Query 048458
Match_columns 386
No_of_seqs 134 out of 1476
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 3.5E-33 7.6E-38 251.4 27.1 222 93-362 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 4.1E-15 9E-20 126.4 18.4 144 226-382 1-164 (164)
3 PLN03215 ascorbic acid mannose 99.6 7.8E-13 1.7E-17 124.0 23.1 329 2-384 4-373 (373)
4 PF08268 FBA_3: F-box associat 99.6 1.3E-13 2.8E-18 112.4 14.8 112 226-348 1-118 (129)
5 PHA02713 hypothetical protein; 99.2 2.7E-09 5.9E-14 107.9 20.0 222 91-369 297-542 (557)
6 KOG4441 Proteins containing BT 99.1 5.5E-09 1.2E-13 105.5 20.5 220 91-369 326-555 (571)
7 KOG4441 Proteins containing BT 99.1 8.4E-09 1.8E-13 104.2 18.2 199 114-369 303-508 (571)
8 PHA03098 kelch-like protein; P 99.0 1.7E-08 3.8E-13 102.2 19.9 202 113-369 312-520 (534)
9 PHA02713 hypothetical protein; 99.0 2.4E-08 5.2E-13 101.1 18.4 201 114-369 274-498 (557)
10 PLN02153 epithiospecifier prot 98.9 2.2E-07 4.7E-12 88.7 20.6 166 195-368 100-292 (341)
11 PHA02790 Kelch-like protein; P 98.9 1.7E-07 3.7E-12 93.4 20.0 182 114-366 289-476 (480)
12 TIGR03547 muta_rot_YjhT mutatr 98.8 1.6E-06 3.4E-11 82.9 23.1 161 196-369 85-307 (346)
13 PLN02193 nitrile-specifier pro 98.8 7E-07 1.5E-11 88.8 21.1 160 195-369 243-419 (470)
14 TIGR03548 mutarot_permut cycli 98.8 1.3E-06 2.8E-11 82.7 21.5 155 195-368 87-287 (323)
15 PF12937 F-box-like: F-box-lik 98.7 1.7E-09 3.7E-14 71.4 -0.0 42 2-43 1-42 (47)
16 PRK14131 N-acetylneuraminic ac 98.7 2.6E-06 5.7E-11 82.3 19.7 162 195-369 105-329 (376)
17 PHA03098 kelch-like protein; P 98.6 2E-06 4.4E-11 87.1 18.7 153 196-369 311-473 (534)
18 PF00646 F-box: F-box domain; 98.6 5.1E-09 1.1E-13 69.4 -1.1 45 2-46 3-47 (48)
19 PLN02153 epithiospecifier prot 98.6 1.2E-05 2.6E-10 76.7 20.7 165 196-368 50-233 (341)
20 PHA02790 Kelch-like protein; P 98.5 4.8E-06 1E-10 83.1 18.1 144 91-295 312-456 (480)
21 PLN02193 nitrile-specifier pro 98.5 2E-05 4.3E-10 78.5 21.5 155 196-368 193-359 (470)
22 smart00256 FBOX A Receptor for 98.5 1.5E-08 3.3E-13 64.6 -1.0 39 5-43 1-39 (41)
23 PRK14131 N-acetylneuraminic ac 98.2 0.00041 8.9E-09 67.1 21.6 162 196-366 189-374 (376)
24 TIGR03547 muta_rot_YjhT mutatr 98.2 0.00039 8.4E-09 66.4 20.9 145 196-350 168-329 (346)
25 TIGR03548 mutarot_permut cycli 98.1 0.00016 3.5E-09 68.4 16.9 151 197-368 40-202 (323)
26 KOG0281 Beta-TrCP (transducin 97.6 0.0018 3.9E-08 59.5 12.8 43 2-44 75-121 (499)
27 KOG4693 Uncharacterized conser 97.5 0.003 6.6E-08 56.1 12.6 168 193-369 102-285 (392)
28 KOG1230 Protein containing rep 97.4 0.012 2.7E-07 55.5 16.4 171 194-369 152-349 (521)
29 KOG0379 Kelch repeat-containin 97.2 0.024 5.2E-07 56.6 17.3 163 197-369 89-258 (482)
30 KOG2120 SCF ubiquitin ligase, 97.0 0.00012 2.6E-09 66.2 -0.6 39 2-40 98-136 (419)
31 KOG0379 Kelch repeat-containin 96.8 0.044 9.6E-07 54.8 14.9 165 195-369 138-310 (482)
32 PF13964 Kelch_6: Kelch motif 95.9 0.021 4.6E-07 37.6 4.9 43 223-266 4-47 (50)
33 KOG4693 Uncharacterized conser 95.9 0.084 1.8E-06 47.2 9.7 162 192-367 40-231 (392)
34 KOG1230 Protein containing rep 95.6 0.66 1.4E-05 44.2 15.1 162 197-369 99-287 (521)
35 PF01344 Kelch_1: Kelch motif; 95.5 0.055 1.2E-06 34.9 5.6 42 224-266 5-47 (47)
36 KOG2997 F-box protein FBX9 [Ge 95.3 0.0039 8.5E-08 56.8 -0.4 46 2-47 107-157 (366)
37 KOG0274 Cdc4 and related F-box 94.2 7.2 0.00016 39.6 19.7 42 2-43 108-149 (537)
38 PF07762 DUF1618: Protein of u 94.1 0.52 1.1E-05 38.0 9.2 83 248-330 6-100 (131)
39 PF07646 Kelch_2: Kelch motif; 94.0 0.19 4.1E-06 32.8 5.3 43 223-265 4-47 (49)
40 PF08450 SGL: SMP-30/Gluconola 93.8 4.7 0.0001 36.1 22.4 154 197-370 61-223 (246)
41 PF13360 PQQ_2: PQQ-like domai 93.8 4.5 9.7E-05 35.7 17.5 144 197-367 87-237 (238)
42 COG3055 Uncharacterized protei 92.6 1.5 3.3E-05 41.1 10.5 123 194-329 111-268 (381)
43 PF13418 Kelch_4: Galactose ox 91.9 0.36 7.7E-06 31.4 4.3 40 223-263 4-44 (49)
44 PRK11138 outer membrane biogen 91.7 2.3 5.1E-05 41.2 11.7 116 225-366 64-184 (394)
45 PF07893 DUF1668: Protein of u 91.6 11 0.00023 36.0 15.7 134 92-269 71-223 (342)
46 TIGR01640 F_box_assoc_1 F-box 90.9 5.9 0.00013 35.1 12.6 124 228-370 3-137 (230)
47 PF13964 Kelch_6: Kelch motif 90.9 0.61 1.3E-05 30.4 4.7 22 112-133 28-49 (50)
48 PF02191 OLF: Olfactomedin-lik 90.8 12 0.00027 33.8 15.8 129 223-369 71-212 (250)
49 smart00284 OLF Olfactomedin-li 90.6 12 0.00027 33.9 14.0 129 223-369 76-217 (255)
50 PF10282 Lactonase: Lactonase, 90.2 17 0.00037 34.5 20.2 153 195-368 165-332 (345)
51 KOG4152 Host cell transcriptio 89.4 11 0.00024 37.3 13.3 17 353-369 295-311 (830)
52 PF07893 DUF1668: Protein of u 89.1 8.9 0.00019 36.5 12.8 114 248-369 86-216 (342)
53 KOG2055 WD40 repeat protein [G 88.9 16 0.00034 35.6 13.9 148 195-369 234-383 (514)
54 COG4257 Vgb Streptogramin lyas 88.5 19 0.00042 32.9 14.2 232 91-369 65-314 (353)
55 PF07250 Glyoxal_oxid_N: Glyox 88.3 8 0.00017 34.8 11.1 153 195-367 45-205 (243)
56 PF02897 Peptidase_S9_N: Proly 88.2 27 0.00058 34.0 19.2 146 196-368 252-412 (414)
57 TIGR03300 assembly_YfgL outer 88.0 10 0.00022 36.4 12.7 109 224-366 59-169 (377)
58 COG4257 Vgb Streptogramin lyas 86.7 24 0.00052 32.3 12.9 125 91-269 193-318 (353)
59 smart00612 Kelch Kelch domain. 86.3 1.2 2.5E-05 28.1 3.5 34 195-231 14-47 (47)
60 COG1520 FOG: WD40-like repeat 85.3 14 0.0003 35.5 11.9 113 226-367 64-178 (370)
61 TIGR03300 assembly_YfgL outer 84.8 32 0.00069 32.9 14.3 134 197-366 76-214 (377)
62 PRK11138 outer membrane biogen 84.4 41 0.00089 32.5 19.6 141 197-365 171-317 (394)
63 PF08450 SGL: SMP-30/Gluconola 83.5 32 0.0007 30.6 16.4 112 226-367 5-129 (246)
64 PF10282 Lactonase: Lactonase, 82.1 47 0.001 31.5 16.7 119 230-369 154-286 (345)
65 KOG0294 WD40 repeat-containing 81.7 40 0.00086 31.4 12.3 112 225-366 47-163 (362)
66 PF13360 PQQ_2: PQQ-like domai 81.4 36 0.00079 29.8 17.0 139 197-366 4-146 (238)
67 PF06433 Me-amine-dh_H: Methyl 80.4 22 0.00047 33.6 10.5 122 230-366 195-326 (342)
68 PLN02772 guanylate kinase 80.2 11 0.00025 36.3 8.9 76 224-313 28-107 (398)
69 COG2706 3-carboxymuconate cycl 80.1 54 0.0012 30.9 15.7 119 230-369 155-285 (346)
70 TIGR03075 PQQ_enz_alc_DH PQQ-d 80.1 30 0.00065 35.1 12.5 122 224-367 63-196 (527)
71 COG2706 3-carboxymuconate cycl 78.7 60 0.0013 30.6 19.4 157 195-369 166-332 (346)
72 smart00564 PQQ beta-propeller 77.0 7.6 0.00017 22.4 4.4 26 341-366 5-30 (33)
73 PF01344 Kelch_1: Kelch motif; 76.5 16 0.00035 22.9 7.2 44 278-327 4-47 (47)
74 KOG0293 WD40 repeat-containing 76.1 69 0.0015 31.0 12.4 135 196-366 334-476 (519)
75 PF07646 Kelch_2: Kelch motif; 75.6 6.2 0.00013 25.5 4.1 42 280-325 6-47 (49)
76 COG3386 Gluconolactonase [Carb 75.5 60 0.0013 30.4 12.1 32 231-269 37-68 (307)
77 PLN00181 protein SPA1-RELATED; 75.0 1.2E+02 0.0027 32.4 22.5 100 248-362 640-740 (793)
78 COG4946 Uncharacterized protei 74.5 62 0.0013 31.9 11.8 35 334-369 364-399 (668)
79 TIGR03074 PQQ_membr_DH membran 74.3 63 0.0014 34.5 13.1 33 223-263 187-221 (764)
80 KOG4341 F-box protein containi 74.3 0.79 1.7E-05 44.0 -0.7 38 3-40 73-110 (483)
81 KOG0289 mRNA splicing factor [ 72.9 93 0.002 30.3 12.5 117 226-369 354-471 (506)
82 PF05096 Glu_cyclase_2: Glutam 72.0 79 0.0017 28.8 13.8 111 229-369 54-167 (264)
83 smart00612 Kelch Kelch domain. 71.7 12 0.00027 23.1 4.8 20 248-267 15-35 (47)
84 PF01011 PQQ: PQQ enzyme repea 71.4 8.9 0.00019 23.3 3.8 26 343-368 1-26 (38)
85 PF13415 Kelch_3: Galactose ox 70.9 9.1 0.0002 24.7 4.0 37 230-267 1-39 (49)
86 TIGR03866 PQQ_ABC_repeats PQQ- 69.9 83 0.0018 28.2 22.7 108 248-372 179-292 (300)
87 PF05096 Glu_cyclase_2: Glutam 69.2 92 0.002 28.4 14.6 140 194-369 66-213 (264)
88 PF13418 Kelch_4: Galactose ox 68.8 10 0.00022 24.2 4.0 22 194-216 27-48 (49)
89 KOG0310 Conserved WD40 repeat- 68.2 1.3E+02 0.0028 29.7 14.2 151 195-382 47-207 (487)
90 KOG2437 Muskelin [Signal trans 68.0 9.7 0.00021 37.6 5.0 105 192-296 284-396 (723)
91 PRK11028 6-phosphogluconolacto 67.7 1.1E+02 0.0023 28.6 12.4 97 248-361 12-111 (330)
92 cd00216 PQQ_DH Dehydrogenases 67.3 66 0.0014 32.3 11.2 31 224-262 55-87 (488)
93 cd01206 Homer Homer type EVH1 67.3 12 0.00026 29.0 4.4 39 114-182 13-52 (111)
94 PF13570 PQQ_3: PQQ-like domai 66.3 7.5 0.00016 23.8 2.7 26 224-257 15-40 (40)
95 PRK11028 6-phosphogluconolacto 65.6 1.2E+02 0.0025 28.3 14.6 122 229-369 184-315 (330)
96 PF13859 BNR_3: BNR repeat-lik 63.3 72 0.0016 29.9 9.9 85 224-323 124-212 (310)
97 KOG0316 Conserved WD40 repeat- 62.6 1.2E+02 0.0026 27.3 14.4 133 195-364 80-217 (307)
98 cd01207 Ena-Vasp Enabled-VASP- 62.3 26 0.00057 27.3 5.6 42 114-182 11-52 (111)
99 KOG1446 Histone H3 (Lys4) meth 60.5 1.4E+02 0.0031 27.6 13.4 109 230-365 151-267 (311)
100 KOG3545 Olfactomedin and relat 60.1 1.3E+02 0.0029 27.1 11.9 143 206-369 56-211 (249)
101 PF03088 Str_synth: Strictosid 59.4 25 0.00054 26.3 4.9 16 352-367 37-52 (89)
102 KOG2437 Muskelin [Signal trans 58.8 19 0.00042 35.6 5.2 138 222-369 262-421 (723)
103 COG4946 Uncharacterized protei 57.5 2.1E+02 0.0045 28.5 13.9 142 197-369 288-440 (668)
104 KOG0289 mRNA splicing factor [ 56.1 2.1E+02 0.0045 28.1 13.8 106 195-328 368-474 (506)
105 KOG2055 WD40 repeat protein [G 55.8 40 0.00086 33.0 6.7 61 304-369 235-297 (514)
106 TIGR03866 PQQ_ABC_repeats PQQ- 54.1 1.6E+02 0.0035 26.2 20.5 111 229-366 124-243 (300)
107 PF12458 DUF3686: ATPase invol 53.7 1E+02 0.0022 30.1 9.0 64 232-312 321-384 (448)
108 KOG0647 mRNA export protein (c 52.7 1.2E+02 0.0026 28.2 8.8 71 286-369 40-111 (347)
109 PF13088 BNR_2: BNR repeat-lik 51.8 1.8E+02 0.0039 26.1 12.1 129 198-347 136-275 (275)
110 KOG4547 WD40 repeat-containing 51.6 2.5E+02 0.0055 28.3 11.6 98 248-365 80-177 (541)
111 KOG0295 WD40 repeat-containing 48.9 1.9E+02 0.004 27.7 9.7 66 286-366 303-370 (406)
112 KOG0321 WD40 repeat-containing 48.6 50 0.0011 33.7 6.3 55 248-314 74-132 (720)
113 cd00260 Sialidase Sialidases o 48.0 2.4E+02 0.0052 26.5 12.6 89 225-327 150-242 (351)
114 KOG0647 mRNA export protein (c 46.9 2.5E+02 0.0053 26.2 10.5 91 248-363 94-187 (347)
115 cd00216 PQQ_DH Dehydrogenases 46.8 3.1E+02 0.0068 27.4 15.5 128 227-367 106-271 (488)
116 PRK04043 tolB translocation pr 46.1 3E+02 0.0065 27.0 13.2 101 248-369 213-318 (419)
117 KOG0639 Transducin-like enhanc 45.2 1.1E+02 0.0024 30.4 7.9 100 247-365 439-544 (705)
118 TIGR02658 TTQ_MADH_Hv methylam 45.0 2.9E+02 0.0062 26.5 24.3 128 228-370 203-342 (352)
119 KOG2106 Uncharacterized conser 44.5 3.4E+02 0.0074 27.2 13.6 41 228-269 285-329 (626)
