP: Transcription fac 32.4 2.9E+02 0.0063 22.9 7.7 29 116-144 6-34 (142)
467 KOG0239 Kinesin (KAR3 subfamil 32.3 4.8E+02 0.01 26.7 10.6 43 137-179 225-267 (670)
468 KOG4302 Microtubule-associated 32.2 5.1E+02 0.011 26.7 10.6 75 132-206 110-199 (660)
469 COG3264 Small-conductance mech 31.9 3.3E+02 0.0072 28.8 9.4 49 131-179 71-119 (835)
470 COG3132 Uncharacterized protei 31.8 63 0.0014 28.3 3.7 23 136-158 189-211 (215)
471 COG1729 Uncharacterized protei 31.7 1.3E+02 0.0029 27.3 5.9 46 134-180 58-103 (262)
472 KOG0447 Dynamin-like GTP bindi 31.6 3.5E+02 0.0075 28.1 9.2 67 128-200 224-295 (980)
473 KOG0483 Transcription factor H 31.6 93 0.002 27.1 4.8 45 140-184 106-150 (198)
474 PRK14143 heat shock protein Gr 31.5 3.8E+02 0.0082 23.9 10.5 69 136-204 64-134 (238)
475 PF11382 DUF3186: Protein of u 31.5 1.7E+02 0.0036 26.7 6.6 43 155-197 34-76 (308)
476 KOG0249 LAR-interacting protei 31.5 6.5E+02 0.014 26.6 11.6 91 111-201 167-257 (916)
477 KOG2189 Vacuolar H+-ATPase V0 31.4 5.2E+02 0.011 27.3 10.6 68 124-191 48-137 (829)
478 cd07429 Cby_like Chibby, a nuc 31.3 92 0.002 24.7 4.3 26 154-179 73-98 (108)
479 PF10212 TTKRSYEDQ: Predicted 31.2 4.6E+02 0.01 26.2 9.9 60 142-201 416-475 (518)
480 PF04999 FtsL: Cell division p 31.2 96 0.0021 22.9 4.3 26 133-158 43-68 (97)
481 PF07334 IFP_35_N: Interferon- 31.2 1.1E+02 0.0024 22.9 4.4 33 155-187 2-34 (76)
482 PF13805 Pil1: Eisosome compon 31.2 4.2E+02 0.009 24.3 9.9 75 130-207 129-203 (271)
483 PF12999 PRKCSH-like: Glucosid 31.2 2.9E+02 0.0063 23.7 7.6 51 111-161 125-175 (176)
484 KOG4572 Predicted DNA-binding 31.0 5.6E+02 0.012 27.7 10.8 79 132-210 995-1114(1424)
485 PRK05431 seryl-tRNA synthetase 31.0 4.7E+02 0.01 24.9 12.2 88 113-200 4-99 (425)
486 PRK01156 chromosome segregatio 30.5 6.2E+02 0.013 26.0 15.5 97 111-207 622-728 (895)
487 PLN02678 seryl-tRNA synthetase 30.2 3.3E+02 0.0072 26.5 8.7 62 136-197 44-108 (448)
488 PF05335 DUF745: Protein of un 30.2 3.6E+02 0.0078 23.2 12.7 77 130-206 65-162 (188)
489 TIGR03007 pepcterm_ChnLen poly 30.2 4.8E+02 0.01 24.7 11.9 74 134-207 277-374 (498)
490 PF07047 OPA3: Optic atrophy 3 30.2 1.3E+02 0.0027 24.2 5.0 38 124-161 97-134 (134)
491 PF13863 DUF4200: Domain of un 30.0 2.5E+02 0.0055 21.4 8.1 50 110-159 59-108 (126)
492 PF04136 Sec34: Sec34-like fam 30.0 3.1E+02 0.0068 22.5 12.5 80 131-210 6-88 (157)
493 PF07412 Geminin: Geminin; In 29.9 3.8E+02 0.0083 23.5 8.3 59 149-207 106-165 (200)
494 KOG4715 SWI/SNF-related matrix 29.8 2.8E+02 0.006 26.4 7.7 49 152-200 220-272 (410)
495 PF04201 TPD52: Tumour protein 29.7 2E+02 0.0044 24.4 6.3 39 138-176 28-66 (162)
496 KOG4460 Nuclear pore complex, 29.7 6.3E+02 0.014 25.9 10.7 80 131-210 587-677 (741)
497 PF06008 Laminin_I: Laminin Do 29.7 3.8E+02 0.0083 23.4 11.1 70 131-200 44-113 (264)
498 PRK11578 macrolide transporter 29.7 4.3E+02 0.0093 24.0 10.0 77 131-207 98-177 (370)
499 PF08286 Spc24: Spc24 subunit 29.6 19 0.00041 28.2 0.2 43 134-176 1-43 (118)
500 PF05600 DUF773: Protein of un 29.6 3E+02 0.0064 27.1 8.4 51 128-178 442-492 (507)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.47 E-value=4e-13 Score=95.41 Aligned_cols=62 Identities=29% Similarity=0.304 Sum_probs=55.5
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMN 169 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN 169 (211)
.|+|+.+|+++||+||+++|+||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999985555554443
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.38 E-value=4e-12 Score=90.15 Aligned_cols=61 Identities=30% Similarity=0.377 Sum_probs=56.3
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMN 169 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN 169 (211)
+.|+.+|+++||+||+++|.||+.|+++||.+|..|+.+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999999999999999999998888888776
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.34 E-value=1.3e-11 Score=108.74 Aligned_cols=88 Identities=28% Similarity=0.298 Sum_probs=80.8
Q ss_pred CCcccccCCCCCC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 96 EPQKSVASNDHGK-GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 96 ~~~~~~~~~~~~~-d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
.|.+|+.+.+++. ++|-.||.|+||++||-+|.|||+.++++|..+.+|..||..|..+...|+..+..|.++|.+|..
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~ 132 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDS 132 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3456677888875 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048456 175 MMEALENET 183 (211)
Q Consensus 175 ~L~~L~~q~ 183 (211)
+|..+.++.
T Consensus 133 ~le~~~~~l 141 (292)
T KOG4005|consen 133 ELELLRQEL 141 (292)
T ss_pred HHHHHHHHH
Confidence 998776653
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.16 E-value=2.4e-10 Score=78.83 Aligned_cols=52 Identities=31% Similarity=0.351 Sum_probs=48.5
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
.|+++.||. +||+||++||.||++|+.+||.+|..|+.+|..|..++..|+.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889998 9999999999999999999999999999999999999988864
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.08 E-value=2.2e-10 Score=110.01 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=60.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
||..|||+||+||..||+|||+|+.-||.+++.|..||..|+.+.+.|.++...|..||..|+.
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 7888999999999999999999999999999999999999999999999999999999988874
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.99 E-value=6.4e-10 Score=105.27 Aligned_cols=68 Identities=26% Similarity=0.309 Sum_probs=61.6
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
..||+||+|+|.+|||.||.|||.||+.||.+|.....+|.+|+.+|..|+ .+|..|-++|..++-.+
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le-------~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELE-------LSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHh-------hccHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999886 77888888887776654
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.70 E-value=3e-08 Score=89.66 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=49.6
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
..||.-|+++||++|+.=|.|||+|+.+||.+|..|+.+|..|.++|..|..-|
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 458899999999999999999999999999999999999999999999886443
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.86 E-value=1.8e-07 Score=70.93 Aligned_cols=56 Identities=30% Similarity=0.342 Sum_probs=47.1
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECK 163 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~ 163 (211)
.+.|.+||.++||.+|+.+|.||+.++.+||..+..|..+...|..++..+..+..
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~ 82 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERD 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999888777777776666654443
No 9
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.78 E-value=0.00057 Score=62.12 Aligned_cols=64 Identities=27% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCChHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 106 HGKGPKRMKRLL-ANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 106 ~~~d~KR~KR~l-~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
...++|+.+|.- .|..+|.|.|+||++-.+.|+.++..|+.+|.+|+.|+..|. .|.+.||+-+
T Consensus 221 ~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~le-------rEI~ylKqli 285 (294)
T KOG4571|consen 221 YKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELE-------REIRYLKQLI 285 (294)
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 345666666643 455569999999999999999999999988888888887775 5555666543
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.71 E-value=0.00016 Score=64.87 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=46.0
Q ss_pred CChHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKR-LLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 108 ~d~KR~KR-~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
.+..|+.| -++||++|.++|.||..+|..||.+|..|..+|..|...+..|..
T Consensus 202 qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 202 QEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 35567666 579999999999999999999999999999999988888777753
No 11
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.72 E-value=0.038 Score=40.61 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.-++.||.+|+.+-..+..|..++..|..++..|..+|..|+.....|.++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 357889999999988899999999999888888888888888888777654
No 12
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.55 E-value=0.013 Score=46.07 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
-+.+||.++..|-.+...|+.++..|..++..|..||..|+.+|..+++
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999876
No 13
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.44 E-value=0.15 Score=41.35 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 115 RLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALM 194 (211)
Q Consensus 115 R~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~ 194 (211)
+++.-=.+=-.+|.|=..+-+.|..++..+..++..|...+..|..++..+..+...+..+...+..+..-....+..++
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333344444555555555555555555555555555555555555555555555555555555554444444445555
Q ss_pred HHHHHHHHHH
Q 048456 195 EEKEALGLAY 204 (211)
Q Consensus 195 ~Ei~rL~~~~ 204 (211)
+|+.+|+..+
T Consensus 115 ee~~klk~~~ 124 (151)
T PF11559_consen 115 EELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 14
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.43 E-value=0.017 Score=45.77 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
-+..||.++..+..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4688999999999999999999999999999999999999999998744
No 15
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.27 E-value=0.049 Score=48.84 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 107 GKGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 107 ~~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
.++++=.-|--+|=++|++||.+.|.-..+...+|..|+.||..|..+|..|+ .|+..|+.-+
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~-------~el~~~~~~~ 252 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK-------KELATLRRLF 252 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 34554444445899999999999999999999999999999999999888886 4555555443
No 16
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.06 E-value=0.078 Score=43.37 Aligned_cols=65 Identities=26% Similarity=0.226 Sum_probs=44.0
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.-.|..||-|+||=.|+-=|-|....-++||.+-..|..+...|...++.+ ..|-..++.+...|
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~-------~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRL-------RRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 457999999999999999999998888887776666554444444444443 34444444444443
No 17
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.90 E-value=0.19 Score=37.85 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK----EALGLAYRLL 207 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei----~rL~~~~~~~ 207 (211)
-++.||.+|++--..+.-|..+|..|..++..|..++..++..-..|++ .|+.|+.|- +||+.++|.+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~-------en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888866666666666666655555555555554444333433 334444443 4556665554
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.81 E-value=0.22 Score=36.26 Aligned_cols=59 Identities=32% Similarity=0.260 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
.||..+..|+..+..+..+++..+..+..|..|+...-.+|...-. .+..|+.|++.|+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~-------e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE-------ENNKLKEENEALR 60 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4667777777777777777777766666666666555555554443 4444555555544
No 19
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.68 E-value=0.18 Score=43.66 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
.-|++|+.--+.|..+|+.|...|..+......|..|+..|+.++..+.+-.++ ..+|.+|++.|+..+.-
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~----aK~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK----AKALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 357888888889999999999999999988999999999999988888644432 24456666666665543
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.63 E-value=0.26 Score=42.76 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKE 198 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~ 198 (211)
+..+.++|...++...+....|..+|+.|+.++..+..+....++.++.+++.+.
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777778888888888888888887777777777777664
No 21
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.46 E-value=0.36 Score=35.87 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK----EALGLAYRLL 207 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei----~rL~~~~~~~ 207 (211)
-++.||.+|++--..+.-|..+|..|..++..|..|-+.+.....+|+. .|+.|+.|- +||+.++|-+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~-------eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER-------ENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677777777654444444444444443333333333333333333333 344444443 4566666544
No 22
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.40 E-value=0.23 Score=36.16 Aligned_cols=51 Identities=22% Similarity=0.126 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.++.-+..++...+.+|..|...-.....+......+|..|+..+..|.++
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777777777777777766666554
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=95.11 E-value=0.18 Score=37.94 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETA 184 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~ 184 (211)
++|..++..|+.....|..++..++.++..|..||..|..-+..|.....
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~ 68 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSS 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67888999999999999999999999999999999999999999866543
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.56 E-value=0.39 Score=34.86 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 161 ECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 161 ~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.|..|..||..|++++..+..+
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 25
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.46 E-value=1.6 Score=37.96 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH----------------HHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE-----TAAKE----------------AEFQAL 193 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q-----~~~~~----------------a~~e~L 193 (211)
.-|..++..|+.+|..|......++..+..|.+++..|+.++=.++.- +.+.+ .+.+.|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeL 177 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEEL 177 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999999999999999999888222211 11111 255778
Q ss_pred HHHHHHHHHHHhhh
Q 048456 194 MEEKEALGLAYRLL 207 (211)
Q Consensus 194 ~~Ei~rL~~~~~~~ 207 (211)
+.||-+|...+.+.
T Consensus 178 R~e~s~LEeql~q~ 191 (193)
T PF14662_consen 178 RLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888887666543
No 26
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.24 E-value=0.2 Score=39.84 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA--LENET 183 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~--L~~q~ 183 (211)
.+.+||.++-.|-.+...|++.+..|-.++..|..||..||.+|.. ++..+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~ 61 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTA 61 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence 3678999999999999999999999999999999999999999988 44433
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.00 E-value=2.2 Score=34.26 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH-HHH------HHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREM----------KEMMEALENET-AAK------EAEFQALMEE 196 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~L----------k~~L~~L~~q~-~~~------~a~~e~L~~E 196 (211)
|-.+|.++..|+.++..|..+-..+.++...|+.+|..+ +.++..|+..- .+. .-..+.|+..
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344555555555555555555555555555555555444 33333332221 111 1255788888
Q ss_pred HHHHHHHHhh
Q 048456 197 KEALGLAYRL 206 (211)
Q Consensus 197 i~rL~~~~~~ 206 (211)
|..||..|..
T Consensus 105 v~DlK~myr~ 114 (120)
T PF12325_consen 105 VQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 28
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.84 E-value=3.6 Score=36.39 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 048456 126 SRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLA-Y 204 (211)
Q Consensus 126 SR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~-~ 204 (211)
+=+-.-.+|.+++.....|..|-..+..+|....++...|.+.-+.++................+..|+.+|+.++.. .
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455889999999999999999999999999999999999999999888888777777777889999999999888 5
Q ss_pred hh
Q 048456 205 RL 206 (211)
Q Consensus 205 ~~ 206 (211)
|+
T Consensus 106 gl 107 (230)
T PF10146_consen 106 GL 107 (230)
T ss_pred CC
Confidence 54
No 29
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=93.61 E-value=0.18 Score=50.26 Aligned_cols=64 Identities=27% Similarity=0.304 Sum_probs=51.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 113 MKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 113 ~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
+||-=+||++||+=|.||..-|..||..|..|+.+-..|..+- ..+..+-..++++|..|-+++
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er-------~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER-------DELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555679999999999999999999999999987776665543 344577788889988887765
No 30
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.21 E-value=2.4 Score=35.89 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
+++.-++.|+.|...|..++..++..+..|..||..|-++
T Consensus 141 ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 141 EKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 31
>PRK11637 AmiB activator; Provisional
Probab=93.20 E-value=3.1 Score=39.11 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..+.+++.++..+..+...+..++..++++...+..+-..|..++..+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433333333333333333333
No 32
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.08 E-value=0.93 Score=32.89 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
..||.+|..|=..+..|..+...|.++...+..|+..|.+++..-.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444444454445555566666666554443
No 33
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.06 E-value=6.3 Score=35.24 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=58.8
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETE---------CKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~---------~~~L~~EN~~Lk~~L~~L 179 (211)
-+|-++.+..-...+.+.-.-++.-+++|+.+|..++.+...+..++..++.. +..|.-|-..++.+...|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777788888888888999999999999999999999999887654 555666666666666666
Q ss_pred HHHH
Q 048456 180 ENET 183 (211)
Q Consensus 180 ~~q~ 183 (211)
+.+.
T Consensus 109 e~el 112 (239)
T COG1579 109 EDEL 112 (239)
T ss_pred HHHH
Confidence 6654
No 34
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=1.1 Score=44.96 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
+..|+.+|+.|+.+|..|...+..++.+...|..+-..++.+
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777765555555554444433
No 35
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.72 E-value=1.8 Score=36.63 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKK---EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 132 ~yieeLE~---kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.|++.|.. ....+..||..|..++..|+.++..|..||..|..++..++..
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 3667788888888888888888888888888888888777664
No 36
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=92.69 E-value=1.5 Score=39.61 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=36.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAY-MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAK 186 (211)
Q Consensus 130 Kk~y-ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~ 186 (211)
+..| |.+|+.+-+.|+.||..|.+....|..++++|..+-..|++.|..+.++++..
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4443 45666666666666666666666666666666666666666666666665443
No 37
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.34 E-value=2.9 Score=30.88 Aligned_cols=50 Identities=24% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECK--------VLGKMNREMKEMMEALENET 183 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~--------~L~~EN~~Lk~~L~~L~~q~ 183 (211)
+-+.|..+..|..||-.|.-+|-.|.+... .+..+|-+|+..+..|..+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el 59 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKREL 59 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999998887755 34556666666655555543
No 38
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=92.26 E-value=2.4 Score=32.36 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYET------ECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLA 203 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~------~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~ 203 (211)
+..+|..|..+|..|+. +.+....||-.|+.++..+..-. -.+..|.+-.||..|+.+
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 44555555555555553 35566789999999888887654 445677888888888653
No 39
>PRK11637 AmiB activator; Provisional
Probab=92.05 E-value=7.9 Score=36.42 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 129 RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
..+.-+.+++.+...++.+...+..++..++.+...+..+-..+..++..++.+..-.+...+.+++.+
T Consensus 58 ~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 58 AKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555554433333333344444
No 40
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.05 E-value=2.8 Score=35.49 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
+..+..|+.++..|..++..+..+......-|..|+..+..|.-+.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.84 E-value=3.9 Score=30.01 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..|+..+..+-..++.|+.+...|..+|..|...-..|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34555555555555555544444444444444333333
No 42
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.68 E-value=1.6 Score=42.50 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETEC-KVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~-~~L~~EN~~Lk~~L~~L 179 (211)
..|+.+-+.|..||..|..+...+.++. ..+.++..+|.++.+.|
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql 121 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQL 121 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444444444444444444443333332 22334444444444443
No 43
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.62 E-value=2.1 Score=31.81 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
|.-|.-.|..|..+|+.|...+..++.....|..||..|++.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888888888888875
No 44
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.55 E-value=2.8 Score=37.66 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
+++-.+++.++.++.+|..++..++ .+-.+++.+|..|+.+.-..+-....|..|+.+|+.-.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele-------~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELE-------AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 4445555555555555555555554 33333333444443333332333333444444444433
No 45
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.40 E-value=1.3 Score=31.98 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
..|.+||.++..++.-+.+|...|..-+++...|....+.|..+|..+..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999888888888888888888888887763
No 46
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.21 E-value=4.4 Score=41.77 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHh
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALENETAAKEA---------------------EFQALMEEKEALGLAYR 205 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a---------------------~~e~L~~Ei~rL~~~~~ 205 (211)
+..|+.....+..||..||-.+..+..+.-|+-. ....|..|++|||.++.
T Consensus 136 ~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 136 IEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666777777666666665544431 44789999999998874
No 47
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.17 E-value=3.7 Score=41.96 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
-.+.||.+...|..+..+++.+-..|-++|..|..||=.|..++..|.+-. +.+|.|+-||.||
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQ----vefE~~Khei~rl 133 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQ----VEFEGLKHEIKRL 133 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHH
Confidence 358889999999999999999999999999999999999999999996543 2444555555444
No 48
>PRK09039 hypothetical protein; Validated
Probab=91.15 E-value=11 Score=34.87 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+..+..+.++...+|..|+++...|......|...|...
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444333
No 49
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.12 E-value=6.6 Score=36.02 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.+++.+++.|+.+...|..++..|+.+...|..|-..|+.+...+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444
No 50
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.12 E-value=1.2 Score=43.40 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
-..+||.++..|+.+...|..+...+++....|..||..|+.++..+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999999988543
No 51
>PRK00295 hypothetical protein; Provisional
Probab=91.11 E-value=1.8 Score=31.21 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
|.+||.++..++.-+..|...|..-+++...|...-+.|..++..+.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999998888888888777777777777776654
No 52
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.03 E-value=7 Score=31.36 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
.-++.|...+..++.|...|..+++.|..+...+..|--.|-.....+.... .....|+.++..|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~----~~~~~L~~el~~l 80 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK----KEVEELEQELEEL 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4567788888888888888888888888777777777766666665554433 2334455555444
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.80 E-value=6.9 Score=34.01 Aligned_cols=55 Identities=5% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
...+|..++........+|..+...|.++...+.+++..|+.++..+.....++-
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~w 173 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444455666666666666655554443
No 54
>PRK02119 hypothetical protein; Provisional
Probab=90.57 E-value=1.8 Score=31.72 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
-|.+||.++...+.-+.+|..-|..-+++...|..+-+.|..+|..+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777766666666666666666666666666666665555544
No 55
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.33 E-value=2.3 Score=31.05 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+.|.+||.++...+.-+.+|..-|..-+++...|..+-+.|..+|..++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788888887777777777777777777666666666666665543
No 56
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.28 E-value=1.3 Score=29.81 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
|+.....|...-..|..++..|..||..|+.++..|...
