Query 048456
Match_columns 211
No_of_seqs 143 out of 553
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 2.9E-15 9.8E-20 103.6 6.9 52 111-162 1-52 (55)
2 1t2k_D Cyclic-AMP-dependent tr 99.4 1.3E-12 4.5E-17 91.4 9.5 59 111-176 1-59 (61)
3 2wt7_A Proto-oncogene protein 99.4 3.9E-12 1.3E-16 89.7 10.1 55 110-164 1-55 (63)
4 1jnm_A Proto-oncogene C-JUN; B 99.2 1.5E-11 5.3E-16 86.2 7.2 59 111-176 1-59 (62)
5 2dgc_A Protein (GCN4); basic d 99.1 1.5E-10 5.1E-15 81.9 7.0 46 117-162 15-60 (63)
6 1ci6_A Transcription factor AT 99.0 5.4E-10 1.8E-14 78.8 7.5 59 111-176 2-60 (63)
7 1gd2_E Transcription factor PA 99.0 1.4E-09 4.8E-14 78.5 7.8 63 110-172 7-69 (70)
8 1hjb_A Ccaat/enhancer binding 98.5 1.1E-06 3.7E-11 65.8 10.2 67 106-179 10-76 (87)
9 1gu4_A CAAT/enhancer binding p 98.5 1.5E-06 5.1E-11 63.8 10.0 55 106-160 10-64 (78)
10 2oqq_A Transcription factor HY 98.5 4E-07 1.4E-11 59.4 6.1 40 131-177 2-41 (42)
11 3a5t_A Transcription factor MA 98.0 1.5E-07 5.2E-12 72.9 -4.0 51 109-159 35-85 (107)
12 2wt7_B Transcription factor MA 97.9 9.9E-05 3.4E-09 55.5 9.4 64 108-178 24-87 (90)
13 2jee_A YIIU; FTSZ, septum, coi 96.8 0.025 8.6E-07 41.6 11.4 68 133-207 7-78 (81)
14 2w6a_A ARF GTPase-activating p 95.6 0.061 2.1E-06 37.5 7.4 41 134-174 22-62 (63)
15 3s4r_A Vimentin; alpha-helix, 94.9 0.46 1.6E-05 35.2 10.9 64 139-202 23-91 (93)
16 3ol1_A Vimentin; structural ge 94.0 1.6 5.4E-05 33.5 12.7 73 132-204 20-106 (119)
17 3hnw_A Uncharacterized protein 93.8 0.64 2.2E-05 36.8 10.3 54 130-183 73-126 (138)
18 3swy_A Cyclic nucleotide-gated 93.7 0.4 1.4E-05 31.6 7.5 44 136-182 2-45 (46)
19 3o0z_A RHO-associated protein 93.7 2 6.7E-05 35.4 13.3 81 122-204 26-113 (168)
20 1deb_A APC protein, adenomatou 93.4 0.61 2.1E-05 31.5 8.0 46 135-180 6-51 (54)
21 2v71_A Nuclear distribution pr 92.9 2.4 8.3E-05 35.4 12.9 31 135-165 45-75 (189)
22 3cvf_A Homer-3, homer protein 92.9 0.31 1.1E-05 35.5 6.5 48 135-182 9-56 (79)
23 3oja_B Anopheles plasmodium-re 92.4 1.6 5.5E-05 40.2 12.4 68 135-202 505-572 (597)
24 3swf_A CGMP-gated cation chann 92.3 0.55 1.9E-05 33.9 7.1 47 135-184 3-49 (74)
25 3s9g_A Protein hexim1; cyclin 92.2 0.46 1.6E-05 36.2 6.9 40 136-175 41-87 (104)
26 3cvf_A Homer-3, homer protein 91.8 1.7 5.9E-05 31.6 9.3 54 144-204 4-57 (79)
27 3m48_A General control protein 91.4 0.22 7.6E-06 30.7 3.5 26 134-159 2-27 (33)
28 2oxj_A Hybrid alpha/beta pepti 91.2 0.37 1.3E-05 29.8 4.5 26 134-159 3-28 (34)
29 1go4_E MAD1 (mitotic arrest de 91.1 2.5 8.6E-05 32.0 10.0 22 189-210 76-97 (100)
30 3o0z_A RHO-associated protein 91.0 3.9 0.00013 33.6 11.8 57 124-187 82-138 (168)
31 1skn_P DNA-binding domain of S 91.0 0.1 3.5E-06 39.1 2.1 32 108-139 59-90 (92)
32 3cve_A Homer protein homolog 1 90.8 3.4 0.00012 29.5 11.1 48 135-182 3-50 (72)
33 3a7p_A Autophagy protein 16; c 90.4 1.8 6E-05 35.2 9.1 19 134-152 70-88 (152)
34 3c3g_A Alpha/beta peptide with 90.3 0.52 1.8E-05 29.0 4.5 26 134-159 2-27 (33)
35 1kd8_B GABH BLL, GCN4 acid bas 90.0 0.84 2.9E-05 28.6 5.3 27 134-160 3-29 (36)
36 3oja_B Anopheles plasmodium-re 90.0 4.9 0.00017 37.0 13.0 71 132-202 509-579 (597)
37 3c3f_A Alpha/beta peptide with 89.7 0.67 2.3E-05 28.7 4.6 26 134-159 3-28 (34)
38 2wq1_A General control protein 89.6 0.7 2.4E-05 28.4 4.6 26 134-159 2-27 (33)
39 1kd8_A GABH AIV, GCN4 acid bas 89.4 0.68 2.3E-05 29.0 4.5 27 134-160 3-29 (36)
40 3efg_A Protein SLYX homolog; x 89.2 1.1 3.9E-05 32.2 6.4 50 132-181 14-63 (78)
41 2dfs_A Myosin-5A; myosin-V, in 89.1 13 0.00044 38.1 16.3 19 162-180 1025-1043(1080)
42 1gd2_E Transcription factor PA 89.1 1 3.5E-05 32.0 6.0 47 130-183 20-66 (70)
43 3hnw_A Uncharacterized protein 88.7 4.7 0.00016 31.8 10.3 57 144-200 73-129 (138)
44 3cve_A Homer protein homolog 1 88.5 3.3 0.00011 29.6 8.3 43 159-201 6-48 (72)
45 3na7_A HP0958; flagellar bioge 88.4 11 0.00036 31.9 16.3 50 111-160 32-81 (256)
46 3a7p_A Autophagy protein 16; c 87.9 9.4 0.00032 30.9 11.6 36 141-176 98-133 (152)
47 3swk_A Vimentin; cytoskeleton, 87.8 5.2 0.00018 29.0 9.3 68 135-202 3-84 (86)
48 1uo4_A General control protein 87.7 0.75 2.6E-05 28.5 3.9 26 134-159 3-28 (34)
49 2v66_B Nuclear distribution pr 87.4 8.3 0.00028 29.6 11.1 64 134-197 37-100 (111)
50 2dfs_A Myosin-5A; myosin-V, in 87.4 5.7 0.00019 40.7 12.4 35 138-172 983-1017(1080)
51 2hy6_A General control protein 87.0 0.86 3E-05 28.2 3.9 26 134-159 3-28 (34)
52 1fmh_A General control protein 87.0 1.4 4.9E-05 26.5 4.7 29 134-162 3-31 (33)
53 1gu4_A CAAT/enhancer binding p 86.9 4.8 0.00017 29.0 8.5 37 158-208 41-77 (78)
54 2jee_A YIIU; FTSZ, septum, coi 86.7 7.5 0.00026 28.3 10.9 39 137-175 25-63 (81)
55 2v71_A Nuclear distribution pr 86.4 13 0.00045 30.9 13.5 19 131-149 23-41 (189)
56 1ci6_A Transcription factor AT 86.2 2.4 8.3E-05 29.1 6.4 31 153-183 23-53 (63)
57 3mq9_A Bone marrow stromal ant 86.1 8.2 0.00028 34.7 11.7 70 132-201 397-470 (471)
58 2bni_A General control protein 85.7 1.1 3.8E-05 27.8 3.9 26 134-159 3-28 (34)
59 3ghg_A Fibrinogen alpha chain; 85.6 7.7 0.00026 37.2 11.5 29 130-158 108-136 (562)
60 3i00_A HIP-I, huntingtin-inter 84.9 12 0.0004 29.0 11.2 47 127-180 35-81 (120)
61 1hjb_A Ccaat/enhancer binding 84.8 5.9 0.0002 29.1 8.3 38 157-208 40-77 (87)
62 3na7_A HP0958; flagellar bioge 84.8 17 0.00057 30.7 13.4 72 132-203 32-105 (256)
63 1nkp_B MAX protein, MYC proto- 84.6 1.3 4.4E-05 31.6 4.5 24 131-154 46-69 (83)
64 3u59_A Tropomyosin beta chain; 84.4 10 0.00035 27.9 12.4 72 131-202 22-93 (101)
65 2oxj_A Hybrid alpha/beta pepti 84.1 1.5 5.2E-05 27.1 3.9 17 189-205 16-32 (34)
66 2w83_C C-JUN-amino-terminal ki 84.0 10 0.00034 27.5 9.0 62 138-199 8-76 (77)
67 3qh9_A Liprin-beta-2; coiled-c 83.8 11 0.00036 27.6 10.2 56 142-197 22-77 (81)
68 3vmx_A Voltage-gated hydrogen 83.8 5.9 0.0002 26.3 7.0 35 138-172 3-37 (48)
69 1i84_S Smooth muscle myosin he 83.6 8.4 0.00029 39.5 11.6 8 24-31 664-671 (1184)
70 2yy0_A C-MYC-binding protein; 83.3 2.7 9.1E-05 28.2 5.3 31 139-176 19-49 (53)
71 4emc_A Monopolin complex subun 83.0 9.1 0.00031 32.0 9.6 44 135-185 16-59 (190)
72 1i84_S Smooth muscle myosin he 82.4 16 0.00054 37.4 13.1 36 136-171 861-896 (1184)
73 3plt_A Sphingolipid long chain 82.3 15 0.0005 31.6 10.9 78 117-200 99-180 (234)
74 3he5_A Synzip1; heterodimeric 82.3 7.6 0.00026 25.2 6.9 14 189-202 32-45 (49)
75 3a2a_A Voltage-gated hydrogen 81.2 5 0.00017 27.4 6.1 36 138-173 10-45 (58)
76 2r2v_A GCN4 leucine zipper; co 81.1 3.3 0.00011 25.6 4.6 26 134-159 3-28 (34)
77 3he5_A Synzip1; heterodimeric 80.7 9.2 0.00032 24.8 7.0 21 134-154 5-25 (49)
78 3m91_A Proteasome-associated A 80.5 7.1 0.00024 26.0 6.6 6 193-198 42-47 (51)
79 1nlw_A MAD protein, MAX dimeri 79.6 3 0.0001 29.9 4.9 29 131-159 46-74 (80)
80 3m48_A General control protein 79.3 2.2 7.5E-05 26.2 3.4 17 189-205 15-31 (33)
81 2wt7_B Transcription factor MA 79.1 4.9 0.00017 29.8 6.0 34 164-204 52-85 (90)
82 3c3f_A Alpha/beta peptide with 78.7 3.4 0.00012 25.5 4.1 17 189-205 16-32 (34)
83 3a7o_A Autophagy protein 16; c 78.6 10 0.00036 27.1 7.3 44 138-181 31-74 (75)
84 3cl3_D NF-kappa-B essential mo 77.5 5.4 0.00018 31.5 6.1 67 137-206 28-94 (130)
85 3m91_A Proteasome-associated A 77.4 13 0.00045 24.7 7.2 14 166-179 36-49 (51)
86 2ve7_C Kinetochore protein NUF 77.2 3 0.0001 35.8 5.1 61 108-182 117-177 (250)
87 3vkg_A Dynein heavy chain, cyt 77.0 23 0.00078 40.6 12.9 64 140-203 2029-2092(3245)
88 2wvr_A Geminin; DNA replicatio 76.7 16 0.00055 30.9 9.2 35 146-180 115-149 (209)
89 4etp_A Kinesin-like protein KA 76.4 9.6 0.00033 34.7 8.4 35 135-176 6-40 (403)
90 3mq7_A Bone marrow stromal ant 76.4 17 0.00059 28.3 8.6 19 161-179 72-90 (121)
91 2wt7_A Proto-oncogene protein 76.4 12 0.0004 25.4 7.0 29 154-182 24-52 (63)
92 1nkp_A C-MYC, MYC proto-oncoge 76.3 6.1 0.00021 28.7 5.8 34 132-179 52-85 (88)
93 3efg_A Protein SLYX homolog; x 76.3 11 0.00039 26.8 7.2 47 135-181 10-56 (78)
94 1dh3_A Transcription factor CR 75.9 4.3 0.00015 27.1 4.5 27 155-181 24-50 (55)
95 3vmx_A Voltage-gated hydrogen 75.3 15 0.00052 24.3 7.0 42 160-208 4-45 (48)
96 3u1c_A Tropomyosin alpha-1 cha 75.1 23 0.00077 26.2 14.7 50 132-181 23-72 (101)
97 2dgc_A Protein (GCN4); basic d 75.1 4.5 0.00015 27.8 4.5 22 158-179 35-56 (63)
98 2eqb_B RAB guanine nucleotide 74.8 21 0.00073 26.8 8.5 50 132-181 12-61 (97)
99 2c9l_Y EB1, zebra, BZLF1 trans 74.7 15 0.00052 25.1 6.9 23 117-139 7-29 (63)
100 2oqq_A Transcription factor HY 74.5 9.6 0.00033 24.6 5.6 30 155-184 5-34 (42)
101 3c3g_A Alpha/beta peptide with 74.3 5.3 0.00018 24.5 4.1 17 189-205 15-31 (33)
102 2j5u_A MREC protein; bacterial 73.8 1.7 5.9E-05 37.2 2.6 39 164-206 23-61 (255)
103 4emc_A Monopolin complex subun 73.8 23 0.0008 29.5 9.4 43 134-176 22-64 (190)
104 1zme_C Proline utilization tra 73.8 3.4 0.00012 27.6 3.6 25 131-155 43-67 (70)
105 1am9_A Srebp-1A, protein (ster 73.8 5.6 0.00019 28.3 5.0 20 158-177 55-74 (82)
106 1jnm_A Proto-oncogene C-JUN; B 73.5 7.8 0.00027 26.1 5.4 29 154-182 23-51 (62)
107 3m9b_A Proteasome-associated A 73.4 4 0.00014 35.6 4.8 36 135-170 57-92 (251)
108 2bni_A General control protein 73.2 4.5 0.00015 25.0 3.6 17 189-205 16-32 (34)
109 4ath_A MITF, microphthalmia-as 73.0 13 0.00045 27.1 6.8 43 131-184 38-80 (83)
110 2hy6_A General control protein 72.3 6.8 0.00023 24.2 4.3 16 190-205 17-32 (34)
111 3u06_A Protein claret segregat 72.2 12 0.00042 34.1 8.1 35 142-176 6-40 (412)
112 2xdj_A Uncharacterized protein 71.9 25 0.00087 25.4 8.4 42 135-176 23-64 (83)
113 1kd8_B GABH BLL, GCN4 acid bas 71.8 8 0.00027 24.1 4.6 15 191-205 18-32 (36)
114 1t2k_D Cyclic-AMP-dependent tr 71.8 16 0.00054 24.4 6.6 29 154-182 23-51 (61)
115 2xdj_A Uncharacterized protein 71.5 26 0.00089 25.3 8.9 32 148-179 22-53 (83)
116 3m9b_A Proteasome-associated A 70.6 5 0.00017 34.9 4.8 35 138-172 53-87 (251)
117 1nkp_A C-MYC, MYC proto-oncoge 70.3 20 0.0007 25.8 7.4 14 188-201 73-86 (88)
118 1t6f_A Geminin; coiled-coil, c 70.1 8.5 0.00029 24.1 4.4 28 146-173 7-34 (37)
119 2ocy_A RAB guanine nucleotide 69.6 42 0.0014 27.0 11.3 47 134-180 46-92 (154)
120 1nkp_B MAX protein, MYC proto- 69.4 13 0.00045 26.1 6.1 13 166-178 67-79 (83)
121 1uii_A Geminin; human, DNA rep 69.2 31 0.001 25.2 8.4 29 146-174 46-74 (83)
122 3u1c_A Tropomyosin alpha-1 cha 69.2 32 0.0011 25.4 15.4 80 121-200 19-98 (101)
123 1uo4_A General control protein 67.4 7 0.00024 24.1 3.6 16 190-205 17-32 (34)
124 3tnu_B Keratin, type II cytosk 67.3 39 0.0013 25.7 10.8 28 134-161 45-72 (129)
125 2zxx_A Geminin; coiled-coil, c 66.9 10 0.00036 27.5 5.1 34 146-179 34-67 (79)
126 2oto_A M protein; helical coil 66.7 44 0.0015 26.1 12.9 27 136-162 54-80 (155)
127 1f5n_A Interferon-induced guan 66.7 91 0.0031 29.7 14.7 24 181-204 557-583 (592)
128 4etp_A Kinesin-like protein KA 66.5 24 0.00084 31.9 8.7 50 151-200 8-57 (403)
129 1fmh_A General control protein 66.5 12 0.00041 22.4 4.4 28 156-183 4-31 (33)
130 1dip_A Delta-sleep-inducing pe 66.3 5.2 0.00018 28.9 3.3 24 151-174 20-43 (78)