120 KOG0292 Vesicle coat complex C 44.2 1.5E+02 0.0032 31.9 9.1 76 282-369 212-290 (1202)
121 KOG0283 WD40 repeat-containing 44.0 4.1E+02 0.0089 28.0 16.1 81 91-219 371-457 (712)
122 KOG1274 WD40 repeat protein [G 43.8 4.5E+02 0.0097 28.4 17.2 104 195-323 75-179 (933)
123 PF03178 CPSF_A: CPSF A subuni 43.5 2.7E+02 0.0059 25.8 12.2 97 248-369 62-168 (321)
124 KOG0291 WD40-repeat-containing 43.5 4.3E+02 0.0092 28.0 14.1 111 229-367 360-473 (893)
125 PF13013 F-box-like_2: F-box-l 43.2 5.6 0.00012 31.0 -0.8 29 2-30 22-50 (109)
126 PF14870 PSII_BNR: Photosynthe 42.5 2.9E+02 0.0063 25.8 10.6 144 198-369 124-270 (302)
127 PRK05137 tolB translocation pr 41.5 3.5E+02 0.0076 26.5 13.5 151 196-368 130-286 (435)
128 KOG0315 G-protein beta subunit 41.1 2.8E+02 0.0061 25.2 13.5 144 196-368 146-296 (311)
129 KOG1274 WD40 repeat protein [G 40.7 4.1E+02 0.0088 28.7 11.6 99 248-363 160-265 (933)
130 COG3055 Uncharacterized protei 39.5 3.5E+02 0.0076 25.9 14.2 141 194-349 194-356 (381)
131 TIGR03032 conserved hypothetic 38.0 3.5E+02 0.0077 25.5 12.6 58 222-296 204-262 (335)
132 PTZ00334 trans-sialidase; Prov 37.1 2.5E+02 0.0054 30.0 9.6 84 224-323 263-349 (780)
133 KOG2048 WD40 repeat protein [G 37.0 5E+02 0.011 27.0 16.4 55 304-358 353-409 (691)
134 PF07250 Glyoxal_oxid_N: Glyox 36.7 1.2E+02 0.0027 27.3 6.6 88 250-350 48-136 (243)
135 KOG2502 Tub family proteins [G 35.7 20 0.00043 33.7 1.4 37 2-38 45-89 (355)
136 KOG0294 WD40 repeat-containing 34.5 4E+02 0.0086 25.1 13.2 92 195-313 188-282 (362)
137 PF13854 Kelch_5: Kelch motif 33.7 1.1E+02 0.0024 18.7 4.3 37 221-257 5-41 (42)
138 KOG1920 IkappaB kinase complex 33.3 7.4E+02 0.016 27.9 16.6 70 248-330 266-336 (1265)
139 KOG0649 WD40 repeat protein [G 32.9 3.8E+02 0.0082 24.3 10.1 66 304-369 81-153 (325)
140 KOG0291 WD40-repeat-containing 32.7 6.3E+02 0.014 26.8 20.8 111 225-363 439-553 (893)
141 COG3490 Uncharacterized protei 31.0 4.4E+02 0.0096 24.6 10.8 164 195-369 90-270 (366)
142 cd00200 WD40 WD40 domain, foun 31.0 3.4E+02 0.0073 23.2 19.5 94 248-364 157-253 (289)
143 KOG2048 WD40 repeat protein [G 30.9 3.9E+02 0.0085 27.7 9.4 58 304-366 47-104 (691)
144 KOG1007 WD repeat protein TSSC 30.8 3.5E+02 0.0076 25.2 8.3 61 304-364 93-156 (370)
145 KOG2321 WD40 repeat protein [G 30.7 3.6E+02 0.0078 27.6 9.0 102 248-364 155-262 (703)
146 PF09910 DUF2139: Uncharacteri 30.6 4.6E+02 0.0099 24.6 9.7 103 248-364 78-185 (339)
147 PF12768 Rax2: Cortical protei 30.6 4.4E+02 0.0095 24.3 9.4 65 194-265 14-81 (281)
148 cd01262 PH_PDK1 3-Phosphoinosi 30.3 1.6E+02 0.0036 21.9 5.2 23 343-365 17-39 (89)
149 cd00200 WD40 WD40 domain, foun 28.9 3.7E+02 0.008 23.0 19.8 94 248-364 115-211 (289)
150 PRK13684 Ycf48-like protein; P 28.6 5E+02 0.011 24.4 12.3 139 200-367 154-295 (334)
151 PF14870 PSII_BNR: Photosynthe 28.1 5E+02 0.011 24.3 15.8 93 206-324 47-140 (302)
152 PF12217 End_beta_propel: Cata 28.1 3.6E+02 0.0079 24.6 7.8 62 228-296 198-260 (367)
153 PF07433 DUF1513: Protein of u 27.4 5.2E+02 0.011 24.2 14.6 69 195-269 27-98 (305)
154 PRK05137 tolB translocation pr 26.3 6.2E+02 0.013 24.7 21.2 145 195-369 269-421 (435)
155 COG1520 FOG: WD40-like repeat 26.1 5.7E+02 0.012 24.2 14.2 137 198-367 80-224 (370)
156 KOG0319 WD40-repeat-containing 25.5 6.7E+02 0.015 26.4 10.0 98 248-364 40-139 (775)
157 KOG3926 F-box proteins [Amino 25.3 26 0.00057 31.8 0.3 39 1-39 201-240 (332)
158 KOG0318 WD40 repeat stress pro 25.1 4.7E+02 0.01 26.4 8.6 33 335-367 491-524 (603)
159 KOG1310 WD40 repeat protein [G 25.1 4.6E+02 0.0099 26.7 8.6 30 335-364 277-307 (758)
160 KOG2106 Uncharacterized conser 23.6 6.5E+02 0.014 25.4 9.2 61 304-368 222-283 (626)
161 PF07569 Hira: TUP1-like enhan 23.5 5.1E+02 0.011 22.8 10.0 38 335-372 70-107 (219)
162 KOG4378 Nuclear protein COP1 [ 23.1 4.9E+02 0.011 26.2 8.3 29 335-363 254-283 (673)
163 TIGR02658 TTQ_MADH_Hv methylam 22.3 7E+02 0.015 23.9 22.9 39 332-370 248-298 (352)
164 KOG0315 G-protein beta subunit 22.1 6.1E+02 0.013 23.1 18.2 99 248-362 146-247 (311)
165 KOG0649 WD40 repeat protein [G 21.5 6.2E+02 0.013 23.0 13.3 112 231-371 127-247 (325)
166 KOG0300 WD40 repeat-containing 21.4 3.6E+02 0.0077 25.4 6.7 58 304-368 378-436 (481)
167 KOG0265 U5 snRNP-specific prot 21.1 4.7E+02 0.01 24.4 7.3 58 304-369 69-130 (338)
168 COG3386 Gluconolactonase [Carb 20.4 7.1E+02 0.015 23.3 11.6 58 226-295 219-277 (307)
169 PF00930 DPPIV_N: Dipeptidyl p 20.3 7.3E+02 0.016 23.4 12.4 114 248-370 158-278 (353)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=3.5e-33 Score=251.41 Aligned_cols=222 Identities=27% Similarity=0.422 Sum_probs=165.8
Q ss_pred EeeecccEEEeecCCCCccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecCC
Q 048458 93 VSSCSGLVCLLLNTFHSCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHRT 172 (386)
Q Consensus 93 ~~s~~GLl~~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~ 172 (386)
++|||||||+. . ... ++||||+||+++.||+++... ... ....+ +||||+.+
T Consensus 1 ~~sCnGLlc~~-~-~~~----~~V~NP~T~~~~~LP~~~~~~---------------~~~------~~~~~-~~G~d~~~ 52 (230)
T TIGR01640 1 VVPCDGLICFS-Y-GKR----LVVWNPSTGQSRWLPTPKSRR---------------SNK------ESDTY-FLGYDPIE 52 (230)
T ss_pred CcccceEEEEe-c-CCc----EEEECCCCCCEEecCCCCCcc---------------ccc------ccceE-EEeecccC
Confidence 47999999988 3 355 999999999999999876531 000 11235 99999999
Q ss_pred CCeEEEEEEEeeeccccccccccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEE
Q 048458 173 SDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVS 252 (386)
Q Consensus 173 ~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~ 252 (386)
++||||++..... . .....++||++++++||.+. ..+...... ..+|++||.+||++.. +.+ .....|++
T Consensus 53 ~~YKVv~~~~~~~-~-----~~~~~~~Vys~~~~~Wr~~~-~~~~~~~~~-~~~v~~~G~lyw~~~~-~~~-~~~~~Ivs 122 (230)
T TIGR01640 53 KQYKVLCFSDRSG-N-----RNQSEHQVYTLGSNSWRTIE-CSPPHHPLK-SRGVCINGVLYYLAYT-LKT-NPDYFIVS 122 (230)
T ss_pred CcEEEEEEEeecC-C-----CCCccEEEEEeCCCCccccc-cCCCCcccc-CCeEEECCEEEEEEEE-CCC-CCcEEEEE
Confidence 9999999976421 1 23568999999999999998 333222222 2399999999999976 432 11138999
Q ss_pred EECCCceee-eecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCC
Q 048458 253 FDFGDETFR-YRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQ 331 (386)
Q Consensus 253 fD~~~~~~~-~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~ 331 (386)
||+++|+|+ .+++|...... .....|++++|+|+++...... .+++||+|++++. ++|+++++|+....
T Consensus 123 FDl~~E~f~~~i~~P~~~~~~---~~~~~L~~~~G~L~~v~~~~~~------~~~~IWvl~d~~~-~~W~k~~~i~~~~~ 192 (230)
T TIGR01640 123 FDVSSERFKEFIPLPCGNSDS---VDYLSLINYKGKLAVLKQKKDT------NNFDLWVLNDAGK-QEWSKLFTVPIPPL 192 (230)
T ss_pred EEcccceEeeeeecCcccccc---ccceEEEEECCEEEEEEecCCC------CcEEEEEECCCCC-CceeEEEEEcCcch
Confidence 999999999 58999765321 2357899999999999886531 4699999998765 45999999986331
Q ss_pred ---ce-eEEEEEecCCeEEEEecC--Ce-EEEEECCCC
Q 048458 332 ---FA-WQYLGFGANDEVMLRNDD--GE-LVLYDHKTQ 362 (386)
Q Consensus 332 ---~~-~~~~~~~~~g~i~l~~~~--~~-l~~ydl~~~ 362 (386)
.. ..++++.++|+|++.... .. ++.||++++
T Consensus 193 ~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 193 PDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred hhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 11 268888888999987764 44 999999885
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=4.1e-15 Score=126.42 Aligned_cols=144 Identities=26% Similarity=0.515 Sum_probs=105.0
Q ss_pred eEEECCeEEEEEEeecCCCCCceEEEEEECCCcee-eeecCCCCCCCCCCccceeEEEEe-CCeEEEEEeeCCCCCCCCC
Q 048458 226 TVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETF-RYRKLPDCLYNTDHIHRERSIGIL-EKSIALFVSCHTEDNTAGL 303 (386)
Q Consensus 226 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~ 303 (386)
+|++||.+||++.. ..... ...|++||+.+|+| +.+++|...... .....|++. +|+||++......
T Consensus 1 gV~vnG~~hW~~~~-~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~---~~~~~L~~v~~~~L~~~~~~~~~------ 69 (164)
T PF07734_consen 1 GVFVNGALHWLAYD-ENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDD---DDSVSLSVVRGDCLCVLYQCDET------ 69 (164)
T ss_pred CEEECCEEEeeEEe-cCCCC-ceEEEEEeccccccCCEECCCCccCcc---CCEEEEEEecCCEEEEEEeccCC------
Confidence 58999999999988 43221 12799999999999 888999877522 466777554 7899999765442
Q ss_pred CEEEEEEEeecC-CCcceEEEEEeecCCCcee------EEEEEecCCeEEEEec-C------CeEEEEECCCCeEEEeee
Q 048458 304 GICSVYVMKENI-EVEHWINLFTVDLRAQFAW------QYLGFGANDEVMLRND-D------GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 304 ~~i~iW~l~~~~-~~~~W~~~~~i~~~~~~~~------~~~~~~~~g~i~l~~~-~------~~l~~ydl~~~~~~~v~~ 369 (386)
..++||+|++++ ..++|++.++|+....... ..+.+..++++++..+ . ..++.|+ +++..+++.+
T Consensus 70 ~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~ 148 (164)
T PF07734_consen 70 SKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDI 148 (164)
T ss_pred ccEEEEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEccc
Confidence 579999999765 2689999999996652211 2344555566666432 1 3488898 8889999987
Q ss_pred ----cCceeeeeeeecc
Q 048458 370 ----SNWVANAVIYTES 382 (386)
Q Consensus 370 ----~~~~~~~~~y~~s 382 (386)
..| +.+..|+||
T Consensus 149 ~~~~~~~-~~~~~YvpS 164 (164)
T PF07734_consen 149 EDKSSCW-PSICNYVPS 164 (164)
T ss_pred ccCCCCC-CCEEEECCC
Confidence 236 778899998
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.57 E-value=7.8e-13 Score=124.04 Aligned_cols=329 Identities=12% Similarity=0.078 Sum_probs=161.1
Q ss_pred CCCCcHHHHHHHHccCC-ccccceeeeccccccccccChhhHHHHhhcccCCCCcceeeEEeccccCCcccccc------
Q 048458 2 SKSLPAKFMLETLLKLP-VKTLTRFKCVSKQWHSVISNPTFVALHAKLSESTNKCYLVQYKEGNYSENNFSLCN------ 74 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP-~~sl~r~~~VcK~W~~liss~~F~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------ 74 (386)
+++||+|||..|..||| ..++.|||+|||+||+.+.... + ..+.+ ..+ .+++...... .++..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~--~~~--~~~~~~~~~~-~~~~~~~~~~~ 73 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFR--TRP--LILFNPINPS-ETLTDDRSYIS 73 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCcc--ccc--ccccCcccCC-CCccccccccc
Confidence 57899999999999998 5599999999999999876421 0 00000 000 1122110000 00000
Q ss_pred C-CC--cceeeccCCCCCCeEEeeecccEEEeecC---CCCccccEEEEccccccceecCCCCCCchhhhhhc-cccc--
Q 048458 75 S-NL--VQFDEVKFPINSTQIVSSCSGLVCLLLNT---FHSCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYR-SSAT-- 145 (386)
Q Consensus 75 ~-~~--~~~~~l~~p~~~~~~~~s~~GLl~~~~~~---~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~-~~~~-- 145 (386)
. .. .....+.++.. -++..|+|.-. +. .++ +.+.||+++.-..+|+-.... .+.++. ....