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555566666666667777777766666543
No 57
>PRK00736 hypothetical protein; Provisional
Probab=90.19 E-value=2.6 Score=30.48 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
.|.+||.++..++.-+.+|..-|..-+++...|...-+.|..++..++
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388999999999988888888888888777777777777777665543
No 58
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=89.93 E-value=0.02 Score=53.83 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=52.8
Q ss_pred ccCCCCCCChHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 048456 101 VASNDHGKGPKRMKRLLANRVSAQR---SRLRNLAYMEKLKKEIDNEE-ARLSVLLPLVSHYET 160 (211)
Q Consensus 101 ~~~~~~~~d~KR~KR~l~NReSAqr---SR~RKk~yieeLE~kv~~L~-~en~~L~~~l~~L~~ 160 (211)
........+.||..|..+|+.+|.+ +|.+++.+...|..+|..|+ .++..|..++..|+.
T Consensus 144 ~~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn 207 (395)
T KOG1414|consen 144 PSVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN 207 (395)
T ss_pred CCCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence 3345566788999999999999999 99999999999999999999 888888888888763
No 59
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=89.89 E-value=9.9 Score=32.96 Aligned_cols=77 Identities=19% Similarity=0.145 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETEC----KVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~----~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
.|...||..+..|+.+...+..++..+...- .....+...|..+-..+-....--+.-...|..||.+|+...+..
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888899999999999998888876532 223334456777766666666555666788999999998877655
Q ss_pred c
Q 048456 208 G 208 (211)
Q Consensus 208 ~ 208 (211)
.
T Consensus 216 ~ 216 (221)
T PF05700_consen 216 K 216 (221)
T ss_pred h
Confidence 3
No 60
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.77 E-value=12 Score=32.11 Aligned_cols=94 Identities=28% Similarity=0.288 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA 188 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a 188 (211)
|-+-++.-|....+-+..+...+.+...||.++..-..++..+...+..|++....|..+...++...+....+..-..+
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677788888888899999999999888766666666666666655555555444444443333322211222
Q ss_pred HHHHHHHHHHHHHH
Q 048456 189 EFQALMEEKEALGL 202 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~ 202 (211)
.-+.+.++|..++.
T Consensus 167 ~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 167 EAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 61
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.72 E-value=7.6 Score=33.13 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 151 LLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 151 L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|..++......+..|..++..|...+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 62
>PRK04325 hypothetical protein; Provisional
Probab=89.72 E-value=2.7 Score=30.81 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
|.+||.++..++.-+..|..-|..-+++...|...-+.|..+|..++
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888888888888888777777666666666666665543
No 63
>PRK04406 hypothetical protein; Provisional
Probab=89.59 E-value=2.7 Score=31.00 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
.|.+||.++..++.-+.+|...|..-+++...|..+-+.|..++..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666665555555555555555444443
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.59 E-value=6.7 Score=32.04 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.+.||.+++.|+.++..+..+|..|+..+..|..+-..+..+|..+..
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666655555555555433
No 65
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.58 E-value=9.6 Score=30.69 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 048456 114 KRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMN-------REMKEMMEALENETAAK 186 (211)
Q Consensus 114 KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN-------~~Lk~~L~~L~~q~~~~ 186 (211)
.|=+..|+.......++..-++.|+..+..|+.++..+..++..++.....|..++ +.++..++.+.......
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666555555555556666655555555555555555555544444444 44444444444333222
Q ss_pred HH----HHHHHHHHHHHHHHHHh
Q 048456 187 EA----EFQALMEEKEALGLAYR 205 (211)
Q Consensus 187 ~a----~~e~L~~Ei~rL~~~~~ 205 (211)
.+ ....-..||++|+..++
T Consensus 128 ~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 22333446777765543
No 66
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.45 E-value=16 Score=36.36 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMK 173 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk 173 (211)
+++-..........-+..++.|+..+...+.++..|..+...+......|..|+..|+
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~ 212 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK 212 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443444444433334444444444444444444444444433333333333333333
No 67
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.36 E-value=12 Score=36.35 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------HHH---------HHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET------A------AKE---------AEFQ 191 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~------~------~~~---------a~~e 191 (211)
.++.|+.++++|..+|.+|+.-++.|...+..|..+-+.+-++|..+.-+. + +++ -+.+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467788899999999999999999999988888888877666666553321 1 111 1447
Q ss_pred HHHHHHHHHHHHHh
Q 048456 192 ALMEEKEALGLAYR 205 (211)
Q Consensus 192 ~L~~Ei~rL~~~~~ 205 (211)
.|.+|+++|+..-+
T Consensus 378 elrkelehlr~~kl 391 (502)
T KOG0982|consen 378 ELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888866543
No 68
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=89.29 E-value=0.67 Score=39.24 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEF 190 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~ 190 (211)
++++|.++.+-=.+|+-|..+| .+...|..+++.||..+..|.++..+++.+.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999988999998888 5567788888888888888888876666543
No 69
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.09 E-value=4.9 Score=37.00 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 048456 193 LMEEKEALGLAY 204 (211)
Q Consensus 193 L~~Ei~rL~~~~ 204 (211)
-++||++|++..
T Consensus 122 ARkEIkQLkQvi 133 (305)
T PF15290_consen 122 ARKEIKQLKQVI 133 (305)
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 70
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.94 E-value=9.4 Score=35.00 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 123 AQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 123 AqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
...-..+..+-+.+||.+...|..+...|..+...+.++-...-.+...+..++..+..+...-.+..+.+..++++|+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555666666666666666666666666665555566666666666666666666666666677777777753
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.90 E-value=25 Score=35.05 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+-...||.++..|+.++..|...+...+.++..|..++..+....+.+
T Consensus 157 ~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l 204 (546)
T PF07888_consen 157 KENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL 204 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555444444444444444444444433
No 72
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.86 E-value=2.6 Score=37.64 Aligned_cols=51 Identities=25% Similarity=0.366 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 121 VSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 121 eSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+.+||-|-|++. .+||.++..+..++..|..++..|+ ++|-.|-+++--|+
T Consensus 84 VtsQRDRFR~Rn--~ELE~elr~~~~~~~~L~~Ev~~L~-------~DN~kLYEKiRylq 134 (248)
T PF08172_consen 84 VTSQRDRFRQRN--AELEEELRKQQQTISSLRREVESLR-------ADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 678888887765 8888888888777777776666665 77878877766553
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.47 E-value=20 Score=36.04 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 129 RNLAYMEKLKKEIDNEEA------------------------RLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~------------------------en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
.+...|.+||..+..++. .|.+|+.++..|+..+..|+++|-+|...|+.-.
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq 194 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ 194 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 566777788877766544 4667778888888888888888866666555433
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.40 E-value=13 Score=30.66 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 115 RLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 115 R~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
-...|.+.|-.--+-+++.++.|+.++..+..+...|...+..+..+...|..+-...+.++..|+.-
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777878888888888888888888888888888888888877777777777777777766554
No 75
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=88.05 E-value=6.1 Score=30.67 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
.+..+..++..+..++..++.+...+...|.+|-..+..+..+.....
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~ 51 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQR 51 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 456677788888888888888888888888888888888866654333
No 76
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.95 E-value=12 Score=37.90 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=44.5
Q ss_pred HhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 118 ANRVSAQRSRLRN-LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGK---MNREMKEMMEALENETAAKEAEFQAL 193 (211)
Q Consensus 118 ~NReSAqrSR~RK-k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~---EN~~Lk~~L~~L~~q~~~~~a~~e~L 193 (211)
.+|..+...+..+ ...+.+|+..+..++.++..|..++..+......=.- |-.++..++..|+.+..=+....+.|
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433322 2344555555555555555555555555444332222 22233344555555544444566777
Q ss_pred HHHHHHHHHHHhhh
Q 048456 194 MEEKEALGLAYRLL 207 (211)
Q Consensus 194 ~~Ei~rL~~~~~~~ 207 (211)
+.++.+|+...++-
T Consensus 501 ~~~l~~l~k~~~lE 514 (652)
T COG2433 501 ERKLAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHHHHhhh
Confidence 77777777555543
No 77
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.86 E-value=16 Score=31.18 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMN 169 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN 169 (211)
.+|+.++..|+.++..|..++..+...+..+...+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444443333
No 78
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.86 E-value=17 Score=31.45 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 126 SRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 126 SR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
.-...+..+..++.++..|+.++..+..++...++....+...+...+..+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666666666666666666666666555554
No 79
>PRK00846 hypothetical protein; Provisional
Probab=87.77 E-value=4.6 Score=30.17 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+.|.+||.++...+.-+.+|...|...++....|...-+.|..+|..++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777777777777766666666665566666555554
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.65 E-value=21 Score=34.45 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=59.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
||++.+-++=..-.++....+.-...||..++.++.+++.+..++.........+...+..+...+..|+.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777776665555566666677778999999999999999999999998888888888888888888887776
No 81
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=87.59 E-value=7 Score=31.65 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048456 150 VLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYR 205 (211)
Q Consensus 150 ~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~ 205 (211)
-|..+-..++++-.....|-++|+.++..|+.+..-.+.++..|...|.-|..++.
T Consensus 8 fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 8 FLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555556666777777777777766666666666666666655553
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.44 E-value=8.9 Score=35.02 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 048456 193 LMEEKEALGLA 203 (211)
Q Consensus 193 L~~Ei~rL~~~ 203 (211)
|+.+++.|...
T Consensus 281 Lk~~~~~Le~~ 291 (325)
T PF08317_consen 281 LKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 83
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.35 E-value=7.2 Score=36.10 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 143 NEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 143 ~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..+.++..|..++..+++.+..+..||.+|.++|...
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3677889999999999999999999999999998776
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.11 E-value=15 Score=32.55 Aligned_cols=63 Identities=22% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
..+..+...+..++......+..+..+...|+..+........-.+...+.|++|+.-|+...
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333333333334444444444444443333333333345566666666665443
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.02 E-value=15 Score=37.40 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 125 RSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 125 rSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
++|+.=|+-+..||+++...+..-..+.+++..-+
T Consensus 481 ~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 481 QARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666665555555555555444
No 86
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.88 E-value=26 Score=35.13 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
+.|+.+++.+.+.+......|..++.....++..|..+|..|+.++.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888888888888888888887654
No 87
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.85 E-value=14 Score=29.36 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
|..-+..|..+...+.+.+..|.+.-..++.
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 88
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=86.84 E-value=11 Score=32.04 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 148 LSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 148 n~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
|.+|..-.+.|..+.......|..|...|..+..+
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 89
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.80 E-value=4 Score=28.77 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALM 194 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~ 194 (211)
|+.+...+...++.++ .||.+|+..++.+.+-..---.++|.+.
T Consensus 5 lEn~~~~~~~~i~tvk-------~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 5 LENELPRIESSINTVK-------KENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455554 6677777777666665533334555443
No 90
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.69 E-value=6.4 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
+|=.++..|+.....|..++..|......|..||..|+..
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777777777777776664
No 91
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.66 E-value=16 Score=31.59 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
.+..++..++..+..|..++..+.........+-.+++..+..
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333
No 92
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.57 E-value=8 Score=34.85 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 128 LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 128 ~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.-.+..++++-.....|-.++.+|...+..++.....|..||+.|...+..+..+.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 34556677777778888888888888888888888888888888888888887665
No 93
>PRK09039 hypothetical protein; Validated
Probab=86.50 E-value=11 Score=34.97 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|..|..++..|+.+++.|+.....+.......+.++..|
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443333
No 94
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.22 E-value=15 Score=37.27 Aligned_cols=69 Identities=25% Similarity=0.244 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE---AEFQALMEEKEALGL 202 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~---a~~e~L~~Ei~rL~~ 202 (211)
+..|..++..|..+...+..++..+.+.+.....++..+..+|..++....-+. ..+..|..+|..|+.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777777777777777888888888887777777777777777766665555 666777777777764
No 95
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.20 E-value=30 Score=38.34 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=48.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAY-------------MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~y-------------ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
++++.+-+..+.|.+.+.-+..+ +++|+.++.....+..++..++..++.+...+..+...|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666655544331 23334444444444444445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 178 ALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 178 ~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
.+.+...........+...+.+|..+-..
T Consensus 401 elqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444445556666655444433
No 96
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.06 E-value=15 Score=32.38 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048456 161 ECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYR 205 (211)
Q Consensus 161 ~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~ 205 (211)
.+..+..||..|+.++..|+.+. ...+.+++|-++|+.+++
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~----~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL----QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 34455566666666666665544 233456666666666554
No 97
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.93 E-value=24 Score=32.75 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 121 VSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 121 eSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
+++||-..-.+..+.++|...+.-+........+-..++.....|..||--|+++|.....+...++
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778777778888888888888877777777777777777777888888888888877766654444
No 98
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=85.85 E-value=6 Score=42.01 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETEC--KVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLLG 208 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~--~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~~ 208 (211)
+++|+..-..|..+-.-|.+++..+..+. ..+..++=.|++++..|+-+.-.-....+.|..|+..|.+...++.
T Consensus 266 veelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 266 VEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444455555554444 5556666777777777777776666777888888888877665553
No 99
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.76 E-value=7.6 Score=30.50 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+|=..+..|+.....|..++..|......|..||..|+..-..|
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777777777777777654444
No 100
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.62 E-value=15 Score=34.10 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
++|..++..|+.+|..|..++......+..|..+|+.|+..-..+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~ 69 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA 69 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666666665544433
No 101
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.54 E-value=30 Score=31.98 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEI-------DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv-------~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.++.-|..+=+--.+-|.-|+=+|+-||.-+ ..-..+.+.|......|...|..|..-+..|-..|+.-+.++
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 3444444444444555555555566665432 223333444444444444555555555666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 048456 184 AAKEAEFQALMEEK 197 (211)
Q Consensus 184 ~~~~a~~e~L~~Ei 197 (211)
.+.++.....++.|
T Consensus 98 ~~lEgQl~s~Kkqi 111 (307)
T PF10481_consen 98 NFLEGQLNSCKKQI 111 (307)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665443333333
No 102
>smart00338 BRLZ basic region leucin zipper.
Probab=85.44 E-value=7.5 Score=27.08 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
.+..|+.+...|..+...|..++..|..++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 103
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.27 E-value=13 Score=36.43 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 143 NEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 143 ~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.|-.+..+++.++..|..++..|..||..|+++...+.+
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 333334444444445555555555666666655554433
No 104
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=85.23 E-value=5.6 Score=27.71 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 048456 166 GKMNREMKEM 175 (211)
Q Consensus 166 ~~EN~~Lk~~ 175 (211)
..+|..|+..
T Consensus 39 ~~en~~L~~~ 48 (64)
T PF00170_consen 39 ESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 105
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.15 E-value=6.8 Score=32.20 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLV--SHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l--~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+..+.+|+..+..|+.+.+.|...+ ..|......|..++..|..+|..|..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666554 45566677777888888888887765
No 106
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.08 E-value=17 Score=33.57 Aligned_cols=92 Identities=12% Similarity=0.087 Sum_probs=65.5
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA 188 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a 188 (211)
-++.+|.+.= +|-..+-.+.|+-+++-..++..|..||..|......|.+....|..+-..=..++..|+.+..--..
T Consensus 32 KE~qQrQfQl--eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 32 KERQQRQFQL--ESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444555321 33333444555556777888999999999999999999999999999888888888888888755555
Q ss_pred HHHHHHHHHHHHHH
Q 048456 189 EFQALMEEKEALGL 202 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~ 202 (211)
..+.|..||.+++-
T Consensus 110 qie~Leqelkr~Ks 123 (307)
T PF10481_consen 110 QIEKLEQELKRCKS 123 (307)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666655543
No 107
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=84.96 E-value=15 Score=27.87 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=56.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+|+.+.+.+=++|-..|.-+..-..+||.+++.|...-+.|..++......+..|..-|.++..+|...
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777777777899999999999999999999999888888999898888887654
No 108
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=18 Score=36.48 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYM----EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yi----eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
|.|..|..+.|-++-..+=..+-.-+ ..+|.+--.|..+..++.-+-+.|-++|..|..||=.|..++..|.+-.
T Consensus 115 eLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ 193 (772)
T KOG0999|consen 115 ELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQ 193 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence 67888888877665544433333222 3456666678888888888889999999999999999999999886643
No 109
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=84.76 E-value=2.7 Score=37.96 Aligned_cols=16 Identities=19% Similarity=-0.139 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 143 NEEARLSVLLPLVSHY 158 (211)
Q Consensus 143 ~L~~en~~L~~~l~~L 158 (211)
+|..||..|+.++..|
T Consensus 70 ~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 70 NLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 110
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.11 E-value=16 Score=29.90 Aligned_cols=67 Identities=27% Similarity=0.318 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA---EFQALMEEKEAL 200 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a---~~e~L~~Ei~rL 200 (211)
+.+||.+...++.++..|..++..|..+...+...-..++..+........-.++ .+..|.+|+++.
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444444444444444445555555554444333221111 234455555444
No 111
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.10 E-value=32 Score=35.18 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
+..+.++|+.|...|..++...+.++..|..|.++|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544444
No 112
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.03 E-value=6.9 Score=32.19 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETEC--KVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~--~~L~~EN~~Lk~~L~~L~~q 182 (211)
+.+|..++..|..++..|..++..|...- ..|......|+..+..|+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEK 131 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888876553 34445555555555555444
No 113
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.64 E-value=26 Score=37.40 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=44.7
Q ss_pred HHhhHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 117 LANRVSAQRSRLR----NLAY------MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAK 186 (211)
Q Consensus 117 l~NReSAqrSR~R----Kk~y------ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~ 186 (211)
|+++..|.|.+.- +..| ......+++.|+.+...+..++..++..+......+..|+.++..++.+..-+
T Consensus 416 LK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~ 495 (1041)
T KOG0243|consen 416 LKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNK 495 (1041)
T ss_pred HHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677665421 2233 23344455566666666666666666666655555666666665555544444
Q ss_pred HHHHHHHHHHHHHH
Q 048456 187 EAEFQALMEEKEAL 200 (211)
Q Consensus 187 ~a~~e~L~~Ei~rL 200 (211)
....+.+++|+..+
T Consensus 496 ~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 496 NKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 114
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.49 E-value=20 Score=38.04 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH-
Q 048456 120 RVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECK----------VLGKMNREMKEMMEALENETAAKEA- 188 (211)
Q Consensus 120 ReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~----------~L~~EN~~Lk~~L~~L~~q~~~~~a- 188 (211)
++-++.-=++|..-+++|++....|..+...+...|..|+.+.. +|...|-+|..++..|+....-.++
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 45666667788888888888888888888888888888887743 4455555666666655554433332
Q ss_pred -------------HHHHHHHHHHHHHHHHh
Q 048456 189 -------------EFQALMEEKEALGLAYR 205 (211)
Q Consensus 189 -------------~~e~L~~Ei~rL~~~~~ 205 (211)
+.--|++||+.++.+..