131 3tnu_B Keratin, type II cytosk 66.1 41 0.0014 25.5 11.5 26 134-159 38-63 (129)
132 1dip_A Delta-sleep-inducing pe 66.0 7.1 0.00024 28.2 4.0 23 131-153 21-43 (78)
133 2w83_C C-JUN-amino-terminal ki 65.6 12 0.00042 27.0 5.2 31 149-179 33-63 (77)
134 2v4h_A NF-kappa-B essential mo 65.5 44 0.0015 25.6 11.5 48 115-162 28-78 (110)
135 3q8t_A Beclin-1; autophagy, AT 65.2 38 0.0013 24.8 11.5 49 134-182 6-54 (96)
136 2v4h_A NF-kappa-B essential mo 65.1 44 0.0015 25.6 12.4 47 158-204 43-99 (110)
137 3jsv_C NF-kappa-B essential mo 65.0 41 0.0014 25.1 9.3 49 116-164 7-58 (94)
138 1wlq_A Geminin; coiled-coil; 2 65.0 38 0.0013 24.7 8.7 29 146-174 38-66 (83)
139 2oa5_A Hypothetical protein BQ 64.6 4.2 0.00014 31.3 2.7 23 134-156 10-32 (110)
140 3mq9_A Bone marrow stromal ant 64.4 49 0.0017 29.5 10.3 26 136-161 394-419 (471)
141 2wuj_A Septum site-determining 64.2 7.6 0.00026 26.0 3.7 28 132-159 27-54 (57)
142 2wq1_A General control protein 63.7 12 0.00042 22.9 4.1 16 190-205 16-31 (33)
143 1a93_B MAX protein, coiled coi 63.6 12 0.00042 23.1 4.2 22 157-178 11-32 (34)
144 3bas_A Myosin heavy chain, str 62.5 40 0.0014 24.2 9.1 18 137-154 40-57 (89)
145 3tnu_A Keratin, type I cytoske 61.7 51 0.0017 25.1 12.3 26 135-160 48-73 (131)
146 2er8_A Regulatory protein Leu3 61.7 4.5 0.00016 27.2 2.3 22 131-152 48-69 (72)
147 3tnu_A Keratin, type I cytoske 60.6 53 0.0018 25.0 11.0 24 156-179 80-103 (131)
148 4ati_A MITF, microphthalmia-as 59.6 8.8 0.0003 29.3 3.8 22 163-184 94-115 (118)
149 3oja_A Leucine-rich immune mol 59.6 97 0.0033 27.7 12.1 39 144-182 426-464 (487)
150 1jcd_A Major outer membrane li 59.1 37 0.0012 22.6 7.5 23 135-157 7-29 (52)
151 2efr_A General control protein 58.7 69 0.0024 25.7 12.0 9 192-200 102-110 (155)
152 1nlw_A MAD protein, MAX dimeri 58.5 26 0.00089 24.9 5.9 12 166-177 67-78 (80)
153 2r2v_A GCN4 leucine zipper; co 58.5 20 0.00068 22.1 4.5 16 190-205 17-32 (34)
154 3ljm_A Coil Ser L9C; de novo d 58.1 22 0.00076 21.0 4.5 24 135-158 4-27 (31)
155 2lw1_A ABC transporter ATP-bin 57.9 44 0.0015 23.8 7.2 25 133-157 23-47 (89)
156 2j5u_A MREC protein; bacterial 57.4 5.4 0.00019 34.1 2.5 36 137-176 24-59 (255)
157 4b4t_K 26S protease regulatory 57.2 18 0.0006 33.2 6.0 51 144-201 40-90 (428)
158 2efr_A General control protein 56.7 75 0.0026 25.4 12.1 70 132-201 70-153 (155)
159 1m1j_A Fibrinogen alpha subuni 56.6 62 0.0021 30.5 9.6 14 191-204 142-155 (491)
160 3a2a_A Voltage-gated hydrogen 56.4 35 0.0012 23.2 5.9 39 161-206 12-50 (58)
161 3q0x_A Centriole protein; cent 56.4 61 0.0021 27.6 8.9 52 108-165 160-211 (228)
162 1m1j_B Fibrinogen beta chain; 55.8 1.3E+02 0.0045 28.0 12.4 18 188-205 175-192 (464)
163 3nmd_A CGMP dependent protein 55.8 51 0.0018 23.4 7.0 25 176-200 42-66 (72)
164 1p9i_A Cortexillin I/GCN4 hybr 55.7 18 0.00063 21.3 3.8 17 163-179 9-25 (31)
165 3i00_A HIP-I, huntingtin-inter 54.3 71 0.0024 24.5 11.8 19 133-151 16-34 (120)
166 3u06_A Protein claret segregat 54.1 40 0.0014 30.7 7.9 54 147-200 4-57 (412)
167 3q0x_A Centriole protein; cent 52.3 83 0.0028 26.7 9.1 53 144-196 169-221 (228)
168 3uux_B Mitochondrial division 51.6 1.2E+02 0.004 26.2 11.6 59 134-199 165-223 (242)
169 3s9g_A Protein hexim1; cyclin 51.3 77 0.0026 23.9 11.1 52 132-183 22-74 (104)
170 1hlo_A Protein (transcription 51.2 14 0.00048 25.9 3.4 13 133-145 58-70 (80)
171 2zvf_A Alanyl-tRNA synthetase; 50.8 49 0.0017 25.5 7.0 48 132-179 7-58 (171)
172 2akf_A Coronin-1A; coiled coil 50.6 23 0.0008 21.2 3.8 24 136-159 3-26 (32)
173 1lwu_C Fibrinogen gamma chain; 50.4 56 0.0019 29.0 8.0 18 137-154 17-34 (323)
174 2zqm_A Prefoldin beta subunit 50.2 69 0.0024 23.1 7.4 26 134-159 72-97 (117)
175 3uux_B Mitochondrial division 50.2 54 0.0018 28.3 7.5 80 103-182 147-227 (242)
176 3mov_A Lamin-B1; LMNB1, B-type 50.1 40 0.0014 24.7 6.0 60 138-200 11-70 (95)
177 3bas_A Myosin heavy chain, str 50.0 68 0.0023 23.0 12.7 48 132-179 14-61 (89)
178 1go4_E MAD1 (mitotic arrest de 49.7 31 0.001 26.0 5.3 11 193-203 73-83 (100)
179 1wle_A Seryl-tRNA synthetase; 49.6 1.7E+02 0.0057 27.4 12.3 15 106-123 39-53 (501)
180 2oa5_A Hypothetical protein BQ 49.3 9.7 0.00033 29.3 2.5 23 156-178 11-33 (110)
181 3ghg_A Fibrinogen alpha chain; 49.0 1.9E+02 0.0064 27.8 12.0 17 188-204 138-154 (562)
182 3u59_A Tropomyosin beta chain; 48.9 74 0.0025 23.1 15.2 80 121-200 19-98 (101)
183 2e7s_A RAB guanine nucleotide 48.2 26 0.00088 27.7 4.8 48 134-181 34-81 (135)
184 2xnx_M M protein, M1-BC1; cell 48.0 6.6 0.00023 31.6 1.4 50 158-207 85-134 (146)
185 2wuj_A Septum site-determining 47.9 17 0.00059 24.2 3.3 24 158-181 32-55 (57)
186 1ik9_A DNA repair protein XRCC 47.6 1.2E+02 0.0041 25.2 12.0 68 131-201 138-206 (213)
187 1gk6_A Vimentin; intermediate 47.5 60 0.002 21.6 6.7 40 136-175 4-43 (59)
188 3oja_A Leucine-rich immune mol 47.1 1.6E+02 0.0053 26.3 12.4 15 189-203 450-464 (487)
189 1uii_A Geminin; human, DNA rep 47.1 79 0.0027 23.0 6.9 34 165-205 44-77 (83)
190 1deq_A Fibrinogen (alpha chain 47.0 53 0.0018 30.2 7.4 31 131-161 112-142 (390)
191 3he4_A Synzip6; heterodimeric 46.7 59 0.002 21.4 5.6 26 136-161 21-46 (56)
192 1gk7_A Vimentin; intermediate 46.2 33 0.0011 21.4 4.2 17 160-176 20-36 (39)
193 4h22_A Leucine-rich repeat fli 46.1 94 0.0032 23.5 9.7 64 107-178 6-69 (103)
194 3oa7_A Head morphogenesis prot 45.9 52 0.0018 27.7 6.6 43 134-183 32-74 (206)
195 2oto_A M protein; helical coil 45.8 1E+02 0.0035 23.9 12.3 64 137-200 34-105 (155)
196 2xu6_A MDV1 coiled coil; prote 44.9 57 0.0019 23.2 5.7 46 136-188 11-56 (72)
197 3iv1_A Tumor susceptibility ge 44.8 84 0.0029 22.5 10.8 57 144-200 16-72 (78)
198 3s4r_A Vimentin; alpha-helix, 44.4 88 0.003 22.7 10.9 24 144-167 14-37 (93)
199 3e98_A GAF domain of unknown f 44.4 1.2E+02 0.0041 25.6 8.9 46 134-183 67-112 (252)
200 2yy0_A C-MYC-binding protein; 44.1 46 0.0016 21.9 5.0 15 165-179 24-38 (53)
201 1joc_A EEA1, early endosomal a 43.8 1E+02 0.0035 23.3 8.8 37 136-172 15-51 (125)
202 3htk_A Structural maintenance 42.8 67 0.0023 20.8 8.5 42 137-178 10-51 (60)
203 3q8t_A Beclin-1; autophagy, AT 42.4 97 0.0033 22.6 13.9 73 129-201 22-94 (96)
204 3qne_A Seryl-tRNA synthetase, 42.2 1.8E+02 0.0062 27.2 10.4 12 109-120 14-25 (485)
205 4e61_A Protein BIM1; EB1-like 42.2 76 0.0026 24.1 6.5 11 169-179 27-37 (106)
206 2v66_B Nuclear distribution pr 41.3 1.2E+02 0.0039 23.1 12.9 31 153-183 35-65 (111)
207 3he5_B Synzip2; heterodimeric 40.9 73 0.0025 20.7 7.5 12 148-159 5-16 (52)
208 2ve7_A Kinetochore protein HEC 40.8 43 0.0015 29.4 5.6 16 143-158 189-204 (315)
209 1lwu_C Fibrinogen gamma chain; 40.5 96 0.0033 27.5 7.9 21 142-162 15-35 (323)
210 3he4_A Synzip6; heterodimeric 40.3 78 0.0027 20.9 6.3 33 146-178 17-49 (56)
211 3ra3_B P2F; coiled coil domain 40.2 36 0.0012 19.7 3.3 13 146-158 7-19 (28)
212 3lay_A Zinc resistance-associa 40.2 83 0.0028 25.5 6.9 11 166-176 119-129 (175)
213 1fxk_C Protein (prefoldin); ar 39.5 1.2E+02 0.0039 22.6 7.4 24 136-159 99-122 (133)
214 1m1j_C Fibrinogen gamma chain; 39.4 2.3E+02 0.0077 25.9 13.6 22 132-153 41-62 (409)
215 1ic2_A Tropomyosin alpha chain 39.0 97 0.0033 21.6 10.6 14 166-179 40-53 (81)
216 1fxk_A Prefoldin; archaeal pro 38.7 91 0.0031 22.1 6.3 26 134-159 67-92 (107)
217 4b4t_K 26S protease regulatory 38.4 48 0.0017 30.3 5.8 45 135-179 45-89 (428)
218 1jcd_A Major outer membrane li 37.5 88 0.003 20.7 6.9 22 139-160 4-25 (52)
219 3swk_A Vimentin; cytoskeleton, 37.5 1.1E+02 0.0038 21.8 7.8 31 149-179 3-33 (86)
220 3bbp_D GRIP and coiled-coil do 37.2 35 0.0012 24.2 3.6 13 189-201 51-63 (71)
221 2nrj_A HBL B protein; enteroto 37.1 1.5E+02 0.0053 26.1 8.8 71 131-204 122-192 (346)
222 3e98_A GAF domain of unknown f 36.2 1.1E+02 0.0037 25.8 7.3 29 155-183 67-95 (252)
223 2dq0_A Seryl-tRNA synthetase; 36.1 1.4E+02 0.0046 27.5 8.5 8 191-198 93-100 (455)
224 3mq7_A Bone marrow stromal ant 35.9 1.5E+02 0.0052 22.9 12.3 7 195-201 92-98 (121)
225 1wle_A Seryl-tRNA synthetase; 35.0 2.8E+02 0.0097 25.8 14.6 23 137-159 82-104 (501)
226 3htk_A Structural maintenance 33.9 96 0.0033 20.0 8.6 47 130-176 10-56 (60)
227 3jsv_C NF-kappa-B essential mo 33.8 1.4E+02 0.005 22.1 10.7 11 191-201 64-74 (94)
228 1ses_A Seryl-tRNA synthetase; 33.6 2.7E+02 0.0092 25.1 12.0 26 134-159 30-55 (421)
229 1deb_A APC protein, adenomatou 33.2 1.1E+02 0.0037 20.5 7.9 24 158-181 8-31 (54)
230 1uix_A RHO-associated kinase; 33.1 1.3E+02 0.0044 21.2 8.2 32 137-168 2-33 (71)
231 3mq1_A Mite allergen DER P 5; 32.6 1.5E+02 0.0053 22.3 6.8 58 134-197 6-64 (103)
232 4b4t_M 26S protease regulatory 32.3 39 0.0013 31.0 4.1 8 193-200 65-72 (434)
233 3tq2_A KE1; parallel three hel 32.2 86 0.0029 19.0 5.5 30 150-179 5-34 (36)
234 2jmh_A BLO T 5, mite allergen 32.0 1.8E+02 0.006 22.5 7.7 57 134-196 21-78 (119)
235 2aze_A Transcription factor DP 31.7 1.7E+02 0.006 23.4 7.4 27 118-144 12-38 (155)
236 1wt6_A Myotonin-protein kinase 31.1 1.5E+02 0.0051 21.4 9.7 55 119-176 14-68 (81)
237 4h22_A Leucine-rich repeat fli 31.0 1.7E+02 0.0058 22.0 10.8 9 193-201 70-78 (103)
238 1hwt_C Protein (heme activator 30.9 20 0.00067 24.4 1.5 22 130-151 56-77 (81)
239 2ocy_A RAB guanine nucleotide 30.8 2.1E+02 0.007 22.9 12.2 37 171-207 112-148 (154)
240 1wt6_A Myotonin-protein kinase 30.7 1.5E+02 0.0052 21.4 10.4 16 189-204 53-68 (81)
241 3ra3_A P1C; coiled coil domain 30.5 81 0.0028 18.2 4.1 11 147-157 8-18 (28)
242 3trt_A Vimentin; cytoskeleton, 30.4 1.3E+02 0.0044 20.4 7.4 16 166-181 55-70 (77)
243 3bbp_D GRIP and coiled-coil do 30.1 56 0.0019 23.2 3.7 46 136-181 19-64 (71)
244 2dq0_A Seryl-tRNA synthetase; 30.0 3.2E+02 0.011 24.9 12.8 8 119-126 10-17 (455)
245 3qne_A Seryl-tRNA synthetase, 29.9 3.1E+02 0.011 25.5 9.9 16 165-180 76-91 (485)
246 3s84_A Apolipoprotein A-IV; fo 29.6 2.6E+02 0.009 23.8 10.8 84 120-206 164-249 (273)
247 4g1a_A AQ-C16C19 peptide; heli 29.3 19 0.00067 21.4 1.0 25 135-159 3-27 (32)
248 2gkw_A TNF receptor-associated 28.9 88 0.003 24.8 5.3 25 135-159 3-27 (192)
249 1avy_A Fibritin, gpwac M; bact 28.3 1.6E+02 0.0055 20.9 5.8 23 137-159 13-35 (74)
250 3m0d_C TNF receptor-associated 28.1 1.4E+02 0.0047 20.1 9.9 29 130-158 4-32 (65)
251 1gmj_A ATPase inhibitor; coile 28.1 1.7E+02 0.0059 21.2 9.4 41 118-158 23-63 (84)
252 2wvr_A Geminin; DNA replicatio 27.7 2.7E+02 0.0093 23.4 8.1 15 145-159 121-135 (209)
253 1x8y_A Lamin A/C; structural p 27.5 1.6E+02 0.0056 20.8 11.1 12 165-176 40-51 (86)
254 3coq_A Regulatory protein GAL4 27.4 62 0.0021 22.0 3.6 22 132-153 45-66 (89)
255 2xv5_A Lamin-A/C; structural p 27.2 1.6E+02 0.0055 20.6 8.2 21 147-167 20-40 (74)
256 1zxa_A CGMP-dependent protein 27.0 1.1E+02 0.0037 21.3 4.7 30 130-159 23-52 (67)
257 1x8y_A Lamin A/C; structural p 26.7 1.7E+02 0.0059 20.7 8.2 40 134-173 30-69 (86)
258 2yko_A LINE-1 ORF1P; RNA-bindi 26.5 1.4E+02 0.005 25.4 6.4 43 137-179 4-46 (233)
259 2xv5_A Lamin-A/C; structural p 26.1 1.7E+02 0.0058 20.4 8.2 39 132-170 12-50 (74)
