BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048458
         (386 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DX3|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
           Subgroup, Target Efi-502086) From Agrobacterium
           Tumefaciens, With A Succinimide Residue
 pdb|4DXK|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
           Subgroup, Target Efi-502086) From Agrobacterium
           Tumefaciens, With A Succinimide Residue, Na And
           Phosphate
          Length = 400

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 275 IHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIE--VEHWI-------NLFT 325
           I +  ++ + E++  L+V  HT++   GLG    +   E +E  V  +I       +   
Sbjct: 3   ITKLETVRVAERTNLLWVLVHTDEGITGLG--ETFFGAETVETYVHEYIAPRVIGRDPLQ 60

Query: 326 VDLRAQFAWQYLGFGANDEVMLRNDDGELVLYD 358
           +DL AQ    YLGF ++   +  N   ++ L+D
Sbjct: 61  IDLLAQDLVGYLGFRSSGAEVRGNSAFDIALWD 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,353,340
Number of Sequences: 62578
Number of extensions: 459983
Number of successful extensions: 1003
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 1
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)