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~k 507 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGARK 507 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 22347778877755443
No 115
>PRK02119 hypothetical protein; Provisional
Probab=83.40 E-value=12 Score=27.45 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+..+|.++..|+...+.....|..|......-..+...|+.+|..|
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888877777777655544444444444444444
No 116
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.24 E-value=37 Score=33.89 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 122 SAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 122 SAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.|.+.+..=..-+.+.+..+.+++.+.+.+..++..+..+...|..||..|...|..+..+
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3333333333444555666667777777777777777777777778888777777776543
No 117
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.17 E-value=12 Score=39.02 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..|+++|-..+..+.....++-.+++.+.+....|..||.+|...++.+
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777777666655
No 118
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.15 E-value=29 Score=29.83 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=35.6
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLG 166 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~ 166 (211)
+-..+++.+.+-++-..+=..-+..+..++.++..|+.++..|..++..++++...|.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666655555555556666666666666666666666666665555554
No 119
>PRK04406 hypothetical protein; Provisional
Probab=83.12 E-value=12 Score=27.55 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
++.||.++..|+...+.....|..|......-..+...|+.+|..|
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888888887777655555555555555554444
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.11 E-value=32 Score=31.34 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 128 LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 128 ~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
..+..-+.+++..+..++.+...|-.++..++.+...+..++.+++..|..++++-
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999888887763
No 121
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=83.04 E-value=4.7 Score=31.95 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
|-.+|-.|+.....|..++..+..++-.|..||+.|-+-++.|..-
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 4567778888888999999999999999999999999998887654
No 122
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.98 E-value=41 Score=36.12 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARL-SVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en-~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|.-+..||.++..++.+- ..+..++...+.++..|..|+..|..++..|
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433 4444444444444444444444444444444
No 123
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=82.96 E-value=29 Score=35.13 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
-.+|+.+|..|+.++..|..+|..++.+...-..+-.....++........+.++....+..+...|+
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~ 148 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILR 148 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888889999988888888888887777776666666677777766666666655555554443
No 124
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.73 E-value=39 Score=36.05 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 113 MKRLLANRVSAQRSRLRNLAYMEKL-----------------KKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 113 ~KR~l~NReSAqrSR~RKk~yieeL-----------------E~kv~~L~~en~~L~~~l~~L~~ 160 (211)
.|++.+-|..|....+.|-+|..+| |.+...|+.+...+.+++..|.-
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~delet 346 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELET 346 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888887776 33444455555555555554443
No 125
>PF15294 Leu_zip: Leucine zipper
Probab=82.54 E-value=5.3 Score=36.48 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
|...+..|+.||..|..++..++.++.....|+..|..+|..++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778889999999999999999999999999999998888876
No 126
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.19 E-value=5.5 Score=37.62 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 128 LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 128 ~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
.|-|.++..||.-+.++..||..|..++..+.+++.+...|++.|-..|.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999888888888865554
No 127
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=82.16 E-value=9.3 Score=34.49 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 163 KVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 163 ~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
..|..||..||.++..+..+... ..+.|++|-++|+.+++.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Confidence 34557777777776666332211 233367777777776654
No 128
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=82.09 E-value=27 Score=28.69 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
+.....+......+..+..+|..|......-......|+..+........-++..++.|+.|-+.|+.-+
T Consensus 29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHh
Confidence 3444455666777777778888887776666677778888888888877778888888998888887654
No 129
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.96 E-value=8 Score=30.08 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 149 SVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 149 ~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
..+..++..+++++..|..+|..|+.++..|..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344444445555555555666666666665554
No 130
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=80.86 E-value=11 Score=27.24 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAA 185 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~ 185 (211)
.....+..++..++++...+..+|..|+.++..|.....+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3444555666666666666677777777777777655433
No 131
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.84 E-value=38 Score=29.60 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|..++..|..+...|...+..++.....+..+-..|..++..+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333344444444444433
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.60 E-value=48 Score=33.09 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
+..+......+.+|...++.+...|+.+..-....|..|..+|++++..+
T Consensus 143 ~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 143 LDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334444556666666666666666666555556666666666665543
No 133
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.34 E-value=24 Score=32.04 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q 048456 188 AEFQALMEEKEAL 200 (211)
Q Consensus 188 a~~e~L~~Ei~rL 200 (211)
..+|.|++|++.|
T Consensus 225 dEyEklE~EL~~l 237 (267)
T PF10234_consen 225 DEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 3667788887766
No 134
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=80.29 E-value=6.3 Score=34.72 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
-.+..+|..+.+.|+.||..|..++..+ ..+..||..|+..|.
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~ 110 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 3344455555555555555555554443 266788888887654
No 135
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=80.20 E-value=23 Score=27.39 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVL--LPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 138 E~kv~~L~~en~~L--~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+.++..++.+...| ...+..|+-....+..+-+.|..+++.+..+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555554 4455555544445555555555555555444
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=80.10 E-value=14 Score=32.86 Aligned_cols=48 Identities=6% Similarity=0.241 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
-+-+|..++..|+.|+..|+.+++.++.+...+....+.|-.+|..+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888899999999999999999999998888888888888877654
No 137
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.93 E-value=24 Score=35.43 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 129 RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAE 189 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~ 189 (211)
...+-+++|..+++.|..+...+...+..+......+..+..+.+.....++++..+++..
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~ 385 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT 385 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777777777777777777777777777777777777776666543
No 138
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.63 E-value=9.6 Score=25.53 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
||.....|......|......|.+++..|.++-..|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 139
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.61 E-value=14 Score=34.02 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
...+.++...+.+...+..++..|+.++.....+...|...+...+....--..+...|..|.
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 344445555555555566666666666666667777777777666654433333444444444
No 140
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.56 E-value=43 Score=32.33 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 048456 188 AEFQALMEEKEALGLAYRLLG 208 (211)
Q Consensus 188 a~~e~L~~Ei~rL~~~~~~~~ 208 (211)
...+.+.++++.|+..+..++
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344566667766655554443
No 141
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=79.51 E-value=29 Score=32.15 Aligned_cols=11 Identities=27% Similarity=0.147 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 048456 193 LMEEKEALGLA 203 (211)
Q Consensus 193 L~~Ei~rL~~~ 203 (211)
|..|+..|+..
T Consensus 274 L~aEL~elqdk 284 (306)
T PF04849_consen 274 LQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 142
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=79.48 E-value=1.1 Score=34.77 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.||+.|...+..|..+|..|..++..|+.+...+......|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 589999999999999999999999999988888888888877766443
No 143
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.39 E-value=16 Score=26.15 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
||.++..|+...+.+...|..|.........+...|+.++..|..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888777777777777766655555555555555555544
No 144
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=79.26 E-value=29 Score=35.73 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
++..|+..+..|..+|..-......|..+|..|+.++..--.+...-+.....|..|++.++.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666665555555666667766666655555554445555555555555544
No 145
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.20 E-value=21 Score=35.07 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDN---EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE-AEFQALMEEKEALGLAY 204 (211)
Q Consensus 130 Kk~yieeLE~kv~~---L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~-a~~e~L~~Ei~rL~~~~ 204 (211)
-|+|+..+-..+.. .+.....|..++...+.+......|...|+.++..-..-.-+++ +.++..++|++.||+++
T Consensus 240 akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L 318 (575)
T KOG4403|consen 240 AKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 34455444444443 34455667777777777777777777777777663333223333 47788888999998876
No 146
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=79.03 E-value=41 Score=30.02 Aligned_cols=74 Identities=20% Similarity=0.105 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 121 VSAQRSRLRNLAYME----KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEE 196 (211)
Q Consensus 121 eSAqrSR~RKk~yie----eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~E 196 (211)
+|+--.=+||.-+++ .++.+++.|+.++..|..+|+.+...+..-.-.+.++++ ......++|
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~-------------ieEkk~~ee 236 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE-------------IEEKKMKEE 236 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH-------------HHHHHHHHH
Confidence 344455566655543 356666677777777777766665554444444444333 233445566
Q ss_pred HHHHHHHHhhh
Q 048456 197 KEALGLAYRLL 207 (211)
Q Consensus 197 i~rL~~~~~~~ 207 (211)
|+.|+....|+
T Consensus 237 i~fLk~tN~qL 247 (259)
T KOG4001|consen 237 IEFLKETNRQL 247 (259)
T ss_pred HHHHHHHHHHH
Confidence 66665544443
No 147
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.74 E-value=41 Score=33.57 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+.+-.+...++.+|..|..+|..++.+...+..|+.+|.+.|+..-
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556777777788888888777777778877777777663
No 148
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.64 E-value=4.2 Score=29.07 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 148 LSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 148 n~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
...|+.+|..|+..+..|..||..||+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555666788877764
No 149
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=78.58 E-value=24 Score=26.09 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHhh
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMMEALENETAA----KEA---EFQALMEEKEALGLAYRL 206 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~----~~a---~~e~L~~Ei~rL~~~~~~ 206 (211)
=.=++.++.+...++.|+-.||+++..++++.-. .|| ....|.+|.+.++.++..
T Consensus 7 P~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 7 PSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 3457789999999999999999999999887521 111 446677777777776654
No 150
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.54 E-value=42 Score=32.70 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Q 048456 128 LRNLAYMEKLKKEIDN--------------EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE---------TA 184 (211)
Q Consensus 128 ~RKk~yieeLE~kv~~--------------L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q---------~~ 184 (211)
.=|++|-+++|+.+.. ...+...+..++..|..+|..--.||..|-+.+..-++- ..
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL 468 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL 468 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3588999999988654 334566677777777777777777888887766543221 11
Q ss_pred HHH--HHHHHHHHHHHHHHHHHh
Q 048456 185 AKE--AEFQALMEEKEALGLAYR 205 (211)
Q Consensus 185 ~~~--a~~e~L~~Ei~rL~~~~~ 205 (211)
... .+|..|-+||.+|+..+.
T Consensus 469 naHNQELnnRLaaEItrLRtllt 491 (593)
T KOG4807|consen 469 NAHNQELNNRLAAEITRLRTLLT 491 (593)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc
Confidence 111 256778999999987763
No 151
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.39 E-value=37 Score=28.02 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 048456 133 YMEKLKKEIDN 143 (211)
Q Consensus 133 yieeLE~kv~~ 143 (211)
+|..||+.+..
T Consensus 25 ~v~~LEreLe~ 35 (140)
T PF10473_consen 25 HVESLERELEM 35 (140)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 152
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.29 E-value=9.7 Score=26.77 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 150 VLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 150 ~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.+..++..++.+...+..+|..|+.+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555556666666666665
No 153
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=78.15 E-value=13 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEAR-LSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 133 yieeLE~kv~~L~~e-n~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|-..=|.+|..|..- -.....+|..|+.+...|..||..|+.++...
T Consensus 28 YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 28 YSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555411 12234455555555555555555555555444
No 154
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=77.55 E-value=42 Score=38.25 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=57.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+..-.+.|++++.-=++.+...|.++..|+.++.+|...+..+.+....+..|..++..++..+..+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4446788999999888999999999999999999999999999988888888888888888876544
No 155
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.51 E-value=51 Score=29.18 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 048456 190 FQALMEEKEALGLA 203 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~ 203 (211)
.+.|.+|=++|+..
T Consensus 195 ydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 195 YDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 156
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.25 E-value=10 Score=33.46 Aligned_cols=9 Identities=11% Similarity=0.036 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 048456 168 MNREMKEMM 176 (211)
Q Consensus 168 EN~~Lk~~L 176 (211)
++..|+.+.
T Consensus 180 ~~~al~Kq~ 188 (216)
T KOG1962|consen 180 KVDALKKQS 188 (216)
T ss_pred HHHHHHHHH
Confidence 333333333
No 157
>PF15294 Leu_zip: Leucine zipper
Probab=77.22 E-value=14 Score=33.74 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048456 156 SHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYR 205 (211)
Q Consensus 156 ~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~ 205 (211)
..|..+...|..||..|+.+|..++.++.+---....|...+..|+...|
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888999999999999999997777777778888888876443
No 158
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=77.05 E-value=23 Score=31.76 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.+|.+-.++....++..-..=+.....++.....|..||..|+.++..|++
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433322222222233333333344555555554444433
No 159
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=76.98 E-value=8.8 Score=26.71 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEA----RLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~----en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+..-|++||.+++.-.. .......+|+. |..||..|+.+|..+.
T Consensus 2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~-------l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSLDRSAARKRLSK-------LEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccCCchhHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 45567777777765441 22333344444 4577777777766543
No 160
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.89 E-value=30 Score=36.32 Aligned_cols=21 Identities=5% Similarity=-0.124 Sum_probs=12.7
Q ss_pred cccCCccccccCCCCCCCCCC
Q 048456 47 FSFEGDVETRKGDDDNNNNNH 67 (211)
Q Consensus 47 ~~~~~~~~sm~~d~~~~~~~~ 67 (211)
+++++..++||.-++.-...+
T Consensus 246 L~~dEfilam~liema~sGq~ 266 (1118)
T KOG1029|consen 246 LSADEFILAMHLIEMAKSGQP 266 (1118)
T ss_pred ccHHHHHHHHHHHHHHhcCCC
Confidence 455777888877554444333
No 161
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.73 E-value=43 Score=31.25 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=40.8
Q ss_pred HHhhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 117 LANRVSAQRSRLRNLA---------------YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 117 l~NReSAqrSR~RKk~---------------yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|..|.++.+...+... +-..|..-+.....+|..|...+..|++.+.++..++..|+..+...
T Consensus 35 Lqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 35 LQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 4455566655555444 22456666666777777777777777777777777777777766654
No 162
>PHA03011 hypothetical protein; Provisional
Probab=76.61 E-value=34 Score=27.27 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
...+-....+|.+|-..|.++++.+.++-+.|.+-++. .+.+.-.|+.||++|+....-
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQd-------n~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQD-------NDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHhc
Confidence 33344444455555555555555555555555544443 334445577777777765443
No 163
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=76.55 E-value=9.2 Score=25.91 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.+..|+.....|..+|..|+.++..|+.
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555556666666666666654
No 164
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.54 E-value=60 Score=34.92 Aligned_cols=60 Identities=18% Similarity=0.013 Sum_probs=36.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 110 PKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMN 169 (211)
Q Consensus 110 ~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN 169 (211)
.+-+|-+|.||.--.---+++-.-++++-.+.-.|+.++..|..++..|+..+..+.-.+
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~ 431 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQL 431 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHH
Confidence 456777888887666666666666666666666666666666655555554444333333
No 165
>PRK02793 phi X174 lysis protein; Provisional
Probab=76.51 E-value=25 Score=25.57 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..+|.++..|+...+.....|..|.........+...|..+|..|
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888777777777777655544444444444444444
No 166
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=76.49 E-value=51 Score=30.10 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=48.4
Q ss_pred HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 048456 117 LANRVSA-QRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAE---FQA 192 (211)
Q Consensus 117 l~NReSA-qrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~---~e~ 192 (211)
|+|++.+ +-+|.||+.-..++ ..|+...- -..+|..|+++...+.++|-.-..+|..+..+. +++++ +++
T Consensus 133 IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~-lKEa~~~~f~A 206 (271)
T PF13805_consen 133 IRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK-LKEAYSLKFDA 206 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH-HHHHHHHHHHH
Confidence 5677765 45566665443333 33332221 246788899999999999999999999998876 66653 344
Q ss_pred HHHHHH
Q 048456 193 LMEEKE 198 (211)
Q Consensus 193 L~~Ei~ 198 (211)
|.+--+
T Consensus 207 l~E~aE 212 (271)
T PF13805_consen 207 LIERAE 212 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 167
>PRK10698 phage shock protein PspA; Provisional
Probab=76.42 E-value=51 Score=28.69 Aligned_cols=81 Identities=7% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q 048456 124 QRSRLRNLAY---MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA-----------E 189 (211)
Q Consensus 124 qrSR~RKk~y---ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a-----------~ 189 (211)
+..=.+|+.| +..|+..+.........|..++..|+..+..+.+.-..|..+...-+-+..+.+. .
T Consensus 88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~ 167 (222)
T PRK10698 88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMAR 167 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 3333444444 5567778888888888888888899888888889889999888888877777764 4
Q ss_pred HHHHHHHHHHHHHHH
Q 048456 190 FQALMEEKEALGLAY 204 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~~ 204 (211)
++.+.+-|.++....
T Consensus 168 f~rmE~ki~~~Ea~a 182 (222)
T PRK10698 168 FESFERRIDQMEAEA 182 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665443
No 168
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.36 E-value=44 Score=34.32 Aligned_cols=82 Identities=26% Similarity=0.253 Sum_probs=47.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 048456 117 LANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLP---LVSHYETECKVLGKMNREMKEMMEALENETAAKEA---EF 190 (211)
Q Consensus 117 l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~---~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a---~~ 190 (211)
|.-++.||--+-|-.+.+ ||.+-..|...-.-|.. ..+.|+.+...|++|-.+||.++.+|+.+..-.+. +.
T Consensus 130 LteqVeaQgEKIrDLE~c--ie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~s 207 (861)
T KOG1899|consen 130 LTEQVEAQGEKIRDLETC--IEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLS 207 (861)
T ss_pred HHHHHHHhhhhHHHHHHH--HHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhH
Confidence 445566666555544432 22222223222222222 23678888999999999999999999866533332 33
Q ss_pred HHHHHHHHHH
Q 048456 191 QALMEEKEAL 200 (211)
Q Consensus 191 e~L~~Ei~rL 200 (211)
+.|..||.++
T Consensus 208 e~l~qevn~~ 217 (861)
T KOG1899|consen 208 ENLMQEVNQS 217 (861)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 169
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=76.33 E-value=24 Score=24.91 Aligned_cols=35 Identities=9% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKM 168 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~E 168 (211)
|++|...|+.|......|...+..++.+......|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555555555555555444444333
No 170
>PRK04325 hypothetical protein; Provisional
Probab=76.26 E-value=24 Score=25.78 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+..+|.++..|+...+.....|..|......-..+...|+.+|..|
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888877777777777777554444444444444444433
No 171
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=76.17 E-value=30 Score=25.84 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET-AAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
.++.+-.....+..+...+..+-..+..++..-..|...++..+-.|+... .++ +.-.+||.+|+.-+..
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----QQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 456666777777777777777888888888888888889999998887764 333 3346788888876644
No 172
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=76.17 E-value=34 Score=38.90 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
-|.+||..+......+..+..++..++.+...|..+........+.+..+...-+..+..|..|++.|+..+
T Consensus 1612 di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l 1683 (1930)
T KOG0161|consen 1612 DINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKL 1683 (1930)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666555555555555555555555554444444444444444444444444555555444443
No 173
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=76.16 E-value=39 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA 188 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a 188 (211)
..++..|+.++.........-...|..|+..+.....
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433333
No 174
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.04 E-value=34 Score=26.46 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHY--ETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L--~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
|+.-++.|+.++.........+..++..| ..+.+.|..+-.+++-++..+..+.
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45556667777777777777777777666 6666666666666666666665553
No 175
>PRK14127 cell division protein GpsB; Provisional
Probab=76.02 E-value=25 Score=27.86 Aligned_cols=30 Identities=7% Similarity=0.216 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
.|+++.-..+..|..+|..|..++..|+.+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~ 59 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQ 59 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555433
No 176
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=75.93 E-value=28 Score=25.41 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 139 KEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 139 ~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
.++..|+.|-..|+.+.-.+. +-...|+..+..++.+..-.....+.+..++..|+..+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~-------~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLN-------NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444433333 33444444444444333222233444566666665443
No 177
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.92 E-value=49 Score=28.18 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 048456 189 EFQALMEEKEALGLAYRL 206 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~~ 206 (211)
..+.+++++..++.++..
T Consensus 136 ~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777766666543
No 178
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=75.89 E-value=33 Score=34.22 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 128 LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEA 199 (211)
Q Consensus 128 ~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~r 199 (211)
.++++-...++.+...+......+...+.....+......||..|..+|..+..+...-...++.+.+.++.
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777766666666666666666666666666677777766666665554444444444444433
No 179
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=75.57 E-value=17 Score=34.39 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|..|..+..++.++++.-.++|..+..|-..+|.-.
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~ 184 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMC 184 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333
No 180
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.34 E-value=48 Score=27.77 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
..+..+...|..++..|+.++..|....+.+..+...++
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 467777888888888887666666665556666655553
No 181
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.27 E-value=52 Score=28.22 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 139 KEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 139 ~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
..+..|+....+|..+...+.........|...|+.....+.+.
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333344444444444444443
No 182
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.09 E-value=44 Score=33.56 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
..+++|+.++..+..+...|...+..+..+......++..|...+.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666555555555555555544443
No 183
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=75.08 E-value=55 Score=28.37 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEALENETAA 185 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~ 185 (211)
+++.|+.++..-..+...|+..|+.|..-..+
T Consensus 48 q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~ 79 (206)
T PF14988_consen 48 QTSELQDQLLQKEKEQAKLQQELQALKEFRRL 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444444444444444555555554444433
No 184
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=75.08 E-value=15 Score=28.08 Aligned_cols=52 Identities=29% Similarity=0.210 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
......+.+++..|..|.+.|+.++..=. +..-....|-.|.+|+.+|+..+
T Consensus 16 l~~~~~~~~e~~~L~eEI~~Lr~qve~nP-evtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 16 LPSESYLEEENEALKEEIQLLREQVEHNP-EVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444432110 11222357788888888888766
No 185
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.59 E-value=36 Score=28.34 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYE-TECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~-~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
++|.....+....++|+..+..++ .+...+..++..|+..+..|.
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555554444333 223344444444444444443
No 186
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=74.40 E-value=20 Score=28.71 Aligned_cols=44 Identities=25% Similarity=0.284 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+=.+|..|+.....+.+++..|.++...|..||..|+.....|.
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 34567788888888888888888888888888888877655543
No 187
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=74.26 E-value=1.3e+02 Score=32.30 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=54.6
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLV-----SHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l-----~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
|..-.-|=|.||+--.-+.++.-+|-++.|.+-.+|......|..=+ ..+.+-...+..|-.+|+.++..-..+
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e 1104 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRME 1104 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445789999999999999999999999999988888776443 334444556677778888877665444
No 188
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.24 E-value=1.3e+02 Score=32.27 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=4.2
Q ss_pred hhhhhhhcc
Q 048456 26 ASDSLALMS 34 (211)
Q Consensus 26 ~sd~~~~~~ 34 (211)
++|.+.|++
T Consensus 595 a~dli~~d~ 603 (1163)
T COG1196 595 ASDLIDFDP 603 (1163)
T ss_pred HHHHhcCCH
Confidence 345555543
No 189
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.12 E-value=41 Score=33.99 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 048456 186 KEAEFQALMEEKEALGLAYRLLG 208 (211)
Q Consensus 186 ~~a~~e~L~~Ei~rL~~~~~~~~ 208 (211)
+....+.|++|.+.|+..+..+.