260 2ve7_C Kinetochore protein NUF 25.3 30 0.001 29.5 1.9 48 120-167 136-183 (250)
261 1m1j_A Fibrinogen alpha subuni 25.1 4.4E+02 0.015 24.9 12.3 51 130-187 109-159 (491)
262 2no2_A HIP-I, huntingtin-inter 25.1 2.1E+02 0.0073 21.2 10.6 22 124-145 21-42 (107)
263 1j1d_B Troponin T, TNT; THIN f 24.9 2.2E+02 0.0075 21.3 9.9 26 142-167 45-70 (106)
264 3t98_B Nucleoporin NUP58/NUP45 24.8 2E+02 0.007 20.9 9.6 64 141-204 14-81 (93)
265 4gkw_A Spindle assembly abnorm 24.8 2.6E+02 0.009 22.2 7.8 25 135-159 101-125 (167)
266 1fmh_B General control protein 24.7 1.2E+02 0.004 18.1 5.0 17 166-182 14-30 (33)
267 2ve7_A Kinetochore protein HEC 24.4 1.1E+02 0.0039 26.6 5.5 23 160-182 185-207 (315)
268 2zdi_C Prefoldin subunit alpha 24.1 1.4E+02 0.0047 22.9 5.5 23 136-158 109-131 (151)
269 4ani_A Protein GRPE; chaperone 24.1 3.1E+02 0.011 22.8 8.8 19 136-154 63-81 (213)
270 2i1j_A Moesin; FERM, coiled-co 23.6 35 0.0012 32.3 2.2 24 135-158 338-361 (575)
271 2zvf_A Alanyl-tRNA synthetase; 23.5 1.2E+02 0.0042 23.2 5.1 28 135-162 28-55 (171)
272 1s1c_X RHO-associated, coiled- 23.5 2E+02 0.0067 20.2 7.5 31 136-166 3-33 (71)
273 1pyi_A Protein (pyrimidine pat 23.4 64 0.0022 22.4 3.1 20 132-151 48-67 (96)
274 1ses_A Seryl-tRNA synthetase; 23.2 2.1E+02 0.0072 25.8 7.3 20 137-156 40-59 (421)
275 2fxo_A Myosin heavy chain, car 23.0 2.4E+02 0.0083 21.1 13.3 79 129-207 10-88 (129)
276 2dq3_A Seryl-tRNA synthetase; 23.0 2.6E+02 0.0087 25.3 7.8 13 168-180 76-88 (425)
277 3w03_C DNA repair protein XRCC 22.9 2.1E+02 0.0071 23.5 6.5 28 132-159 145-172 (184)
278 1s1c_X RHO-associated, coiled- 22.8 2E+02 0.007 20.2 8.4 27 150-176 3-29 (71)
279 2ke4_A CDC42-interacting prote 22.6 2.3E+02 0.0079 20.7 8.5 19 189-207 70-88 (98)
280 3lss_A Seryl-tRNA synthetase; 22.6 3.9E+02 0.013 24.9 9.1 12 144-155 56-67 (484)
281 3w03_C DNA repair protein XRCC 22.3 2E+02 0.0069 23.6 6.3 31 130-160 150-180 (184)
282 3mud_A DNA repair protein XRCC 22.2 3.2E+02 0.011 22.3 7.9 25 134-158 130-154 (175)
283 3t97_B Nuclear pore complex pr 22.0 2E+02 0.0069 19.9 6.2 36 130-165 8-43 (65)
284 1fzc_C Fibrin; blood coagulati 21.6 49 0.0017 29.4 2.6 25 135-159 7-31 (319)
285 2no2_A HIP-I, huntingtin-inter 21.4 2.5E+02 0.0087 20.8 13.5 25 152-176 14-38 (107)
286 1c94_A Retro-GCN4 leucine zipp 21.2 49 0.0017 20.3 1.7 27 175-201 10-36 (38)
287 1gk4_A Vimentin; intermediate 21.2 2.2E+02 0.0075 19.9 12.1 22 158-179 31-52 (84)
288 3plt_A Sphingolipid long chain 20.8 3.9E+02 0.013 22.7 9.5 23 135-157 100-122 (234)
289 1l8d_A DNA double-strand break 20.8 2.3E+02 0.008 20.1 11.7 27 135-161 13-39 (112)
290 3rrk_A V-type ATPase 116 kDa s 20.7 2.4E+02 0.0082 24.1 6.9 40 134-173 94-136 (357)
291 1lrz_A FEMA, factor essential 20.7 3.6E+02 0.012 23.7 8.2 8 130-137 221-228 (426)
292 1ic2_A Tropomyosin alpha chain 20.6 2.2E+02 0.0074 19.7 12.0 32 136-167 24-55 (81)
293 3lss_A Seryl-tRNA synthetase; 20.3 5.2E+02 0.018 24.0 10.6 27 135-161 40-66 (484)
294 1kd8_A GABH AIV, GCN4 acid bas 20.2 1.7E+02 0.0056 18.1 5.5 10 193-202 20-29 (36)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.58 E-value=2.9e-15 Score=103.60 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=48.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
||.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|++.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999987654
No 2
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.41 E-value=1.3e-12 Score=91.37 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=53.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
||.+|+.+||++|++||.||++|+++||.+|..|+.+|..|..+|..|+ .|+..|++.|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~-------~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999886 6666666654
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.37 E-value=3.9e-12 Score=89.70 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 110 PKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKV 164 (211)
Q Consensus 110 ~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~ 164 (211)
+||.+|+.+||+||+++|.||++|+.+|+.+|..|+.+|..|..+|..|+.++..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999888744433
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.25 E-value=1.5e-11 Score=86.21 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=50.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|+.+|..+||+||++||+||+.|+.+||.+|..|+.+|..|..++..|. .|+..|++.|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~-------~e~~~Lk~~l 59 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR-------EQVAQLKQKV 59 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTTC---
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999886 5566665544
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.11 E-value=1.5e-10 Score=81.89 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=41.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 117 LANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 117 l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
.+||+||++||+||++|+.+||.+|..|+.+|..|..++..|.+++
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999999999888886543
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.05 E-value=5.4e-10 Score=78.85 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=48.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|+.++..+||.+|+|+|.||++++++|+.++..|+.+|..|..+++.|+ .|+..|+.-|
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~-------~E~~~Lk~ll 60 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA-------KEIQYLKDLI 60 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 6778889999999999999999999999999999999999999999986 6677776654
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.98 E-value=1.4e-09 Score=78.55 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=49.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 110 PKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREM 172 (211)
Q Consensus 110 ~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~L 172 (211)
+...||...||.|++..|+||.+||.+||.+|..|+..+..|...+..|..++..|..||..|
T Consensus 7 ~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 7 EPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344678899999999999999999999999999999888876655555555555555555444
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.49 E-value=1.1e-06 Score=65.79 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 106 HGKGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 106 ~~~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
...|++-..|-.+|.++|++||+++++-..+++.+|..|+.+|..|..+|..|. .|...|+..|..+
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~-------~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS-------RELSTLRNLFKQL 76 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC
Confidence 445566666667999999999999999999999999999999999999999876 5666666655443
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.46 E-value=1.5e-06 Score=63.82 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=46.9
Q ss_pred CCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 106 HGKGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 106 ~~~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
...|++-..|-.+|.++|++||+++++-..+++.+|..|+.+|..|..+|..|..
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555579999999999999999999999999999999999999988763
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=98.46 E-value=4e-07 Score=59.40 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMME 177 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~ 177 (211)
|+|+.+||.+++.|+..|++|..+|++|+ +||.+|++.+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq-------~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQ-------NENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHhc
Confidence 68999999999999999999999999997 89999998764
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.00 E-value=1.5e-07 Score=72.91 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=41.6
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 109 GPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 109 d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.-|..||-++||.+|+.+|.||.+.+++||.++..|+.+...|..+...+.
T Consensus 35 ~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 35 QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMK 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999888877665555555544443
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.87 E-value=9.9e-05 Score=55.52 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=50.0
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
...|-.||-++||.+|+-.|.||...+.+||..+..|..+...|..+++.+. .|-..++++++.
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~-------~e~d~~k~k~~~ 87 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA-------RERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3668899999999999999999999999999998888777666666655554 555555555544
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.81 E-value=0.025 Score=41.62 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK----EALGLAYRLL 207 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei----~rL~~~~~~~ 207 (211)
-++.||.+|+.+-..+.-|..++..|..++..|..+|.+++..-..|. ..|+.|+.|. +||+.++|.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~-------~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE-------RENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888888888776666666666666666666666655554444443 3555566665 4556666554
No 14
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.57 E-value=0.061 Score=37.51 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
+..=|.+|++|..-|+.|..++..++...+.|..||..|+.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 44568999999999999999999999999999999999974
No 15
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.85 E-value=0.46 Score=35.25 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 139 KEIDNEEARLSVLLPLVSHYETECKV-----LGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 139 ~kv~~L~~en~~L~~~l~~L~~~~~~-----L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
.+|..|+.+|..|..++..++..... -..+-..|+.++..+..+..-.+...+.|..++++++.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888887777654322 34566677777777766655555555667777777654
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.00 E-value=1.6 Score=33.51 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKV--------------LGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~--------------L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
.||.+|..++..+..+++.|..++..++..... +.++...||..+....-...-.+...+.|++||
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777666666655543322 223333344333332222222334567788888
Q ss_pred HHHHHHH
Q 048456 198 EALGLAY 204 (211)
Q Consensus 198 ~rL~~~~ 204 (211)
.-|+...