T Consensus 74 ~~~~~ls~~~~~r~~~~----~~~~~~WLik~-~~~~~~~~----~~Ll~PLsr~~~~~~~~~lnl-l~f~v~ei~~~y~ 143 (373)
T PLN03215 74 RPGAFLSRAAFFRVTLS----SSPSKGWLIKS-DMDVNSGR----FHLLNPLSRLPLRHSSESVDL-LEFTVSEIREAYQ 143 (373)
T ss_pred cccceeeeeEEEEeecC----CCCCCCcEEEE-eccccCCc----cEecCccccCccCCCCcccee-eeeEEEEccceEE
Confidence 0 00 00001111111 13568999876 33 245 899999999988777532221 011100 0000
Q ss_pred cccchhhhccCcceeeeEeeeeeecC-CCCeEEEEEEEeeeccccccccccceEEEEEcCCCceeecCCCCCCccccCCC
Q 048458 146 ASFIWEKEMKGSFATFAITGFGYDHR-TSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSN 224 (386)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~d~~-~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~ 224 (386)
...+. ...+-.+.+...+.+..... ..+|-|+++... -.+..+ +.++|..++ .... ...
T Consensus 144 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~------------g~l~~w--~~~~Wt~l~-~~~~----~~~ 203 (373)
T PLN03215 144 VLDWA-KRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD------------GKINYW--DGNVLKALK-QMGY----HFS 203 (373)
T ss_pred EEecc-cccccccceeEEEEEEeecCCCcceEEEEEeec------------CcEeee--cCCeeeEcc-CCCc----eee
Confidence 00000 00000000000000000000 011222222220 011112 257888876 3211 123
Q ss_pred ceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCC-C-CCCCCCCccceeEEEEeCCeEEEEEeeCCCCCC--
Q 048458 225 STVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLP-D-CLYNTDHIHRERSIGILEKSIALFVSCHTEDNT-- 300 (386)
Q Consensus 225 ~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P-~-~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~-- 300 (386)
.-++.+|.+|.+... +.+.++|.+-+ .+.+..+ . ..... .......|+++.|+|.+|.........
T Consensus 204 DIi~~kGkfYAvD~~--------G~l~~i~~~l~-i~~v~~~i~~~~~~g-~~~~~~yLVEs~GdLLmV~R~~~~~~~~~ 273 (373)
T PLN03215 204 DIIVHKGQTYALDSI--------GIVYWINSDLE-FSRFGTSLDENITDG-CWTGDRRFVECCGELYIVERLPKESTWKR 273 (373)
T ss_pred EEEEECCEEEEEcCC--------CeEEEEecCCc-eeeecceecccccCC-cccCceeEEEECCEEEEEEEEccCccccc
Confidence 479999999998654 67888884322 1222111 1 01000 002457899999999999875321100
Q ss_pred -------CCCCEEEEEEEeecCCCcceEEEEEeecCC-----CceeEEEEEe----cCCeEEEEecCCeEEEEECCCCeE
Q 048458 301 -------AGLGICSVYVMKENIEVEHWINLFTVDLRA-----QFAWQYLGFG----ANDEVMLRNDDGELVLYDHKTQEV 364 (386)
Q Consensus 301 -------~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~-----~~~~~~~~~~----~~g~i~l~~~~~~l~~ydl~~~~~ 364 (386)
.....++|+++|. ...+|+++.+++... ...++..+.. ..+.||+..+ ....+||++.++.
T Consensus 274 ~~~~~~~~~t~~f~VfklD~--~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd-~~~~v~~~~dg~~ 350 (373)
T PLN03215 274 KADGFEYSRTVGFKVYKFDD--ELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED-TMPKVFKLDNGNG 350 (373)
T ss_pred ccccccccceeEEEEEEEcC--CCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC-CcceEEECCCCCc
Confidence 1125689999985 347899998876443 1111111111 1235888754 4588999999996
Q ss_pred EEeee----cCceeeeeeeecccc
Q 048458 365 VQCES----SNWVANAVIYTESLV 384 (386)
Q Consensus 365 ~~v~~----~~~~~~~~~y~~slv 384 (386)
.-+-. ++. ..+..|+||++
T Consensus 351 ~~~~~~~~~~~~-~~~~~~~~~~~ 373 (373)
T PLN03215 351 SSIETTISESSQ-SSFEMFVPSFL 373 (373)
T ss_pred cceEeecCcccc-chheeeccccC
Confidence 55433 233 33456777764
No 4
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.56 E-value=1.3e-13 Score=112.39 Aligned_cols=112 Identities=21% Similarity=0.442 Sum_probs=85.6
Q ss_pred eEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCE
Q 048458 226 TVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGI 305 (386)
Q Consensus 226 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~ 305 (386)
++++||++||++.. .. .....|++||+++|+|+.+++|...... .....|++++|+|+++...... ....
T Consensus 1 gicinGvly~~a~~-~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~---~~~~~L~~~~G~L~~v~~~~~~----~~~~ 70 (129)
T PF08268_consen 1 GICINGVLYWLAWS-ED--SDNNVIVSFDVRSEKFRFIKLPEDPYSS---DCSSTLIEYKGKLALVSYNDQG----EPDS 70 (129)
T ss_pred CEEECcEEEeEEEE-CC--CCCcEEEEEEcCCceEEEEEeeeeeccc---cCccEEEEeCCeEEEEEecCCC----Ccce
Confidence 58999999999987 32 2348999999999999999999221111 5788999999999999887651 1246
Q ss_pred EEEEEEeecCCCcceEEEEEeecCC--C----ceeEEEEEecCCeEEEE
Q 048458 306 CSVYVMKENIEVEHWINLFTVDLRA--Q----FAWQYLGFGANDEVMLR 348 (386)
Q Consensus 306 i~iW~l~~~~~~~~W~~~~~i~~~~--~----~~~~~~~~~~~g~i~l~ 348 (386)
++||+|+|++ +++|+++..+-... . ..+.++++.++|+|++.
T Consensus 71 ~~iWvLeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 71 IDIWVLEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EEEEEeeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 9999999875 48899886643222 1 23388999999998887
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.16 E-value=2.7e-09 Score=107.93 Aligned_cols=222 Identities=11% Similarity=0.119 Sum_probs=136.3
Q ss_pred eEEeeecccEEEeecCC-C-CccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeee
Q 048458 91 QIVSSCSGLVCLLLNTF-H-SCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGY 168 (386)
Q Consensus 91 ~~~~s~~GLl~~~~~~~-~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (386)
.-++..+|-|.+.+... . .....++.+||.+++|..+|+++..+ .. .+.+.+
T Consensus 297 ~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R----------------~~--------~~~~~~-- 350 (557)
T PHA02713 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR----------------CR--------FSLAVI-- 350 (557)
T ss_pred eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh----------------hc--------eeEEEE--
Confidence 34455677776552211 1 11233789999999999999988664 10 111011
Q ss_pred ecCCCCeEEEEEEEeeeccccccccccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCC-----
Q 048458 169 DHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESD----- 243 (386)
Q Consensus 169 d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~----- 243 (386)
+ =||..++.... ......+++|+..+++|..++ .+|.. ......+.++|.+|.+++..+..
T Consensus 351 ~-----g~IYviGG~~~------~~~~~sve~Ydp~~~~W~~~~-~mp~~--r~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 351 D-----DTIYAIGGQNG------TNVERTIECYTMGDDKWKMLP-DMPIA--LSSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred C-----CEEEEECCcCC------CCCCceEEEEECCCCeEEECC-CCCcc--cccccEEEECCEEEEEeCCCcccccccc
Confidence 1 24444443211 122457999999999999998 66654 33445788999999998751110
Q ss_pred -----------CCCceEEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEE-EEEE
Q 048458 244 -----------GTNKDIIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGIC-SVYV 310 (386)
Q Consensus 244 -----------~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i-~iW~ 310 (386)
......+.+||+.+++|+.+ ++|... ....+++++|+|+++++.... . ... .+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-------~~~~~~~~~~~IYv~GG~~~~----~-~~~~~ve~ 484 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-------IRPGVVSHKDDIYVVCDIKDE----K-NVKTCIFR 484 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCccc-------ccCcEEEECCEEEEEeCCCCC----C-ccceeEEE
Confidence 00125699999999999988 554432 345678999999999875431 0 111 1233
Q ss_pred EeecCCC-cceEEEEEeecCCCceeEEEEEecCCeEEEEec-CC--eEEEEECCCCeEEEeee
Q 048458 311 MKENIEV-EHWINLFTVDLRAQFAWQYLGFGANDEVMLRND-DG--ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 311 l~~~~~~-~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~-~~--~l~~ydl~~~~~~~v~~ 369 (386)
.+- .. .+|+....++..... ..+++. +|.||+..+ ++ .+-.||++|++|+.+.-
T Consensus 485 Ydp--~~~~~W~~~~~m~~~r~~--~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 485 YNT--NTYNGWELITTTESRLSA--LHTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ecC--CCCCCeeEccccCccccc--ceeEEE-CCEEEEEeeecceeehhhcCcccccccchhh
Confidence 332 22 479988766543211 122222 567887653 22 48899999999998865
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.13 E-value=5.5e-09 Score=105.54 Aligned_cols=220 Identities=12% Similarity=0.142 Sum_probs=144.1
Q ss_pred eEEeeecccEEEeecCC-C-CccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeee
Q 048458 91 QIVSSCSGLVCLLLNTF-H-SCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGY 168 (386)
Q Consensus 91 ~~~~s~~GLl~~~~~~~-~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (386)
.-++..+|.|.+.+..+ + ..-..+..+||.|.+|..+|++...| . ++|.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R---------------~--------------~~~v 376 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR---------------S--------------DFGV 376 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc---------------c--------------ccee
Confidence 55666788776662222 1 12244889999999999999999886 1 1111
Q ss_pred ecCCCCeEEEEEEEeeeccccccccccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCce
Q 048458 169 DHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKD 248 (386)
Q Consensus 169 d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~ 248 (386)
.. -..++..+..... ...-..+|.|+..++.|..++ .++. .......+.++|.+|-+++. ......-.
T Consensus 377 ~~--l~g~iYavGG~dg------~~~l~svE~YDp~~~~W~~va-~m~~--~r~~~gv~~~~g~iYi~GG~-~~~~~~l~ 444 (571)
T KOG4441|consen 377 AV--LDGKLYAVGGFDG------EKSLNSVECYDPVTNKWTPVA-PMLT--RRSGHGVAVLGGKLYIIGGG-DGSSNCLN 444 (571)
T ss_pred EE--ECCEEEEEecccc------ccccccEEEecCCCCcccccC-CCCc--ceeeeEEEEECCEEEEEcCc-CCCccccc
Confidence 11 1244555544221 144568999999999999999 5544 24455678999999999986 32222347
Q ss_pred EEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEee
Q 048458 249 IIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVD 327 (386)
Q Consensus 249 ~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~ 327 (386)
.+.+||+.+++|+.+ +++... ....+++.+|+|+++++.... +...+++.+-. ....|+.+..+.
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R-------~~~g~a~~~~~iYvvGG~~~~---~~~~~VE~ydp----~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRR-------SGFGVAVLNGKIYVVGGFDGT---SALSSVERYDP----ETNQWTMVAPMT 510 (571)
T ss_pred eEEEEcCCCCceeecCCccccc-------ccceEEEECCEEEEECCccCC---CccceEEEEcC----CCCceeEcccCc
Confidence 899999999999988 566543 344589999999999997651 22233333322 246899885554
Q ss_pred cCCCceeEEEE-EecCCeEEEEecC------CeEEEEECCCCeEEEeee
Q 048458 328 LRAQFAWQYLG-FGANDEVMLRNDD------GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 328 ~~~~~~~~~~~-~~~~g~i~l~~~~------~~l~~ydl~~~~~~~v~~ 369 (386)
... ...+ +.-++.+|+.... ..+-.||+++++|+...-
T Consensus 511 ~~r----s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 511 SPR----SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccc----ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 333 1222 2224567765431 249999999999998754
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.06 E-value=8.4e-09 Score=104.19 Aligned_cols=199 Identities=12% Similarity=0.158 Sum_probs=134.2
Q ss_pred EEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecCCCCeEEEEEEEeeecccccccc
Q 048458 114 MFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRR 193 (386)
Q Consensus 114 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 193 (386)
+..+||.+++|..+.+++..+ . . . +...- . -+|..++.... + ..
T Consensus 303 ve~yd~~~~~w~~~a~m~~~r---------------~-~--------~---~~~~~--~--~~lYv~GG~~~--~---~~ 346 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMPSPR---------------C-R--------V---GVAVL--N--GKLYVVGGYDS--G---SD 346 (571)
T ss_pred eEEecCCcCcEeecCCCCccc---------------c-c--------c---cEEEE--C--CEEEEEccccC--C---Cc
Confidence 678899999999999998775 1 1 1 11111 1 15555544321 0 14
Q ss_pred ccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCCC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYNT 272 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~ 272 (386)
.-..+++|++.++.|..++ .++.. ......+.++|.+|.+++..+ ...-..+..||+.+++|..+ +++..
T Consensus 347 ~l~~ve~YD~~~~~W~~~a-~M~~~--R~~~~v~~l~g~iYavGG~dg--~~~l~svE~YDp~~~~W~~va~m~~~---- 417 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWTPVA-PMNTK--RSDFGVAVLDGKLYAVGGFDG--EKSLNSVECYDPVTNKWTPVAPMLTR---- 417 (571)
T ss_pred ccceEEEecCCCCceeccC-CccCc--cccceeEEECCEEEEEecccc--ccccccEEEecCCCCcccccCCCCcc----
Confidence 5678999999999999988 45443 445567899999999998832 23336799999999999998 46653
Q ss_pred CCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecC-
Q 048458 273 DHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDD- 351 (386)
Q Consensus 273 ~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~- 351 (386)
......++.+|+|+++++.....+ .-.+++.+-- .+++|+.+..|...... ..+++. ++.||...+.
T Consensus 418 ---r~~~gv~~~~g~iYi~GG~~~~~~--~l~sve~YDP----~t~~W~~~~~M~~~R~~--~g~a~~-~~~iYvvGG~~ 485 (571)
T KOG4441|consen 418 ---RSGHGVAVLGGKLYIIGGGDGSSN--CLNSVECYDP----ETNTWTLIAPMNTRRSG--FGVAVL-NGKIYVVGGFD 485 (571)
T ss_pred ---eeeeEEEEECCEEEEEcCcCCCcc--ccceEEEEcC----CCCceeecCCccccccc--ceEEEE-CCEEEEECCcc
Confidence 356677999999999999665200 1123333222 34689998877654421 223333 4567776542
Q ss_pred -----CeEEEEECCCCeEEEeee
Q 048458 352 -----GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 352 -----~~l~~ydl~~~~~~~v~~ 369 (386)
..+-.||+++++|..+..
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred CCCccceEEEEcCCCCceeEccc
Confidence 238899999999999863
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.04 E-value=1.7e-08 Score=102.16 Aligned_cols=202 Identities=13% Similarity=0.158 Sum_probs=127.2
Q ss_pred cEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecCCCCeEEEEEEEeeeccccccc
Q 048458 113 PMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFR 192 (386)
Q Consensus 113 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 192 (386)
.++.+||.|++|..+|+++..+ ... .+. .+ + + ++..++.... .