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455666666666666554443
No 190
>PRK00295 hypothetical protein; Provisional
Probab=74.10 E-value=29 Score=24.97 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+|.++..|+...+.....|..|.........+...|+.++..|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777655544444444555444444
No 191
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.03 E-value=74 Score=29.34 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 139 KEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 139 ~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
..+..|+.....|...++.+..-+-.|......|+..
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e 187 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEE 187 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333333333
No 192
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.85 E-value=55 Score=27.83 Aligned_cols=59 Identities=25% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 149 SVLLPLVSHYETECKVLGKMNREMKEMMEALENET-AAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 149 ~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
..|..++..|..+...|..+-..|+.+...++... ..+.........||+.|+....++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555554433 223344455666666666555443
No 193
>PRK00846 hypothetical protein; Provisional
Probab=73.51 E-value=31 Score=25.74 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+++|.++..|+...+....-|..|.............|+.+|..|.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777766555554444555555444443
No 194
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=73.48 E-value=18 Score=29.76 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048456 164 VLGKMNREMKEMMEALEN 181 (211)
Q Consensus 164 ~L~~EN~~Lk~~L~~L~~ 181 (211)
.|+.+|.+|.+++..|..
T Consensus 78 eLE~~k~~L~qqv~~L~~ 95 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKE 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 195
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.11 E-value=45 Score=33.81 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
|..|..|+.++..|..++.....+......--=.|-.+-..|.++.-=.++.++.++-|++.++.++|+.
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655544333332223333334444444444567788888888888887763
No 196
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.89 E-value=88 Score=33.71 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 122 SAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKM----------NREMKEMMEALENETAAKEAEFQ 191 (211)
Q Consensus 122 SAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~E----------N~~Lk~~L~~L~~q~~~~~a~~e 191 (211)
..++-|.+=+.-+++++.++..|......+..++..+..+.+.|.+. +..|...+...+++.--.++..+
T Consensus 679 ~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e 758 (1074)
T KOG0250|consen 679 ELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLE 758 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666678888888888887777777777777777777662 23344444444444334444555
Q ss_pred HHHHHHHHHHHHH
Q 048456 192 ALMEEKEALGLAY 204 (211)
Q Consensus 192 ~L~~Ei~rL~~~~ 204 (211)
.+++|++++..-.
T Consensus 759 ~l~~e~e~~~~e~ 771 (1074)
T KOG0250|consen 759 KLKEELEHIELEA 771 (1074)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 197
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=72.87 E-value=12 Score=34.41 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 048456 153 PLVSHYETECKVLGKMNREMKEMMEALENET-AAKEAEFQALM 194 (211)
Q Consensus 153 ~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-~~~~a~~e~L~ 194 (211)
++.+.|.-++..|+.+|.+||.+++.|+.+. -++.++.+..+
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677788899999999988877653 34444444433
No 198
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.84 E-value=20 Score=35.10 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 149 SVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 149 ~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.+|.++++.|+++...+...+..+..+|+.+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeL 109 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKL 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3334444444433333334444444444433
No 199
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.65 E-value=1e+02 Score=33.34 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
.+|+..++.+...+.+-...+..-++++..|..|-.+|...+...+++..-..-..+.|+.|+..|..
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555666666666666666666655554444444555555555543
No 200
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=72.58 E-value=27 Score=35.06 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 106 HGKGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 106 ~~~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
...|+|=.||- + |+=|-.--..+-++.+ ..-...|++++..|.+++..|..||..||.+|..|..+.
T Consensus 273 ~~~d~kv~krq--------Q-RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 273 VGSDIKVLKRQ--------Q-RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred CccCHHHHHHH--------H-HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 45788988884 1 3323222222222211 122456889999999999999999999999999997754
No 201
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.35 E-value=39 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
|--+|..|..+|..|...+..+......|..+|..|++.
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455555555543
No 202
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.86 E-value=49 Score=26.33 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~ 159 (211)
|+..+..|+.++.....++..|+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 203
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=71.80 E-value=26 Score=26.04 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
...+...+..++..++++...|..||..|+.++..+..-..|.+
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~ 76 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34456666777888888888888889999888888877665544
No 204
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.74 E-value=1e+02 Score=30.04 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
++++.++|..+..|+.||..|..+.....
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888877665543
No 205
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=71.34 E-value=4.5 Score=31.50 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGK---MNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~---EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
..+|..+..+..|...|.+.| .++-+.+... +...+..+...|+.+..=.+++.+.|..++..|+.....
T Consensus 11 ~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443 1111222222 222333444444444333444556666666666665543
No 206
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.31 E-value=25 Score=39.69 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE-TAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q-~~~~~a~~e~L~~Ei~rL 200 (211)
.+.-|+..+.+|..++.....+...|..||..-|+|-+.|..+ ..+.-..++.|..||.+|
T Consensus 1258 el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~L 1319 (1822)
T KOG4674|consen 1258 ELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRL 1319 (1822)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 3444555666666666666666666667777777776666544 222223444444455444
No 207
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.30 E-value=76 Score=28.34 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=51.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 048456 112 RMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET--AAKEAE 189 (211)
Q Consensus 112 R~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~--~~~~a~ 189 (211)
-+|-+++-|+.+|---++|..|+..+-..-..+..+...+..++... |..+|..+...+.+. -++.++
T Consensus 150 slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~ 219 (243)
T cd07666 150 TLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAF 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888887777777777776543345555555555444443 666888888886663 677777
Q ss_pred HHHHHHHHHHH
Q 048456 190 FQALMEEKEAL 200 (211)
Q Consensus 190 ~e~L~~Ei~rL 200 (211)
.+.+..-|..-
T Consensus 220 ~~yae~~i~~~ 230 (243)
T cd07666 220 TDMAENNISYY 230 (243)
T ss_pred HHHHHHHHHHH
Confidence 77766666433
No 208
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.25 E-value=60 Score=34.43 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
....++..||..||..|..|.+|.+.|..-++.++.
T Consensus 99 ddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~ 134 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQD 134 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.20 E-value=87 Score=30.81 Aligned_cols=37 Identities=24% Similarity=0.119 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGK 167 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~ 167 (211)
++|.+.+-.++..|+.++..+.+....+.+..+++.+
T Consensus 353 k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~ 389 (493)
T KOG0804|consen 353 KQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQT 389 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555555444444444433333333
No 210
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.04 E-value=34 Score=25.39 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
-|.+||.++..-+.-+.+|...|+..+.....+...-+.|-.++..++
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777777766666666666666665555444444444444444443
No 211
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.58 E-value=69 Score=27.54 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA 188 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a 188 (211)
...+..|+.++..+......|..++..|++++..+.+.-..|..+......+..+...
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~ 155 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQ 155 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888888888888888888888888888888888888777766655553
No 212
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=70.43 E-value=1.5e+02 Score=31.49 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=36.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
.++|--+.-+...|---++-+..++++|.+....+.....|....+.|.+.+..|...|.....++
T Consensus 389 eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl 454 (980)
T KOG0980|consen 389 EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL 454 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444334444446777777666666666666666666666655555555444443
No 213
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.40 E-value=80 Score=28.21 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 170 REMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 170 ~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
..+|++...||.+..........|+.||+.|+.
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665555566667777766653
No 214
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=70.07 E-value=44 Score=28.97 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..|+.+|+.|+.++..+.++|..|.
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443
No 215
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=70.07 E-value=66 Score=31.96 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=45.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 115 RLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 115 R~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.+|++=...+-...-.+. ...+.++..+..|+..|..++...+++...+..+...+...+..|+.+.
T Consensus 412 ~LIk~~Y~~RI~eLt~ql--Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQL--QHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444443332 4456677778888888888888888887777777777777777776554
No 216
>PF15058 Speriolin_N: Speriolin N terminus
Probab=70.00 E-value=13 Score=32.54 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
+.|-.++..|-.||++|+++|..+ .||.+||.-
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksa 40 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLI--------RENHELKSA 40 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHH
Confidence 344555566666666666665554 455555544
No 217
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=69.51 E-value=55 Score=26.43 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
..|..-..=+.|-++|.++|+.|+-+...+..=|..|..++..||...
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566667788888888888777777777777777777776544
No 218
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=69.31 E-value=91 Score=28.43 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=67.4
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYME-KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yie-eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
|.|=.-+.|-.++=--+...|-+.... +|..-..+-.---.+|..++..|+++.++..-.-.=||..+..|.+++.-+.
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn 92 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERN 92 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHH
Confidence 444334455666666666666665544 4554444444445667788888888888887888889999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 048456 188 AEFQALMEEKEALGLAYR 205 (211)
Q Consensus 188 a~~e~L~~Ei~rL~~~~~ 205 (211)
.+...|..|+.|=....+
T Consensus 93 ~Li~~llqel~RHg~~~~ 110 (277)
T PF15030_consen 93 RLITHLLQELHRHGPANH 110 (277)
T ss_pred HHHHHHHHHHHHhcchhH
Confidence 888888888876544443
No 219
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=69.04 E-value=1.1 Score=42.35 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 048456 107 GKGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLL-PLVSHYE 159 (211)
Q Consensus 107 ~~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~-~~l~~L~ 159 (211)
..+++|.+=+.+||.+|-+.|.|||..+..|+.+...+..+|..|. .++..|.
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~ 334 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLR 334 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHH
Confidence 3466664448899999999999999999999999999999999888 4444443
No 220
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=69.03 E-value=8.3 Score=31.10 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSH 157 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~ 157 (211)
..-+++|..++..|+.||..|..+|..
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345788888888888888888877654
No 221
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.01 E-value=26 Score=27.17 Aligned_cols=30 Identities=10% Similarity=0.038 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.++.+.+++.+++.|+.+|..|..++..|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666666666666666666654
No 222
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=68.86 E-value=9.1 Score=29.28 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
|+.+++.|..+++.++.+|..|..+|..+.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577889999999999999999998887764
No 223
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=68.75 E-value=1.3e+02 Score=31.35 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEA 199 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~r 199 (211)
..+..-+..|...+...++++..|.+++..|+.+|..-..+..-+.+.++.+.+|..+
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~ 375 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR 375 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445555666666666666666665555554444444444444433
No 224
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=68.72 E-value=33 Score=31.61 Aligned_cols=48 Identities=25% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.|+=.+|.+.+....|...|..|++.|+.+...+...-+..+..++.|
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466678888888888888888888888866666665555555555555
No 225
>PHA02562 46 endonuclease subunit; Provisional
Probab=68.71 E-value=1.1e+02 Score=29.19 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=4.6
Q ss_pred hHHHHHHHHhh
Q 048456 110 PKRMKRLLANR 120 (211)
Q Consensus 110 ~KR~KR~l~NR 120 (211)
+.++-.+..|+
T Consensus 298 ~~~~~~l~d~i 308 (562)
T PHA02562 298 PDRITKIKDKL 308 (562)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 226
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=68.58 E-value=1.9e+02 Score=31.86 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.+.+....++.....+...|.++++.|+..|..+++
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555666666666666665533
No 227
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.57 E-value=31 Score=35.87 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKV-------------------LGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~-------------------L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
|+.||+.|+.++..|.+++.+ |..-|-.|..+|+......-+....||.|-+.|+.+
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 667777777777777665433 333344555555544333333333445555544433
No 228
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.52 E-value=1.7e+02 Score=32.16 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+...+.+-+.+..-+.+-- +..+.++|.+|..|.....+|..++..+.-.++.+..+-..|+.++..++..
T Consensus 779 ~v~~le~~l~~~~~~~~~~---~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQH---QEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544443332 2334456777777777788888888877777777777777777777777665
No 229
>PF14282 FlxA: FlxA-like protein
Probab=68.51 E-value=38 Score=26.23 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPL----VSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~----l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
|..|+.++..|+.+...|..- -..-+.+...|..+-..|..+|..+.
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444441 12223333334444444444444443
No 230
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.40 E-value=86 Score=29.16 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 125 RSRLRNLAYMEKLKKEI---DNEEA----RLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 125 rSR~RKk~yieeLE~kv---~~L~~----en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
.+.++.+.|+++.|.-- ..|+. --..|...+..+..+...|++||..|...|..=.
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EK 83 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEK 83 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhH
Confidence 46778889998876532 22332 2245667777888888999999999998775443
No 231
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.23 E-value=98 Score=28.39 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=49.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------H
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYET-----------------------------E 161 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~-----------------------------~ 161 (211)
|+.--+.+.+..++.-..|-..-...||.-|..|+..|..|......+.. .
T Consensus 50 Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~ 129 (309)
T PF09728_consen 50 KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSER 129 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44444555666666666666666667777777777777766643322211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 162 CKVLGKMNREMKEMMEALENETAAKEAEFQ 191 (211)
Q Consensus 162 ~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e 191 (211)
...+..+|..|+.++..+-.+-.+++.+++
T Consensus 130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~~ 159 (309)
T PF09728_consen 130 NIKLREENEELREKLKSLIEQYELREEHFE 159 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888777777666665443
No 232
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=67.69 E-value=80 Score=27.15 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 188 AEFQALMEEKEALGLAY 204 (211)
Q Consensus 188 a~~e~L~~Ei~rL~~~~ 204 (211)
.....|..||+.|..-.
T Consensus 171 ~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567777777776544
No 233
>PHA03155 hypothetical protein; Provisional
Probab=67.63 E-value=7.6 Score=31.19 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSH 157 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~ 157 (211)
+++|+.++..|+.||..|..++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688888999888888888888743
No 234
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=67.55 E-value=6.9 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
..|-..|+.+..++..++.+...|..||-.|+.++
T Consensus 10 ~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 10 RELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34555666677777777777777777887777764
No 235
>PRK02224 chromosome segregation protein; Provisional
Probab=67.14 E-value=1.5e+02 Score=30.18 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVS 156 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~ 156 (211)
+.+|+.++..++........++.
T Consensus 511 l~~l~~~~~~l~~~~~~~~e~le 533 (880)
T PRK02224 511 IERLEERREDLEELIAERRETIE 533 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333
No 236
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.95 E-value=1.1e+02 Score=28.38 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNL-AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETA--- 184 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk-~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~--- 184 (211)
+.+..|.-+.+..++.+++...+ +-+.++-.+++.|..+-..+..+|..+...-..+...-+.|......+.....
T Consensus 24 e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~ 103 (294)
T COG1340 24 ELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHH--HHHHhhhc
Q 048456 185 AKEAEFQALMEEKEAL--GLAYRLLG 208 (211)
Q Consensus 185 ~~~a~~e~L~~Ei~rL--~~~~~~~~ 208 (211)
+.-.-...+..+|++| .+.|.+++
T Consensus 104 ~~~~~~~~ler~i~~Le~~~~T~~L~ 129 (294)
T COG1340 104 LGGRSIKSLEREIERLEKKQQTSVLT 129 (294)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCC
No 237
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=66.75 E-value=47 Score=30.03 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 164 VLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 164 ~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
.+..||+.||.++..+.+.. ...+.|++|=++|+.++
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~----~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 70 DLALENEELKKELAELEQLL----EEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 44455666666655554433 23444555555555554
No 238
>PHA03011 hypothetical protein; Provisional
Probab=66.70 E-value=51 Score=26.25 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 048456 137 LKKEIDNE 144 (211)
Q Consensus 137 LE~kv~~L 144 (211)
|-.+...|
T Consensus 69 L~~qYN~L 76 (120)
T PHA03011 69 LIAQYNEL 76 (120)
T ss_pred HHHHHHHH
Confidence 33333333
No 239
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.63 E-value=61 Score=29.24 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 119 NRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKE 198 (211)
Q Consensus 119 NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~ 198 (211)
+=..|+-.-.+|..+...=+.- .|..++..+.+++..|+ +|-..|...+..... ........+..+++
T Consensus 32 ~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~~~~L~-------~ev~~~~~~~~s~~~---~~~t~~~~ie~~l~ 99 (247)
T COG3879 32 GVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKKVNTLA-------AEVEDLENKLDSVRR---SVLTDDAALEDRLE 99 (247)
T ss_pred HHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---hHHhHHHHHHHHHH
Confidence 4444444444444433322222 44444444444444444 333333333333331 11123344555788
Q ss_pred HHHHHHhhhc
Q 048456 199 ALGLAYRLLG 208 (211)
Q Consensus 199 rL~~~~~~~~ 208 (211)
.|++.+|..+
T Consensus 100 ~l~~~aG~v~ 109 (247)
T COG3879 100 KLRMLAGSVP 109 (247)
T ss_pred HHHHHhccCC
Confidence 8888887653
No 240
>PRK00736 hypothetical protein; Provisional
Probab=66.61 E-value=45 Score=23.94 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+|.++..|+...+.....|..|......-..+...|+.+|..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766666666544443333334444443333
No 241
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=66.49 E-value=69 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
..||+.+..-..-..+|..+|..|+++...|.-.+.++..+|+.+.+
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555555554455566666666666666666666665555555533
No 242
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.48 E-value=1.5e+02 Score=30.48 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
++++.+|..|+.+......++..++++...|......|..+++.+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544555555554444444444444444433
No 243
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=65.45 E-value=25 Score=32.18 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVS-------HYETECKVLGKMNREMKEMMEAL--ENETAAKEAEFQ 191 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~-------~L~~~~~~L~~EN~~Lk~~L~~L--~~q~~~~~a~~e 191 (211)
-+-++|.+|+.|+.-|..|.+++. .+-..-..+..|-..+..+|..| +|+.+|..+..+
T Consensus 218 Rmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~ 285 (311)
T PF04642_consen 218 RMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAARTE 285 (311)
T ss_pred HHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 356899999999999999999983 22233345566666777777777 344455555444
No 244
>PF15058 Speriolin_N: Speriolin N terminus
Probab=65.27 E-value=13 Score=32.48 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 157 HYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 157 ~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
-|.++...|..||.+||.++.-+.....++.++-|+...-.
T Consensus 9 GlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~ 49 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPS 49 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34555666779999999999999888888888666655443
No 245
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.19 E-value=99 Score=27.34 Aligned_cols=80 Identities=26% Similarity=0.230 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 122 SAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHY--------------ETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 122 SAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L--------------~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
.|+..=.+...-+..|+.+.+.++.+-..|......+ ..+...|..+...+...+..|.....-++
T Consensus 23 ~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke 102 (246)
T PF00769_consen 23 RAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKE 102 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555444444444433333 33333344444445555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 048456 188 AEFQALMEEKEALG 201 (211)
Q Consensus 188 a~~e~L~~Ei~rL~ 201 (211)
.....|+.++...+
T Consensus 103 ~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 103 EEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666654443
No 246
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.82 E-value=94 Score=26.93 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
+..+-..+..+..||..|+..|..+-++....++....|.+.-+.|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888888877777777777777766643
No 247
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.51 E-value=1e+02 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.-..++..++..|.++......+-+.+.+.+..|+..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666666666666666544
No 248
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.33 E-value=1.3e+02 Score=28.36 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-
Q 048456 113 MKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE-TAAKEAEF- 190 (211)
Q Consensus 113 ~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q-~~~~~a~~- 190 (211)
+.++-..-..+..--..+-.||.. ++..|-.+-.....+++.++.+|..+.....++...|..+..+ ..++....
T Consensus 243 L~kl~~~i~~~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 243 LDKLQQDISKTLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------------HHHHHHHHHHHHHHhhh
Q 048456 191 ------------------QALMEEKEALGLAYRLL 207 (211)
Q Consensus 191 ------------------e~L~~Ei~rL~~~~~~~ 207 (211)
..|+.||..|-+..|.+
T Consensus 320 rg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 320 RGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhee
No 249
>PHA03162 hypothetical protein; Provisional
Probab=64.22 E-value=4.8 Score=33.10 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLV 155 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l 155 (211)
++.-+++|+.++..|+.||..|..+|
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999999988
No 250
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.10 E-value=1.5e+02 Score=28.97 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---H
Q 048456 119 NRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLG-------KMNREMKEMMEALENETAAKE---A 188 (211)
Q Consensus 119 NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~-------~EN~~Lk~~L~~L~~q~~~~~---a 188 (211)
|--+|++--.|-.+.-.+|..++..|-.+-..|.++...|..+...|. .+-..|+.+-..++++..-.. -
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~ 210 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRAN 210 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433333333 222233333333333331111 1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 048456 189 EFQALMEEKEALGLAYRL 206 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~~ 206 (211)
-.+.+.+|+.++..+..+
T Consensus 211 a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 211 AAQARTEELARRAAAAQQ 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 236677777777666544
No 251
>smart00340 HALZ homeobox associated leucin zipper.