T Consensus 100 ~FLKk~h 106 (119)
T 3ol1_A 100 AFLKKLH 106 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.80 E-value=0.64 Score=36.82 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.+...+.|+.++..+..|+..|..++..++-++..+..++..|+.++..|+.+.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467777778777777777777777777777777777777777776666654
No 18
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=93.74 E-value=0.4 Score=31.63 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+||.+|..|+.-...|..+++.|..+| .+-...|++++..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 688888888888888888888887666 44566899999999875
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.68 E-value=2 Score=35.41 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHH
Q 048456 122 SAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE-----TAAKE--AEFQALM 194 (211)
Q Consensus 122 SAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q-----~~~~~--a~~e~L~ 194 (211)
+=.-.|.||.+ .++-..++.++..+.+|..++..|+.....|..+...|...|..=... ..+.+ +.+..|.
T Consensus 26 sE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~ 103 (168)
T 3o0z_A 26 SDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQ 103 (168)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556665 777777888888888888888888877777777777777666543222 12222 3667788
Q ss_pred HHHHHHHHHH
Q 048456 195 EEKEALGLAY 204 (211)
Q Consensus 195 ~Ei~rL~~~~ 204 (211)
.|+++++...
T Consensus 104 ~El~~~k~~~ 113 (168)
T 3o0z_A 104 EEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 20
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=93.41 E-value=0.61 Score=31.49 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+.|-.+|..|..||..|+.++..-..+...|++|-..+|.-+..|.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 6788899999999999999998888888888888888777665554
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.94 E-value=2.4 Score=35.40 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVL 165 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L 165 (211)
.+||..+..++..+..|..++..|..++..+
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555444444444444444443333
No 22
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.86 E-value=0.31 Score=35.55 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
+++..+++.++.+|..|..+|..|++....-..+...++..+..+-+.
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777766666666666666666555443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.43 E-value=1.6 Score=40.23 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
+.|+..++.++...+.+..++..++++......+-..|+.++..++.+..-+......+++|.+.++.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444555555555555555543333444445555544433
No 24
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=92.29 E-value=0.55 Score=33.91 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETA 184 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~ 184 (211)
.+||.+|..|+.-...|..+++.|..+| ..-...||+|+..|+.+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 4688889988888888888888887666 4556689999999998764
No 25
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=92.17 E-value=0.46 Score=36.16 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLP-------LVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~-------~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
+||.++..++.+|..|.. +|..|..+...|.+||+.|++.
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666666655 5555555555555555555543
No 26
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=91.77 E-value=1.7 Score=31.60 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
|+.++.++..++ +.+..+|..|+.++..+++...-.....+.++.|+.++-..+
T Consensus 4 l~~e~e~~~~kl-------q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 4 MAAEREETQQKV-------QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp ------CTTHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 444688888888888888776555556677777776664433
No 27
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.37 E-value=0.22 Score=30.72 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..||.+|..|-.+|..|..+|..|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46799999999999999999888875
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.24 E-value=0.37 Score=29.85 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..||.+|..|-.+|..|..++..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 57899999999999988888888775
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.09 E-value=2.5 Score=32.00 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 048456 189 EFQALMEEKEALGLAYRLLGEG 210 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~~~~~~ 210 (211)
..+.|.+||++|+.....+..|
T Consensus 76 ~~e~Lq~E~erLr~~v~~lEeg 97 (100)
T 1go4_E 76 DHSQLQAECERLRGLLRAMERG 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 5588999999999988777655
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.02 E-value=3.9 Score=33.61 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 124 QRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 124 qrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
+++|-+--.-+.+|+.++..|+.+...+..++..+ ..+|+.|..++..|+.+..-.+
T Consensus 82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 44555555566666666666666666666665555 5888889999888888764444
No 31
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=91.02 E-value=0.1 Score=39.13 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.8
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKK 139 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~ 139 (211)
...+.+||-.+||.+|++.|.||..-+..|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45688899999999999999999998888764
No 32
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.76 E-value=3.4 Score=29.55 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.++..+++.++.+|..|..+|..+++....-..+...++..+..+-..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888777777777777777666554
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.39 E-value=1.8 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLL 152 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~ 152 (211)
|..|+..+..|+.++..|.
T Consensus 70 I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 34
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.31 E-value=0.52 Score=29.03 Aligned_cols=26 Identities=4% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..||.+|..|-.+|..|..+++.|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56899999999999999998888775
No 35
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.99 E-value=0.84 Score=28.61 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
+..||.+|..|-.+++.|..+|..|+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678999999999999999998888763
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.97 E-value=4.9 Score=36.98 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
+-+..++.+.+.++.++..+..++...+.++..+..|...|+.+++...++..-..-.++.++.|+..|..
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666666666666655555544433222334445555554433
No 37
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=89.74 E-value=0.67 Score=28.69 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..||.+|..|-.+|..|..+|+.|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 67899999999999999988888875
No 38
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=89.59 E-value=0.7 Score=28.44 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+.+||.+|..|-.++..|..+|+.|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56899999999999999998888775
No 39
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=89.37 E-value=0.68 Score=29.03 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
+..||.+|..|-.+++.|..+|..|+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999999998888863
No 40
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.22 E-value=1.1 Score=32.20 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
..|.+||.++..++.-+.+|...|..-+++...|....+.|..++..++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35688888888888888888888888888888888888888888777664
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.08 E-value=13 Score=38.11 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048456 162 CKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 162 ~~~L~~EN~~Lk~~L~~L~ 180 (211)
...|..||..|++++..|+
T Consensus 1025 v~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.05 E-value=1 Score=31.97 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
..+|=+-=+..+..|+. +|..|...+..|..||..|+.++..|..+.
T Consensus 20 QRafReRK~~~i~~LE~-------~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 20 QRAFRKRKEDHLKALET-------QVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555665544 444555555566788888888887776654
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.66 E-value=4.7 Score=31.76 Aligned_cols=57 Identities=12% Similarity=0.000 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
++.++..|..++..+..+...|..+...++.++..+.++..-....+..|.+++.+|
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433222222333344444444
No 44
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.46 E-value=3.3 Score=29.61 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 159 ETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 159 ~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
.+..+.+..+|..|+.++..+++...-.....+.++.|+.++-
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777777776665444444555666665553
No 45
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.37 E-value=11 Score=31.91 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=24.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 111 KRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 111 KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
+.+..+..-.......-...+..+.+++.++..++.+...+..++...+.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444445555555555555555555555555554443
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.86 E-value=9.4 Score=30.89 Aligned_cols=36 Identities=11% Similarity=-0.063 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
++.|+.|...|..++..++.....|..||..|-++.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666666666665553
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.81 E-value=5.2 Score=29.04 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETE--------------CKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~--------------~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
.+|..++..+..+++.|..++..++-. ...+.++-..||..+..+.-...-.++..+.|++||.-|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665555555544433 223333444455544444443344456778888888777
Q ss_pred HH
Q 048456 201 GL 202 (211)
Q Consensus 201 ~~ 202 (211)
+.
T Consensus 83 kk 84 (86)
T 3swk_A 83 KK 84 (86)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 48
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=87.66 E-value=0.75 Score=28.50 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..||.+|..|-.+|..|..+|+.|.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46899999999999999988888775
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.41 E-value=8.3 Score=29.60 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
+..|+..+..|...+..|...|-.|.+.+..|....+.--.-|..++..-..---.|-.|..|+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666666666666666666666666666555555555555444322222333444444
No 50
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.35 E-value=5.7 Score=40.71 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREM 172 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~L 172 (211)
+.+|..|+.++..|..++..+..++..+...+..+
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 51
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=87.01 E-value=0.86 Score=28.21 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..||.+|..|-.+|..|..++..|.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57899999999999999998888875
No 52
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=86.97 E-value=1.4 Score=26.50 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
+..||..|.+-+.+|-.|..+++.|+.+|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 34567777777777776666666665443
No 53
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=86.90 E-value=4.8 Score=28.96 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048456 158 YETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLLG 208 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~~ 208 (211)
++.....|..||..|+.++. .|..|+..|+.++-++|
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~--------------~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCC
Confidence 33444444555555555443 45556666655554443
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.69 E-value=7.5 Score=28.35 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
|.-++..|..+|..|..+...+......|..+|..|++.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444444444444444444455555555554
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.43 E-value=13 Score=30.91 Aligned_cols=19 Identities=5% Similarity=0.024 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLS 149 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~ 149 (211)
++-+.+|+.....++....
T Consensus 23 ~q~~~~le~El~EFqesSr 41 (189)
T 2v71_A 23 KQSFQEARDELVEFQEGSR 41 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666666665444433
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.19 E-value=2.4 Score=29.05 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 153 PLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 153 ~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.++..|+.+...|..+|..|+.++..|+.+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666777777788888888877766654
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.05 E-value=8.2 Score=34.66 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETEC----KVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~----~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
.+...|++++..++.-...+++|-++..... ..|..+-.+-..+++.++.+..-..+..+.+..||+++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555554444444444443333222 233344444445677777766666666677777777775
No 58
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=85.73 E-value=1.1 Score=27.75 Aligned_cols=26 Identities=4% Similarity=0.161 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..||.+|..|-.+|..|..+|+.|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 57899999999999999988888775
No 59
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.64 E-value=7.7 Score=37.17 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
+.+|-++||++++.|+.++..-..+|..|
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvL 136 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLL 136 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333
No 60
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.93 E-value=12 Score=28.97 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 127 RLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 127 R~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+..-+.|+.+|+.+|..|+.+..+ -....+....||..|+..+..++
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e-------~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAE-------QQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444443 33334445567777777776663
No 61
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=84.80 E-value=5.9 Score=29.09 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048456 157 HYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLLG 208 (211)
Q Consensus 157 ~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~~ 208 (211)
.++.....|..||..|+.++. .|..|+..|+..+-+++
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~--------------~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCc
Confidence 344445555666666666554 45556666665555444
No 62
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.79 E-value=17 Score=30.66 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETA-AKE-AEFQALMEEKEALGLA 203 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~-~~~-a~~e~L~~Ei~rL~~~ 203 (211)
..+.+|+..+..+......+...+..+..+...+..+-..++.++...+.+.. ++. -.+++|..||+.++..
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKER 105 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777777777777777777777777766655431 111 1446677777665443
No 63
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.63 E-value=1.3 Score=31.57 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPL 154 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~ 154 (211)
-.||..|+.+++.|+.+...|..+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666555444444333
No 64
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.40 E-value=10 Score=27.90 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGL 202 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~ 202 (211)
..-.+.+|.+++.++..+..+...|..|++.+..|..+-..+..++.......-..+-.-.....||..|..
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666677777766666666666666666555544433333233334445555533
No 65
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=84.09 E-value=1.5 Score=27.12 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048456 189 EFQALMEEKEALGLAYR 205 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~ 205 (211)
.++.|..||.||+..++
T Consensus 16 ~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 16 KNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 44555566666665543
No 66
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.03 E-value=10 Score=27.47 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSH-------YETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEA 199 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~-------L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~r 199 (211)
=..|..|-.||.+|...-.. |-.....|+.|+..|+..+..+.+-..-.+..+..|.+|+.+
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666544333 333455556666666666666655443333344445555543
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=83.79 E-value=11 Score=27.58 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
..|-.|...|.-+|+.+..+..+-.-.-+.=+..+..|.++.-.+++..+.|..++
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444555555555555544444444444455667777777777777666666654
No 68
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=83.76 E-value=5.9 Score=26.27 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREM 172 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~L 172 (211)
|.++..|..-|..|..++..|+..|..+..|+..|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34555555555555555555555554444444333
No 69
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=83.58 E-value=8.4 Score=39.46 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.2
Q ss_pred hhhhhhhh
Q 048456 24 RSASDSLA 31 (211)
Q Consensus 24 r~~sd~~~ 31 (211)
.+..++++
T Consensus 664 ~~l~~L~~ 671 (1184)
T 1i84_S 664 EQLTKLMT 671 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344443
No 70
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.28 E-value=2.7 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 139 KEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 139 ~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
..|..|+.||.+|..++..|. .++.+|+.+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~-------~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIV-------EENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 345566666666666655554 5555555544
No 71
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=83.00 E-value=9.1 Score=32.03 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAA 185 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~ 185 (211)
+.-..-|+.|..||..|..++.... .|+..|+.+|+.++.+...
T Consensus 16 ~~ad~LV~~L~~En~~L~~ql~~k~-------~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 16 DSADLLVANLVNENFVLSEKLDTKA-------TEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhh
Confidence 3334456777777777777777665 6666777777777666533
No 72
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.38 E-value=16 Score=37.44 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNRE 171 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~ 171 (211)
+|+.++..++.....+...+..++.+...|..+...
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~ 896 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL 896 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333333333333333333
No 73
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=82.30 E-value=15 Score=31.64 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 048456 117 LANRVSA-QRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA---EFQA 192 (211)
Q Consensus 117 l~NReSA-qrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a---~~e~ 192 (211)
++||+.. +-+|.||..-..++. .|.... --..+|..|+++...+.+++-.-..+|..+..+. ++++ .+.+
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~-lKEa~~~~f~A 172 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITREK-LKAAYSYMFDS 172 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence 5677755 667777776555553 232221 1236788999999999999988888999988876 6665 3344
Q ss_pred HHHHHHHH
Q 048456 193 LMEEKEAL 200 (211)
Q Consensus 193 L~~Ei~rL 200 (211)
|.+--+.+
T Consensus 173 l~E~aEK~ 180 (234)
T 3plt_A 173 LRELSEKF 180 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 74
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=82.26 E-value=7.6 Score=25.16 Aligned_cols=14 Identities=21% Similarity=0.029 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 048456 189 EFQALMEEKEALGL 202 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~ 202 (211)
+...|.+||-.|+.
T Consensus 32 liaylekeianlrk 45 (49)
T 3he5_A 32 LIAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55667777776654
No 75
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=81.22 E-value=5 Score=27.42 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMK 173 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk 173 (211)
|.++..|...|-.|..+|..|+.+|.....|+..|.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666655555554443
No 76
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=81.08 E-value=3.3 Score=25.61 Aligned_cols=26 Identities=4% Similarity=0.149 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+.+||.+|..|-.++..|..+++.|.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 57899999999988888888888775
No 77
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=80.72 E-value=9.2 Score=24.76 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPL 154 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~ 154 (211)
+..||.+|..|+.+|..|...