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R----------------~~~-------~~~-~~--~---~--~lyv~GG~~~------~ 354 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPR----------------KNP-------GVT-VF--N---N--RIYVIGGIYN------S 354 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccc----------------ccc-------eEE-EE--C---C--EEEEEeCCCC------C
Confidence 4889999999999999887654 110 111 11 1 2 3444433211 1
Q ss_pred cccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCC
Q 048458 193 REFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYN 271 (386)
Q Consensus 193 ~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~ 271 (386)
.....+++|+..+++|+..+ .+|.. ......+.++|.+|-+++. ..+......+..||+.+++|+.+ ++|...
T Consensus 355 ~~~~~v~~yd~~~~~W~~~~-~lp~~--r~~~~~~~~~~~iYv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-- 428 (534)
T PHA03098 355 ISLNTVESWKPGESKWREEP-PLIFP--RYNPCVVNVNNLIYVIGGI-SKNDELLKTVECFSLNTNKWSKGSPLPISH-- 428 (534)
T ss_pred EecceEEEEcCCCCceeeCC-CcCcC--CccceEEEECCEEEEECCc-CCCCcccceEEEEeCCCCeeeecCCCCccc--
Confidence 23457899999999999988 56543 3455678899999999875 32222236799999999999988 455432
Q ss_pred CCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecC
Q 048458 272 TDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDD 351 (386)
Q Consensus 272 ~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~ 351 (386)
.....+..+|+|+++++....+.... .-.+|..+- .+.+|+.+..++..... ..+++ -++.|++..+.
T Consensus 429 -----~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~v~~yd~--~~~~W~~~~~~~~~r~~--~~~~~-~~~~iyv~GG~ 496 (534)
T PHA03098 429 -----YGGCAIYHDGKIYVIGGISYIDNIKV--YNIVESYNP--VTNKWTELSSLNFPRIN--ASLCI-FNNKIYVVGGD 496 (534)
T ss_pred -----cCceEEEECCEEEEECCccCCCCCcc--cceEEEecC--CCCceeeCCCCCccccc--ceEEE-ECCEEEEEcCC
Confidence 22345678999999988654211111 112566663 24689987544432211 12222 25677775431
Q ss_pred ------CeEEEEECCCCeEEEeee
Q 048458 352 ------GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 352 ------~~l~~ydl~~~~~~~v~~ 369 (386)
..+..||+++++|+.+.-
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCC
Confidence 359999999999998864
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.99 E-value=2.4e-08 Score=101.12 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=124.7
Q ss_pred EEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecCCCCeEEEEEEEeeecccccccc
Q 048458 114 MFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRR 193 (386)
Q Consensus 114 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 193 (386)
+..+||.|++|..+++++..+ . . .+.+.+ . =+|+.++.... . ..
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r---------------~-~--------~~~a~l-----~--~~IYviGG~~~--~---~~ 317 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHI---------------I-N--------YASAIV-----D--NEIIIAGGYNF--N---NP 317 (557)
T ss_pred EEEEeCCCCeEEECCCCCccc---------------c-c--------eEEEEE-----C--CEEEEEcCCCC--C---CC
Confidence 678899999999999887663 0 0 111011 1 14444433210 0 02
Q ss_pred ccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCCC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYNT 272 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~ 272 (386)
....++.|+..++.|..++ .++.. ......+.++|++|.+++. .. ......+.+||+.+++|+.+ ++|...
T Consensus 318 ~~~~v~~Yd~~~n~W~~~~-~m~~~--R~~~~~~~~~g~IYviGG~-~~-~~~~~sve~Ydp~~~~W~~~~~mp~~r--- 389 (557)
T PHA02713 318 SLNKVYKINIENKIHVELP-PMIKN--RCRFSLAVIDDTIYAIGGQ-NG-TNVERTIECYTMGDDKWKMLPDMPIAL--- 389 (557)
T ss_pred ccceEEEEECCCCeEeeCC-CCcch--hhceeEEEECCEEEEECCc-CC-CCCCceEEEEECCCCeEEECCCCCccc---
Confidence 2457899999999999888 56543 3445678999999999976 32 12235699999999999988 555543
Q ss_pred CCccceeEEEEeCCeEEEEEeeCCCCCC---------------CCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEE
Q 048458 273 DHIHRERSIGILEKSIALFVSCHTEDNT---------------AGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYL 337 (386)
Q Consensus 273 ~~~~~~~~L~~~~G~L~lv~~~~~~~~~---------------~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 337 (386)
.....++++|+|+++++....... ..... +.+.+- ....|+.+..++.... .+-
T Consensus 390 ----~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~--ve~YDP--~td~W~~v~~m~~~r~---~~~ 458 (557)
T PHA02713 390 ----SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK--VIRYDT--VNNIWETLPNFWTGTI---RPG 458 (557)
T ss_pred ----ccccEEEECCEEEEEeCCCcccccccccccccccccccccccce--EEEECC--CCCeEeecCCCCcccc---cCc
Confidence 334567889999999885431000 00122 333331 2367998765543321 122
Q ss_pred EEecCCeEEEEecC-------CeEEEEECCC-CeEEEeee
Q 048458 338 GFGANDEVMLRNDD-------GELVLYDHKT-QEVVQCES 369 (386)
Q Consensus 338 ~~~~~g~i~l~~~~-------~~l~~ydl~~-~~~~~v~~ 369 (386)
++.-+|.||+..+. ..+..||+++ ++|+.+.-
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 22335678876431 2367999999 89998754
No 10
>PLN02153 epithiospecifier protein
Probab=98.91 E-value=2.2e-07 Score=88.70 Aligned_cols=166 Identities=12% Similarity=0.095 Sum_probs=97.3
Q ss_pred cceEEEEEcCCCceeecCCCCCC---ccccCCCceEEECCeEEEEEEeecCCC-----CCceEEEEEECCCceeeeecCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPC---IPCLSSNSTVHLNGAVHWMAIRKESDG-----TNKDIIVSFDFGDETFRYRKLP 266 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~---~~~~~~~~~v~~~G~lywl~~~~~~~~-----~~~~~il~fD~~~~~~~~i~~P 266 (386)
...+++|+..++.|+.++ .++. ......+..+..+|++|.+++. ..+. ..-..+.+||+.+.+|..++.+
T Consensus 100 ~~~v~~yd~~t~~W~~~~-~~~~~~~p~~R~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~ 177 (341)
T PLN02153 100 FSDFYSYDTVKNEWTFLT-KLDEEGGPEARTFHSMASDENHVYVFGGV-SKGGLMKTPERFRTIEAYNIADGKWVQLPDP 177 (341)
T ss_pred cCcEEEEECCCCEEEEec-cCCCCCCCCCceeeEEEEECCEEEEECCc-cCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence 346899999999999887 4311 1123345578899999999875 3211 0114689999999999987543
Q ss_pred CCCCCCCCccceeEEEEeCCeEEEEEeeCCCC---CCCCCCEEEEEEEeecCCCcceEEEEEee-cCCCceeEEEEEecC
Q 048458 267 DCLYNTDHIHRERSIGILEKSIALFVSCHTED---NTAGLGICSVYVMKENIEVEHWINLFTVD-LRAQFAWQYLGFGAN 342 (386)
Q Consensus 267 ~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~---~~~~~~~i~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~ 342 (386)
...... .....++..+|+|+++.+..... .......-++++++- ...+|+++.... ..........+ .-+
T Consensus 178 ~~~~~~---r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r~~~~~~-~~~ 251 (341)
T PLN02153 178 GENFEK---RGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSARSVFAHA-VVG 251 (341)
T ss_pred CCCCCC---CCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCcceeeeE-EEC
Confidence 211100 12334577899999987643210 000001123555553 236799876432 11111111122 223
Q ss_pred CeEEEEecC---------------CeEEEEECCCCeEEEee
Q 048458 343 DEVMLRNDD---------------GELVLYDHKTQEVVQCE 368 (386)
Q Consensus 343 g~i~l~~~~---------------~~l~~ydl~~~~~~~v~ 368 (386)
+.||+.... ..++.||+++++|+.+.
T Consensus 252 ~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 252 KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 566664321 15899999999999885
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.89 E-value=1.7e-07 Score=93.42 Aligned_cols=182 Identities=8% Similarity=0.072 Sum_probs=117.5
Q ss_pred EEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecCCCCeEEEEEEEeeecccccccc
Q 048458 114 MFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVHAREVASEQFRR 193 (386)
Q Consensus 114 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 193 (386)
...+||.+++|..+|+++..+ .. .+. ...+ =+|..++.. .
T Consensus 289 v~~Ydp~~~~W~~~~~m~~~r----------------~~--------~~~--v~~~-----~~iYviGG~---------~ 328 (480)
T PHA02790 289 AIAVNYISNNWIPIPPMNSPR----------------LY--------ASG--VPAN-----NKLYVVGGL---------P 328 (480)
T ss_pred EEEEECCCCEEEECCCCCchh----------------hc--------ceE--EEEC-----CEEEEECCc---------C
Confidence 677899999999999988764 11 111 1111 234444331 1
Q ss_pred ccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTD 273 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 273 (386)
....++.|+..+++|..++ .+|.. ......+.++|.+|.+++. ... ...+.+||+.+++|+.++.++..
T Consensus 329 ~~~sve~ydp~~n~W~~~~-~l~~~--r~~~~~~~~~g~IYviGG~-~~~---~~~ve~ydp~~~~W~~~~~m~~~---- 397 (480)
T PHA02790 329 NPTSVERWFHGDAAWVNMP-SLLKP--RCNPAVASINNVIYVIGGH-SET---DTTTEYLLPNHDQWQFGPSTYYP---- 397 (480)
T ss_pred CCCceEEEECCCCeEEECC-CCCCC--CcccEEEEECCEEEEecCc-CCC---CccEEEEeCCCCEEEeCCCCCCc----
Confidence 1245899999999999998 66543 3445678999999999876 321 14688999999999998433222
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecC--
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDD-- 351 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~-- 351 (386)
......++.+|+|+++++. .+++-.+ ...|+....++..... ..+++ -+|+||+..+.
T Consensus 398 --r~~~~~~~~~~~IYv~GG~-----------~e~ydp~----~~~W~~~~~m~~~r~~--~~~~v-~~~~IYviGG~~~ 457 (480)
T PHA02790 398 --HYKSCALVFGRRLFLVGRN-----------AEFYCES----SNTWTLIDDPIYPRDN--PELII-VDNKLLLIGGFYR 457 (480)
T ss_pred --cccceEEEECCEEEEECCc-----------eEEecCC----CCcEeEcCCCCCCccc--cEEEE-ECCEEEEECCcCC
Confidence 1234567899999999852 2233222 3689987655432211 22222 35678876431
Q ss_pred ----CeEEEEECCCCeEEE
Q 048458 352 ----GELVLYDHKTQEVVQ 366 (386)
Q Consensus 352 ----~~l~~ydl~~~~~~~ 366 (386)
..+-.||+++++|+.
T Consensus 458 ~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 458 GSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred CcccceEEEEECCCCeEEe
Confidence 248899999999974
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.81 E-value=1.6e-06 Score=82.92 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=99.0
Q ss_pred ceEEEEEcCCCceeecCCCCCCccccCCCceE-EECCeEEEEEEeecCCC------------------------------
Q 048458 196 SDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTV-HLNGAVHWMAIRKESDG------------------------------ 244 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v-~~~G~lywl~~~~~~~~------------------------------ 244 (386)
..++.|+..+++|+.++..+|.. ......+ .++|++|.+++. ....
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~--~~~~~~~~~~~g~IYviGG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVG--LLGASGFSLHNGQAYFTGGV-NKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP 161 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCc--ccceeEEEEeCCEEEEEcCc-ChHHHHHHHhhHhhcCccchhhhhhHHHHhCCCh
Confidence 46899999999999987212221 2222234 689999999875 2100
Q ss_pred ---CCceEEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcce
Q 048458 245 ---TNKDIIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHW 320 (386)
Q Consensus 245 ---~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W 320 (386)
.....+.+||+.+++|+.+ ++|... .....++..+|+|+++.+.... +....++|..+-......|
T Consensus 162 ~~~~~~~~v~~YDp~t~~W~~~~~~p~~~------r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 162 EDYFWNKNVLSYDPSTNQWRNLGENPFLG------TAGSAIVHKGNKLLLINGEIKP----GLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred hHcCccceEEEEECCCCceeECccCCCCc------CCCceEEEECCEEEEEeeeeCC----CccchheEEEEecCCCcee
Confidence 0015799999999999998 555322 2345667889999999986431 1233455655411123579
Q ss_pred EEEEEeecCCC---ce-eEEEEEecCCeEEEEecC-----------------------CeEEEEECCCCeEEEeee
Q 048458 321 INLFTVDLRAQ---FA-WQYLGFGANDEVMLRNDD-----------------------GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 321 ~~~~~i~~~~~---~~-~~~~~~~~~g~i~l~~~~-----------------------~~l~~ydl~~~~~~~v~~ 369 (386)
+++..++.... .. ....++.-+++||+.... ..+-.||+++++|+.+.-
T Consensus 232 ~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 232 NKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK 307 (346)
T ss_pred eecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC
Confidence 98876654211 11 011123345677775431 136799999999988753
No 13
>PLN02193 nitrile-specifier protein
Probab=98.81 E-value=7e-07 Score=88.79 Aligned_cols=160 Identities=9% Similarity=0.108 Sum_probs=101.3
Q ss_pred cceEEEEEcCCCceeecCCCCCC-ccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPC-IPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTD 273 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~-~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 273 (386)
...+++|++.+++|+.+. .+.. ......+..+.+++.+|.++.. ... .....+.+||+.+.+|+.++.|......
T Consensus 243 ~ndv~~yD~~t~~W~~l~-~~~~~P~~R~~h~~~~~~~~iYv~GG~-~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~- 318 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLT-PVEEGPTPRSFHSMAADEENVYVFGGV-SAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSI- 318 (470)
T ss_pred CccEEEEECCCCEEEEcC-cCCCCCCCccceEEEEECCEEEEECCC-CCC-CCcceEEEEECCCCEEEeCCCCCCCCCC-
Confidence 356899999999999987 3321 1123345567889999999875 321 1225689999999999988655332111
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCC-CceeEEEEEecCCeEEEEecC-
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRA-QFAWQYLGFGANDEVMLRNDD- 351 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~g~i~l~~~~- 351 (386)
.....++..+|+++++.+.... ..-++|+++- .+.+|+++..+.... ....... +.-++.|++....
T Consensus 319 --R~~~~~~~~~gkiyviGG~~g~------~~~dv~~yD~--~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 319 --RGGAGLEVVQGKVWVVYGFNGC------EVDDVHYYDP--VQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred --CCCcEEEEECCcEEEEECCCCC------ccCceEEEEC--CCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 2334567789999999875431 2345777774 246799886552211 1111122 2224566664321
Q ss_pred --------------CeEEEEECCCCeEEEeee
Q 048458 352 --------------GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 352 --------------~~l~~ydl~~~~~~~v~~ 369 (386)
..++.||+++++|+.+..