Probab=63.95 E-value=17 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.+.|.+-+..|..||+.|+..++.|..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777788888888887777653
No 252
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.72 E-value=1.3e+02 Score=31.03 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKV 164 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~ 164 (211)
|.+||..++++..+.......+..|...+..
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~ 66 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLSQLNQE 66 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444444433333333333
No 253
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.39 E-value=44 Score=32.72 Aligned_cols=23 Identities=22% Similarity=-0.000 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 048456 188 AEFQALMEEKEALGLAYRLLGEG 210 (211)
Q Consensus 188 a~~e~L~~Ei~rL~~~~~~~~~~ 210 (211)
..+.+|+.+|-+|+.++..+.++
T Consensus 311 eentelRs~~arlksl~dklaee 333 (502)
T KOG0982|consen 311 EENTELRSLIARLKSLADKLAEE 333 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677777777777777666554
No 254
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=63.07 E-value=1.1e+02 Score=28.87 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 143 NEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 143 ~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
...+.-..|..+++.|.+++..+..+-++|+.+-+.+..-.--+-+....++.|++.+++-.-..
T Consensus 263 kI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 263 KIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777777888888888888888887766665555555556666777777776665433
No 255
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.98 E-value=70 Score=25.49 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
..|+..|.. |+.+......+...+..|-+.+-.+..+-..+|.++...-.+.......+..+..+.+.+-..+.+
T Consensus 20 ~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~ 94 (150)
T PF07200_consen 20 DAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSP 94 (150)
T ss_dssp HHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
No 256
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=62.40 E-value=75 Score=25.02 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
|..+...-...+..+++++..|.=.|..|..++..|+.
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444433
No 257
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=62.27 E-value=1.6e+02 Score=28.88 Aligned_cols=90 Identities=21% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 048456 111 KRMKRLLANRVSAQRSR----LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET--- 183 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR----~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~--- 183 (211)
+..+.-+..|+..-..| .+|...++..|..+...+.+.......+..+..+...+..+...--.++..|..+.
T Consensus 72 ~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~ 151 (514)
T TIGR03319 72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKE 151 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 184 AAKEAEFQALMEEKEAL 200 (211)
Q Consensus 184 ~~~~a~~e~L~~Ei~rL 200 (211)
.|.+.+.+.++.|+..+
T Consensus 152 ~l~~~~~~~~~~~~~~~ 168 (514)
T TIGR03319 152 ILLEEVEEEARHEAAKL 168 (514)
T ss_pred HHHHHHHHHHHHHHHHH
No 258
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=62.24 E-value=66 Score=29.67 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPL-----VSHYETECK-------VLGKMNREMKEMMEALENET-------AAKEAEFQALMEEK 197 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~-----l~~L~~~~~-------~L~~EN~~Lk~~L~~L~~q~-------~~~~a~~e~L~~Ei 197 (211)
|-.+|..|..||.+|-.+ |+.|.-+.. +|..-...|-..|..|...+ .|..-..+.-++||
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 445677788888777533 334443333 33333334444455543332 22222334566788
Q ss_pred HHHHHHHhhhc
Q 048456 198 EALGLAYRLLG 208 (211)
Q Consensus 198 ~rL~~~~~~~~ 208 (211)
++|+.-..+++
T Consensus 295 q~l~k~~~q~s 305 (330)
T KOG2991|consen 295 QRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHHHH
Confidence 88877666654
No 259
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=62.20 E-value=16 Score=26.19 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLP 153 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~ 153 (211)
.|.+|+.++..|+.||.-|+.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555543
No 260
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=61.57 E-value=60 Score=28.11 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=11.5
Q ss_pred cccCCcccchhh-hhhhhhhhhhhh
Q 048456 7 SFSSSSGISMEN-LASLRRSASDSL 30 (211)
Q Consensus 7 ~~~~~~~~~~~~-~~~~rr~~sd~~ 30 (211)
.+-|=-|+|=++ -++.|-++--.|
T Consensus 8 ~vDaLPYiD~~~~~~~~~~~a~~lI 32 (221)
T PF05700_consen 8 LVDALPYIDPDYDTPEERQAAEALI 32 (221)
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHH
Confidence 344445666555 445444444333
No 261
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.48 E-value=69 Score=24.26 Aligned_cols=75 Identities=9% Similarity=-0.047 Sum_probs=60.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 048456 113 MKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL-ENETAAKE 187 (211)
Q Consensus 113 ~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L-~~q~~~~~ 187 (211)
+.+|-..+......=..|..-+..||.++..|..|.+.-..+.-.+.+....|.+|+..|+..+..= +-...+++
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456666777777788888889999999999999999999999999999999999999999876544 22334444
No 262
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.39 E-value=2.5e+02 Score=30.62 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 122 SAQRSRLRNLAYMEKL 137 (211)
Q Consensus 122 SAqrSR~RKk~yieeL 137 (211)
+.+....+++.-|..|
T Consensus 847 ~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 847 LNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 263
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=61.38 E-value=54 Score=31.57 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 121 VSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 121 eSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
++|.--|+|-.+--...|..+..+..|...|++++.........|..|+..|+..+..++-.
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~ 288 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEAD 288 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45666666666666677777777777777778777777777777777777777776666544
No 264
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=61.25 E-value=87 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.027 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLV 155 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l 155 (211)
+...|+.....++.++..|....
T Consensus 28 ~~~~l~~~~~~l~~e~~~l~~~~ 50 (136)
T PF04871_consen 28 AESSLEQENKRLEAEEKELKEAE 50 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555433
No 265
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.25 E-value=96 Score=25.85 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 167 KMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 167 ~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
.++..+...++.+..+..-.+...++|++.++.|..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555544455566667766666643
No 266
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=60.93 E-value=58 Score=28.51 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
.||..|...|..++.++..|..||..|+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777888887777777788877776
No 267
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=60.74 E-value=43 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
+.+.+|+.++..++.+|..|..++..|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555544
No 268
>PF14645 Chibby: Chibby family
Probab=60.43 E-value=38 Score=26.91 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~ 159 (211)
|..+.+.|+.||+-|.-++..|.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLL 98 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555553
No 269
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=60.40 E-value=71 Score=24.05 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048456 163 KVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 163 ~~L~~EN~~Lk~~L~~L~~ 181 (211)
..|..+-..|+.++..++.
T Consensus 70 ~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 270
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=60.25 E-value=1.4e+02 Score=27.50 Aligned_cols=16 Identities=0% Similarity=0.048 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARL 148 (211)
Q Consensus 133 yieeLE~kv~~L~~en 148 (211)
-+.++|.++..-+..|
T Consensus 85 ~l~evEekyrkAMv~n 100 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSN 100 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444454444433333
No 271
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.22 E-value=1.6e+02 Score=28.07 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANR--VSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETE---CKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 109 d~KR~KR~l~NR--eSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~---~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
++..++..+++| ..--..=..--...-+|..++..|+.+-+.+..++..+... ...|..+-+.|+.++..++.+.
T Consensus 10 n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 10 NPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred CHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHH
Q 048456 184 -AAKEAEFQAL 193 (211)
Q Consensus 184 -~~~~a~~e~L 193 (211)
.+.+.+++.+
T Consensus 90 ~~~~~~~~~~~ 100 (425)
T PRK05431 90 DELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHH
No 272
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=60.21 E-value=82 Score=24.72 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=38.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.+.+|++-.+..+-.. |+.-+=.--...-.....+..+++.++.++..|..+|..|+.++..|...
T Consensus 21 ~~~~~~l~~~l~~~l~------~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 21 VRRRRILTLVLLALLA------LFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444455555554433 33322223333344455556666677777777778888888887777776
No 273
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=60.16 E-value=60 Score=30.86 Aligned_cols=24 Identities=13% Similarity=-0.090 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVL 165 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L 165 (211)
..|+.||..|+++++.|..+...|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444444
No 274
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.85 E-value=1.8e+02 Score=31.92 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+-+..||.+++....+..++..-.+....+...+..|+..|...+...+..
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~ 462 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERE 462 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555556666666666666666555444
No 275
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.84 E-value=1.4e+02 Score=27.65 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETE--------------CKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~--------------~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+-|.++++=+.|+.+|+.|+..++.. ..+...|.++||+-+.++..-
T Consensus 79 es~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 79 ESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555554432 234556788888888887543
No 276
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=59.61 E-value=31 Score=33.75 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
+.|-.+|..|..+|.-|...+.++.-.|..+..||+-|+.-
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~A 86 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLA 86 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhh
Confidence 45566666777777777777777777777777777776643
No 277
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.42 E-value=1.3e+02 Score=26.66 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAK----EAEFQALMEEKEALGLAY 204 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~----~a~~e~L~~Ei~rL~~~~ 204 (211)
+..+..++..+..++..|+.+...|...|..|..++..++...... .+....+..||..|+..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 3445666666777777777777777777777777777665543221 233344555665555444
No 278
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=59.28 E-value=68 Score=23.48 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 145 EARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 145 ~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
...-.......+.|+..+.....+|..|..++..|.+++
T Consensus 20 ~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 20 EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445556666666666666654
No 279
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.21 E-value=1.7e+02 Score=28.93 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMK 173 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk 173 (211)
|...+..+....++..++..++.+...+..+|..|.
T Consensus 374 e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~ 409 (493)
T KOG0804|consen 374 EAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333334444333
No 280
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=58.80 E-value=1.8e+02 Score=28.23 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=43.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 118 ANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 118 ~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.++...++-=.++..-|.+-..+.+.|+.+...+...+..+..+......++..++.++..++...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 444555555555566666666666667777777777777777777777777777777777666543
No 281
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=58.75 E-value=59 Score=27.86 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
=|.=.|+++..|+.+|..|+.++..|... ..+|..+-.++..+.-..
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~----Ar~Ne~~~~~~~~l~l~L 87 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIEN----ARENEAIFQRLHRLVLAL 87 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888887643 467777777777776554
No 282
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.71 E-value=48 Score=24.96 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 048456 167 KMNREMK 173 (211)
Q Consensus 167 ~EN~~Lk 173 (211)
.+|..|+
T Consensus 89 ~en~~L~ 95 (100)
T PF01486_consen 89 EENNQLR 95 (100)
T ss_pred HHHHHHH
Confidence 3333333
No 283
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.56 E-value=1.8e+02 Score=30.79 Aligned_cols=62 Identities=15% Similarity=-0.019 Sum_probs=44.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
+..+-..=.--+.+-...++.|-.+++.|+.+|.+|.+++.....++..|..++.-||.+|.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444445555677777788888888888888888888888888888888888776
No 284
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.17 E-value=92 Score=24.68 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 114 KRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 114 KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..+-..+.....-+.........|+..-.....+-..|..++..+...+..|...|.-|-.+|+.+
T Consensus 66 ~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 66 EELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 285
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.08 E-value=38 Score=24.92 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGK 167 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~ 167 (211)
...+..|+.+...++.+...|..++..+..+...+..
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666555444443
No 286
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=57.93 E-value=38 Score=30.67 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
+..+..++..+-+.|..++.++... ..+...|+.||..|+.-|.
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhC
Confidence 4555566666666666555544443 3345577888888887654
No 287
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=57.80 E-value=1.4e+02 Score=26.70 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH---HHHHHHHHHH
Q 048456 127 RLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL------ENETAAKE---AEFQALMEEK 197 (211)
Q Consensus 127 R~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L------~~q~~~~~---a~~e~L~~Ei 197 (211)
+..++...+.++...+.++.+...+..++..|.+. +..+...+......+ ++...+.+ ...+.|.+||
T Consensus 217 e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ek---me~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei 293 (297)
T PF02841_consen 217 EKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEK---MEEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEI 293 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555566666666555433 222222222222222 12222333 3457788888
Q ss_pred HHHH
Q 048456 198 EALG 201 (211)
Q Consensus 198 ~rL~ 201 (211)
+.|+
T Consensus 294 ~~L~ 297 (297)
T PF02841_consen 294 QDLQ 297 (297)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 8774
No 288
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=57.67 E-value=45 Score=33.96 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAK 186 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~ 186 (211)
.+|-.+|.+|..|+.-|..++...++-...|...+.+|...|..+.+++++.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666666666666555444
No 289
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.44 E-value=1.8e+02 Score=30.59 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLG 166 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~ 166 (211)
.+.|.......|+..|.+|..-++.+..++..+.
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~ 475 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLR 475 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666655554444433
No 290
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.43 E-value=1.8e+02 Score=29.43 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSH----------------------------YETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~----------------------------L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
-+..|+..+..|+.++..|..+|.. -......|..||..|+.++..|+
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466666666666666666666654 12446778889999999997764
No 291
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=57.41 E-value=86 Score=24.05 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREM 172 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~L 172 (211)
|+.|-..-|.+|..|+.++..|..++..|+.+...-..|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888888888876654444444433
No 292
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=57.37 E-value=1.1e+02 Score=30.26 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=45.4
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHH
Q 048456 137 LKKEIDNEEAR----------LSVLLPLVSHYETECKVLGKMNREMKEMMEALEN-----ETAAKEA--EFQALMEEKEA 199 (211)
Q Consensus 137 LE~kv~~L~~e----------n~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~-----q~~~~~a--~~e~L~~Ei~r 199 (211)
||.+|+.|+.. +..|...|..|-.....+.-|...+...|+.|.. +.++++. ..+.|.-|+..
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56667766653 4567777777777766666676666666666632 3345443 45778888888
Q ss_pred HHHHHhh
Q 048456 200 LGLAYRL 206 (211)
Q Consensus 200 L~~~~~~ 206 (211)
++..+..
T Consensus 423 ~k~nyv~ 429 (527)
T PF15066_consen 423 IKANYVH 429 (527)
T ss_pred HhhhHHH
Confidence 8776644
No 293
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.32 E-value=1.1e+02 Score=25.42 Aligned_cols=7 Identities=14% Similarity=0.183 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 048456 169 NREMKEM 175 (211)
Q Consensus 169 N~~Lk~~ 175 (211)
...|+.|
T Consensus 177 ~~~LkkQ 183 (192)
T PF05529_consen 177 IEALKKQ 183 (192)
T ss_pred HHHHHHH
Confidence 3333333
No 294
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=56.95 E-value=1.8e+02 Score=28.66 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
.+..++..+.+++..|..|..++..|.+.
T Consensus 311 ~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 311 NSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555555566666666666666555
No 295
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=56.93 E-value=19 Score=29.11 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
++.|..+...|..||+.||.+|..-.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34444555556799999999986544
No 296
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.91 E-value=2.4e+02 Score=30.53 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 129 RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
-+...|++||.++..++.+...+.+........+..|..+-..|+..|+.-..+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~e 498 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKE 498 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999888888877777778888877777777665544
No 297
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=56.86 E-value=1.7e+02 Score=27.41 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
.|..++.+|+.+|..|...+..+..++
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~ql 167 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQL 167 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333333
No 298
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=56.73 E-value=1.6e+02 Score=27.63 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=42.0
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEAR-----------LSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~e-----------n~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
.-.+.++++++|+..-.+=.||...+.-=+..+.+|..- ......+|..|+.++..|..+-..+..+|+
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667899999998888888866554445555555431 111125555555555555554444444444
Q ss_pred HHHHH
Q 048456 178 ALENE 182 (211)
Q Consensus 178 ~L~~q 182 (211)
.+...
T Consensus 200 ~~~k~ 204 (323)
T PF08537_consen 200 ITKKD 204 (323)
T ss_pred HHHHH
Confidence 44433
No 299
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=56.53 E-value=2e+02 Score=28.10 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
...|..+-..+.+.+...+-+...|..||.+|..+
T Consensus 36 ~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 36 LVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 300
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=56.36 E-value=1.7e+02 Score=29.59 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAK 186 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~ 186 (211)
|+.+.+|+.....|..+|.+|...+..-+.-...|...-..|...|..+......+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888888888877777666555555555555555555554444444
No 301
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.82 E-value=86 Score=23.58 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=35.5
Q ss_pred HhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 048456 118 ANRVSAQRSRLRNL------AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGK---MNREMKEMMEALENETAAKEA 188 (211)
Q Consensus 118 ~NReSAqrSR~RKk------~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~---EN~~Lk~~L~~L~~q~~~~~a 188 (211)
.|.+..+.+=.++. ..+-+|-.+...+..+...|..+...+..+...+.. +-..|+.++..+..+..-.+.
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 36665555544443 222333333333444444444444433333333333 234455555555555444444
Q ss_pred HHHHHHHHHHH
Q 048456 189 EFQALMEEKEA 199 (211)
Q Consensus 189 ~~e~L~~Ei~r 199 (211)
....+.++++.
T Consensus 89 ~~~~~e~~l~~ 99 (108)
T PF02403_consen 89 QLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 302
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=55.70 E-value=1.1e+02 Score=31.30 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVS-------HYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~-------~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
.+=++|..|-.||.+|...-. .|-.+..+|..||..|+-.+.+..+-..-.+..+..|.+||.+++.-+
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666654433 344567778889999999988887766555567777889988887543
No 303
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.40 E-value=1.1e+02 Score=24.77 Aligned_cols=13 Identities=0% Similarity=0.327 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 048456 167 KMNREMKEMMEAL 179 (211)
Q Consensus 167 ~EN~~Lk~~L~~L 179 (211)
.-.++|.+||+.+
T Consensus 61 ~tKkhLsqRId~v 73 (126)
T PF07889_consen 61 STKKHLSQRIDRV 73 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 304
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=55.36 E-value=1.7e+02 Score=26.98 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=24.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.+.-|+--.....--..|-.+||.++.++++.|..|..++..|.
T Consensus 29 f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~ 72 (333)
T KOG1853|consen 29 FLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLT 72 (333)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455666677777777666666666655554
No 305
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.18 E-value=1.3e+02 Score=25.45 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
+..|+..+..+......|...+..+...+..+..+-..|+.+.....-+..+.+
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~ 153 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555556655555556666666665555555555444
No 306
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=55.02 E-value=72 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 171 EMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 171 ~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
-|..++.+|+.+....+-.++.|+.+|
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333334444444
No 307
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=54.92 E-value=1.4e+02 Score=25.89 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.+-.||.+|..++.....+-..+..-+.+.-.+..+-..|+++|.+|+.++
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
Confidence 356677777777666655555554434444555566666666766666654
No 308
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.87 E-value=3.1e+02 Score=29.69 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 123 AQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 123 AqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
|...-.+.....+++|..++....+...+...++..++++.........|+.....++.
T Consensus 612 ~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 670 (1201)
T PF12128_consen 612 AEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQ 670 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333334444577777777777777777777777776666666666666555555533
No 309
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.83 E-value=1.6e+02 Score=28.16 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVS--------------HYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEE 196 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~--------------~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~E 196 (211)
..++|+..|..|..++. .|+.-...+..||+.|..+|+.+.+++.=++-....|-.|
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 34455555555555543 4444556677899999999999988875555443333333
No 310
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.73 E-value=1.7e+02 Score=30.32 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=5.9
Q ss_pred ccccCCCCCc
Q 048456 38 VIKIGVGDNF 47 (211)
Q Consensus 38 ~~~~g~g~~~ 47 (211)
+|.+|.|++.
T Consensus 413 lDE~~~GtDp 422 (782)
T PRK00409 413 FDELGAGTDP 422 (782)
T ss_pred ecCCCCCCCH
Confidence 4456766653
No 311
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.60 E-value=1.7e+02 Score=27.85 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 120 RVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 120 ReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
=.||-+-+.|.. .|.++..++.+.+.|..+-..|..-.+.|..+-..|++++..|..+.
T Consensus 211 visa~~eklR~r-----~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 211 VISAVREKLRRR-----REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 355555444432 35556666666666666666665555555555555555555554443
No 312
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.51 E-value=1.8e+02 Score=27.01 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
|......-..|-..+++++.+|+.-----...+|.+.+|++.|
T Consensus 138 L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 138 LGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3333333345555666666666554333345667777777665
No 313
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.36 E-value=2.7e+02 Score=28.84 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=5.3
Q ss_pred ccccCCCCC
Q 048456 38 VIKIGVGDN 46 (211)
Q Consensus 38 ~~~~g~g~~ 46 (211)
+|.+|.|++
T Consensus 408 lDE~g~GtD 416 (771)
T TIGR01069 408 FDELGAGTD 416 (771)
T ss_pred ecCCCCCCC
Confidence 445666655
No 314
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=54.08 E-value=1.3e+02 Score=24.95 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 048456 168 MNREMKEMMEALEN 181 (211)
Q Consensus 168 EN~~Lk~~L~~L~~ 181 (211)
.|..|+.++..|+.
T Consensus 52 d~eeLk~~i~~lq~ 65 (155)
T PF06810_consen 52 DNEELKKQIEELQA 65 (155)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 315
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=53.74 E-value=65 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
....+..++.++..++.+|..|..++..|.