T Consensus 5 vaqlenevaslenenetlkkk 25 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh
Confidence 456777777777777666554
No 78
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.47 E-value=7.1 Score=26.03 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=2.2
Q ss_pred HHHHHH
Q 048456 193 LMEEKE 198 (211)
Q Consensus 193 L~~Ei~ 198 (211)
|++||+
T Consensus 42 Lkeele 47 (51)
T 3m91_A 42 LREEVD 47 (51)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 79
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.60 E-value=3 Score=29.91 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
..||..|+.+...|..++..|..++..|.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888777766665555544444
No 80
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=79.32 E-value=2.2 Score=26.25 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048456 189 EFQALMEEKEALGLAYR 205 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~ 205 (211)
.|..|..||.||+.+++
T Consensus 15 ~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 15 KNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHhh
Confidence 34556666666665543
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=79.07 E-value=4.9 Score=29.83 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 164 VLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 164 ~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
.|..++..|..++..|.. .+..+..|++.++.-+
T Consensus 52 ~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344444444444444443 2334445555555444
No 82
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=78.69 E-value=3.4 Score=25.52 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048456 189 EFQALMEEKEALGLAYR 205 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~ 205 (211)
.+..|..||.||+.+++
T Consensus 16 ~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 16 XLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 34455666666665554
No 83
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=78.57 E-value=10 Score=27.10 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
|.++..|+...+-=..-.+.|.-+.-.+.-||.-|.++|+.|++
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34444444444433444556666677778999999999988765
No 84
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=77.52 E-value=5.4 Score=31.51 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
||.++..+...+..+..++..+.+ .+...|..|+.+++.|+....+-......=+.-+-.|+.+|..
T Consensus 28 Leek~~~~e~~~~~~~~Elee~kq---q~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~ 94 (130)
T 3cl3_D 28 LEGRARAASEQARQLESEREALQQ---QHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQ 94 (130)
T ss_dssp -----------------------C---TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333322 2345677777777777766655554444344444555555544
No 85
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=77.44 E-value=13 Score=24.72 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 048456 166 GKMNREMKEMMEAL 179 (211)
Q Consensus 166 ~~EN~~Lk~~L~~L 179 (211)
..+-..|+.+|..|
T Consensus 36 R~el~~Lkeele~L 49 (51)
T 3m91_A 36 RQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444455544443
No 86
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=77.22 E-value=3 Score=35.78 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=30.8
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.++||.+|+|+-=.-=.+-|+-+..-++++ ..+..++..++..++ .||+.++.+|+.|+.+
T Consensus 117 P~~~Rt~~iLSalINF~~FRE~~~~~~~e~-------~~~~e~~~~~i~ql~-------~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 117 PKAKRTSRFLSGIINFIHFREACRETYMEF-------LWQYKSSADKMQQLN-------AAHQEALMKLERLEKE 177 (250)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTTHHHHHHHHHH-------HHHHHHHHSCC-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 478999999876555555555554433333 233333344444443 4455555555555443
No 87
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.95 E-value=23 Score=40.61 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 140 EIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLA 203 (211)
Q Consensus 140 kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~ 203 (211)
++...+.+.+++.++|+.|+.++..+..|...|+.+++..+.....-+.+...|..|-.|-...
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 3444566667777777788888888888888888888887777666666777777776654433
No 88
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=76.70 E-value=16 Score=30.91 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
.||..|..+|..++.+...|..||..|+.-...++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888888876544433
No 89
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.43 E-value=9.6 Score=34.66 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
+.|+.++..|+.+..+|...+..+ ..++..|++++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~ 40 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDT-------ELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 344444444444444444433333 34445554443
No 90
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=76.38 E-value=17 Score=28.26 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048456 161 ECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 161 ~~~~L~~EN~~Lk~~L~~L 179 (211)
+...|..|+..|.+.|+..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444433
No 91
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.38 E-value=12 Score=25.38 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.+..|+.+...|..+|..|+..+..|..+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666677777777766555443
No 92
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=76.33 E-value=6.1 Score=28.66 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.||..|+.+...+..+.. .|..+|..|+.+|+.|
T Consensus 52 ~YI~~L~~~~~~l~~~~~--------------~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEED--------------LLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 566666655555544333 2345566666666554
No 93
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=76.26 E-value=11 Score=26.82 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.+||.++..|+...+.+...|..|......-..+...|+.++..|..
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777766555555555555555555544
No 94
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=75.89 E-value=4.3 Score=27.12 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+..|+.+...|..||..|+.++..|..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566777777777766654
No 95
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=75.32 E-value=15 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048456 160 TECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLLG 208 (211)
Q Consensus 160 ~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~~ 208 (211)
++...|..-|..|-+++..|+..+ ..+..||+||+.++.+-|
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c-------~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSC-------SEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHHcC
Confidence 344455666777777777776654 556789999988876543
No 96
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.07 E-value=23 Score=26.18 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.-.+.+|.+++.++..+..+...|..|++.+..|..+-..+..+|.....
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666665655555555554433
No 97
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.07 E-value=4.5 Score=27.80 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|+.+...|..+|..|+.++..|
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444443
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.79 E-value=21 Score=26.75 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
.-+..|+.++.....+...|...+..-.........++..+...|..|..
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888777788888888888888887754
No 99
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=74.67 E-value=15 Score=25.09 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=17.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 048456 117 LANRVSAQRSRLRNLAYMEKLKK 139 (211)
Q Consensus 117 l~NReSAqrSR~RKk~yieeLE~ 139 (211)
-+||.+++++|.|=+..++-...
T Consensus 7 yknr~asrk~rakfkn~lqh~r~ 29 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYRE 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999988776655443
No 100
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.51 E-value=9.6 Score=24.57 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALENETA 184 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~ 184 (211)
+..|+.....|...|.+|..++..|+.+..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555555666788888888888877653
No 101
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=74.31 E-value=5.3 Score=24.51 Aligned_cols=17 Identities=0% Similarity=-0.093 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048456 189 EFQALMEEKEALGLAYR 205 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~ 205 (211)
.+..|..||.||+..++
T Consensus 15 ~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 15 KXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 34455566666665544
No 102
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=73.83 E-value=1.7 Score=37.22 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 164 VLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 164 ~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
.|..||..|+.++..|+.+. ...+.|+.|-++|+.+++.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLDI 61 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 34456666666666555543 3445566677777766553
No 103
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=73.80 E-value=23 Score=29.52 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|..|-.++..|..++.....++..|+++...+...-..+..++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4555555555555555555555555555544444444444433
No 104
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=73.80 E-value=3.4 Score=27.59 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLV 155 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l 155 (211)
..|++.||.++..|+..+..|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999988887776654
No 105
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.79 E-value=5.6 Score=28.35 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMME 177 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~ 177 (211)
|+.+...|..+|..|+..++
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 106
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.54 E-value=7.8 Score=26.13 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.+..|+.....|..+|..|+.++..|..+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666667777777766655554
No 107
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=73.35 E-value=4 Score=35.56 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNR 170 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~ 170 (211)
.+|+.++..|...|..|...+..++++...|..|+.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444433333333333
No 108
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.22 E-value=4.5 Score=25.00 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048456 189 EFQALMEEKEALGLAYR 205 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~ 205 (211)
.+..|..||.||+.++|
T Consensus 16 ~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 16 KGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 34455666666665544
No 109
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=73.05 E-value=13 Score=27.15 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETA 184 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~ 184 (211)
-.||..|...++.+..+ +.....|...|..|..+++.||-++.
T Consensus 38 vdYI~~Lq~e~~r~~e~-----------e~r~k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDL-----------ENRQKKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 46777776655544322 23344567889999999999988874
No 110
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.29 E-value=6.8 Score=24.17 Aligned_cols=16 Identities=19% Similarity=-0.018 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 048456 190 FQALMEEKEALGLAYR 205 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~~~ 205 (211)
+..|..||.||+.++|
T Consensus 17 ~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 17 NYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3445566666665554
No 111
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.24 E-value=12 Score=34.13 Aligned_cols=35 Identities=9% Similarity=-0.092 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
..|+.|..+|..++..++++...+..++..++++|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566555555566666666654
No 112
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=71.94 E-value=25 Score=25.37 Aligned_cols=42 Identities=5% Similarity=0.190 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
-+|-.++..|+.|+..|..++..+..+...+....+.+-..|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555555555544444
No 113
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=71.84 E-value=8 Score=24.13 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHh
Q 048456 191 QALMEEKEALGLAYR 205 (211)
Q Consensus 191 e~L~~Ei~rL~~~~~ 205 (211)
..|..||.||+..++
T Consensus 18 ~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 18 WHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 334455555554443
No 114
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.81 E-value=16 Score=24.44 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 154 LVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 154 ~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
.+..|+.....|..+|..|+.++..|+.+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666677666665555443
No 115
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=71.48 E-value=26 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 148 LSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 148 n~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
...|..++..|+++...|...+.++.-+|..+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555555544444444444444444444
No 116
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=70.63 E-value=5 Score=34.89 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREM 172 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~L 172 (211)
|.++..|+.++..|..++..|......+..|...|
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~L 87 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLAL 87 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333333
No 117
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.34 E-value=20 Score=25.81 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 048456 188 AEFQALMEEKEALG 201 (211)
Q Consensus 188 a~~e~L~~Ei~rL~ 201 (211)
..++.|+.+|+.|+
T Consensus 73 ~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 73 KRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 35566666666553
No 118
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=70.13 E-value=8.5 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMK 173 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk 173 (211)
.||..|...+..-+.+...|..||.+|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5778888888888888888888888775
No 119
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.59 E-value=42 Score=26.99 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALE 180 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~ 180 (211)
+..|+.++.....+...|..++..-.........+...+...|..|.
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666555555556666666666666653
No 120
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.35 E-value=13 Score=26.12 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 048456 166 GKMNREMKEMMEA 178 (211)
Q Consensus 166 ~~EN~~Lk~~L~~ 178 (211)
..+|..|+.+|..
T Consensus 67 ~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 67 KRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 121
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=69.24 E-value=31 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
.||..|..+|..++.+...|..+|..|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777666666666666654
No 122
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.19 E-value=32 Score=25.36 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 121 VSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 121 eSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
+.|..--..-..-+..+|.+...++.++..|..++..++.++..+...-...+..|..-+....--++.+..|...|+-|
T Consensus 19 e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 19 ENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455566666666666666666666666666655555555555555554444444444555555555443
No 123
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=67.44 E-value=7 Score=24.13 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 048456 190 FQALMEEKEALGLAYR 205 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~~~ 205 (211)
|..|..||.||+.+++
T Consensus 17 n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 17 LYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHc
Confidence 4445556666655543
No 124
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.30 E-value=39 Score=25.67 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
|..|+.++..+...+..|...+..++..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 125
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=66.89 E-value=10 Score=27.46 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.||..|..+|..++.+...|..||..|+.-+...
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888887644433
No 126
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=66.73 E-value=44 Score=26.08 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
+|+.++..|...|..|..++..+..++
T Consensus 54 eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 54 ELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555554444444444444
No 127
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=66.67 E-value=91 Score=29.73 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHH
Q 048456 181 NETAAKEA---EFQALMEEKEALGLAY 204 (211)
Q Consensus 181 ~q~~~~~a---~~e~L~~Ei~rL~~~~ 204 (211)
+...++++ ..+.|.+||+.|+...
T Consensus 557 ~~~~~~~g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 557 QEQLLKEGFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445553 5588999999997763
No 128
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.53 E-value=24 Score=31.94 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 151 LLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 151 L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
|..++..|+++...|..+...++.++..+.++..-.+.+-..|..+++.|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444445555555555555444433333444444444444
No 129
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=66.48 E-value=12 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 156 SHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 156 ~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
+.|+.+.....+||-+|.+.+..|+.++
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3444444555688888888777776653
No 130
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.25 E-value=5.2 Score=28.90 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 151 LLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 151 L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
|+.+|..|...+..|..||..||.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445566666664
No 131
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.06 E-value=41 Score=25.52 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
|.+|-..|+.|+.+...|..+...|+
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444444443
No 132
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=65.95 E-value=7.1 Score=28.19 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLP 153 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~ 153 (211)
|..|.+|+.++.+|+.||.-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776654
No 133
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=65.63 E-value=12 Score=26.98 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 149 SVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 149 ~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..|.++|..|..+...|..|+..+++-...+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333
No 134
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.47 E-value=44 Score=25.61 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 048456 115 RLLANRVSAQRSRLRNLAYMEKLKKEIDNEEA---RLSVLLPLVSHYETEC 162 (211)
Q Consensus 115 R~l~NReSAqrSR~RKk~yieeLE~kv~~L~~---en~~L~~~l~~L~~~~ 162 (211)
-+-.|=.+|...=..|+.-+.+|..++..+.. .+.-|.+|+..+...+
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555677888878888888888887777665 4555555555555444
No 135
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=65.25 E-value=38 Score=24.84 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
++.|+..+..|..+-..|..++..|..+...+..+...+......|..+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 3556667777777777777777777777777777766666666666444
No 136
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.07 E-value=44 Score=25.56 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKE---MMEALENETAAKEA-------EFQALMEEKEALGLAY 204 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~---~L~~L~~q~~~~~a-------~~e~L~~Ei~rL~~~~ 204 (211)
.+.++..|..+-..++. ++.-|++|+.|-.. =-|.+..|+++|...+
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 33333333444433443 45555555544332 2244555565554433
No 137
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=65.04 E-value=41 Score=25.10 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 048456 116 LLANRVSAQRSRLRNLAYMEKLKKEIDNEE---ARLSVLLPLVSHYETECKV 164 (211)
Q Consensus 116 ~l~NReSAqrSR~RKk~yieeLE~kv~~L~---~en~~L~~~l~~L~~~~~~ 164 (211)
+..|-.+|-.+=..|+..|.+|-..+..+. ..+.-|..++..+...+..
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666667777777777666655 4555555555555555433
No 138
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=64.96 E-value=38 Score=24.73 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKE 174 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~ 174 (211)
.||..|..++..++.+...|..+|..|+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888887777777788877765
No 139
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=64.55 E-value=4.2 Score=31.30 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVS 156 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~ 156 (211)
+++|..+++.|+.||..|+.+|.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777777777777777777664
No 140
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.41 E-value=49 Score=29.48 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
+.+.....|+.+..++...+..++.+
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444444444444444444433
No 141
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.18 E-value=7.6 Score=26.02 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.|++.+...+..|..+|..|..++..|+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555554443
No 142
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.65 E-value=12 Score=22.89 Aligned_cols=16 Identities=6% Similarity=-0.263 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 048456 190 FQALMEEKEALGLAYR 205 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~~~ 205 (211)
+..|..||.||+.++|
T Consensus 16 ~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3445566666665544
No 143
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=63.62 E-value=12 Score=23.06 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 157 HYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 157 ~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
..+++...|...|..|.+++-.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHh
Confidence 3333333444455555554433
No 144
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=62.53 E-value=40 Score=24.20 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPL 154 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~ 154 (211)
||.+...|..+.+.|..+
T Consensus 40 le~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 40 LEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 145
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.68 E-value=51 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
..|+.++..+...+..|...+..++.