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred CCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 138999999999998853
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.79 E-value=1.3e-06 Score=82.66 Aligned_cols=155 Identities=11% Similarity=0.107 Sum_probs=99.7
Q ss_pred cceEEEEEcCCCce----eecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeec-CCCCC
Q 048458 195 FSDIQVYSLKNNCW----RRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRK-LPDCL 269 (386)
Q Consensus 195 ~~~~~vyss~~~~W----~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~ 269 (386)
...++.|+..++.| +.++ .+|.. ......+.++|.+|.+++. .. ......+.+||+.+++|+.++ +|...
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~-~lp~~--~~~~~~~~~~~~iYv~GG~-~~-~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIG-NLPFT--FENGSACYKDGTLYVGGGN-RN-GKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcC-CCCcC--ccCceEEEECCEEEEEeCc-CC-CccCceEEEEcCCCCCeeECCCCCCCC
Confidence 45788999999887 5566 55544 3345678899999999875 22 122357999999999999984 66432
Q ss_pred CCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCC-Cce--eEEEEEecCCeEE
Q 048458 270 YNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRA-QFA--WQYLGFGANDEVM 346 (386)
Q Consensus 270 ~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~-~~~--~~~~~~~~~g~i~ 346 (386)
. .....+..+|+|+++++.... ...++++.+- ...+|+++..+.... ... ....++..++.||
T Consensus 162 r------~~~~~~~~~~~iYv~GG~~~~------~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 162 R------VQPVCVKLQNELYVFGGGSNI------AYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred C------CcceEEEECCEEEEEcCCCCc------cccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 1 233457889999999886431 2345666663 236799876543111 100 0111222345666
Q ss_pred EEec--------------------------------------CCeEEEEECCCCeEEEee
Q 048458 347 LRND--------------------------------------DGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 347 l~~~--------------------------------------~~~l~~ydl~~~~~~~v~ 368 (386)
+... ...+..||+++++|+.+.
T Consensus 228 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 228 CIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred EECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 6432 135999999999999886
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.74 E-value=1.7e-09 Score=71.35 Aligned_cols=42 Identities=24% Similarity=0.484 Sum_probs=36.4
Q ss_pred CCCCcHHHHHHHHccCCccccceeeeccccccccccChhhHH
Q 048458 2 SKSLPAKFMLETLLKLPVKTLTRFKCVSKQWHSVISNPTFVA 43 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP~~sl~r~~~VcK~W~~liss~~F~~ 43 (386)
+..||+|++.+||..||++++.+++.|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875443
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.67 E-value=2.6e-06 Score=82.34 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=99.5
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEE-ECCeEEEEEEeecCCC-----------------------------
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVH-LNGAVHWMAIRKESDG----------------------------- 244 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~-~~G~lywl~~~~~~~~----------------------------- 244 (386)
...+++|+..+++|+.++...|.. ...+..+. .+|.||.+++. ....
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~--~~~~~~~~~~~~~IYv~GG~-~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVG--LAGHVAVSLHNGKAYITGGV-NKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCc--ccceEEEEeeCCEEEEECCC-CHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 356899999999999987212222 22233444 79999999875 2100
Q ss_pred ----CCceEEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcc
Q 048458 245 ----TNKDIIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEH 319 (386)
Q Consensus 245 ----~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~ 319 (386)
.....+.+||+.+++|+.+ ++|... ......+..+++|+++++... .+....++|..+-+....+
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~------~~~~a~v~~~~~iYv~GG~~~----~~~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLG------TAGSAVVIKGNKLWLINGEIK----PGLRTDAVKQGKFTGNNLK 251 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCC------CCcceEEEECCEEEEEeeeEC----CCcCChhheEEEecCCCcc
Confidence 0014699999999999988 455322 123456778999999998543 1224566776542123468
Q ss_pred eEEEEEeecCCC----cee-EEEEEecCCeEEEEecCC-----------------------eEEEEECCCCeEEEeee
Q 048458 320 WINLFTVDLRAQ----FAW-QYLGFGANDEVMLRNDDG-----------------------ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 320 W~~~~~i~~~~~----~~~-~~~~~~~~g~i~l~~~~~-----------------------~l~~ydl~~~~~~~v~~ 369 (386)
|+++..++.... ... ...++.-+++||+..... .+-.||+++++|+.+.-
T Consensus 252 W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 329 (376)
T PRK14131 252 WQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE 329 (376)
T ss_pred eeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc
Confidence 998876654321 111 122233356677653210 14579999999987754
No 17
>PHA03098 kelch-like protein; Provisional
Probab=98.63 E-value=2e-06 Score=87.12 Aligned_cols=153 Identities=9% Similarity=0.084 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCCCCC
Q 048458 196 SDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYNTDH 274 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~ 274 (386)
..++.|+..++.|..++ .++.. ......+.++|.+|.+++. .. ......+..||+.+.+|+.+ ++|...
T Consensus 311 ~~v~~yd~~~~~W~~~~-~~~~~--R~~~~~~~~~~~lyv~GG~-~~-~~~~~~v~~yd~~~~~W~~~~~lp~~r----- 380 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVP-ELIYP--RKNPGVTVFNNRIYVIGGI-YN-SISLNTVESWKPGESKWREEPPLIFPR----- 380 (534)
T ss_pred ccEEEEeCCCCeeeECC-CCCcc--cccceEEEECCEEEEEeCC-CC-CEecceEEEEcCCCCceeeCCCcCcCC-----
Confidence 46899999999999888 56543 3345678899999999876 32 22235689999999999987 455432
Q ss_pred ccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecC---
Q 048458 275 IHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDD--- 351 (386)
Q Consensus 275 ~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~--- 351 (386)
.....+..+|+++++++.... +...-.+++.+- .+.+|+....++.... ..-++..++.||+..+.
T Consensus 381 --~~~~~~~~~~~iYv~GG~~~~----~~~~~~v~~yd~--~t~~W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 381 --YNPCVVNVNNLIYVIGGISKN----DELLKTVECFSL--NTNKWSKGSPLPISHY---GGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred --ccceEEEECCEEEEECCcCCC----CcccceEEEEeC--CCCeeeecCCCCcccc---CceEEEECCEEEEECCccCC
Confidence 233457789999999885431 111223455552 2367998765443221 11223335677775421
Q ss_pred ------CeEEEEECCCCeEEEeee
Q 048458 352 ------GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 352 ------~~l~~ydl~~~~~~~v~~ 369 (386)
..+..||+++++|+.+.-
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCC
Confidence 239999999999998853
No 18
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.59 E-value=5.1e-09 Score=69.41 Aligned_cols=45 Identities=31% Similarity=0.472 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHccCCccccceeeeccccccccccChhhHHHHh
Q 048458 2 SKSLPAKFMLETLLKLPVKTLTRFKCVSKQWHSVISNPTFVALHA 46 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP~~sl~r~~~VcK~W~~liss~~F~~~~~ 46 (386)
+.+||+|++.+||.+|+++++.+++.|||+|+.++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 357999999999999999999999999999999999998876553
No 19
>PLN02153 epithiospecifier protein
Probab=98.56 E-value=1.2e-05 Score=76.68 Aligned_cols=165 Identities=10% Similarity=0.107 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCceeecCCCCCCccc--cCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeec-CCCCCCCC
Q 048458 196 SDIQVYSLKNNCWRRIQPNVPCIPC--LSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRK-LPDCLYNT 272 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~~p~~~~--~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~ 272 (386)
..+++|+..++.|+.++ .++.... ......+.+++.||.+++. .... .-..+.+||+.+.+|+.++ ++......
T Consensus 50 ~~~~~yd~~~~~W~~~~-~~~~~p~~~~~~~~~~~~~~~iyv~GG~-~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~ 126 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAP-ANGDVPRISCLGVRMVAVGTKLYIFGGR-DEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPE 126 (341)
T ss_pred CcEEEEECCCCEEEEcC-ccCCCCCCccCceEEEEECCEEEEECCC-CCCC-ccCcEEEEECCCCEEEEeccCCCCCCCC
Confidence 46899999999999877 3221111 1234468899999999875 3221 1246899999999999874 31100000
Q ss_pred CCccceeEEEEeCCeEEEEEeeCCCCCCCCC-CEEEEEEEeecCCCcceEEEEEeecC-CCceeEEEEEecCCeEEEEec
Q 048458 273 DHIHRERSIGILEKSIALFVSCHTEDNTAGL-GICSVYVMKENIEVEHWINLFTVDLR-AQFAWQYLGFGANDEVMLRND 350 (386)
Q Consensus 273 ~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~-~~i~iW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~g~i~l~~~ 350 (386)
. ......+..+++|+++++.......... ..-++++.+- ...+|+.+...... .......+++ -+++|++...
T Consensus 127 ~--R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG 201 (341)
T PLN02153 127 A--RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI--ADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYG 201 (341)
T ss_pred C--ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC--CCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEec
Confidence 0 1233557789999999886531000000 1124566553 23679976543211 1111012222 2455665321
Q ss_pred --------------CCeEEEEECCCCeEEEee
Q 048458 351 --------------DGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 351 --------------~~~l~~ydl~~~~~~~v~ 368 (386)
...+..||+++++|+++.
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred cccccccCCccceecCceEEEEcCCCcEEecc
Confidence 134999999999999985
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.54 E-value=4.8e-06 Score=83.05 Aligned_cols=144 Identities=7% Similarity=-0.038 Sum_probs=95.2
Q ss_pred eEEeeecccEEEeecCCCCccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeec
Q 048458 91 QIVSSCSGLVCLLLNTFHSCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDH 170 (386)
Q Consensus 91 ~~~~s~~GLl~~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~ 170 (386)
.-.++.+|-|.+.+.... ...+..++|.+.+|..+|+++..+ .. .+ ...++
T Consensus 312 ~~~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r----------------~~--------~~--~~~~~- 362 (480)
T PHA02790 312 ASGVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPR----------------CN--------PA--VASIN- 362 (480)
T ss_pred ceEEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCC----------------cc--------cE--EEEEC-
Confidence 344567888866522211 122678899999999999988664 11 11 11111
Q ss_pred CCCCeEEEEEEEeeeccccccccccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEE
Q 048458 171 RTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDII 250 (386)
Q Consensus 171 ~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~i 250 (386)
=+|..++... .....++.|+.+++.|..++ .++.. ......+.++|.+|.+++ ..
T Consensus 363 ----g~IYviGG~~--------~~~~~ve~ydp~~~~W~~~~-~m~~~--r~~~~~~~~~~~IYv~GG----------~~ 417 (480)
T PHA02790 363 ----NVIYVIGGHS--------ETDTTTEYLLPNHDQWQFGP-STYYP--HYKSCALVFGRRLFLVGR----------NA 417 (480)
T ss_pred ----CEEEEecCcC--------CCCccEEEEeCCCCEEEeCC-CCCCc--cccceEEEECCEEEEECC----------ce
Confidence 2344433311 11246899999999999988 55543 333456789999999863 35
Q ss_pred EEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeC
Q 048458 251 VSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCH 295 (386)
Q Consensus 251 l~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~ 295 (386)
.+||+.+++|+.+ ++|.. .....+++.+|+|+++++..
T Consensus 418 e~ydp~~~~W~~~~~m~~~-------r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYP-------RDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred EEecCCCCcEeEcCCCCCC-------ccccEEEEECCEEEEECCcC
Confidence 6899999999988 44432 24557789999999999865
No 21
>PLN02193 nitrile-specifier protein
Probab=98.51 E-value=2e-05 Score=78.47 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCceeecCCC--CCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeec-C---CCCC
Q 048458 196 SDIQVYSLKNNCWRRIQPN--VPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRK-L---PDCL 269 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~--~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~-~---P~~~ 269 (386)
..+++|+.++++|..++.. .|.. .......+.+++.||.++.. ... ..-..+.+||+.+.+|+.++ + |..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~~~~~lYvfGG~-~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~- 268 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHL-SCLGVRMVSIGSTLYVFGGR-DAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTP- 268 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCC-cccceEEEEECCEEEEECCC-CCC-CCCccEEEEECCCCEEEEcCcCCCCCCC-
Confidence 4699999999999977621 2211 11233467899999998875 321 12256899999999999883 3 221
Q ss_pred CCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecC-CCceeEEEEEecCCeEEEE
Q 048458 270 YNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLR-AQFAWQYLGFGANDEVMLR 348 (386)
Q Consensus 270 ~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~g~i~l~ 348 (386)
......+..+++|+++.+.... ...-++++++- ...+|+........ .......+++. +++|++.
T Consensus 269 ------R~~h~~~~~~~~iYv~GG~~~~-----~~~~~~~~yd~--~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyvi 334 (470)
T PLN02193 269 ------RSFHSMAADEENVYVFGGVSAT-----ARLKTLDSYNI--VDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVV 334 (470)
T ss_pred ------ccceEEEEECCEEEEECCCCCC-----CCcceEEEEEC--CCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEE
Confidence 1233456789999999886531 11234555553 23679875432111 11111222222 4566665
Q ss_pred ec-----CCeEEEEECCCCeEEEee
Q 048458 349 ND-----DGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 349 ~~-----~~~l~~ydl~~~~~~~v~ 368 (386)
.. ...+..||+++++|+.+.
T Consensus 335 GG~~g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 335 YGFNGCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred ECCCCCccCceEEEECCCCEEEEec
Confidence 32 135999999999999885
No 22
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.48 E-value=1.5e-08 Score=64.57 Aligned_cols=39 Identities=41% Similarity=0.675 Sum_probs=36.7
Q ss_pred CcHHHHHHHHccCCccccceeeeccccccccccChhhHH
Q 048458 5 LPAKFMLETLLKLPVKTLTRFKCVSKQWHSVISNPTFVA 43 (386)
Q Consensus 5 LP~dll~~IL~rLP~~sl~r~~~VcK~W~~liss~~F~~ 43 (386)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987754
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.19 E-value=0.00041 Score=67.11 Aligned_cols=162 Identities=10% Similarity=0.128 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCC-CCCceEEEEEECCCceeeee-cCCCCCCCCC
Q 048458 196 SDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESD-GTNKDIIVSFDFGDETFRYR-KLPDCLYNTD 273 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~ 273 (386)
..+++|+..++.|+.++ .+|... ......+.++|.||.+++....+ .........||+++.+|..+ ++|.......
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~ 266 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSS 266 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCc
Confidence 56899999999999988 565422 22344677899999999762211 11122345678889999987 5654321110
Q ss_pred C-ccceeEEEEeCCeEEEEEeeCCCCC--------------CCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEE
Q 048458 274 H-IHRERSIGILEKSIALFVSCHTEDN--------------TAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLG 338 (386)
Q Consensus 274 ~-~~~~~~L~~~~G~L~lv~~~~~~~~--------------~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 338 (386)
+ .......+..+|+|+++++...... .......+++..+ ...|+....++... .+. .+
T Consensus 267 ~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~~r--~~~-~a 339 (376)
T PRK14131 267 QEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV----NGKWQKVGELPQGL--AYG-VS 339 (376)
T ss_pred CCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec----CCcccccCcCCCCc--cce-EE
Confidence 0 0112234678999999988643100 0000123344444 35799876554322 112 23
Q ss_pred EecCCeEEEEecC-------CeEEEEECCCCeEEE
Q 048458 339 FGANDEVMLRNDD-------GELVLYDHKTQEVVQ 366 (386)
Q Consensus 339 ~~~~g~i~l~~~~-------~~l~~ydl~~~~~~~ 366 (386)
+.-+++||+.... ..+..|+++++++..