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566677777777777777776666653
No 316
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=53.69 E-value=55 Score=28.57 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 048456 188 AEFQALMEEKEALGLAYRLLG 208 (211)
Q Consensus 188 a~~e~L~~Ei~rL~~~~~~~~ 208 (211)
..+..|..||++||+++.-++
T Consensus 191 tr~g~l~~El~rmR~LlarV~ 211 (213)
T PF13093_consen 191 TRDGELEAELERMRMLLARVA 211 (213)
T ss_pred CCCchHHHHHHHHHHHHHHHc
Confidence 355789999999999987664
No 317
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=53.37 E-value=2.4e+02 Score=29.51 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 162 CKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 162 ~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
+..+..|-..+...|..|....-+.+.....|...|+.|.
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443
No 318
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.21 E-value=3.3e+02 Score=29.61 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-----HHHH
Q 048456 120 RVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL--ENETAAKEA-----EFQA 192 (211)
Q Consensus 120 ReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L--~~q~~~~~a-----~~e~ 192 (211)
=.+-.....-.+.-++++|......-.+..+|...+....-....+.+++..+++.+..+ .++..|++- ..+.
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~ 485 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN 485 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666677777777777777777777777766666777777888888887777 334455552 4456
Q ss_pred HHHHHHHHHHHH
Q 048456 193 LMEEKEALGLAY 204 (211)
Q Consensus 193 L~~Ei~rL~~~~ 204 (211)
++.+|.+-...+
T Consensus 486 ~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 486 LEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 319
>PHA03162 hypothetical protein; Provisional
Probab=52.74 E-value=19 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
++.|..+...|..||+.||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556679999999998
No 320
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=52.48 E-value=1.4e+02 Score=25.08 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 124 QRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 124 qrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
...++.=+..|+.|-.++..-+.+...+...|..+. ..|....+.|+.....+.....=..+..+.|+++|+.++.
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~---~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~ 177 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFK---DKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNE 177 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 334444556666666666666666666666655554 3455666667766666665554455677888888887754
No 321
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=52.46 E-value=1.2e+02 Score=31.25 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 122 SAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 122 SAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
-|.++...=+..++..+.++.+++...+.+...+..+......|..|+..|+..+..+........ -.+.|.+|+...|
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s-~d~~L~EElk~yK 641 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGAS-ADEVLAEELKEYK 641 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555555555555544332000 1355666766665
Q ss_pred HH
Q 048456 202 LA 203 (211)
Q Consensus 202 ~~ 203 (211)
..
T Consensus 642 ~~ 643 (698)
T KOG0978|consen 642 EL 643 (698)
T ss_pred hc
Confidence 43
No 322
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=52.45 E-value=1.9e+02 Score=26.81 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYR 205 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~ 205 (211)
|.+||.++.--...+.+|+..-..|-....+|..+-.-...-+--|+++..-.+-.++.|+++.+.+..+.|
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~ 309 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVG 309 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666666666666655555555554444444444555555555567889999888887765
No 323
>PHA03155 hypothetical protein; Provisional
Probab=52.28 E-value=20 Score=28.79 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
++.|..+.+.|..||+.||.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555556667999999999854
No 324
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=52.23 E-value=65 Score=27.81 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
|++-|.++..-|.+=+.|..+||.+=..|....+-+..+|+.|+..+
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~ 164 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKN 164 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666777777777777666666666666665443
No 325
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=52.09 E-value=2.6e+02 Score=28.08 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET---AAKEAEFQALMEEKEALG 201 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~---~~~~a~~e~L~~Ei~rL~ 201 (211)
-.-+.+.|.+|..|.........++..+......-..+-..++..+..++.+. +++-+-+..|.+|++.|-
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll 95 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLL 95 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888777777788888888888888775 444456678888887663
No 326
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.07 E-value=50 Score=32.37 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 125 RSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 125 rSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
|-+.|+|+--++=.++.+.. +..|..++. .-.+||++|+.+++.|+.+ |..|-.-+..|....
T Consensus 254 RRKIrNK~SAQESRrkKkeY---id~LE~rv~-------~~taeNqeL~kkV~~Le~~-------N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 254 RRKIRNKRSAQESRRKKKEY---IDGLESRVS-------AFTAENQELQKKVEELELS-------NRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHhhhhhHHHHHhHhhH---HHHHhhhhh-------hcccCcHHHHHHHHHHhhc-------cHHHHHHHHHHHHHH
Confidence 34556666555555554433 333444444 4469999999999999874 455555555565555
Q ss_pred hhhc
Q 048456 205 RLLG 208 (211)
Q Consensus 205 ~~~~ 208 (211)
.+..
T Consensus 317 ~q~a 320 (472)
T KOG0709|consen 317 IQVA 320 (472)
T ss_pred hhcc
Confidence 5543
No 327
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=52.03 E-value=59 Score=26.54 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
..|..++.|+.+...=-.+|..|..+...+...|..|..+
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444444444444444444444444445555555443
No 328
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.85 E-value=2.1e+02 Score=26.79 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 121 VSAQRSRLRNLAYMEKLKKEIDNEEARLS---------------------VLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 121 eSAqrSR~RKk~yieeLE~kv~~L~~en~---------------------~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+..+.-|..=|.-++.|..+.+.|+.... .|..-+.....++..|..|...|++++..+
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556777766666655444 444566777778888888888888888888
Q ss_pred HHHHH
Q 048456 180 ENETA 184 (211)
Q Consensus 180 ~~q~~ 184 (211)
+.+..
T Consensus 99 qGD~K 103 (319)
T PF09789_consen 99 QGDIK 103 (319)
T ss_pred hchHH
Confidence 77753
No 329
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=51.79 E-value=3.7e+02 Score=29.67 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+++..++..++.+......++..+++....+..+-..|+.++..|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 279 DQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444444444444
No 330
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=51.77 E-value=2.6e+02 Score=27.97 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEF 190 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~ 190 (211)
...+..++..|..|..-+..+..++.....+...+..+-..|+.+.+.++.+..+-.++.
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~ 103 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFL 103 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999999998888876666543
No 331
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=51.66 E-value=39 Score=27.18 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 152 LPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
+.+|..|...+..|..||.-||.
T Consensus 73 k~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 73 KEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444566666653
No 332
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.63 E-value=86 Score=22.35 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.++..++..++.....+..++..+++....+..+-..+..+|..+....
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666666555555555556666666665443
No 333
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=51.17 E-value=9.3 Score=32.17 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 048456 193 LMEEKEALGL 202 (211)
Q Consensus 193 L~~Ei~rL~~ 202 (211)
|.+|+++|++
T Consensus 62 Lpee~~~Lqf 71 (181)
T PF09311_consen 62 LPEEVKHLQF 71 (181)
T ss_dssp ----------
T ss_pred CcchHHHHHH
Confidence 4444444443
No 334
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=50.97 E-value=1.3e+02 Score=24.20 Aligned_cols=40 Identities=3% Similarity=0.099 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
++.++..++..|+........++..+. ..+.+|..++-.+
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r-------~r~~~L~hR~l~v 91 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEAR-------RRHQELSHRLLRV 91 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344555555555444444455554444 4455555554444
No 335
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=50.96 E-value=25 Score=30.31 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=31.3
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+-.|.+|-.+++ .+..++.+.+|+.+|..|+.+..++...+..|-
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444 555677888999999988887777777666664
No 336
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.88 E-value=1.5e+02 Score=30.42 Aligned_cols=46 Identities=7% Similarity=0.004 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
.-+.+||.+-+.|+.+++++...++.+++..-.-..|-..||-.++
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 3467888888889888888888888887666555555555554443
No 337
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.72 E-value=1.7e+02 Score=25.59 Aligned_cols=51 Identities=8% Similarity=0.175 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
++-|+++|+.++.........|...+.....-.......+.+|...+..+.
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslk 129 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLK 129 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 345667777777776666666665555444333333333334444444443
No 338
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.61 E-value=1.6e+02 Score=25.07 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 161 ECKVLGKMNREMKEMME 177 (211)
Q Consensus 161 ~~~~L~~EN~~Lk~~L~ 177 (211)
++..|..++..|+..+.
T Consensus 111 ~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 111 ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 339
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.31 E-value=2.2e+02 Score=26.71 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKV----LGKMNREMKEMMEALENE----TAAKEAEFQALMEEKEALGLA 203 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~----L~~EN~~Lk~~L~~L~~q----~~~~~a~~e~L~~Ei~rL~~~ 203 (211)
+-.++|+...++|+........+++.+...... +......|+.-...+.+- ........+.|+++|.+.+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 346788888888888888777766665443322 222233333322222221 112234556677777665543
Q ss_pred H
Q 048456 204 Y 204 (211)
Q Consensus 204 ~ 204 (211)
.
T Consensus 84 l 84 (330)
T PF07851_consen 84 L 84 (330)
T ss_pred H
Confidence 3
No 340
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.24 E-value=2.3e+02 Score=26.96 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
|-+.-+.|..-.++|.+.++.|+++...|.+.-..|+..
T Consensus 237 lkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 237 LKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333333344444444444444444444444444444443
No 341
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.82 E-value=57 Score=31.95 Aligned_cols=85 Identities=11% Similarity=0.101 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 048456 106 HGKGPKRMKRLLANRV---SAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMN------REMKEMM 176 (211)
Q Consensus 106 ~~~d~KR~KR~l~NRe---SAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN------~~Lk~~L 176 (211)
...+|...+++|-.=- .....-......+.++..+++.++.+...+..++..++.+..+|..-| .+|..+.
T Consensus 139 ~l~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~ 218 (563)
T TIGR00634 139 LLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQ 218 (563)
T ss_pred HhcCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHH
Confidence 3457777777664211 111111112233444555555555556666666666666666665533 3466666
Q ss_pred HHHHHHHHHHHHHH
Q 048456 177 EALENETAAKEAEF 190 (211)
Q Consensus 177 ~~L~~q~~~~~a~~ 190 (211)
..|.....|.+...
T Consensus 219 ~~L~n~e~i~~~~~ 232 (563)
T TIGR00634 219 QRLSNLEKLRELSQ 232 (563)
T ss_pred HHHhCHHHHHHHHH
Confidence 66666665555544
No 342
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=49.76 E-value=3.7e+02 Score=29.11 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.....++..+..+......++...+.....|..+...|+.++...
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 631 KQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA 675 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555554443
No 343
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=49.74 E-value=53 Score=30.83 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 160 TECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 160 ~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
+.+..|..||..|+.++..|+.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555554443
No 344
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=49.67 E-value=1.4e+02 Score=24.07 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 153 PLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 153 ~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
..+..+...-..|..+...|+.+++.|..+
T Consensus 93 ~~~eilr~~g~~l~~eEe~L~~~le~l~~~ 122 (141)
T PF13874_consen 93 RKQEILRNRGYALSPEEEELRKRLEALEAQ 122 (141)
T ss_dssp HHHHHHHH----------------------
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555443
No 345
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.65 E-value=1.9e+02 Score=29.17 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 187 EAEFQALMEEKEALGLA 203 (211)
Q Consensus 187 ~a~~e~L~~Ei~rL~~~ 203 (211)
+-.++.|+.++..|+..
T Consensus 307 EeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 346
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=49.49 E-value=1.8e+02 Score=25.36 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 161 ECKVLGKMNREMKEMM 176 (211)
Q Consensus 161 ~~~~L~~EN~~Lk~~L 176 (211)
+.+.|..|-...+.+|
T Consensus 124 ~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 124 EIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 347
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=49.23 E-value=1.4e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
....|+..+..|..........+..+......|...+..|+..
T Consensus 35 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E 77 (136)
T PF04871_consen 35 ENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEE 77 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666655556666666666666666666666643
No 348
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.02 E-value=1.3e+02 Score=30.15 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNRE 171 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~ 171 (211)
.++.+++.-+..|+.++..+..++......|..+..+|..
T Consensus 487 e~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~ 526 (622)
T COG5185 487 EDIKNLKHDINELTQILEKLELELSEANSKFELSKEENER 526 (622)
T ss_pred HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4556666666666666666666666666666555554443
No 349
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=48.96 E-value=27 Score=33.17 Aligned_cols=31 Identities=32% Similarity=0.250 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 153 PLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 153 ~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.+...|++++..|..||..|+..+..|+.+.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777888888888877775543
No 350
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=48.67 E-value=1.5e+02 Score=25.42 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEALENETAA 185 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~ 185 (211)
-|+..+++...|..+|+.|+.++..|-..+.-
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~ 72 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARE 72 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777778888888888877666643
No 351
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.67 E-value=4.4e+02 Score=29.65 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+.-+.+++.++..++.+...|..++..+++....+..+...+.+.+..++
T Consensus 375 eeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 375 DEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555544444443
No 352
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=48.57 E-value=84 Score=24.44 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
.+|-.+++-.+.|..-|...++.+..++..|+.|-..++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655444444444443333
No 353
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.37 E-value=5.9 Score=39.89 Aligned_cols=52 Identities=31% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 048456 129 RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKV---LGKMNREMKEMMEALE 180 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~---L~~EN~~Lk~~L~~L~ 180 (211)
+|..-+.+|..+|+.|+..|..|..+...|+.+... +......++.++..|+
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe 376 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELE 376 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467778888999999999998888777777766443 3333334444444443
No 354
>PLN02678 seryl-tRNA synthetase
Probab=48.30 E-value=2.7e+02 Score=27.07 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=9.4
Q ss_pred CChHHHHHHHHhhH
Q 048456 108 KGPKRMKRLLANRV 121 (211)
Q Consensus 108 ~d~KR~KR~l~NRe 121 (211)
.++..+++.+++|-
T Consensus 13 ~~~~~v~~~l~~R~ 26 (448)
T PLN02678 13 GDPELIRESQRRRF 26 (448)
T ss_pred cCHHHHHHHHHhhC
Confidence 35667777777774
No 355
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.24 E-value=2.9e+02 Score=27.51 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
-+++||.++..++.+...+..++..++.+...+..+-..|+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444444444444444444444333333
No 356
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=48.19 E-value=2.4e+02 Score=26.40 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEAL-------EN---------ETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L-------~~---------q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
|..|+.+...|.+|++.|..+|..- .. -..-..++...|..||.||+..+
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777778888888877631 00 01122345567777787776554
No 357
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=48.14 E-value=1.7e+02 Score=24.62 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=40.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 110 PKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 110 ~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
.+-+++|++.|.-|.-.-..|-.-..+|..+++..+..+..|...|+.+...
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888888887777777777776543
No 358
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.83 E-value=1.1e+02 Score=22.33 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
|-..|..|-..-..|......+...|..|..+...+......|+.++..++.+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888888777777777777777777776653
No 359
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=47.80 E-value=1.7e+02 Score=24.73 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLLGE 209 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~~~ 209 (211)
.-++.||..++.|......+...+..+..++ . +..+...+.|.++|..|+..+.+..+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~-----------------~---qes~~~veel~eqV~el~~i~emv~~ 136 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKT-----------------P---QESRGIVEELEEQVNELKMIVEMVIK 136 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh-----------------H---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666655555555554443221 1 11122445566666666666655543
No 360
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=47.72 E-value=1.2e+02 Score=24.47 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 048456 130 NLAYMEKLKKE 140 (211)
Q Consensus 130 Kk~yieeLE~k 140 (211)
+++|+..|+..
T Consensus 79 ~~~~i~~~~~~ 89 (139)
T PF13935_consen 79 AQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHH
Confidence 55566666544
No 361
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.69 E-value=1.9e+02 Score=25.18 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMK 173 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk 173 (211)
+..|+.++..|+..|..|...++..+++...|..+...+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 362
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=47.48 E-value=2e+02 Score=25.39 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+...-+..+..|...+..+.+....|+.-+..+-+++...
T Consensus 103 raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~ 142 (205)
T KOG1003|consen 103 RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY 142 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH
Confidence 3333344444455555555544445544444444444333
No 363
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.48 E-value=92 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 147 RLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 147 en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
.+..|..++..+..++..+...++.+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333333
No 364
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.39 E-value=3.5e+02 Score=28.11 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALME 195 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~ 195 (211)
.+.+++.+.++|.--.+...+++.++. +..+...+...+..=-++...|...+..++..+..+..-. +....|++
T Consensus 208 ~~~~~~~~l~e~~~~~qq~a~~~~ql~-~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~----~tv~~Lqe 282 (716)
T KOG4593|consen 208 KIQELQASLEERADHEQQNAELEQQLS-LSEELEAINKNMKDQLQELEELERALSQLREELATLRENR----ETVGLLQE 282 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHH
Q ss_pred HHHHHHHHHhhh
Q 048456 196 EKEALGLAYRLL 207 (211)
Q Consensus 196 Ei~rL~~~~~~~ 207 (211)
|+++|+.-++.+
T Consensus 283 E~e~Lqskl~~~ 294 (716)
T KOG4593|consen 283 ELEGLQSKLGRL 294 (716)
T ss_pred HHHHHHHHHHHH
No 365
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.11 E-value=3.1e+02 Score=27.39 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
.+..|+.++..++.+...+...+..++++...+..+...++.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 366
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.02 E-value=1.6e+02 Score=23.98 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE--TAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q--~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
+|..|+.+...+..++..+...+.. -+..++..+..+..+ ..|+..+...+...|+.-+...
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~---i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~ 209 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEE---ISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIA 209 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445444444433322 234566666666543 4566666666666665554443
No 367
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.01 E-value=1e+02 Score=21.81 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
++.+|..+...|..++..|. .+-..|+..++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs-------~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLS-------SDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 45555555555555554444 44445554443
No 368
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.92 E-value=2.2e+02 Score=25.79 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 048456 123 AQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYET----ECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 123 AqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~----~~~~L~~EN~~Lk~~L~~L 179 (211)
=+.-..+-...+..|+.+|..|..++.....+|..|.. +|---......|..+|+.+
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l 132 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL 132 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 33344455556667777777777766666666666531 2222222444455555555
No 369
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=46.35 E-value=1.6e+02 Score=27.67 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPL 154 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~ 154 (211)
|++.|+.++..|+.+...|..+
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333
No 370
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=46.21 E-value=2.6e+02 Score=27.48 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=52.5
Q ss_pred CChHHHHHHHHhhHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQR----SRL-------RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqr----SR~-------RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
.+.+.+.-|+.+=..+-. .|. --..|++-|-..+++.......+...+..+.+...++..+-..|.-+|
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456777777665444321 111 135688888888888888888888888888888877777777777777
Q ss_pred HHHHHHH
Q 048456 177 EALENET 183 (211)
Q Consensus 177 ~~L~~q~ 183 (211)
..|..+.
T Consensus 477 ~~l~~~T 483 (507)
T PF05600_consen 477 DALVERT 483 (507)
T ss_pred HHHHHHH
Confidence 7776654
No 371
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=46.17 E-value=2.5e+02 Score=29.46 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEF-----------------QAL 193 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~-----------------e~L 193 (211)
.+.+..-|-.+-+|+.+.+.|...-+.|-.+...|++||..|+.....+..-..-.+.+. |.|
T Consensus 858 eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EEL 937 (961)
T KOG4673|consen 858 EALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEEL 937 (961)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHHHHHHHHhhh
Q 048456 194 MEEKEALGLAYRLL 207 (211)
Q Consensus 194 ~~Ei~rL~~~~~~~ 207 (211)
+-.+..|+.+|..+
T Consensus 938 rlDl~dlK~mYk~Q 951 (961)
T KOG4673|consen 938 RLDLVDLKEMYKEQ 951 (961)
T ss_pred HhhHHHHHHHHHHH
No 372
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.14 E-value=3.5e+02 Score=27.85 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 048456 156 SHYETECKVLGKMNREMKEMMEALENET-----AAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 156 ~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-----~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
..|...+..+......|..|++.+-+.. .+-++.. ..++|+++++..+
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr-~~~~EL~~~~~~l 648 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAER-EFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHHH
Confidence 3333334444445555555555554433 2233333 3555565555444
No 373
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.70 E-value=1e+02 Score=31.54 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
|+...++|..|..++...++++.+.---+....++|+.||++-+.++
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 33333444444455555554444433222334455666665554444
No 374
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.16 E-value=80 Score=29.86 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L 158 (211)
|+.++..|+.++..|..+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~ 48 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNL 48 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 375
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=44.96 E-value=1e+02 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
..|+.++..++.+...|..++..+.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 376
>PRK11239 hypothetical protein; Provisional
Probab=44.89 E-value=41 Score=29.80 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
..||.+|..|+.+.+.|++++..|..+
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888888877643
No 377
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=44.81 E-value=83 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
|+.+++.|+..+..|..++..+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLEREL 38 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 378
>PRK14160 heat shock protein GrpE; Provisional
Probab=44.79 E-value=2.2e+02 Score=25.03 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
-+..|+.++..|+.++..|..++..+...+..+.++...+|.+...=
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE 101 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKE 101 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777777777777778877777776543
No 379
>PRK10963 hypothetical protein; Provisional
Probab=44.72 E-value=90 Score=26.99 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.=.|.++..|+.+|..|+.++..|.. ...+|..+-.++..+....