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44555555555555555555544443
No 146
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=61.67 E-value=4.5 Score=27.22 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLL 152 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~ 152 (211)
..|++.||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999998877665543
No 147
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.58 E-value=53 Score=24.97 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 156 SHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 156 ~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..++.....|..+-..++..+...
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443
No 148
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=59.61 E-value=8.8 Score=29.27 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 163 KVLGKMNREMKEMMEALENETA 184 (211)
Q Consensus 163 ~~L~~EN~~Lk~~L~~L~~q~~ 184 (211)
..|..+|..|..+++.|+.++.
T Consensus 94 ~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 94 KKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888877777653
No 149
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.59 E-value=97 Score=27.66 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
++.+-..+.......+.+...+..||..|+..+..+..+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 333333344445555555555666666666666655444
No 150
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.12 E-value=37 Score=22.61 Aligned_cols=23 Identities=4% Similarity=0.036 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSH 157 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~ 157 (211)
.+|..+|+.|..+...|...+..
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333
No 151
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.71 E-value=69 Score=25.66 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 048456 192 ALMEEKEAL 200 (211)
Q Consensus 192 ~L~~Ei~rL 200 (211)
.|.++|++|
T Consensus 102 kLEk~id~l 110 (155)
T 2efr_A 102 KLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 152
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=58.51 E-value=26 Score=24.85 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 048456 166 GKMNREMKEMME 177 (211)
Q Consensus 166 ~~EN~~Lk~~L~ 177 (211)
..+|..|+.+|.
T Consensus 67 ~~e~~~L~~~L~ 78 (80)
T 1nlw_A 67 QREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 355555555544
No 153
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=58.46 E-value=20 Score=22.07 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 048456 190 FQALMEEKEALGLAYR 205 (211)
Q Consensus 190 ~e~L~~Ei~rL~~~~~ 205 (211)
+..|..||.||+..+|
T Consensus 17 ~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 17 LYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3446666666666655
No 154
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.11 E-value=22 Score=20.98 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L 158 (211)
+.||.++..|+...+.|...+..|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777766666666665554
No 155
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=57.87 E-value=44 Score=23.76 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVLLPLVSH 157 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L~~~l~~ 157 (211)
-++.|+.++..|+.+...|..+++.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3688999999999999888888864
No 156
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=57.41 E-value=5.4 Score=34.07 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|..+.+.|+.||..|..++.. +..|..||..|+.-|
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESE----VADLKKENKDLKESL 59 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 333444444444444444333 335566777777654
No 157
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.22 E-value=18 Score=33.21 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
+...+..|..++..|++++.-|..++..|+.++..+..+ ...+++|+++|+
T Consensus 40 l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~ 90 (428)
T 4b4t_K 40 LSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQ 90 (428)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHc
Confidence 344444455555555555555555555555555444332 234566666554
No 158
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.67 E-value=75 Score=25.45 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------------HHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET-AA-------------KEAEFQALMEEK 197 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-~~-------------~~a~~e~L~~Ei 197 (211)
+-.+.+|.++..|.........+.....+....|..+...|...|..-.... .+ -.+-+-.|..||
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3344555556666555555555555555555555555555544443321111 11 124556677788
Q ss_pred HHHH
Q 048456 198 EALG 201 (211)
Q Consensus 198 ~rL~ 201 (211)
.+|+
T Consensus 150 ~~~~ 153 (155)
T 2efr_A 150 ARLK 153 (155)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7775
No 159
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.63 E-value=62 Score=30.52 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 048456 191 QALMEEKEALGLAY 204 (211)
Q Consensus 191 e~L~~Ei~rL~~~~ 204 (211)
+.+..+|+||+...
T Consensus 142 ~~q~skIQRLE~dI 155 (491)
T 1m1j_A 142 QEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555554443
No 160
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=56.39 E-value=35 Score=23.21 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048456 161 ECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRL 206 (211)
Q Consensus 161 ~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~ 206 (211)
+...|..-|-.|-.+++.|+.++. .-..||+||..++.+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~-------e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCS-------EKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 344455666677777777766653 344677778777644
No 161
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=56.37 E-value=61 Score=27.56 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=39.7
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 108 KGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVL 165 (211)
Q Consensus 108 ~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L 165 (211)
.+...+|+-++.|..+-++ -+..|+.+++..+.|++.+.++++...++..++
T Consensus 160 asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899998888887764 346788888888888888888888776655433
No 162
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.84 E-value=1.3e+02 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 048456 188 AEFQALMEEKEALGLAYR 205 (211)
Q Consensus 188 a~~e~L~~Ei~rL~~~~~ 205 (211)
.+.+.|...|+.|.....
T Consensus 175 ~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777765543
No 163
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.77 E-value=51 Score=23.39 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 176 MEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 176 L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
+..++.+..-++.....|+.|++.+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444444
No 164
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=55.66 E-value=18 Score=21.34 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 163 KVLGKMNREMKEMMEAL 179 (211)
Q Consensus 163 ~~L~~EN~~Lk~~L~~L 179 (211)
..|.+||++|+..++.|
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666665544
No 165
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.32 E-value=71 Score=24.47 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEEARLSVL 151 (211)
Q Consensus 133 yieeLE~kv~~L~~en~~L 151 (211)
-|+.|-..|..|..++..+
T Consensus 16 ~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444
No 166
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=54.06 E-value=40 Score=30.70 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 147 RLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 147 en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
|...|..++..+++....|..++..+...+..+.++..-.+.....|..+|+.|
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555554433333344444444444
No 167
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=52.29 E-value=83 Score=26.72 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEE 196 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~E 196 (211)
|......+++++..|++....+.+|++.+..+|....++..-.+...+.+--|
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 33444455566666666666667888888888888877753333333333333
No 168
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=51.64 E-value=1.2e+02 Score=26.18 Aligned_cols=59 Identities=8% Similarity=0.131 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEA 199 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~r 199 (211)
++-|+.+-.-...|+.++-.+|+.|. .--+.+-++|..|+++....+.....++..++-
T Consensus 165 LelL~IRK~ma~sEI~EID~KI~~L~-------~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 165 LEFLNIQKNSTLSEIRDIEVEVENLR-------QKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666655554 555566777777777776666655555555543
No 169
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.28 E-value=77 Score=23.95 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEI-DNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 132 ~yieeLE~kv-~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
.|.+.|+..- +.|=.+.-.|..+++.++.++..|.......-.++..|+.+.
T Consensus 22 ~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~ev 74 (104)
T 3s9g_A 22 YHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELEL 74 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Confidence 3445555442 335455556666666665444444444444434444444433
No 170
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.22 E-value=14 Score=25.91 Aligned_cols=13 Identities=8% Similarity=0.501 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 048456 133 YMEKLKKEIDNEE 145 (211)
Q Consensus 133 yieeLE~kv~~L~ 145 (211)
||..|+.+++.|+
T Consensus 58 YI~~L~~~~~~L~ 70 (80)
T 1hlo_A 58 YIQYMRRKNHTHQ 70 (80)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444433333333
No 171
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=50.82 E-value=49 Score=25.54 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARL----SVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en----~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.|+.+.+..+..+.... .++..++..|..+...|..+...|+.++...
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544443322 3556666666655555555555555554443
No 172
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.63 E-value=23 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.||..+..|+.-..+|..++..|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777766664
No 173
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=50.37 E-value=56 Score=29.05 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPL 154 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~ 154 (211)
||..|...+.+...|...
T Consensus 17 ~e~~i~~~~~~i~~L~~~ 34 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEM 34 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHH
Confidence 333333333333333333
No 174
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.21 E-value=69 Score=23.09 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..|+.++..++.+...|..++..++
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~ 97 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLN 97 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 175
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=50.18 E-value=54 Score=28.29 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=57.1
Q ss_pred CCCCCCChHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 103 SNDHGKGPKRMKRLLANRVSAQRSR-LRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 103 ~~~~~~d~KR~KR~l~NReSAqrSR-~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+.......|+.+.-+-++--=--=| .=-..-|.++..+++.|...-..+..+|+.|++.=..|..+...++.++..++.
T Consensus 147 ~SYSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 147 SSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp GSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666665443332221111 112346889999999999999999999999999999999999999998877754
Q ss_pred H
Q 048456 182 E 182 (211)
Q Consensus 182 q 182 (211)
.
T Consensus 227 y 227 (242)
T 3uux_B 227 Y 227 (242)
T ss_dssp C
T ss_pred h
Confidence 3
No 176
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=50.08 E-value=40 Score=24.74 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 138 KKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 138 E~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
|.++..|+.+|..|..++..++..+ ..+-..+...+..++.+..--.+.-+..-.|-+.|
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~---~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLL---AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.04 E-value=68 Score=22.97 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..+..++.++..+.............|...+..|..+...|..++...
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ea 61 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQL 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555554444455555555555555555555443333
No 178
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.72 E-value=31 Score=25.96 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 048456 193 LMEEKEALGLA 203 (211)
Q Consensus 193 L~~Ei~rL~~~ 203 (211)
.+++++.|+.-
T Consensus 73 ~~~~~e~Lq~E 83 (100)
T 1go4_E 73 LREDHSQLQAE 83 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 179
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.57 E-value=1.7e+02 Score=27.37 Aligned_cols=15 Identities=13% Similarity=-0.170 Sum_probs=8.1
Q ss_pred CCCChHHHHHHHHhhHHH
Q 048456 106 HGKGPKRMKRLLANRVSA 123 (211)
Q Consensus 106 ~~~d~KR~KR~l~NReSA 123 (211)
+..|.|-+| .|-+..
T Consensus 39 pmlD~~~ir---~n~~~v 53 (501)
T 1wle_A 39 PLLDMESLC---AYPEDA 53 (501)
T ss_dssp CCCCHHHHH---HSHHHH
T ss_pred CccCHHHHH---hCHHHH
Confidence 455666554 355553
No 180
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=49.35 E-value=9.7 Score=29.28 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 156 SHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 156 ~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
+.|..+.+.|..||+.||.+|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555567999999999974
No 181
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.98 E-value=1.9e+02 Score=27.78 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 188 AEFQALMEEKEALGLAY 204 (211)
Q Consensus 188 a~~e~L~~Ei~rL~~~~ 204 (211)
...+.+..+|+||.+..
T Consensus 138 snLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455677777777655
No 182
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=48.89 E-value=74 Score=23.11 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 121 VSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 121 eSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
+.|..--..-..-+..+|.+...+..+...|..++..++.++..+...-......|..-+....--++....|...|+-|
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555666666666666666666666666555555555555555555444444455555555555433
No 183
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.21 E-value=26 Score=27.75 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+..|...+.....+...|..++..-.........++..+...|..|..
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555444555555666667776666643
No 184
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=47.97 E-value=6.6 Score=31.58 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 158 YETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
+...+..+..+...|...++.|+.+.+|.++.-.-|..+++..+.+..++
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666777777777777788777777777777666655443
No 185
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.90 E-value=17 Score=24.19 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+...+..|..||..|+.++..++.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566667778888877776654
No 186
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=47.65 E-value=1.2e+02 Score=25.19 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL-ENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L-~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
++.+..|..++..|+.+...|.+++..+-..... .|+..+..-+.-| +++..|++- ...|-.|.+...
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~--~E~~L~~KF~~lLNeKK~KIR~l-q~~Ll~~~~~~~ 206 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEA--LETDLYKRFILVLNEKKTKIRSL-HNKLLNAAQERE 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHhh
Confidence 3334444555555555555555555554433322 3444455555555 333444442 223444444443
No 187
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=47.52 E-value=60 Score=21.62 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM 175 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~ 175 (211)
++...+..|+.+...++..++...++|+.|.+-.-.|...
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~E 43 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIE 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445555555555555666555555555555444344333
No 188
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.08 E-value=1.6e+02 Score=26.29 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 048456 189 EFQALMEEKEALGLA 203 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~ 203 (211)
.++.+++|++.+...
T Consensus 450 ~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 450 ENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhhh
Confidence 455555555554433
No 189
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.08 E-value=79 Score=23.02 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048456 165 LGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYR 205 (211)
Q Consensus 165 L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~ 205 (211)
...||..|..++..+..+. ..|++|.+.|+.++.
T Consensus 44 aL~EN~~Lh~~ie~l~eEi-------~~lk~en~eL~elae 77 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEI-------ARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3467888888877766543 445555555555443
No 190
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.01 E-value=53 Score=30.19 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
-+|.++||.++..|+..+..-...|..|+..
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566677777776666555544455555533
No 191
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.69 E-value=59 Score=21.44 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
.||.-|..|+..|+.|...++.|+..
T Consensus 21 klenivarlendnanlekdianlekd 46 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34555555555555555555444433
No 192
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=46.17 E-value=33 Score=21.43 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 160 TECKVLGKMNREMKEMM 176 (211)
Q Consensus 160 ~~~~~L~~EN~~Lk~~L 176 (211)
.....|..+|+.|..++
T Consensus 20 dkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334445555555544
No 193
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.12 E-value=94 Score=23.47 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 107 GKGPKRMKRLLANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 107 ~~d~KR~KR~l~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
..++|-.|=|++| ||---+| ..|--+|..|.-...++...++.+++++.....+...++.....
T Consensus 6 EvEEKyrKAMVsn---AQLDNEK-----sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~ 69 (103)
T 4h22_A 6 EVEEKYKKAMVSN---AQLDNEK-----TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSI 69 (103)
T ss_dssp --CCTHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667665 3332222 12333444444444444444444444444444444333333333
No 194
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=45.90 E-value=52 Score=27.72 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
++.||...-..-.+-+ .|+..+..+.+||..|+..+..|+...
T Consensus 32 ~~~~~a~~~s~~s~~~-------dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYN-------DLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 4445555544444444 444445556799999999999997653
No 195
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.84 E-value=1e+02 Score=23.87 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET--------AAKEAEFQALMEEKEAL 200 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~--------~~~~a~~e~L~~Ei~rL 200 (211)
|......|..+...+......|+..+..|...|..|..++..+..+. .-+..++..|....+++
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~ 105 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEAL 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433333333333334444444555555555555554444332 22334455555555544
No 196
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=44.89 E-value=57 Score=23.20 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEA 188 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a 188 (211)
-|+.+..--..|+.++-.+++.|. .--+.+-.+|..++++..+.+.