T Consensus 340 v~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 340 VSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 3345677775431 248889988887754
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.17 E-value=0.00039 Score=66.42 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEE--ECCCceeeee-cCCCCCCCC
Q 048458 196 SDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSF--DFGDETFRYR-KLPDCLYNT 272 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~f--D~~~~~~~~i-~~P~~~~~~ 272 (386)
..+++|+..+++|+.++ .+|... ......+.++|+||.+++. .........+..| |+++.+|+.+ ++|......
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~-r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~ 244 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLG-TAGSAIVHKGNKLLLINGE-IKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS 244 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCc-CCCceEEEECCEEEEEeee-eCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence 57999999999999998 665421 2334467889999999876 3221111234444 4567799887 555432100
Q ss_pred CCccceeEEEEeCCeEEEEEeeCCCCC--------------CCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEE
Q 048458 273 DHIHRERSIGILEKSIALFVSCHTEDN--------------TAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLG 338 (386)
Q Consensus 273 ~~~~~~~~L~~~~G~L~lv~~~~~~~~--------------~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 338 (386)
.........++++|+|+++++...... ......+++|..+. .+|+.+..++... . ...+
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~~--~-~~~~ 317 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN----GKWSKVGKLPQGL--A-YGVS 317 (346)
T ss_pred cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC----CcccccCCCCCCc--e-eeEE
Confidence 000112336778999999988642100 00012456676653 5799887665432 1 1223
Q ss_pred EecCCeEEEEec
Q 048458 339 FGANDEVMLRND 350 (386)
Q Consensus 339 ~~~~g~i~l~~~ 350 (386)
+.-++.|++...
T Consensus 318 ~~~~~~iyv~GG 329 (346)
T TIGR03547 318 VSWNNGVLLIGG 329 (346)
T ss_pred EEcCCEEEEEec
Confidence 333567777643
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.12 E-value=0.00016 Score=68.40 Aligned_cols=151 Identities=11% Similarity=0.128 Sum_probs=93.9
Q ss_pred eEEEEEcCC--CceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCcee----eee-cCCCCC
Q 048458 197 DIQVYSLKN--NCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETF----RYR-KLPDCL 269 (386)
Q Consensus 197 ~~~vyss~~--~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~----~~i-~~P~~~ 269 (386)
.+.+|+... ..|..+. .+|.. ......+.+++.+|.+++. .. ......+..||+.+.+| ..+ ++|...
T Consensus 40 ~v~~~~~~~~~~~W~~~~-~lp~~--r~~~~~~~~~~~lyviGG~-~~-~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~ 114 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDG-QLPYE--AAYGASVSVENGIYYIGGS-NS-SERFSSVYRITLDESKEELICETIGNLPFTF 114 (323)
T ss_pred eeEEEecCCCceeEEEcc-cCCcc--ccceEEEEECCEEEEEcCC-CC-CCCceeEEEEEEcCCceeeeeeEcCCCCcCc
Confidence 345555222 2698888 66654 2334578889999999876 32 12235789999999888 333 444432
Q ss_pred CCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEe
Q 048458 270 YNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRN 349 (386)
Q Consensus 270 ~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~ 349 (386)
.....++.+|+|+++.+.... ...-++|+++- ...+|+++..++..... ...++.-++.||+..
T Consensus 115 -------~~~~~~~~~~~iYv~GG~~~~-----~~~~~v~~yd~--~~~~W~~~~~~p~~~r~--~~~~~~~~~~iYv~G 178 (323)
T TIGR03548 115 -------ENGSACYKDGTLYVGGGNRNG-----KPSNKSYLFNL--ETQEWFELPDFPGEPRV--QPVCVKLQNELYVFG 178 (323)
T ss_pred -------cCceEEEECCEEEEEeCcCCC-----ccCceEEEEcC--CCCCeeECCCCCCCCCC--cceEEEECCEEEEEc
Confidence 234557789999999885431 12235677763 24679987655432211 233333456777764
Q ss_pred cC-----CeEEEEECCCCeEEEee
Q 048458 350 DD-----GELVLYDHKTQEVVQCE 368 (386)
Q Consensus 350 ~~-----~~l~~ydl~~~~~~~v~ 368 (386)
.. ..+..||+++++|+.+.
T Consensus 179 G~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 179 GGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCCCccccceEEEecCCCeeEECC
Confidence 31 23789999999999885
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.55 E-value=0.0018 Score=59.46 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=38.7
Q ss_pred CCCCc----HHHHHHHHccCCccccceeeeccccccccccChhhHHH
Q 048458 2 SKSLP----AKFMLETLLKLPVKTLTRFKCVSKQWHSVISNPTFVAL 44 (386)
Q Consensus 2 ~~~LP----~dll~~IL~rLP~~sl~r~~~VcK~W~~liss~~F~~~ 44 (386)
+..|| +++.+.||+.|...+|..|..|||+|+++++++..-+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 35789 99999999999999999999999999999999865553
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.45 E-value=0.003 Score=56.13 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=100.2
Q ss_pred cccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecC-CCCCceEEEEEECCCceeeeec---CCCC
Q 048458 193 REFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKES-DGTNKDIIVSFDFGDETFRYRK---LPDC 268 (386)
Q Consensus 193 ~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~~~il~fD~~~~~~~~i~---~P~~ 268 (386)
......+-|+.+++.|+.....-........++++..++.+|-.++. ++ .+.-...+.++|+++.+|+.+. .|+.
T Consensus 102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGy-e~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Ppr 180 (392)
T KOG4693|consen 102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGY-EEDAQRFSQDTHVLDFATMTWREMHTKGDPPR 180 (392)
T ss_pred cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecCh-HHHHHhhhccceeEeccceeeeehhccCCCch
Confidence 34556788999999998776211111123446678889999988876 32 2223357999999999999984 3443
Q ss_pred CCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCC----CCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe
Q 048458 269 LYNTDHIHRERSIGILEKSIALFVSCHTEDNTAG----LGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE 344 (386)
Q Consensus 269 ~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~----~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~ 344 (386)
-. ..-.-.+.+|+.+++++..++-++-. ..--.|=.|+- ..+.|.....-.......-+.-.+.-||+
T Consensus 181 wR------DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng~ 252 (392)
T KOG4693|consen 181 WR------DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNGK 252 (392)
T ss_pred hh------hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEcce
Confidence 22 11223456788888888765322111 01112333442 24678876332222211112223334677
Q ss_pred EEEEec--------CCeEEEEECCCCeEEEeee
Q 048458 345 VMLRND--------DGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 345 i~l~~~--------~~~l~~ydl~~~~~~~v~~ 369 (386)
+|+-.. ...|+.||++|..|..|..
T Consensus 253 ~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 253 MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred EEEecccchhhhhhhcceeecccccchheeeec
Confidence 776432 1349999999999999987
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.39 E-value=0.012 Score=55.48 Aligned_cols=171 Identities=11% Similarity=0.175 Sum_probs=99.8
Q ss_pred ccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCC--CceEEEEEECCCceeeeecCCCCCCC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGT--NKDIIVSFDFGDETFRYRKLPDCLYN 271 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~--~~~~il~fD~~~~~~~~i~~P~~~~~ 271 (386)
.-...++|++.++.|..+. ..-.......+..|.....|.-.++-++.... .-..+.+||+++-+|+.+..+.....
T Consensus 152 HYkD~W~fd~~trkweql~-~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt 230 (521)
T KOG1230|consen 152 HYKDLWLFDLKTRKWEQLE-FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT 230 (521)
T ss_pred hhhheeeeeeccchheeec-cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC
Confidence 3456899999999999887 21111223334455555555444433122111 11468999999999999966543222
Q ss_pred CCCccceeEEEEe-CCeEEEEEeeCCC----CCCCCCCEEEEEEEee-cC--CCcceEEEEEeecCC--CceeEEEEEec
Q 048458 272 TDHIHRERSIGIL-EKSIALFVSCHTE----DNTAGLGICSVYVMKE-NI--EVEHWINLFTVDLRA--QFAWQYLGFGA 341 (386)
Q Consensus 272 ~~~~~~~~~L~~~-~G~L~lv~~~~~~----~~~~~~~~i~iW~l~~-~~--~~~~W~~~~~i~~~~--~~~~~~~~~~~ 341 (386)
. .....+.+. +|.+++.++.... +--.+..+-+.|.|+- .+ .+-.|+++..+.+.. ..+ .-+++++
T Consensus 231 p---RSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg-fsv~va~ 306 (521)
T KOG1230|consen 231 P---RSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG-FSVAVAK 306 (521)
T ss_pred C---CCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc-eeEEEec
Confidence 1 233444455 8888888765332 2234556678999973 22 123577766555444 222 3455666
Q ss_pred CCe-EEEE--ec------------CCeEEEEECCCCeEEEeee
Q 048458 342 NDE-VMLR--ND------------DGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 342 ~g~-i~l~--~~------------~~~l~~ydl~~~~~~~v~~ 369 (386)
++. ++|- .+ ...|++||+..++|....+
T Consensus 307 n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 307 NHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 653 4441 11 1249999999999976655
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.19 E-value=0.024 Score=56.65 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred eEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCcc
Q 048458 197 DIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIH 276 (386)
Q Consensus 197 ~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~ 276 (386)
.+++++..+..|......-........+..+.++..||..++. .........+.+||+.+.+|..+..-...... .
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~-~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~---r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGT-DKKYRNLNELHSLDLSTRTWSLLSPTGDPPPP---R 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccc-cCCCCChhheEeccCCCCcEEEecCcCCCCCC---c
Confidence 5889999999997665222122224455678899999999887 43223345899999999999998322221000 2
Q ss_pred ceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCcee-EEEEEecCCeEEEEecC----
Q 048458 277 RERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAW-QYLGFGANDEVMLRNDD---- 351 (386)
Q Consensus 277 ~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~i~l~~~~---- 351 (386)
..-.++..+.+|.+.++.... ....-++|+++- ....|.+..+........+ ..+++.++.-+++...+
T Consensus 165 ~~Hs~~~~g~~l~vfGG~~~~----~~~~ndl~i~d~--~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~ 238 (482)
T KOG0379|consen 165 AGHSATVVGTKLVVFGGIGGT----GDSLNDLHIYDL--ETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDV 238 (482)
T ss_pred ccceEEEECCEEEEECCccCc----ccceeeeeeecc--ccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCc
Confidence 334556777899999887662 224668888884 2356999887765543222 34444444333333221
Q ss_pred --CeEEEEECCCCeEEEeee
Q 048458 352 --GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 352 --~~l~~ydl~~~~~~~v~~ 369 (386)
..++.+|+.+.+|+.+..
T Consensus 239 ~l~D~~~ldl~~~~W~~~~~ 258 (482)
T KOG0379|consen 239 YLNDVHILDLSTWEWKLLPT 258 (482)
T ss_pred eecceEeeecccceeeeccc
Confidence 249999999999986654
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00012 Score=66.22 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHHccCCccccceeeeccccccccccChh
Q 048458 2 SKSLPAKFMLETLLKLPVKTLTRFKCVSKQWHSVISNPT 40 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP~~sl~r~~~VcK~W~~liss~~ 40 (386)
+..||||+++.||+.|+.|+|.++..|||+|.++.++..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 468999999999999999999999999999999987654
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.75 E-value=0.044 Score=54.77 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=102.1
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDH 274 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~ 274 (386)
...++.|+..++.|+...+.-..+.....++.+..+.++|..++. +.....-..+.+||+.+.+|..+.........
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~-~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p-- 214 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGI-GGTGDSLNDLHIYDLETSTWSELDTQGEAPSP-- 214 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCc-cCcccceeeeeeeccccccceecccCCCCCCC--
Confidence 457899999999999887211112234556677788888888766 43332347899999999999998544333211
Q ss_pred ccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEee-cCCCceeEEEEEecCCeEEEEe----
Q 048458 275 IHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVD-LRAQFAWQYLGFGANDEVMLRN---- 349 (386)
Q Consensus 275 ~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~g~i~l~~---- 349 (386)
...-..+..+++++++.+... .+...=++|.|+=. ..+|.++-... ......+....+.++.-+++..
T Consensus 215 -R~gH~~~~~~~~~~v~gG~~~----~~~~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 215 -RYGHAMVVVGNKLLVFGGGDD----GDVYLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP 287 (482)
T ss_pred -CCCceEEEECCeEEEEecccc----CCceecceEeeecc--cceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccc
Confidence 233456777899998887542 12345588999842 25677443322 2222222333344333333321
Q ss_pred ---cCCeEEEEECCCCeEEEeee
Q 048458 350 ---DDGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 350 ---~~~~l~~ydl~~~~~~~v~~ 369 (386)
..+.++.||++++.|.++..
T Consensus 288 ~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 288 KQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred ccccccccccccccccceeeeec
Confidence 12358999999999988865
No 32
>PF13964 Kelch_6: Kelch motif
Probab=95.89 E-value=0.021 Score=37.59 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=33.5
Q ss_pred CCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCC
Q 048458 223 SNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLP 266 (386)
Q Consensus 223 ~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P 266 (386)
..+.|.++|.||.+++. .........+..||+++++|+.+ ++|
T Consensus 4 ~~s~v~~~~~iyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGY-DNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred cCEEEEECCEEEEECCC-CCCCCccccEEEEcCCCCcEEECCCCC
Confidence 34578999999999987 43223347899999999999998 444
No 33
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.85 E-value=0.084 Score=47.22 Aligned_cols=162 Identities=12% Similarity=0.168 Sum_probs=97.4
Q ss_pred ccccceEEEEEcCCCceeecCCCC-------CCcc---ccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceee
Q 048458 192 RREFSDIQVYSLKNNCWRRIQPNV-------PCIP---CLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFR 261 (386)
Q Consensus 192 ~~~~~~~~vyss~~~~W~~~~~~~-------p~~~---~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~ 261 (386)
......++++.-.+-.|..+++.+ +... ....+..|..++++|-.++. ......-..+.+||+++.+|.
T Consensus 40 ~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGR-ND~egaCN~Ly~fDp~t~~W~ 118 (392)
T KOG4693|consen 40 AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGR-NDDEGACNLLYEFDPETNVWK 118 (392)
T ss_pred cCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCc-cCcccccceeeeecccccccc
Confidence 466788999999999998877321 1111 13345678889998887766 322222357899999999998
Q ss_pred eec----CCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCC-ceeEE
Q 048458 262 YRK----LPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQ-FAWQY 336 (386)
Q Consensus 262 ~i~----~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~ 336 (386)
..+ +|.... .-.-++.+...+++++..+. ...-.-++.+|+- ....|.++++-..+.. .+|..
T Consensus 119 ~p~v~G~vPgaRD-------GHsAcV~gn~MyiFGGye~~---a~~FS~d~h~ld~--~TmtWr~~~Tkg~PprwRDFH~ 186 (392)
T KOG4693|consen 119 KPEVEGFVPGARD-------GHSACVWGNQMYIFGGYEED---AQRFSQDTHVLDF--ATMTWREMHTKGDPPRWRDFHT 186 (392)
T ss_pred ccceeeecCCccC-------CceeeEECcEEEEecChHHH---HHhhhccceeEec--cceeeeehhccCCCchhhhhhh
Confidence 764 344332 22346778888888876542 1112345666663 2467998887655441 11100
Q ss_pred EEEecCCeEEE-----------Ee----cCCeEEEEECCCCeEEEe
Q 048458 337 LGFGANDEVML-----------RN----DDGELVLYDHKTQEVVQC 367 (386)
Q Consensus 337 ~~~~~~g~i~l-----------~~----~~~~l~~ydl~~~~~~~v 367 (386)
+..-++.+|+ .+ ....++++|++|+-|...