T Consensus 40 SL~ErQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 40 SLVEWQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888877753 3477777777777776554
No 380
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.71 E-value=4.5e+02 Score=28.67 Aligned_cols=44 Identities=7% Similarity=0.122 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
.+||.++..|..++..+...+..+..+...|..+-..+..++..
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443333
No 381
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.46 E-value=2.4e+02 Score=30.16 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.|-.|.-++..|+.+...|...++.++.+..+...|-..+..++..+++
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433
No 382
>PF14645 Chibby: Chibby family
Probab=44.43 E-value=1.1e+02 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L 158 (211)
.|+.+..-|.-++.-|..-++..
T Consensus 82 ~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 82 QLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 383
>PLN02939 transferase, transferring glycosyl groups
Probab=44.01 E-value=3.9e+02 Score=28.83 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
|-.++..|..||..||..++.|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAE 248 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566777788888888888777555
No 384
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=43.91 E-value=26 Score=23.47 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=9.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 115 RLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLV 155 (211)
Q Consensus 115 R~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l 155 (211)
+...|++=|...-... .-+.+||.++..|..||-.|..++
T Consensus 5 ~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 5 YSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3344444444333322 235667777777777776666554
No 385
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=43.82 E-value=2.9e+02 Score=26.16 Aligned_cols=70 Identities=17% Similarity=0.348 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNR---EMKEMMEALENETAAKEAEFQALMEEKEALGLA 203 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~---~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~ 203 (211)
..+|...+..++.+...+..++..+.++...+..+-. ....++..|+.+....+..++.+.+-.+..+..
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666555555443 234456667777777777777777766665544
No 386
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=43.76 E-value=95 Score=22.08 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
+++|+.++..|+.|+..+...+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888887777777666543
No 387
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.65 E-value=4.7e+02 Score=28.60 Aligned_cols=87 Identities=20% Similarity=0.142 Sum_probs=50.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 048456 118 ANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE----AEFQAL 193 (211)
Q Consensus 118 ~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~----a~~e~L 193 (211)
.|..+-+.+-..-..-..+||.++..+......+..+...|....+.+...-.+++..+..++...-.-. -.|++|
T Consensus 388 ~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL 467 (1141)
T KOG0018|consen 388 RNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL 467 (1141)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Confidence 3444444444444455567777777777666666666666666666666666667766666655542222 145555
Q ss_pred HHHHHHHHHHH
Q 048456 194 MEEKEALGLAY 204 (211)
Q Consensus 194 ~~Ei~rL~~~~ 204 (211)
.+.++.|--+.
T Consensus 468 ~~~~~ql~das 478 (1141)
T KOG0018|consen 468 VEVLDQLLDAS 478 (1141)
T ss_pred HHHHHHHHhhh
Confidence 55555554443
No 388
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=43.40 E-value=4e+02 Score=28.57 Aligned_cols=41 Identities=5% Similarity=0.114 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+..+.++.....+...+...|..|..+...|..+.....+|
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ 453 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ 453 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445445555555555444444444443
No 389
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=43.28 E-value=2.2e+02 Score=27.94 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 123 AQRSRLRNLAYMEKLKKE-----IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 123 AqrSR~RKk~yieeLE~k-----v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
|-+-++.=++|++.||.+ +.++..+...+...-..|-++...+..++..|-..|..++.
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667788877765 33344444444444444444455555555555555444433
No 390
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=42.59 E-value=1.1e+02 Score=28.94 Aligned_cols=16 Identities=19% Similarity=-0.049 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYE 159 (211)
Q Consensus 144 L~~en~~L~~~l~~L~ 159 (211)
++.++..|..++..+.
T Consensus 27 ~~~~~~~~~~~~~~~~ 42 (398)
T PTZ00454 27 LEKELEFLDIQEEYIK 42 (398)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 391
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=42.36 E-value=2.4e+02 Score=24.87 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
..++..+..++.+...+..++...+
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~a~ 121 (334)
T TIGR00998 97 KQLEITVQQLQAKVESLKIKLEQAR 121 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 392
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=42.33 E-value=1.4e+02 Score=28.85 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 170 REMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 170 ~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
.+++.++..+..+........+.|...+++|+.
T Consensus 196 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 196 PELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444433333344445555555543
No 393
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=41.96 E-value=1.2e+02 Score=28.98 Aligned_cols=29 Identities=3% Similarity=-0.052 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
.+.++|.+++.-..-|+.|-.+-+.|..+
T Consensus 120 kv~EveekykkaMvsnaQLDNEKsnl~Yq 148 (405)
T KOG2010|consen 120 KVSEVEEKYKKAMVSNAQLDNEKNNLIYQ 148 (405)
T ss_pred hhHHHHHHHHHHHHHHHhhcccccceeee
Confidence 45678888887777676665554444433
No 394
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=41.96 E-value=3.2e+02 Score=28.42 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
+.-+..|..++..|+....+|..+......+......|-..|+.+|.......--+.++-+.|+.-|..+
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq 230 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQ 230 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
No 395
>PHA02557 22 prohead core protein; Provisional
Probab=41.94 E-value=2e+02 Score=26.41 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 147 RLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEF 190 (211)
Q Consensus 147 en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~ 190 (211)
....|..+|...++.+..+-.+|..|+.++..+.....|-++..
T Consensus 142 vV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~ 185 (271)
T PHA02557 142 VVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTK 185 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678888888888899999999999999999999988887644
No 396
>PRK10963 hypothetical protein; Provisional
Probab=41.88 E-value=1.1e+02 Score=26.38 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEALENETA 184 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~ 184 (211)
-|+..+++...|..+|..|+.++..|-..+.
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~ 68 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLLMEQAI 68 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888899988888877664
No 397
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=41.74 E-value=3.5e+02 Score=26.51 Aligned_cols=10 Identities=20% Similarity=0.136 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 048456 191 QALMEEKEAL 200 (211)
Q Consensus 191 e~L~~Ei~rL 200 (211)
..|..|+.++
T Consensus 340 ~~L~~eL~~~ 349 (522)
T PF05701_consen 340 SSLEAELNKT 349 (522)
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 398
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=41.67 E-value=2.1e+02 Score=23.94 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 048456 119 NRVSAQRSRLRNLAYMEKLKKE-------IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE--TAAKEAE 189 (211)
Q Consensus 119 NReSAqrSR~RKk~yieeLE~k-------v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q--~~~~~a~ 189 (211)
.=+.|...=.+|++.++.|... +..+..++..+..++..++.++.... ..++..+..+..+ .-++..+
T Consensus 136 ~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~~k~~d~k~~l 212 (236)
T PF09325_consen 136 EYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEKEKVKDFKSML 212 (236)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666555543 55667777777777777766665553 3577777777554 3666777
Q ss_pred HHHHHHHHHHHHHH
Q 048456 190 FQALMEEKEALGLA 203 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~ 203 (211)
.+.+...|+.-+..
T Consensus 213 ~~~~~~~i~~~~~~ 226 (236)
T PF09325_consen 213 EEYAESQIEYQKKM 226 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777555443
No 399
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.35 E-value=2.8e+02 Score=25.31 Aligned_cols=46 Identities=9% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+++.+++.|..+..++..++..++.++..+..+-..|+.++..++.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555543
No 400
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.21 E-value=3.7e+02 Score=28.76 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 150 VLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 150 ~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+|..|...-+....-+.+.+..|.++|.+|..
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~ 451 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNF 451 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555555555533
No 401
>PRK14154 heat shock protein GrpE; Provisional
Probab=40.32 E-value=2.6e+02 Score=24.56 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVS 156 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~ 156 (211)
.+|..++..+..+...++.+..
T Consensus 69 ~elkd~~lRl~ADfeNyRKR~~ 90 (208)
T PRK14154 69 DEYKTQYLRAQAEMDNLRKRIE 90 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 402
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=40.26 E-value=1.9e+02 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L 158 (211)
+.++.++++|+...+.+...|..+
T Consensus 95 ~~l~~ri~eLe~~l~~kad~vvsY 118 (175)
T PRK13182 95 NTITRRLDELERQLQQKADDVVSY 118 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Confidence 444444444444444444444433
No 403
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=40.09 E-value=1.3e+02 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
..|+.++..++.++..|..++..+..+...+..+...|+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444444444444444333
No 404
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.47 E-value=1.3e+02 Score=21.10 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.+||.++..+......++.++..+.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~ 27 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEIS 27 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444444444444443
No 405
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=39.41 E-value=2.6e+02 Score=28.21 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 048456 189 EFQALMEEKEALGLAYRL 206 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~~ 206 (211)
.|+.|++||.+++..|..
T Consensus 324 ~n~~L~~Eie~V~~sY~l 341 (570)
T COG4477 324 NNEHLKEEIERVKESYRL 341 (570)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 568889999888887753
No 406
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=39.20 E-value=2.7e+02 Score=24.46 Aligned_cols=14 Identities=21% Similarity=0.041 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhh
Q 048456 193 LMEEKEALGLAYRL 206 (211)
Q Consensus 193 L~~Ei~rL~~~~~~ 206 (211)
|..|+..|+..+..
T Consensus 92 le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 92 LEAELAELREELAC 105 (202)
T ss_pred hHHHHHHHHHHHHh
Confidence 44455555544443
No 407
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=39.09 E-value=1.6e+02 Score=24.03 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
....+..|..||.-|+..+..+|.-|..=...-..|+.+|
T Consensus 83 KdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL 122 (126)
T PF13118_consen 83 KDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQL 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555555555555555555544443333333444433
No 408
>PRK10722 hypothetical protein; Provisional
Probab=39.01 E-value=1.9e+02 Score=26.16 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVS------AQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLG 166 (211)
Q Consensus 111 KR~KR~l~NReS------AqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~ 166 (211)
.-+=++++.++- +.|.|-.|.+ ++-+.++..|..++..|..++..+.++...|+
T Consensus 144 rPL~qlwr~~Q~l~l~LaeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 144 RPLYQLWRDGQALQLALAEERQRYQKLQ--QSSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred hHHHHHHHHhhHHHHhHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566654 5555555544 33345555555555555555555444444333
No 409
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=39.01 E-value=2.2e+02 Score=23.38 Aligned_cols=38 Identities=11% Similarity=-0.097 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
-++..|...++..++........+.++..+|..+..+.
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a 56 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLLALA 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455555555555555555555666665555554444
No 410
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=38.98 E-value=2.7e+02 Score=28.49 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLA 203 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~ 203 (211)
++...+++.--..+..+......+|+.|.++......+-.+|+.+|+.- .-++.+++|+.-|+..
T Consensus 295 ~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 295 AQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHh
No 411
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.89 E-value=2.7e+02 Score=24.49 Aligned_cols=10 Identities=40% Similarity=0.424 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 048456 131 LAYMEKLKKE 140 (211)
Q Consensus 131 k~yieeLE~k 140 (211)
+.+++.+|.+
T Consensus 65 ~~~~~k~e~~ 74 (225)
T COG1842 65 QARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 412
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=38.72 E-value=2.8e+02 Score=28.86 Aligned_cols=37 Identities=19% Similarity=0.043 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 126 SRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 126 SR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
-=+++.--...||.+.-+|..|.++|+-+++.|+++.
T Consensus 161 mLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 161 MLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred HHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 3344555568899999999999999999999988654
No 413
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.68 E-value=1.6e+02 Score=21.64 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048456 162 CKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 162 ~~~L~~EN~~Lk~~L~~L~~q 182 (211)
...|..||=.||.++--|+..
T Consensus 9 i~~L~KENF~LKLrI~fLee~ 29 (75)
T PF07989_consen 9 IDKLKKENFNLKLRIYFLEER 29 (75)
T ss_pred HHHHHHhhhhHHHHHHHHHHH
Confidence 344456666666665555443
No 414
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=38.48 E-value=3.3e+02 Score=25.25 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=35.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 117 LANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNR 170 (211)
Q Consensus 117 l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~ 170 (211)
++|.+----++.-=-+.++.||..+.++......|...|-.|++.+..|..-.+
T Consensus 76 e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakR 129 (333)
T KOG1853|consen 76 ERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKR 129 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhh
Confidence 344444334444444556778888888888778888888888777777765444
No 415
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.46 E-value=1.5e+02 Score=26.79 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
++.++.+|+.|...|...+..+. ..-.+.+..|..+++.|.
T Consensus 62 ~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~ 102 (247)
T COG3879 62 LQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHH
Confidence 33344444444444444444433 111144445555555544
No 416
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=38.38 E-value=3e+02 Score=26.23 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 143 NEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKE 198 (211)
Q Consensus 143 ~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~ 198 (211)
+++.-...+...++.=..++..|..+|..|.+.+..|-.+-..++-+++.+.+.++
T Consensus 113 ~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke 168 (391)
T KOG1850|consen 113 QFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE 168 (391)
T ss_pred HHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555556666677777777777766655555555554444443
No 417
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.26 E-value=5.7e+02 Score=27.99 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
+.|.-.+.+|+.+...+..++..+..++..|..++..|...+...
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444444445555555555555555555554444443
No 418
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=38.23 E-value=2.9e+02 Score=24.61 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 048456 166 GKMNREMKEMMEALENET-AAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 166 ~~EN~~Lk~~L~~L~~q~-~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
...-..+|..|..++... ..-.+.||.|+.||+++|..+
T Consensus 100 ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 100 KVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677776665554 444567777777777776554
No 419
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=38.18 E-value=1.4e+02 Score=28.08 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
|..+|..++..+..|..++..+.+....+......|...|..|+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 420
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=38.13 E-value=2.7e+02 Score=24.27 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
+|+.+..-+.....|...+...+.+-..........+.+...|+.+..--.+....|...|..|....
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444555555555555555555566666666665555444455556666666665443
No 421
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=37.98 E-value=1.1e+02 Score=26.19 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLG 166 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~ 166 (211)
+.++..|..+...|+.++..|..+...++..|..|.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777776655443
No 422
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=37.92 E-value=2.3e+02 Score=24.34 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 127 RLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 127 R~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
=.+|++|+.+-..+...++.+..+|..++...+
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556666666666666555555555555443
No 423
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.57 E-value=3.7e+02 Score=26.84 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEAR-------LSVLLPLVSHYETECKVLGKMNREMKEMMEALENET-AAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 131 k~yieeLE~kv~~L~~e-------n~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-~~~~a~~e~L~~Ei~rL~~ 202 (211)
+.-+++++.+|..|+.. .....+++..|..+.......-+.|+..|+....+. ..-+++..+-++-+.+|+.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 44566666666666653 223333344333333333333333333333332221 1122333445556666666
Q ss_pred HHh
Q 048456 203 AYR 205 (211)
Q Consensus 203 ~~~ 205 (211)
.++
T Consensus 270 ~~~ 272 (555)
T TIGR03545 270 KYA 272 (555)
T ss_pred HhC
Confidence 655
No 424
>PF05386 TEP1_N: TEP1 N-terminal domain; InterPro: IPR008850 Telomerase protein component 1 (TP1/TLP1) or TEP1 is a protein component of two ribonucleoprotein (RNP) complexes: vaults and telomerase. Vaults are large RNP particles with a barrel-like structure (IPR002499 from INTERPRO). The telomerase RNP replenishes incomplete chromosome termini due to DNA replication. Mammalian TEP1 is an RNA-binding protein and is required for the association of vault RNA with the vault particle [, ]. The N-terminal part of TEP1 contains 4 copies of the TEP1 N-terminal repeat in tandem. The repeat is composed of 30 amino acids and occurs in combination with the TROVE (IPR008858 from INTERPRO) and NACHT (IPR007111 from INTERPRO) domains and with WD-40 repeats (see IPR001680 from INTERPRO) in the C-terminal part.
Probab=37.56 E-value=9.8 Score=23.68 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhhhhhhh
Q 048456 16 MENLASLRRSASDSLAL 32 (211)
Q Consensus 16 ~~~~~~~rr~~sd~~~~ 32 (211)
||+.-+|..+++||+.|
T Consensus 1 mEK~hGh~sahpdILSL 17 (30)
T PF05386_consen 1 MEKPHGHVSAHPDILSL 17 (30)
T ss_pred CCCccCcccCCcchhhh
Confidence 78889999999999974
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=37.53 E-value=4.2e+02 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSH 157 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~ 157 (211)
-++.||.++..|+.+..+|..++..
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777777777777777643
No 426
>PRK00106 hypothetical protein; Provisional
Probab=37.43 E-value=4.3e+02 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048456 124 QRSRLRNLAYMEKLKKEIDN 143 (211)
Q Consensus 124 qrSR~RKk~yieeLE~kv~~ 143 (211)
..++..++.+..+.+.++..
T Consensus 64 ~EAke~~ke~~lEaeeEi~~ 83 (535)
T PRK00106 64 RESKALKKELLLEAKEEARK 83 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 427
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.02 E-value=2.4e+02 Score=23.21 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 048456 191 QALMEEKEALG 201 (211)
Q Consensus 191 e~L~~Ei~rL~ 201 (211)
+.|+++|..|+
T Consensus 155 ~~l~~~i~~l~ 165 (177)
T PF13870_consen 155 EELRKEIKELE 165 (177)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 428
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.02 E-value=1.5e+02 Score=21.06 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
.+..|-.+..++......+..|..+-..|+.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333333333333
No 429
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.02 E-value=2.7e+02 Score=23.87 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
..++..++.+...|.-|+..|.++...++.+
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555444
No 430
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=36.89 E-value=2.4e+02 Score=26.82 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETE----CKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~----~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
+|..++..|+.+-+.+..++..+... ...|..+-++|+.++..++.+..-.+.....+-..|
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 431
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=36.57 E-value=2.1e+02 Score=26.27 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=36.5
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 107 GKGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 107 ~~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
...|||.+-- .|...-......+.+.+.++..++.....|..+......+...|..+......+|..-
T Consensus 215 ~V~P~~~~l~-----~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 215 EVEPKRQKLE-----EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp CCCHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 3567766552 2222333344455555555555555555556666565555666666655555555443
No 432
>PRK14011 prefoldin subunit alpha; Provisional
Probab=36.51 E-value=2.4e+02 Score=23.19 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 048456 172 MKEMMEALEN 181 (211)
Q Consensus 172 Lk~~L~~L~~ 181 (211)
|..+++.+++
T Consensus 125 L~~k~~~~~~ 134 (144)
T PRK14011 125 LEKRAQAIEQ 134 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 433
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=36.22 E-value=3e+02 Score=24.15 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEA 199 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~r 199 (211)
|.-|-.+++..+.|.+.=...|-.|..+...+.+.......++..+.....-+....+.+..|+++
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr 77 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQR 77 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHH
Confidence 344444445554444444444444444444444444444444444444333333333444444433
No 434
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=36.17 E-value=80 Score=24.80 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLS-VLLPLVSHY 158 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~-~L~~~l~~L 158 (211)
.||.+|...|..||.+++ .|.+++..-
T Consensus 54 t~L~~LR~~lt~lQddIN~fLTeRMe~d 81 (103)
T PF08738_consen 54 TYLSELRAQLTTLQDDINEFLTERMEED 81 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988766 555555443
No 435
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=36.16 E-value=3.3e+02 Score=24.92 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 168 MNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 168 EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
...++..+.+.++.+..+........++++.+|+
T Consensus 203 ~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~ 236 (264)
T PF07246_consen 203 LHEELEARESGLRNESKWLEHELSDAKEDMIRLR 236 (264)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433444444444444444444445554443
No 436
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.02 E-value=3.2e+02 Score=24.47 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
-+..|...+..++.....|..++..+......|..+-..|+.++..++..
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666555544
No 437
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=35.99 E-value=1.8e+02 Score=21.44 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMN 169 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN 169 (211)
|...|..|..|+.+|..++...+.++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888877766665554
No 438
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=35.95 E-value=92 Score=24.74 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~ 159 (211)
+.+.|+.||+-|+-++..|.
T Consensus 80 k~~~LeEENNlLklKievLL 99 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877774
No 439
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=35.71 E-value=2.6e+02 Score=23.34 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 123 AQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 123 AqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
+-.-|.++..+++.++..+...+.....|...-..-......+..+-..+..++..++.+- +...+.++.|++|..
T Consensus 126 ~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~---~~is~~~k~E~~rf~ 201 (236)
T PF09325_consen 126 ALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF---EEISENIKKELERFE 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3344444555555555555554444444433311112223333344444444444333321 224455667776653
No 440
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=35.56 E-value=3.7e+02 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=24.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 113 MKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 113 ~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
.++.|..|..|.+.-..-+.-..++...+..+..........+..+
T Consensus 195 ~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Y 240 (511)
T PF09787_consen 195 ERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQY 240 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456666666666555555555555555555554444444433333
No 441
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=35.52 E-value=3.1e+02 Score=24.18 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
..++.||.+++.|+........++..++.....+..+...|..