T Consensus 11 ml~IrKnma~sEI~EID~Ki~nL~-------~mR~ivldRlA~lEqdE~~LE~ 56 (72)
T 2xu6_A 11 FLNIQKNSTMSEIRDIEVEVENLR-------QKKEKLLGKIANIEQNQLMLED 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444445555555544443 3333444556666665544443
No 197
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.77 E-value=84 Score=22.55 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEAL 200 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL 200 (211)
|...+....+++..|.+-...|..--+.|...+..|+++..--+.-.+.|+.-.+.|
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777888888888888888776644444444444433333
No 198
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=44.44 E-value=88 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLVSHYETECKVLGK 167 (211)
Q Consensus 144 L~~en~~L~~~l~~L~~~~~~L~~ 167 (211)
|-...+.+..+|-.|++++..|.+
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~ 37 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLA 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433333333
No 199
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=44.40 E-value=1.2e+02 Score=25.58 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
+.=.|.++..|+.+|..|+.++..|. ....+|..+-.++..+....
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDL 112 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888888887775 33577888887777776554
No 200
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.14 E-value=46 Score=21.95 Aligned_cols=15 Identities=47% Similarity=0.383 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 048456 165 LGKMNREMKEMMEAL 179 (211)
Q Consensus 165 L~~EN~~Lk~~L~~L 179 (211)
|..||..|+.++..|
T Consensus 24 Lk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 24 LRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 201
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.80 E-value=1e+02 Score=23.26 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREM 172 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~L 172 (211)
..|..|..|+.++.+|..++.....-...+..+|+.|
T Consensus 15 ~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3444566666666666666655544444444444433
No 202
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.78 E-value=67 Score=20.83 Aligned_cols=42 Identities=5% Similarity=0.045 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
|+..+..+......+...+..+...+..+...-...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444433333333333333333333
No 203
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.42 E-value=97 Score=22.58 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 129 RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
+=.+-+.+||..-..+..++..+..+...|..+-...-.+-+.++.++-.+..+..--+..+......+++|+
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555555555554444444443333344444555555555444444444444444444443
No 204
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.18 E-value=1.8e+02 Score=27.18 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=6.7
Q ss_pred ChHHHHHHHHhh
Q 048456 109 GPKRMKRLLANR 120 (211)
Q Consensus 109 d~KR~KR~l~NR 120 (211)
++..++.-+++|
T Consensus 14 n~~~v~~~~~~R 25 (485)
T 3qne_A 14 DPEIIKASQKKR 25 (485)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 455555555555
No 205
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.17 E-value=76 Score=24.05 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 048456 169 NREMKEMMEAL 179 (211)
Q Consensus 169 N~~Lk~~L~~L 179 (211)
...|+..+..|
T Consensus 27 i~eLk~~ve~l 37 (106)
T 4e61_A 27 IEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 206
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.27 E-value=1.2e+02 Score=23.13 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 153 PLVSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 153 ~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
..++.|+.+...|...|..|+..+-.|++..
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777778888888888888888887765
No 207
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.95 E-value=73 Score=20.72 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 048456 148 LSVLLPLVSHYE 159 (211)
Q Consensus 148 n~~L~~~l~~L~ 159 (211)
|+-|...++.|.
T Consensus 5 naylrkkiarlk 16 (52)
T 3he5_B 5 NAYLRKKIARLK 16 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 334444444443
No 208
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=40.81 E-value=43 Score=29.35 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 143 NEEARLSVLLPLVSHY 158 (211)
Q Consensus 143 ~L~~en~~L~~~l~~L 158 (211)
.|+.++..|..+++.|
T Consensus 189 ~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 189 SLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 209
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.49 E-value=96 Score=27.54 Aligned_cols=21 Identities=5% Similarity=-0.277 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~ 162 (211)
..|+........++..|+...
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l 35 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMW 35 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHH
Confidence 333333333333444443333
No 210
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.26 E-value=78 Score=20.86 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHYETECKVLGKMNREMKEMMEA 178 (211)
Q Consensus 146 ~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~ 178 (211)
.||+.|..-++.|+..+..|......|...+..
T Consensus 17 kenaklenivarlendnanlekdianlekdian 49 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIAN 49 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 356666666666654333333333333333333
No 211
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.22 E-value=36 Score=19.67 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 048456 146 ARLSVLLPLVSHY 158 (211)
Q Consensus 146 ~en~~L~~~l~~L 158 (211)
..|+.|..+++.|
T Consensus 7 qknarlkqeiaal 19 (28)
T 3ra3_B 7 QKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHH
Confidence 3333333333333
No 212
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=40.21 E-value=83 Score=25.51 Aligned_cols=11 Identities=9% Similarity=0.151 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 048456 166 GKMNREMKEMM 176 (211)
Q Consensus 166 ~~EN~~Lk~~L 176 (211)
..|...|+.++
T Consensus 119 ~~Ei~~Lr~qL 129 (175)
T 3lay_A 119 AKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 213
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.53 E-value=1.2e+02 Score=22.63 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.|+..+..|+.....+..++..+.
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 214
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.38 E-value=2.3e+02 Score=25.94 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLP 153 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~ 153 (211)
..|+++-.+|..+..+...|..
T Consensus 41 ~~LE~~l~elsn~ts~v~~Lvk 62 (409)
T 1m1j_C 41 LEIEGLLQQATNSTGSIEYLIQ 62 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 215
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.96 E-value=97 Score=21.59 Aligned_cols=14 Identities=0% Similarity=0.003 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 048456 166 GKMNREMKEMMEAL 179 (211)
Q Consensus 166 ~~EN~~Lk~~L~~L 179 (211)
..+...|..+++.+
T Consensus 40 E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 40 EDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 216
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.71 E-value=91 Score=22.10 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+..|+.+...+..+...|..++..++
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~ 92 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVM 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.44 E-value=48 Score=30.25 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.+|..+++.|+.+...|..+...++.+...+..+...++.++..+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544444444444444444444444444444444433
No 218
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.55 E-value=88 Score=20.70 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 139 KEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 139 ~kv~~L~~en~~L~~~l~~L~~ 160 (211)
.++.+|..+...|..+|..|..
T Consensus 4 aki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565555555555555543
No 219
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.47 E-value=1.1e+02 Score=21.81 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 149 SVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 149 ~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
..|+.+|..+..+...|..|...++.-+..+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455566655555555555444444444433
No 220
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=37.17 E-value=35 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 048456 189 EFQALMEEKEALG 201 (211)
Q Consensus 189 ~~e~L~~Ei~rL~ 201 (211)
.+..|+.||-||.
T Consensus 51 q~~lLK~EIRRlE 63 (71)
T 3bbp_D 51 QIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555553
No 221
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=37.15 E-value=1.5e+02 Score=26.08 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 131 LAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 131 k~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
+.++..|-..+...+.....+...|..+.. .|......|+.....+.....-..+..+.|++||+.++...
T Consensus 122 ~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~---~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I 192 (346)
T 2nrj_A 122 KEGITDLRGEIQQNQKYAQQLIEELTKLRD---SIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSV 192 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 344455555555555555444444444432 22333334444444444443333345577888888876543
No 222
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=36.17 E-value=1.1e+02 Score=25.84 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 155 VSHYETECKVLGKMNREMKEMMEALENET 183 (211)
Q Consensus 155 l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~ 183 (211)
|+..+.+...|..+|..|+.+|..|-..+
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~~A 95 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMDVA 95 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555554443
No 223
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.05 E-value=1.4e+02 Score=27.48 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 048456 191 QALMEEKE 198 (211)
Q Consensus 191 e~L~~Ei~ 198 (211)
..+.++++
T Consensus 93 ~~~~~~~~ 100 (455)
T 2dq0_A 93 EELKKKID 100 (455)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 224
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.94 E-value=1.5e+02 Score=22.93 Aligned_cols=7 Identities=43% Similarity=0.378 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 048456 195 EEKEALG 201 (211)
Q Consensus 195 ~Ei~rL~ 201 (211)
+||++|+
T Consensus 92 ae~erlr 98 (121)
T 3mq7_A 92 AEVERLR 98 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 225
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.04 E-value=2.8e+02 Score=25.81 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~ 159 (211)
|..++..|+.+.+.++.+|..+.
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566666665543
No 226
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.93 E-value=96 Score=20.04 Aligned_cols=47 Identities=6% Similarity=-0.057 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
...++.+++.++..+..+...+...+..+...+.....+-..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555554443
No 227
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.75 E-value=1.4e+02 Score=22.07 Aligned_cols=11 Identities=45% Similarity=0.585 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 048456 191 QALMEEKEALG 201 (211)
Q Consensus 191 e~L~~Ei~rL~ 201 (211)
|.+..|.+.|.
T Consensus 64 Ekl~~eKe~L~ 74 (94)
T 3jsv_C 64 EKLVEKKEYLQ 74 (94)
T ss_dssp HHHHHTTSHHH
T ss_pred HHHHhHHHHHH
Confidence 44444554443
No 228
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=33.62 E-value=2.7e+02 Score=25.12 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
+-+|..+-..++.+...|.++...+.
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 229
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.18 E-value=1.1e+02 Score=20.45 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
|-++...|..||..|+..|+.=..
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHH
Confidence 344455556888888887665444
No 230
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=33.06 E-value=1.3e+02 Score=21.24 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKM 168 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~E 168 (211)
|...|..|..|+.+|..++..+++++..+..+
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888887777665533
No 231
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=32.58 E-value=1.5e+02 Score=22.27 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM-MEALENETAAKEAEFQALMEEK 197 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~-L~~L~~q~~~~~a~~e~L~~Ei 197 (211)
+..++.+...++.-.-.|+.|+..|+ .+-++.++.+ +-.+.--..+-++-...|..|+
T Consensus 6 v~~~~~~~~k~E~~Ll~Ls~Qi~~LE------ktKsKe~K~~IlrEi~~~~~~i~Ga~~~lerEl 64 (103)
T 3mq1_A 6 MERIHEQIKKGELALFYLQEQINHFE------EKPTKEMKDKIVAEMDTIIAMIDGVRGVLDRLM 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777776 3445556555 2333333333333333333333
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.30 E-value=39 Score=31.01 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 048456 193 LMEEKEAL 200 (211)
Q Consensus 193 L~~Ei~rL 200 (211)
++++|..+
T Consensus 65 ~~~~i~~~ 72 (434)
T 4b4t_M 65 NKEKIKNN 72 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 34444433
No 233
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=32.17 E-value=86 Score=18.99 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 150 VLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 150 ~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
.|.+.++.|..++..|+-.-..|+..+..|
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555666555443
No 234
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=32.04 E-value=1.8e+02 Score=22.50 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEM-MEALENETAAKEAEFQALMEE 196 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~-L~~L~~q~~~~~a~~e~L~~E 196 (211)
+..++.+...++.-.-.|+.|+..|+ .+-++.++.+ |-.+.--..+-++-...|..|
T Consensus 21 v~~~~~~~~k~E~~Ll~Ls~Qi~~LE------~tKsKe~K~~IlrEi~~~~~~i~Ga~~~lerE 78 (119)
T 2jmh_A 21 IEQANHAIEKGEHQLLYLQHQLDELN------ENKSKELQEKIIRELDVVCAMIEGAQGALERE 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666677777776 3445555555 233333333333333333333
No 235
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=31.74 E-value=1.7e+02 Score=23.43 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=17.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 118 ANRVSAQRSRLRNLAYMEKLKKEIDNE 144 (211)
Q Consensus 118 ~NReSAqrSR~RKk~yieeLE~kv~~L 144 (211)
.-|.-.+.+-.+|++|+.+|..+...+
T Consensus 12 ~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 12 VERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455567888888888876665
No 236
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.05 E-value=1.5e+02 Score=21.43 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 119 NRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 119 NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
|=+||-.+--+-|+-|.+ ++......|-.+..++......+..|..|-..|+.+|
T Consensus 14 eLQSALeaEIqAKQ~i~E---ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSR---EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557776666665554432 2233334444444444444433333333333333333
No 237
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.04 E-value=1.7e+02 Score=22.04 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 048456 193 LMEEKEALG 201 (211)
Q Consensus 193 L~~Ei~rL~ 201 (211)
|..++..|+
T Consensus 70 L~~~~~~lk 78 (103)
T 4h22_A 70 LQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444443333
No 238
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.92 E-value=20 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVL 151 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L 151 (211)
+..|++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5578999999999887655544
No 239
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.80 E-value=2.1e+02 Score=22.91 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 171 EMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 171 ~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
.+..+...|+.+..=++.+.+.+..++..|+..+..+
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555556678888999999998766443
No 240
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.67 E-value=1.5e+02 Score=21.39 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 189 EFQALMEEKEALGLAY 204 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~ 204 (211)
.|..|..|+++|+.-+
T Consensus 53 rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 53 RNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555554433
No 241
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.51 E-value=81 Score=18.15 Aligned_cols=11 Identities=9% Similarity=0.012 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 048456 147 RLSVLLPLVSH 157 (211)
Q Consensus 147 en~~L~~~l~~ 157 (211)
||..|...++.
T Consensus 8 endaleqkiaa 18 (28)
T 3ra3_A 8 ENDALEQKIAA 18 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 33333333333
No 242
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.36 E-value=1.3e+02 Score=20.42 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 166 GKMNREMKEMMEALEN 181 (211)
Q Consensus 166 ~~EN~~Lk~~L~~L~~ 181 (211)
..|..+|+..++.|+.
T Consensus 55 k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 55 KQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555444443
No 243
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=30.11 E-value=56 Score=23.16 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALEN 181 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~ 181 (211)
+|..++..++..+..|..=+..-+..+..|...|+.||..+-.++.
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444445555555555555556667777777777766654
No 244
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.01 E-value=3.2e+02 Score=24.93 Aligned_cols=8 Identities=13% Similarity=0.057 Sum_probs=3.3
Q ss_pred hhHHHHHH
Q 048456 119 NRVSAQRS 126 (211)
Q Consensus 119 NReSAqrS 126 (211)
|-+..+.+
T Consensus 10 n~~~~~~~ 17 (455)
T 2dq0_A 10 NPELVKND 17 (455)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 44444433
No 245
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.89 E-value=3.1e+02 Score=25.52 Aligned_cols=16 Identities=6% Similarity=0.028 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 048456 165 LGKMNREMKEMMEALE 180 (211)
Q Consensus 165 L~~EN~~Lk~~L~~L~ 180 (211)
|..+-+.|+.++..++
T Consensus 76 l~~~~~~l~~~i~~le 91 (485)
T 3qne_A 76 LIAEKEKLSNEKKEII 91 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 246
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=29.55 E-value=2.6e+02 Score=23.78 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 048456 120 RVSAQRSRLRNLAYMEKLKKEIDNEEARL-SVLLPLVSHYETECKVLGKMNREMKEMMEALENET-AAKEAEFQALMEEK 197 (211)
Q Consensus 120 ReSAqrSR~RKk~yieeLE~kv~~L~~en-~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~-~~~~a~~e~L~~Ei 197 (211)
...|...+.+=..++++|-.++.-.-.+. ..|...+..++. .|..-+..++++++.+.+.. -.-+.++..|...+
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~---~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~ 240 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQM 240 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 45566677777777777777665442222 112222333333 33444578888888887764 34456788888888
Q ss_pred HHHHHHHhh
Q 048456 198 EALGLAYRL 206 (211)
Q Consensus 198 ~rL~~~~~~ 206 (211)
+.|+..++.