T Consensus 187 -a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 187 -ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred -hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence 0000122222 11 124599999999999664
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.62 E-value=0.66 Score=44.24 Aligned_cols=162 Identities=13% Similarity=0.187 Sum_probs=96.2
Q ss_pred eEEEEEcCCCceeecCCCCCCccccCCCceEEEC-CeEEEEEEeecCCCC------CceEEEEEECCCceeeeecCCCCC
Q 048458 197 DIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLN-GAVHWMAIRKESDGT------NKDIIVSFDFGDETFRYRKLPDCL 269 (386)
Q Consensus 197 ~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~-G~lywl~~~~~~~~~------~~~~il~fD~~~~~~~~i~~P~~~ 269 (386)
.+++|+-+.+.|+.+. ......+...+..|.+- |.+|..++. ..+- .=..+-.||+.+.+|..+.++.+.
T Consensus 99 dLy~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGE--faSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGE--FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEeccc--cCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 4678999999999887 33222334445556555 644444443 2111 113588999999999999887654
Q ss_pred CCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCC--CceeEEEEEecCCeEEE
Q 048458 270 YNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRA--QFAWQYLGFGANDEVML 347 (386)
Q Consensus 270 ~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~--~~~~~~~~~~~~g~i~l 347 (386)
.. ...-+++....+|.++++-++. ...-..--+||..+= ....|.++..-.... ..+ .-+.+.++|.|++
T Consensus 176 S~----RSGHRMvawK~~lilFGGFhd~-nr~y~YyNDvy~FdL--dtykW~Klepsga~PtpRSG-cq~~vtpqg~i~v 247 (521)
T KOG1230|consen 176 SP----RSGHRMVAWKRQLILFGGFHDS-NRDYIYYNDVYAFDL--DTYKWSKLEPSGAGPTPRSG-CQFSVTPQGGIVV 247 (521)
T ss_pred CC----CccceeEEeeeeEEEEcceecC-CCceEEeeeeEEEec--cceeeeeccCCCCCCCCCCc-ceEEecCCCcEEE
Confidence 32 2344678889999999886653 112223346787763 136799986521111 122 4456666666666
Q ss_pred Eec---------------CCeEEEEECCCC---eEEEeee
Q 048458 348 RND---------------DGELVLYDHKTQ---EVVQCES 369 (386)
Q Consensus 348 ~~~---------------~~~l~~ydl~~~---~~~~v~~ 369 (386)
... ...++..+++++ +|++-.+
T Consensus 248 yGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv 287 (521)
T KOG1230|consen 248 YGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV 287 (521)
T ss_pred EcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec
Confidence 421 123888888872 3544443
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.45 E-value=0.055 Score=34.90 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=33.8
Q ss_pred CceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCC
Q 048458 224 NSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLP 266 (386)
Q Consensus 224 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P 266 (386)
...+.++|.+|.+++. .........+..||+.+.+|+.+ ++|
T Consensus 5 ~~~~~~~~~iyv~GG~-~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGY-DGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEB-ESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeee-cccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 4578999999999988 44344557899999999999988 444
No 36
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.34 E-value=0.0039 Score=56.81 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHccCC-----ccccceeeeccccccccccChhhHHHHhh
Q 048458 2 SKSLPAKFMLETLLKLP-----VKTLTRFKCVSKQWHSVISNPTFVALHAK 47 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP-----~~sl~r~~~VcK~W~~liss~~F~~~~~~ 47 (386)
+..||||+|.+||.++= ..+|.++.+|||.|+-...+|.|-...+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 35799999999998765 48999999999999999999998776544
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.19 E-value=7.2 Score=39.55 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHHHccCCccccceeeeccccccccccChhhHH
Q 048458 2 SKSLPAKFMLETLLKLPVKTLTRFKCVSKQWHSVISNPTFVA 43 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP~~sl~r~~~VcK~W~~liss~~F~~ 43 (386)
+..||.++...||..|+.+++++++.||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 467999999999999999999999999999999999776655
No 38
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.06 E-value=0.52 Score=38.03 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=58.3
Q ss_pred eEEEEEECCCc--eeeeecCCCCCCCCC-------CccceeEEEEeCCeEEEEEeeCCCCCC--CCCCEEEEEEEeec-C
Q 048458 248 DIIVSFDFGDE--TFRYRKLPDCLYNTD-------HIHRERSIGILEKSIALFVSCHTEDNT--AGLGICSVYVMKEN-I 315 (386)
Q Consensus 248 ~~il~fD~~~~--~~~~i~~P~~~~~~~-------~~~~~~~L~~~~G~L~lv~~~~~~~~~--~~~~~i~iW~l~~~-~ 315 (386)
.+|+..|+-.+ .++.+++|....... .......++..+|+|-+|......... ...-++..|+|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 56888999765 678889988654321 113455677889999998876553222 35678999999964 2
Q ss_pred CCcceEEEEEeecCC
Q 048458 316 EVEHWINLFTVDLRA 330 (386)
Q Consensus 316 ~~~~W~~~~~i~~~~ 330 (386)
...+|.+-++++...
T Consensus 86 ~~~~W~~d~~v~~~d 100 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSD 100 (131)
T ss_pred CCCCEEEeEEEEhhh
Confidence 357899999888655
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.95 E-value=0.19 Score=32.84 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.1
Q ss_pred CCceEEECCeEEEEEEe-ecCCCCCceEEEEEECCCceeeeecC
Q 048458 223 SNSTVHLNGAVHWMAIR-KESDGTNKDIIVSFDFGDETFRYRKL 265 (386)
Q Consensus 223 ~~~~v~~~G~lywl~~~-~~~~~~~~~~il~fD~~~~~~~~i~~ 265 (386)
.+..+.++|+||.+++. .+........+.+||+++.+|+.++.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 45678999999999876 12233455789999999999998854
No 40
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.82 E-value=4.7 Score=36.11 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=80.6
Q ss_pred eEEEEEcCCCceeecCCCCCC---ccccCCCceEEECCeEEEEEEeecCCCCCc--eEEEEEECCCceeeeecCCCCCCC
Q 048458 197 DIQVYSLKNNCWRRIQPNVPC---IPCLSSNSTVHLNGAVHWMAIRKESDGTNK--DIIVSFDFGDETFRYRKLPDCLYN 271 (386)
Q Consensus 197 ~~~vyss~~~~W~~~~~~~p~---~~~~~~~~~v~~~G~lywl~~~~~~~~~~~--~~il~fD~~~~~~~~i~~P~~~~~ 271 (386)
...+++..++.++.+. ..+. .....+.-.+--+|.+|.-... ....... +.|..+|.. .+.+.+. ....
T Consensus 61 ~~~~~d~~~g~~~~~~-~~~~~~~~~~~~ND~~vd~~G~ly~t~~~-~~~~~~~~~g~v~~~~~~-~~~~~~~--~~~~- 134 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLA-DLPDGGVPFNRPNDVAVDPDGNLYVTDSG-GGGASGIDPGSVYRIDPD-GKVTVVA--DGLG- 134 (246)
T ss_dssp CEEEEETTTTEEEEEE-EEETTCSCTEEEEEEEE-TTS-EEEEEEC-CBCTTCGGSEEEEEEETT-SEEEEEE--EEES-
T ss_pred ceEEEecCCCcEEEEe-eccCCCcccCCCceEEEcCCCCEEEEecC-CCccccccccceEEECCC-CeEEEEe--cCcc-
Confidence 3466688888887766 3321 1111122234457886665544 3222222 789999999 5544431 1111
Q ss_pred CCCccceeEEEE-eCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEe-ecCCCcee-EEEEEecCCeEEEE
Q 048458 272 TDHIHRERSIGI-LEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTV-DLRAQFAW-QYLGFGANDEVMLR 348 (386)
Q Consensus 272 ~~~~~~~~~L~~-~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i-~~~~~~~~-~~~~~~~~g~i~l~ 348 (386)
.--.|+. -+|+..++.-... .. ||+++-......+.....+ ........ .-++++.+|.|++.
T Consensus 135 -----~pNGi~~s~dg~~lyv~ds~~-------~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 135 -----FPNGIAFSPDGKTLYVADSFN-------GR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp -----SEEEEEEETTSSEEEEEETTT-------TE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred -----cccceEECCcchheeeccccc-------ce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence 1112222 2555444433332 34 6666532223346655433 33333222 56888888988887
Q ss_pred ec-CCeEEEEECCCCeEEEeeec
Q 048458 349 ND-DGELVLYDHKTQEVVQCESS 370 (386)
Q Consensus 349 ~~-~~~l~~ydl~~~~~~~v~~~ 370 (386)
.. .+++..||++.+....+..+
T Consensus 201 ~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 201 DWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EETTTEEEEEETTSCEEEEEE-S
T ss_pred EcCCCEEEEECCCccEEEEEcCC
Confidence 53 56899999998778888885
No 41
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.79 E-value=4.5 Score=35.72 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=67.9
Q ss_pred eEEEEEcCCC--cee-ecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCce--eeee-cCCCCCC
Q 048458 197 DIQVYSLKNN--CWR-RIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDET--FRYR-KLPDCLY 270 (386)
Q Consensus 197 ~~~vyss~~~--~W~-~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~--~~~i-~~P~~~~ 270 (386)
.+..++..++ .|+ ... ..+.............++.+|..... +.|.++|+.+.. |+.- ..|....
T Consensus 87 ~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLT-SSPPAGVRSSSSPAVDGDRLYVGTSS--------GKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTTSCEEEEEEE--SSCTCSTB--SEEEEETTEEEEEETC--------SEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred eeEecccCCcceeeeeccc-cccccccccccCceEecCEEEEEecc--------CcEEEEecCCCcEEEEeecCCCCCCc
Confidence 5666665554 688 343 21221112222334446666665544 799999988664 4332 3333211
Q ss_pred CC-CCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEe
Q 048458 271 NT-DHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRN 349 (386)
Q Consensus 271 ~~-~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~ 349 (386)
.. ........+...+|.+++..... ..+.+ -++. ....|+.. +. . ........++.+++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g--------~~~~~-d~~t--g~~~w~~~--~~--~---~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDG--------RVVAV-DLAT--GEKLWSKP--IS--G---IYSLPSVDGGTLYVTS 219 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTS--------SEEEE-ETTT--TEEEEEEC--SS------ECECEECCCTEEEEEE
T ss_pred ceeeecccccceEEECCEEEEEcCCC--------eEEEE-ECCC--CCEEEEec--CC--C---ccCCceeeCCEEEEEe
Confidence 00 00012234444466444433322 22333 2221 12236321 11 1 0121233445677776
Q ss_pred cCCeEEEEECCCCeEEEe
Q 048458 350 DDGELVLYDHKTQEVVQC 367 (386)
Q Consensus 350 ~~~~l~~ydl~~~~~~~v 367 (386)
.++.++++|++|++..+.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 678899999999997653
No 42
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.57 E-value=1.5 Score=41.11 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=79.9
Q ss_pred ccceEEEEEcCCCceeecCCCCCCccccCCCceEEECC-eEEEEEEeecC-------------CCC--------------
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNG-AVHWMAIRKES-------------DGT-------------- 245 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G-~lywl~~~~~~-------------~~~-------------- 245 (386)
....++.|+..+++|..+++..|.. ....+++..++ .+|..+.. .+ +.+
T Consensus 111 ~~nd~Y~y~p~~nsW~kl~t~sP~g--l~G~~~~~~~~~~i~f~GGv-n~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 111 VFNDAYRYDPSTNSWHKLDTRSPTG--LVGASTFSLNGTKIYFFGGV-NQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred EeeeeEEecCCCChhheeccccccc--cccceeEecCCceEEEEccc-cHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 3456889999999999998655665 33344566666 78877654 21 000
Q ss_pred ------CceEEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCc
Q 048458 246 ------NKDIIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVE 318 (386)
Q Consensus 246 ------~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~ 318 (386)
.-..+++||+.+++|+.. ..|-... .....+.-+++|.++.+.-. ++-++-.+|+.+=.+.+.
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~------aGsa~~~~~n~~~lInGEiK----pGLRt~~~k~~~~~~~~~ 257 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN------AGSAVVIKGNKLTLINGEIK----PGLRTAEVKQADFGGDNL 257 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccCc------cCcceeecCCeEEEEcceec----CCccccceeEEEeccCce
Confidence 124689999999999998 4665432 22344455677999887655 455667777766333457
Q ss_pred ceEEEEEeecC
Q 048458 319 HWINLFTVDLR 329 (386)
Q Consensus 319 ~W~~~~~i~~~ 329 (386)
.|.+.-..+..
T Consensus 258 ~w~~l~~lp~~ 268 (381)
T COG3055 258 KWLKLSDLPAP 268 (381)
T ss_pred eeeeccCCCCC
Confidence 89998655443
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=91.85 E-value=0.36 Score=31.39 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCceEEE-CCeEEEEEEeecCCCCCceEEEEEECCCceeeee
Q 048458 223 SNSTVHL-NGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR 263 (386)
Q Consensus 223 ~~~~v~~-~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i 263 (386)
.+..+.+ ++.+|-.++. ......-..+..||+.+++|+.+
T Consensus 4 ~h~~~~~~~~~i~v~GG~-~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGR-DSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp S-EEEEE-TTEEEEE--E-EE-TEE---EEEEETTTTEEEE-
T ss_pred eEEEEEEeCCeEEEECCC-CCCCcccCCEEEEECCCCEEEEC
Confidence 3456777 5888888877 33222235789999999999998
No 44
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.73 E-value=2.3 Score=41.23 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=65.6
Q ss_pred ceEEECCeEEEEEEeecCCCCCceEEEEEECCCc--eeeeecCCCCCCCCCC---ccceeEEEEeCCeEEEEEeeCCCCC
Q 048458 225 STVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDE--TFRYRKLPDCLYNTDH---IHRERSIGILEKSIALFVSCHTEDN 299 (386)
Q Consensus 225 ~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~---~~~~~~L~~~~G~L~lv~~~~~~~~ 299 (386)
.++..+|.+|..... +.+.+||.++. .|+. +++........ ......++..+|++++....