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~ 110 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEG 110 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555666666666555555555555555444444444433333
No 442
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=35.21 E-value=1.7e+02 Score=28.81 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 151 LLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 151 L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|..-+..|+.++.+|+..|+.|++++
T Consensus 411 l~e~le~Lq~Q~eeL~e~~n~l~qrI 436 (514)
T KOG4370|consen 411 LQEILELLQRQNEELEEKVNHLNQRI 436 (514)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 443
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=35.07 E-value=79 Score=24.04 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
|...+..+..+|..|..+|..++
T Consensus 85 L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 85 LNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334455555555555443
No 444
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=34.85 E-value=4.6e+02 Score=25.87 Aligned_cols=13 Identities=46% Similarity=0.396 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 048456 189 EFQALMEEKEALG 201 (211)
Q Consensus 189 ~~e~L~~Ei~rL~ 201 (211)
+-.+|.+|.+.|+
T Consensus 447 LaqalEaerqaLR 459 (593)
T KOG4807|consen 447 LAQALEAERQALR 459 (593)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555554444
No 445
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.81 E-value=1.7e+02 Score=28.83 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHhhh
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMMEALENET---AAKE----AEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~---~~~~----a~~e~L~~Ei~rL~~~~~~~ 207 (211)
=+-+..||.+-..++-+|-.||++|+...|+. +-+. .....|.+|+..-|.++.-+
T Consensus 70 PalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~ 132 (506)
T KOG0289|consen 70 PALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKL 132 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567788888889999999999999998874 1111 15567888888777776544
No 446
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.73 E-value=4.8e+02 Score=26.07 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYET 160 (211)
Q Consensus 146 ~en~~L~~~l~~L~~ 160 (211)
.+..++..++..++.
T Consensus 191 ~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 191 QDLEEYKKRLEAIKK 205 (555)
T ss_pred hhHHHHHHHHHHHHh
Confidence 344455555555543
No 447
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.68 E-value=5.1e+02 Score=26.33 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCChHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 107 GKGPKRMKRLLA------NRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 107 ~~d~KR~KR~l~------NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
..||.+..+++- +.++-.+-...-..-++-|+.++..++.+......++...+++
T Consensus 236 ~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 236 GDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888877532 1111111112222234555666666666666655555555554
No 448
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=34.63 E-value=1e+02 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 129 RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
|...||..|+.+....+... ..|..+|..|+.+|..|.
T Consensus 102 kA~~~i~~l~~~~~~~~~~~--------------e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 102 KALEHIQSLERKSATQQQDI--------------EDLSRENRKLKARLEQLS 139 (232)
T ss_pred hHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhc
Confidence 45667777776665543333 334455666666666554
No 449
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.18 E-value=2.6e+02 Score=22.92 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 048456 168 MNREMKEMM 176 (211)
Q Consensus 168 EN~~Lk~~L 176 (211)
++..++..|
T Consensus 92 ~~~~l~~~l 100 (177)
T PF13870_consen 92 ELERLKQEL 100 (177)
T ss_pred HHHHHHHHH
Confidence 333333333
No 450
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=34.06 E-value=4.6e+02 Score=29.09 Aligned_cols=59 Identities=24% Similarity=0.168 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 149 SVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 149 ~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
..+...+..++.++..+..+...+...+...+........+...|..|..+......+.
T Consensus 958 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~ 1016 (1395)
T KOG3595|consen 958 QDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWSETSEQF 1016 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 44455666666666677777778888887777777777778888888887776555443
No 451
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=2.5e+02 Score=23.25 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
++|+.-...++.....|..++..+.
T Consensus 104 ~~l~~~~~~l~~~l~~l~~~~~~l~ 128 (145)
T COG1730 104 EELEKAIEKLQQALAELAQRIEQLE 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 452
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.98 E-value=3.2e+02 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 170 REMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 170 ~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
..++..|..+++|+...+.+...=+.|++.|+
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888777776666777777765
No 453
>COG5293 Predicted ATPase [General function prediction only]
Probab=33.65 E-value=5e+02 Score=26.02 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=57.0
Q ss_pred HHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 113 MKRLLANRVSAQRSRLRNL-AYMEKLKKEIDNEEARLSVLL---------PLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 113 ~KR~l~NReSAqrSR~RKk-~yieeLE~kv~~L~~en~~L~---------~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
-++|..||-+=-.+.-.+- .-+.+++.+++.|..+.+++. ...+.|+.++-.+..|-.+++-+++.+.+.
T Consensus 329 ~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~ 408 (591)
T COG5293 329 NRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKL 408 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 3678888877766654442 334455555555555544433 455677777888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048456 183 TAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 183 ~~~~~a~~e~L~~Ei~rL 200 (211)
.++..-+++ |+.|+=++
T Consensus 409 ~~~~~~i~~-lkhe~l~~ 425 (591)
T COG5293 409 HALDQYIGT-LKHECLDL 425 (591)
T ss_pred HHHHHHHHH-HHHHHHHH
Confidence 777776665 66666444
No 454
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.52 E-value=1.8e+02 Score=22.00 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+++|....+.|+.+...|..++..+.... .|...++.-+..+.
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~----~e~~~~~~~l~~l~ 43 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQL----TEYEKAKETLETLK 43 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
No 455
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=33.37 E-value=1.9e+02 Score=21.10 Aligned_cols=6 Identities=0% Similarity=0.385 Sum_probs=2.1
Q ss_pred HHHHHH
Q 048456 172 MKEMME 177 (211)
Q Consensus 172 Lk~~L~ 177 (211)
|-.++.
T Consensus 54 Ls~qv~ 59 (70)
T PF04899_consen 54 LSQQVQ 59 (70)
T ss_pred HHHHHH
Confidence 333333
No 456
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=33.25 E-value=2.2e+02 Score=22.14 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..+-+.|.+....|..+|..|..+|+.+
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 457
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.25 E-value=5e+02 Score=25.86 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECK 163 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~ 163 (211)
..++.+++.|+.+...|..++..++.+..
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566777888888888888877776653
No 458
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=32.93 E-value=1.8e+02 Score=27.44 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|..|+..|.+|..||...+.++.-|..-|++=-..+..|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKL 40 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKL 40 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999888877777666544444444
No 459
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=32.76 E-value=2e+02 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSH 157 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~ 157 (211)
++.||.++..|+.+..+|..++..
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~ 593 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVAD 593 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888888888777753
No 460
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=32.68 E-value=6.5e+02 Score=29.14 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYR 205 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~ 205 (211)
|+.+|.....++..|+.....|..+-.-|.-.+..+.-+.....+....|+.|.++-+..++
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333344444444433333333334344444444444444555556666655555444
No 461
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.64 E-value=2.7e+02 Score=23.14 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048456 162 CKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 162 ~~~L~~EN~~Lk~~L~~L 179 (211)
...|..|...|+.+|..+
T Consensus 91 I~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 91 INAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555444
No 462
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=32.59 E-value=2e+02 Score=26.28 Aligned_cols=15 Identities=13% Similarity=0.322 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 048456 167 KMNREMKEMMEALEN 181 (211)
Q Consensus 167 ~EN~~Lk~~L~~L~~ 181 (211)
+|..+|..+++.|+.
T Consensus 221 ae~seLq~r~~~l~~ 235 (289)
T COG4985 221 AEKSELQKRLAQLQT 235 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 463
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.59 E-value=2.9e+02 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 048456 156 SHYETECKVLGKMNR----EMKEMMEALENETAAKEAE 189 (211)
Q Consensus 156 ~~L~~~~~~L~~EN~----~Lk~~L~~L~~q~~~~~a~ 189 (211)
..|+.+...|..+|. .+...+..+.....|..++
T Consensus 54 eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al 91 (155)
T PF06810_consen 54 EELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSAL 91 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555 5555555555555444443
No 464
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.46 E-value=47 Score=32.75 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVS 156 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~ 156 (211)
.|++|++++++|+.+...|..+|.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccc
Confidence 444444444444444443333333
No 465
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=32.43 E-value=1.5e+02 Score=27.80 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLV 155 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l 155 (211)
-.|..+-+.|..||..|..++
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 60 LVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 466
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=32.41 E-value=2.9e+02 Score=22.89 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=19.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNE 144 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L 144 (211)
+..-|.-.+..-.+|++|+.+|..+...+
T Consensus 6 Le~ek~~~~~rI~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 6 LEEEKQRRRERIKKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555567888888888877665
No 467
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.35 E-value=4.8e+02 Score=26.74 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
++..++.|+........++..|+++...|..+...|+..+..+
T Consensus 225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~ 267 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLL 267 (670)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444443
No 468
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.18 E-value=5.1e+02 Score=26.70 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKV--------------LG-KMNREMKEMMEALENETAAKEAEFQALMEE 196 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~--------------L~-~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~E 196 (211)
.|+++|..+...=..+..++..++..|-.+... |. .+-.+|+.+|..|+++...+--.+..++.+
T Consensus 110 ~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~ 189 (660)
T KOG4302|consen 110 PYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEE 189 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555433221 22 455678888888888876666667778888
Q ss_pred HHHHHHHHhh
Q 048456 197 KEALGLAYRL 206 (211)
Q Consensus 197 i~rL~~~~~~ 206 (211)
|..|-..+|.
T Consensus 190 I~~l~~~Lg~ 199 (660)
T KOG4302|consen 190 IKSLCSVLGL 199 (660)
T ss_pred HHHHHHHhCC
Confidence 8777555543
No 469
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=31.95 E-value=3.3e+02 Score=28.77 Aligned_cols=49 Identities=4% Similarity=0.013 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.+|+...+.+++.+...+..+......+.+-...+......|+-++...
T Consensus 71 sq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~ 119 (835)
T COG3264 71 SQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLS 119 (835)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4566777777777777776666666666666666666666665555444
No 470
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.84 E-value=63 Score=28.25 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L 158 (211)
+||.+|..|+.+.++|++++..+
T Consensus 189 dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 189 DLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888777765
No 471
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.72 E-value=1.3e+02 Score=27.27 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+.+||.++..|+.++.+|.- +..++.+.+....+..+...+++.++
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~ 103 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLE 103 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhc
No 472
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=31.64 E-value=3.5e+02 Score=28.06 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 048456 128 LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET-----AAKEAEFQALMEEKEAL 200 (211)
Q Consensus 128 ~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-----~~~~a~~e~L~~Ei~rL 200 (211)
.+|+. ..++.+++.|+.|.-.-..+ +|++...|+.||++|+ ++--+.... .|+..+.++-.+=++-|
T Consensus 224 ~~K~~--vs~~e~i~~LQeE~l~tQ~k---YQreLErlEKENkeLr-~lll~kd~k~i~~kklKkSLIDMYSEVLD~L 295 (980)
T KOG0447|consen 224 QQKRK--VSDKEKIDQLQEELLHTQLK---YQRILERLEKENKELR-KLVLQKDDKGIHHRKLKKSLIDMYSEVLDVL 295 (980)
T ss_pred HHhhh--hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHH-HHHhhccchhhHHHHHHHHHHHHHHHHHHHH
No 473
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=31.61 E-value=93 Score=27.05 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETA 184 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~ 184 (211)
+.++|+.+...|..++..|..++..|..|+.+|+..+..+....+
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
No 474
>PRK14143 heat shock protein GrpE; Provisional
Probab=31.53 E-value=3.8e+02 Score=23.91 Aligned_cols=69 Identities=6% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA--EFQALMEEKEALGLAY 204 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a--~~e~L~~Ei~rL~~~~ 204 (211)
+++..+..|+.+...|..++..+..++..+.++...+|.++..=..+...... +...|-.=++.|..++
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl 134 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERAR 134 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 475
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=31.49 E-value=1.7e+02 Score=26.73 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
+..|+.+...|..+|..|+.++..++.+....+.+.+.+-..+
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.45 E-value=6.5e+02 Score=26.64 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEF 190 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~ 190 (211)
|+-..+..-=.+-+|.|+|-+--.+--+.-+.+......--..+.....+....|..|-..+++++..++....-....+
T Consensus 167 kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~ 246 (916)
T KOG0249|consen 167 KLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDI 246 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHHHH
Q 048456 191 QALMEEKEALG 201 (211)
Q Consensus 191 e~L~~Ei~rL~ 201 (211)
|.|..|+.+|+
T Consensus 247 E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 247 EDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHH
No 477
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=31.37 E-value=5.2e+02 Score=27.31 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 124 QRSRLRNLAYMEKLKKEIDNEEARLSV----------------------LLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 124 qrSR~RKk~yieeLE~kv~~L~~en~~----------------------L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
||.=.+--..++++|+++.-|+.|... |..+++.++.+..++..-+..|+.....|..
T Consensus 48 QR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E 127 (829)
T KOG2189|consen 48 QRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLE 127 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 048456 182 ETAAKEAEFQ 191 (211)
Q Consensus 182 q~~~~~a~~e 191 (211)
..++.+...+
T Consensus 128 ~~~vl~~t~~ 137 (829)
T KOG2189|consen 128 LKYVLEKTDE 137 (829)
T ss_pred HHHHHHhhhh
No 478
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=31.26 E-value=92 Score=24.72 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.+..|+++...|..||..||-++..|
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.19 E-value=4.6e+02 Score=26.22 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
...+.++.+|..++............|.+.|..+|...+++..-.+...+.+...|.+|+
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.18 E-value=96 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
.++.++.+...|+.+|..|.-+++.|
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
No 481
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.17 E-value=1.1e+02 Score=22.88 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
+..+++++..|..+.+.|+..|+.+...-+|++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~ 34 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKE 34 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
No 482
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=31.17 E-value=4.2e+02 Score=24.28 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
..+.|-+.|..|+.....-..|..+|..|...--. ...-..|+++|..++.+...-++....++.+. ||.++...
T Consensus 129 ~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~-s~kl~~LeqELvraEae~lvaEAqL~n~kR~~--lKEa~~~~ 203 (271)
T PF13805_consen 129 HLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQ-SPKLVVLEQELVRAEAENLVAEAQLSNIKRQK--LKEAYSLK 203 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH--HHHHHHHH
No 483
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.17 E-value=2.9e+02 Score=23.67 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
+..+-+..-+.....-=.+|++|+.+-..+...++.+..+|..++...+++
T Consensus 125 ~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 125 EYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 484
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=31.03 E-value=5.6e+02 Score=27.72 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMK-------------------------------------- 173 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk-------------------------------------- 173 (211)
.|+.++|.....+..++.+++.++..+.++..++.++..+.+
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~ 1074 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDG 1074 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhh
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 048456 174 ---EMMEALENETAAKEAEFQALMEEKEALGLAYRLLGEG 210 (211)
Q Consensus 174 ---~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~~~~ 210 (211)
.+-+.++-...+++...+.|..||+.|+....-.+.|
T Consensus 1075 ~~edrakqkei~k~L~ehelenLrnEieklndkIkdnne~ 1114 (1424)
T KOG4572|consen 1075 KCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNNEG 1114 (1424)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
No 485
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.99 E-value=4.7e+02 Score=24.89 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH
Q 048456 113 MKRLLANRVSAQRSRLRN-----LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMN-R--EMKEMMEALENETA 184 (211)
Q Consensus 113 ~KR~l~NReSAqrSR~RK-----k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN-~--~Lk~~L~~L~~q~~ 184 (211)
++-+..|.+-.+.+-.++ -..+-+|..+...|..+...|..+...+..+...+.... . .|+.+...+..+..
T Consensus 4 ~k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~ 83 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIK 83 (425)
T ss_pred HHHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 185 AKEAEFQALMEEKEAL 200 (211)
Q Consensus 185 ~~~a~~e~L~~Ei~rL 200 (211)
-.+.....+.+++..+
T Consensus 84 ~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 84 ALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHH
No 486
>PRK01156 chromosome segregation protein; Provisional
Probab=30.51 E-value=6.2e+02 Score=26.05 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLP----------LVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~----------~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
..++..+.+-..-.+--...+.-+.+++.++..+..+...+.. .+..+...+..+..+-..|+..+..++
T Consensus 622 ~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~ 701 (895)
T PRK01156 622 REIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 181 NETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 181 ~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
.+..-.....+.+++++..++.....+
T Consensus 702 ~~i~~l~~~~~~l~eel~~~~~~~~~l 728 (895)
T PRK01156 702 STIEILRTRINELSDRINDINETLESM 728 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
No 487
>PLN02678 seryl-tRNA synthetase
Probab=30.23 E-value=3.3e+02 Score=26.45 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYE---TECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~---~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
+|..++..|+.+-+.+..++..+. .....|..+-+.|++++..++.+...-+.....+...|
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 488
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=30.17 E-value=3.6e+02 Score=23.21 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA--------------------- 188 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a--------------------- 188 (211)
|+.-++.||.+|.+.+.-..+....|...+........-...-+.++..|..-...-..
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~q 144 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQ 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 048456 189 EFQALMEEKEALGLAYRL 206 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~~ 206 (211)
+.+.-+..|+.|...+..
T Consensus 145 LLeaAk~Rve~L~~QL~~ 162 (188)
T PF05335_consen 145 LLEAAKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
No 489
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.16 E-value=4.8e+02 Score=24.68 Aligned_cols=74 Identities=26% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 048456 134 MEKLKKEIDNEEARLSV---------------------LLPLVSHYETECKVLGKMNREMKEMMEALENETA---AKEAE 189 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~---------------------L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~---~~~a~ 189 (211)
+.+|..++..|+..... |...+..++.+...+..+-..|..++..++.+.. -.+..
T Consensus 277 v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~e 356 (498)
T TIGR03007 277 VIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAE 356 (498)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 048456 190 FQALMEEKEALGLAYRLL 207 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~~~~~ 207 (211)
...|..|++..+..|..+
T Consensus 357 l~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 357 LTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred HHHHHHHHHHHHHHHHHH
No 490
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=30.16 E-value=1.3e+02 Score=24.23 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 124 QRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 124 qrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
.||..+....-++++.++..|+.+..+|..++..++++
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~~ 134 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQVEKQQER 134 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 491
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.97 E-value=2.5e+02 Score=21.39 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 110 PKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 110 ~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
..+..|-++.=..+.+.+..|..-|..|..++..|..++..+...|..+.
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=29.96 E-value=3.1e+02 Score=22.51 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK---EALGLAYRLL 207 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei---~rL~~~~~~~ 207 (211)
..|+..+...+..+-.+.......+..|...+..+...-..|...=+.|-.+..-...+.+.+.+.+ ..|...+..+
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L 85 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRL 85 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Q ss_pred cCC
Q 048456 208 GEG 210 (211)
Q Consensus 208 ~~~ 210 (211)
+.+
T Consensus 86 n~p 88 (157)
T PF04136_consen 86 NSP 88 (157)
T ss_pred cCC
No 493
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.88 E-value=3.8e+02 Score=23.48 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 149 SVLLPLVSHYETE-CKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 149 ~~L~~~l~~L~~~-~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
..+|..|+.=.+. ......||..|...+..+..+.......|+.|++-.++++.++..+
T Consensus 106 e~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~i 165 (200)
T PF07412_consen 106 ENYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVI 165 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=29.78 E-value=2.8e+02 Score=26.44 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEF----QALMEEKEAL 200 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~----e~L~~Ei~rL 200 (211)
..++..|.++.+.|+...+.|...|..++....-+...+ +.+.+|+.||
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~ 272 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRL 272 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh
No 495
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=29.73 E-value=2e+02 Score=24.39 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|.+-..|+.|...+..+|.+|.+-...-...-.+||.+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 496
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.71 E-value=6.3e+02 Score=25.94 Aligned_cols=80 Identities=19% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEF-----------QALMEEKEA 199 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~-----------e~L~~Ei~r 199 (211)
+.|+..|-.+.++--.+.+.+.++.+.+..-...|...-.+...+-..|++..+-..... -..+.|+++
T Consensus 587 qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~ 666 (741)
T KOG4460|consen 587 QRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQL 666 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q ss_pred HHHHHhhhcCC
Q 048456 200 LGLAYRLLGEG 210 (211)
Q Consensus 200 L~~~~~~~~~~ 210 (211)
+...+.-+++|
T Consensus 667 ~~~~~~~L~~~ 677 (741)
T KOG4460|consen 667 IPDQLRHLGNA 677 (741)
T ss_pred hHHHHHHHHHH
No 497
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.70 E-value=3.8e+02 Score=23.41 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
+..+..+|..+..|..+...|..++.........+...-.....+.+.|.....--......+.+++..|
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=29.68 E-value=4.3e+02 Score=24.00 Aligned_cols=77 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKV---LGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~---L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
..-+..++.++..++.+......++...+.++.. |...+..-+.++...+.+.....+..+.++.++..++..+...
T Consensus 98 ~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 177 (370)
T PRK11578 98 ENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTA 177 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=29.64 E-value=19 Score=28.15 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|.+|+.....+..++..|...+..|+.+...|..+-.+|..+.
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ------------------------------------------H
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=29.59 E-value=3e+02 Score=27.13 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 128 LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 128 ~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
..|+..++.+...+..+.....++..++..++-+...|...-++|+..++.
T Consensus 442 ~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 442 QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Done!