T Consensus 241 e~l~~~l~~ 249 (273)
T 3s84_A 241 EQLRQKLGP 249 (273)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhCc
Confidence 888887754
No 247
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=29.30 E-value=19 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
..||.++..|+..++....+++.|+
T Consensus 3 aaleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666655555555554
No 248
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=28.94 E-value=88 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
..||.++..+......+..++..++
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~ 27 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMD 27 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555554444444443
No 249
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.33 E-value=1.6e+02 Score=20.90 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~ 159 (211)
||..+..+..|...+...++.++
T Consensus 13 ~eT~iaa~~~ev~t~~~~l~~~e 35 (74)
T 1avy_A 13 IETDIASVRQEVNTAKGNISSLQ 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhheeeccccchhhhhh
Confidence 34444444444444444444443
No 250
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=28.15 E-value=1.4e+02 Score=20.11 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
|-..+.+||.++..++.-.+.+...+..+
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~ 32 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEAS 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34567778888888776666544444443
No 251
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.07 E-value=1.7e+02 Score=21.20 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=17.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 118 ANRVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 118 ~NReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
.-|++|+....=++.-.+.|..--..|..+......+|..|
T Consensus 23 gKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~l 63 (84)
T 1gmj_A 23 GKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERL 63 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577776654344333444433333333333333333333
No 252
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.69 E-value=2.7e+02 Score=23.39 Aligned_cols=15 Identities=0% Similarity=-0.040 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 048456 145 EARLSVLLPLVSHYE 159 (211)
Q Consensus 145 ~~en~~L~~~l~~L~ 159 (211)
..++..|..+++.|.
T Consensus 121 h~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 121 HKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 253
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.51 E-value=1.6e+02 Score=20.76 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 048456 165 LGKMNREMKEMM 176 (211)
Q Consensus 165 L~~EN~~Lk~~L 176 (211)
+..+-..++..+
T Consensus 40 lE~el~~~r~e~ 51 (86)
T 1x8y_A 40 KEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
No 254
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.40 E-value=62 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLP 153 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~ 153 (211)
.|+..||.++..|+.....|..
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 5889999999998877766543
No 255
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=27.24 E-value=1.6e+02 Score=20.56 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048456 147 RLSVLLPLVSHYETECKVLGK 167 (211)
Q Consensus 147 en~~L~~~l~~L~~~~~~L~~ 167 (211)
+...+...++...++|+.|.+
T Consensus 20 eL~~~r~e~~~ql~EYq~Lln 40 (74)
T 2xv5_A 20 EMAEMRARMQQQLDEYQELLD 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333343333334444433
No 256
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.03 E-value=1.1e+02 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
|..-|.+||..+..-..++.+|+.++..++
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888777777777766654
No 257
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.67 E-value=1.7e+02 Score=20.67 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMK 173 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk 173 (211)
+..+...+..|+.+...++..++...++|+.|..=.-.|.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le 69 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444555555555555555555555554444333333
No 258
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.46 E-value=1.4e+02 Score=25.41 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
|-.+|..++...+.|..++..+.+..+.....-..+...|..|
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444444444444444444444
No 259
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.05 E-value=1.7e+02 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNR 170 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~ 170 (211)
.-|..||..+..+..+.......-..|..-...|..|..
T Consensus 12 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 12 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333333333333333333
No 260
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=25.32 E-value=30 Score=29.51 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 120 RVSAQRSRLRNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGK 167 (211)
Q Consensus 120 ReSAqrSR~RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~ 167 (211)
|+...--=.......+++..++++|+.+|.++..++..|+++..+..+
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~t 183 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTT 183 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333333334455556677777777777777777777777655544443
No 261
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.14 E-value=4.4e+02 Score=24.85 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKE 187 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~ 187 (211)
=-+|.++||.++..|+..+..-...|..|+ .--..++..|+.||....++.
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq-------~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKALQ-------NSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777766655544445555544 444555666666666654444
No 262
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=25.05 E-value=2.1e+02 Score=21.21 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 124 QRSRLRNLAYMEKLKKEIDNEE 145 (211)
Q Consensus 124 qrSR~RKk~yieeLE~kv~~L~ 145 (211)
+.+..=.-....+|+.+|..++
T Consensus 21 ~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 21 RQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555555543
No 263
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.91 E-value=2.2e+02 Score=21.30 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 142 DNEEARLSVLLPLVSHYETECKVLGK 167 (211)
Q Consensus 142 ~~L~~en~~L~~~l~~L~~~~~~L~~ 167 (211)
..|+..+.+|+.+|..|..+.-.|..
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~ 70 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQE 70 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44666666677777766655544444
No 264
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.81 E-value=2e+02 Score=20.90 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 141 IDNEEARLSVLLPLVSHYETECKVLGKMN----REMKEMMEALENETAAKEAEFQALMEEKEALGLAY 204 (211)
Q Consensus 141 v~~L~~en~~L~~~l~~L~~~~~~L~~EN----~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~ 204 (211)
|..++.....++.+|..+++....+.... +.|..-|..+-.-=+-..+....|..+|+.++..+
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Y 81 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQY 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555444433211 12222222221111223345566777777777665
No 265
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.76 E-value=2.6e+02 Score=22.20 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
-+||..++.--+-...|...|..|.
T Consensus 101 rELEADLKEKDsMVe~LT~TiG~Lr 125 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTETIGILR 125 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHH
Confidence 4666666666566666666666665
No 266
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=24.67 E-value=1.2e+02 Score=18.07 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048456 166 GKMNREMKEMMEALENE 182 (211)
Q Consensus 166 ~~EN~~Lk~~L~~L~~q 182 (211)
.+.|-.-++.++.|..+
T Consensus 14 karnyaakqkvqalrhk 30 (33)
T 1fmh_B 14 KARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 35555555555555543
No 267
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.37 E-value=1.1e+02 Score=26.59 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 160 TECKVLGKMNREMKEMMEALENE 182 (211)
Q Consensus 160 ~~~~~L~~EN~~Lk~~L~~L~~q 182 (211)
++..+|..+|+.|..+++.|+++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 268
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.08 E-value=1.4e+02 Score=22.88 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L 158 (211)
.|+..+..|+.....+..++..+
T Consensus 109 ~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 269
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.06 E-value=3.1e+02 Score=22.80 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPL 154 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~ 154 (211)
.|+.++..|+.++.+|..+
T Consensus 63 ~l~~~l~~l~~e~~el~d~ 81 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHR 81 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 270
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.58 E-value=35 Score=32.34 Aligned_cols=24 Identities=0% Similarity=0.018 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L 158 (211)
.+||.++.+++.+.......+...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~ 361 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEA 361 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666665555444444433
No 271
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.53 E-value=1.2e+02 Score=23.16 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETEC 162 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~~ 162 (211)
++|..+|..|..++.+|..++..|..+.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777776666554
No 272
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=23.48 E-value=2e+02 Score=20.25 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLG 166 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~ 166 (211)
+|...|..|..|+.+|..++..+++++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888888877766655
No 273
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.41 E-value=64 Score=22.42 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVL 151 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L 151 (211)
.|+..||.++..|+.....+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 48889999998887655443
No 274
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.18 E-value=2.1e+02 Score=25.83 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048456 137 LKKEIDNEEARLSVLLPLVS 156 (211)
Q Consensus 137 LE~kv~~L~~en~~L~~~l~ 156 (211)
+..++..|+.+.+.++.+|.
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544
No 275
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.05 E-value=2.4e+02 Score=21.15 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048456 129 RNLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKMNREMKEMMEALENETAAKEAEFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 129 RKk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~EN~~Lk~~L~~L~~q~~~~~a~~e~L~~Ei~rL~~~~~~~ 207 (211)
|.-..+..++.++..|.............|...+..|..+-..|..+|+.-.....-.+-..+.|...-..|...+..+
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 276
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.01 E-value=2.6e+02 Score=25.26 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 048456 168 MNREMKEMMEALE 180 (211)
Q Consensus 168 EN~~Lk~~L~~L~ 180 (211)
+-+.|+.++..++
T Consensus 76 ~~~~~~~~~~~~~ 88 (425)
T 2dq3_A 76 RVKELKEEIDRLE 88 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 277
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.86 E-value=2.1e+02 Score=23.51 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 132 AYMEKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 132 ~yieeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
.++.-+=..+..|+.+|..|..+...|+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~ 172 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLL 172 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544444444443
No 278
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.76 E-value=2e+02 Score=20.16 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 150 VLLPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 150 ~L~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
+|...|..+..++..|......+.+.+
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~ 29 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEY 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333
No 279
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.63 E-value=2.3e+02 Score=20.74 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 048456 189 EFQALMEEKEALGLAYRLL 207 (211)
Q Consensus 189 ~~e~L~~Ei~rL~~~~~~~ 207 (211)
..+.|+.|+..+...+..+
T Consensus 70 kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 70 NIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666665555443
No 280
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.60 E-value=3.9e+02 Score=24.87 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 048456 144 EEARLSVLLPLV 155 (211)
Q Consensus 144 L~~en~~L~~~l 155 (211)
|+.+-+.++.+|
T Consensus 56 l~~~rN~~sk~i 67 (484)
T 3lss_A 56 SKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 281
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.31 E-value=2e+02 Score=23.58 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYET 160 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~ 160 (211)
-...+.+|..++.+|+.+|..|..+-+....
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888777766543
No 282
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.15 E-value=3.2e+02 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHY 158 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L 158 (211)
|..-|+.|..|+.++..|...+...
T Consensus 130 i~~AertV~kLqkeiD~LEDeL~~e 154 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKVAHA 154 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544444444444433
No 283
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.00 E-value=2e+02 Score=19.87 Aligned_cols=36 Identities=8% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 130 NLAYMEKLKKEIDNEEARLSVLLPLVSHYETECKVL 165 (211)
Q Consensus 130 Kk~yieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L 165 (211)
-+.|++-++.++..|+..-....++++...+.+.+|
T Consensus 8 H~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eL 43 (65)
T 3t97_B 8 HQTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDL 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777776666666666665554443
No 284
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.65 E-value=49 Score=29.40 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYE 159 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~ 159 (211)
..||.+|..++.+...|...+..++
T Consensus 7 ~~lE~~Il~~~~~i~~L~~~l~~~~ 31 (319)
T 1fzc_C 7 MKYEASILTHDSSIRYLQEIYNSNN 31 (319)
T ss_dssp ---CTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3455555555554444444444443
No 285
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=21.43 E-value=2.5e+02 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 152 LPLVSHYETECKVLGKMNREMKEMM 176 (211)
Q Consensus 152 ~~~l~~L~~~~~~L~~EN~~Lk~~L 176 (211)
..+++..++....+..+-.+|..+|
T Consensus 14 ~KqL~~~~q~~~e~e~~k~eL~~~~ 38 (107)
T 2no2_A 14 TKQVSMARQAQVDLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 286
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=21.23 E-value=49 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 175 MMEALENETAAKEAEFQALMEEKEALG 201 (211)
Q Consensus 175 ~L~~L~~q~~~~~a~~e~L~~Ei~rL~ 201 (211)
.|-+++.+.+....+.+.++.|++.|+
T Consensus 10 klravenelhynkslleevkdelqkmr 36 (38)
T 1c94_A 10 KLRAVENELHYNKSLLEEVKDELQKMR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345566666666667777777777654
No 287
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.17 E-value=2.2e+02 Score=19.92 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048456 158 YETECKVLGKMNREMKEMMEAL 179 (211)
Q Consensus 158 L~~~~~~L~~EN~~Lk~~L~~L 179 (211)
++.....|..+-..++..+...
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444454444443
No 288
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.83 E-value=3.9e+02 Score=22.71 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSH 157 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~ 157 (211)
-+-|..|+.+...-..|..+|..
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~k 122 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAH 122 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333444443333333333333
No 289
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.79 E-value=2.3e+02 Score=20.14 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
+++..++..|......+..++..+...
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 290
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.68 E-value=2.4e+02 Score=24.10 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 048456 134 MEKLKKEIDNEEARLSVLLPLVSHYETECKVLGKM---NREMK 173 (211)
Q Consensus 134 ieeLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~E---N~~Lk 173 (211)
+++++..+..+..+...|..++..|..+...|... ...|.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
No 291
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.66 E-value=3.6e+02 Score=23.69 Aligned_cols=8 Identities=0% Similarity=-0.056 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 048456 130 NLAYMEKL 137 (211)
Q Consensus 130 Kk~yieeL 137 (211)
-..|.+.|
T Consensus 221 ~~~yf~~l 228 (426)
T 1lrz_A 221 DDKFYYNR 228 (426)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 34454444
No 292
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.64 E-value=2.2e+02 Score=19.70 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 136 KLKKEIDNEEARLSVLLPLVSHYETECKVLGK 167 (211)
Q Consensus 136 eLE~kv~~L~~en~~L~~~l~~L~~~~~~L~~ 167 (211)
.++.++...+..+..+...|..|++.+..|..
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~ 55 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333443333333333444444333333333
No 293
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.31 E-value=5.2e+02 Score=23.98 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048456 135 EKLKKEIDNEEARLSVLLPLVSHYETE 161 (211)
Q Consensus 135 eeLE~kv~~L~~en~~L~~~l~~L~~~ 161 (211)
-+|..+-..++.+...|.++...+..+
T Consensus 40 ~~ld~~~r~~~~~~~~l~~~rN~~sk~ 66 (484)
T 3lss_A 40 IEADKKWRRTQFLTEASKKLINICSKA 66 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 294
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.15 E-value=1.7e+02 Score=18.13 Aligned_cols=10 Identities=30% Similarity=0.179 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 048456 193 LMEEKEALGL 202 (211)
Q Consensus 193 L~~Ei~rL~~ 202 (211)
|..||.||+.
T Consensus 20 Le~EV~RL~~ 29 (36)
T 1kd8_A 20 LENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
Done!