T Consensus 64 sPvv~~~~vy~~~~~--------g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~----- 129 (394)
T PRK11138 64 HPAVAYNKVYAADRA--------GLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK----- 129 (394)
T ss_pred ccEEECCEEEEECCC--------CeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC-----
Confidence 578899999987765 68999998744 5553 33221100000 01112345667787754321
Q ss_pred CCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCCeEEEEECCCCeEEE
Q 048458 300 TAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQ 366 (386)
Q Consensus 300 ~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~~ 366 (386)
.. +..++....+..|+.... ....-.|+.. ++.+++...++.++.+|.++++..+
T Consensus 130 ----g~--l~ald~~tG~~~W~~~~~----~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 130 ----GQ--VYALNAEDGEVAWQTKVA----GEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred ----CE--EEEEECCCCCCcccccCC----CceecCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 12 556663323467876421 1000034332 4567777667789999999998654
No 45
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.59 E-value=11 Score=36.01 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=74.3
Q ss_pred EEeeecccEEEeecCCCCccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecC
Q 048458 92 IVSSCSGLVCLLLNTFHSCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHR 171 (386)
Q Consensus 92 ~~~s~~GLl~~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~ 171 (386)
+++..+.-|+.. +..++ .+|+++.|+....+|.+.... .. ..++ .+
T Consensus 71 F~al~gskIv~~-d~~~~----t~vyDt~t~av~~~P~l~~pk----------------~~-------pisv-~V----- 116 (342)
T PF07893_consen 71 FFALHGSKIVAV-DQSGR----TLVYDTDTRAVATGPRLHSPK----------------RC-------PISV-SV----- 116 (342)
T ss_pred EEEecCCeEEEE-cCCCC----eEEEECCCCeEeccCCCCCCC----------------cc-------eEEE-Ee-----
Confidence 333334444444 45566 899999999999999876542 10 0112 11
Q ss_pred CCCeEEEEEEEeeeccccccccccceEEEEEc----------CCCceeecCCCCCCcccc------CCCceEEECCeEEE
Q 048458 172 TSDFKILLIVHAREVASEQFRREFSDIQVYSL----------KNNCWRRIQPNVPCIPCL------SSNSTVHLNGAVHW 235 (386)
Q Consensus 172 ~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss----------~~~~W~~~~~~~p~~~~~------~~~~~v~~~G~lyw 235 (386)
.++ |..+.......... ......+|+++. ++-+|+.++ ..|+.... .....|. ||.--|
T Consensus 117 G~~--LY~m~~~~~~~~~~-~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sYavv-~g~~I~ 191 (342)
T PF07893_consen 117 GDK--LYAMDRSPFPEPAG-RPDFPCFEALVYRPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSYAVV-DGRTIF 191 (342)
T ss_pred CCe--EEEeeccCcccccc-CccceeEEEeccccccccccCCCcceEEcCC-CCCccccCCcccceEEEEEEe-cCCeEE
Confidence 222 44444322111000 000014455522 234788888 55554322 3334666 898888
Q ss_pred EEEeecCCCCCceEEEEEECCCceeeee---cCCCCC
Q 048458 236 MAIRKESDGTNKDIIVSFDFGDETFRYR---KLPDCL 269 (386)
Q Consensus 236 l~~~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~ 269 (386)
+... +. ...-.+||+++.+|+.. .||-..
T Consensus 192 vS~~-~~----~~GTysfDt~~~~W~~~GdW~LPF~G 223 (342)
T PF07893_consen 192 VSVN-GR----RWGTYSFDTESHEWRKHGDWMLPFHG 223 (342)
T ss_pred EEec-CC----ceEEEEEEcCCcceeeccceecCcCC
Confidence 8655 21 03689999999999998 777543
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.92 E-value=5.9 Score=35.13 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=67.8
Q ss_pred EECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEe--CC--eEEEEEeeCCCCCCCCC
Q 048458 228 HLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGIL--EK--SIALFVSCHTEDNTAGL 303 (386)
Q Consensus 228 ~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~--~G--~L~lv~~~~~~~~~~~~ 303 (386)
.|||.+ ++... ..+.+.|+.|+++..+|.|+...... ......++-. .+ |+..+..... + ...
T Consensus 3 sCnGLl-c~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~~~~YKVv~~~~~~~-~--~~~ 69 (230)
T TIGR01640 3 PCDGLI-CFSYG--------KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVLCFSDRSG-N--RNQ 69 (230)
T ss_pred ccceEE-EEecC--------CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeecccCCcEEEEEEEeecC-C--CCC
Confidence 578888 44332 57999999999999998665421100 0111223322 12 2222222111 0 122
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEec-C---C--eEEEEECCCCeEEE-eeec
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRND-D---G--ELVLYDHKTQEVVQ-CESS 370 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~-~---~--~l~~ydl~~~~~~~-v~~~ 370 (386)
..++|+.+.. .+|..+...+ ........ ++.-+|.++.... . . .++.||++++++++ +..|
T Consensus 70 ~~~~Vys~~~----~~Wr~~~~~~-~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 70 SEHQVYTLGS----NSWRTIECSP-PHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred ccEEEEEeCC----CCccccccCC-CCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 5678888874 4799875221 11111122 4445676665432 1 1 59999999999995 6654
No 47
>PF13964 Kelch_6: Kelch motif
Probab=90.89 E-value=0.61 Score=30.43 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=19.2
Q ss_pred ccEEEEccccccceecCCCCCC
Q 048458 112 FPMFVWNPSTRKYKKIPSHKSF 133 (386)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~ 133 (386)
..+.++||.|++|..+|+++..
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCCC
Confidence 3489999999999999998764
No 48
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.81 E-value=12 Score=33.84 Aligned_cols=129 Identities=15% Similarity=0.180 Sum_probs=83.3
Q ss_pred CCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceee-eecCCCCCCCCC-----CccceeEEEEeCCeEEEEEeeCC
Q 048458 223 SNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFR-YRKLPDCLYNTD-----HIHRERSIGILEKSIALFVSCHT 296 (386)
Q Consensus 223 ~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~-----~~~~~~~L~~~~G~L~lv~~~~~ 296 (386)
....|..||.+|+-... ...|+.||+.++... ...+|....... .....+.|++.+..|-++....+
T Consensus 71 GtG~vVYngslYY~~~~-------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~ 143 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYN-------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED 143 (250)
T ss_pred cCCeEEECCcEEEEecC-------CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC
Confidence 34568899999998765 278999999999988 778887554311 23678899999989988887655
Q ss_pred CCCCCCCCEEEEEEEeec--CCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecC----Ce-EEEEECCCCeEEEeee
Q 048458 297 EDNTAGLGICSVYVMKEN--IEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDD----GE-LVLYDHKTQEVVQCES 369 (386)
Q Consensus 297 ~~~~~~~~~i~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~----~~-l~~ydl~~~~~~~v~~ 369 (386)
. ...+.|=+|+.. ...+.|.-- ++-..... ..+.| |.++..... .+ .++||+.+++-+.+.+
T Consensus 144 ~-----~g~ivvskld~~tL~v~~tw~T~--~~k~~~~n-aFmvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 144 N-----NGNIVVSKLDPETLSVEQTWNTS--YPKRSAGN-AFMVC---GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred C-----CCcEEEEeeCcccCceEEEEEec--cCchhhcc-eeeEe---eEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 2 235888888753 244566632 11111110 12222 344443321 22 7899999998887776
No 49
>smart00284 OLF Olfactomedin-like domains.
Probab=90.56 E-value=12 Score=33.85 Aligned_cols=129 Identities=15% Similarity=0.223 Sum_probs=79.3
Q ss_pred CCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCCC--C---CccceeEEEEeCCeEEEEEeeCC
Q 048458 223 SNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYNT--D---HIHRERSIGILEKSIALFVSCHT 296 (386)
Q Consensus 223 ~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~--~---~~~~~~~L~~~~G~L~lv~~~~~ 296 (386)
....|..||.+|+-... ...|+-||+.+++.... .+|...... . .+...+.|++.+..|-++.....
T Consensus 76 GtG~VVYngslYY~~~~-------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~ 148 (255)
T smart00284 76 GTGVVVYNGSLYFNKFN-------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ 148 (255)
T ss_pred cccEEEECceEEEEecC-------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC
Confidence 34578999999996544 26799999999998644 577532111 0 12567899999988988877644
Q ss_pred CCCCCCCCEEEEEEEeec--CCCcceEEEEEeecCCCceeEEEEEecCCeEEEEec----CCe-EEEEECCCCeEEEeee
Q 048458 297 EDNTAGLGICSVYVMKEN--IEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRND----DGE-LVLYDHKTQEVVQCES 369 (386)
Q Consensus 297 ~~~~~~~~~i~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~----~~~-l~~ydl~~~~~~~v~~ 369 (386)
....|.|-+|+.. ...+.|.-- ++-..-.. ..+.| |.++.... ..+ .++||..+++-+.+.+
T Consensus 149 -----~~g~ivvSkLnp~tL~ve~tW~T~--~~k~sa~n-aFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 149 -----NAGKIVISKLNPATLTIENTWITT--YNKRSASN-AFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred -----CCCCEEEEeeCcccceEEEEEEcC--CCcccccc-cEEEe---eEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 2256888888753 234566642 11111000 11222 34444331 122 8899999988777666
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.18 E-value=17 Score=34.49 Aligned_cols=153 Identities=14% Similarity=0.251 Sum_probs=81.1
Q ss_pred cceEEEEEcCCCc--eeecC-CCCCCccccCCCceE-EECCeEEEEEEeecCCCCCceEEEEEECC--Cceeeee----c
Q 048458 195 FSDIQVYSLKNNC--WRRIQ-PNVPCIPCLSSNSTV-HLNGAVHWMAIRKESDGTNKDIIVSFDFG--DETFRYR----K 264 (386)
Q Consensus 195 ~~~~~vyss~~~~--W~~~~-~~~p~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~~~il~fD~~--~~~~~~i----~ 264 (386)
.-.+.+|+...+. ..... ..++... ..+..+ .-+|..-++... . ...|.+|+.. +..++.+ .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~--GPRh~~f~pdg~~~Yv~~e-~-----s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGS--GPRHLAFSPDGKYAYVVNE-L-----SNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTS--SEEEEEE-TTSSEEEEEET-T-----TTEEEEEEEETTTTEEEEEEEEES
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCC--CCcEEEEcCCcCEEEEecC-C-----CCcEEEEeecccCCceeEEEEeee
Confidence 3467888876654 43322 0112211 111122 226654444444 2 1567777776 6666655 3
Q ss_pred CCCCCCCCCCccceeEEEEe-CCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCC
Q 048458 265 LPDCLYNTDHIHRERSIGIL-EKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGAND 343 (386)
Q Consensus 265 ~P~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g 343 (386)
+|...... ..-..+... +|+..++.-... +.|.++.+++. ++.-+++..++.....+ +-++++++|
T Consensus 237 ~~~~~~~~---~~~~~i~ispdg~~lyvsnr~~-------~sI~vf~~d~~--~g~l~~~~~~~~~G~~P-r~~~~s~~g 303 (345)
T PF10282_consen 237 LPEGFTGE---NAPAEIAISPDGRFLYVSNRGS-------NSISVFDLDPA--TGTLTLVQTVPTGGKFP-RHFAFSPDG 303 (345)
T ss_dssp CETTSCSS---SSEEEEEE-TTSSEEEEEECTT-------TEEEEEEECTT--TTTEEEEEEEEESSSSE-EEEEE-TTS
T ss_pred cccccccc---CCceeEEEecCCCEEEEEeccC-------CEEEEEEEecC--CCceEEEEEEeCCCCCc-cEEEEeCCC
Confidence 44433221 133444444 677666655555 79999999753 24456666666543333 677888888
Q ss_pred eEEE-Eec-CCeEEEE--ECCCCeEEEee
Q 048458 344 EVML-RND-DGELVLY--DHKTQEVVQCE 368 (386)
Q Consensus 344 ~i~l-~~~-~~~l~~y--dl~~~~~~~v~ 368 (386)
+.++ ... ++.+..| |.++++++.+.
T Consensus 304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 7444 433 3455555 67899988775
No 51
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.38 E-value=11 Score=37.26 Aligned_cols=17 Identities=12% Similarity=-0.097 Sum_probs=14.8
Q ss_pred eEEEEECCCCeEEEeee
Q 048458 353 ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 353 ~l~~ydl~~~~~~~v~~ 369 (386)
.+.++|+++..|+.+-+
T Consensus 295 sl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 295 SLACLNLDTMAWETLLM 311 (830)
T ss_pred ceeeeeecchheeeeee
Confidence 38999999999998876
No 52
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.05 E-value=8.9 Score=36.53 Aligned_cols=114 Identities=6% Similarity=-0.021 Sum_probs=63.4
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCC--CEEEEEEEee----cCCCcceE
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGL--GICSVYVMKE----NIEVEHWI 321 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~--~~i~iW~l~~----~~~~~~W~ 321 (386)
+..+.||+++......| .-... ......+..+|+|++............. ..+++-.... ....+.|.
T Consensus 86 ~~t~vyDt~t~av~~~P--~l~~p----k~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~ 159 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGP--RLHSP----KRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWS 159 (342)
T ss_pred CCeEEEECCCCeEeccC--CCCCC----CcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcce
Confidence 56899999998888543 32211 1223444558889988765441000000 0444433221 12234555
Q ss_pred EEEEeecCC---Cce-----eEEEEEecCC-eEEEEecCC--eEEEEECCCCeEEEeee
Q 048458 322 NLFTVDLRA---QFA-----WQYLGFGAND-EVMLRNDDG--ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 322 ~~~~i~~~~---~~~-----~~~~~~~~~g-~i~l~~~~~--~l~~ydl~~~~~~~v~~ 369 (386)
-.. ++... ... ..-.++. +| .|+++.... ..+.||.++.+|++++-
T Consensus 160 W~~-LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 160 WRS-LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred EEc-CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 433 33222 111 2445666 55 688877654 59999999999999854
No 53
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.95 E-value=16 Score=35.60 Aligned_cols=148 Identities=11% Similarity=0.173 Sum_probs=80.4
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEEECCe-EEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGA-VHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTD 273 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 273 (386)
...+.+|......=..+. .+-+...+......+-+|. .-+.+.. +..+.+||+.+.+.+.+..|......
T Consensus 234 d~~lrifqvDGk~N~~lq-S~~l~~fPi~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak~~k~~~~~g~e~~- 304 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQ-SIHLEKFPIQKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAKVTKLKPPYGVEEK- 304 (514)
T ss_pred CCcEEEEEecCccChhhe-eeeeccCccceeeecCCCceEEEeccc-------ceEEEEeeccccccccccCCCCcccc-
Confidence 456677777654333344 3332222333334445665 3333333 37899999999999999888776532
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-EEEEecCC
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-VMLRNDDG 352 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i~l~~~~~ 352 (386)
..+.+=+.-++...++.+... .|.+-..+ .++|.--..|+-.. .-+.+..+++ |+.....+
T Consensus 305 --~~e~FeVShd~~fia~~G~~G--------~I~lLhak----T~eli~s~KieG~v----~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 305 --SMERFEVSHDSNFIAIAGNNG--------HIHLLHAK----TKELITSFKIEGVV----SDFTFSSDSKELLASGGTG 366 (514)
T ss_pred --hhheeEecCCCCeEEEcccCc--------eEEeehhh----hhhhhheeeeccEE----eeEEEecCCcEEEEEcCCc
Confidence 122222333444444444332 44433222 24455444443221 4455556675 55555567
Q ss_pred eEEEEECCCCeEEEeee
Q 048458 353 ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 353 ~l~~ydl~~~~~~~v~~ 369 (386)
.++.+|++.++....-.
T Consensus 367 eV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFV 383 (514)
T ss_pred eEEEEecCCcceEEEEe
Confidence 89999999997654433
No 54
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.54 E-value=19 Score=32.87 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=120.8
Q ss_pred eEEe-eecccEEEeecCCCCccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeee
Q 048458 91 QIVS-SCSGLVCLLLNTFHSCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYD 169 (386)
Q Consensus 91 ~~~~-s~~GLl~~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d 169 (386)
+.++ +-+|-|-+.....+. +==.||.|++-...|...... +......|.+.. +..-...+-.-+|
T Consensus 65 ~dvapapdG~VWft~qg~ga----iGhLdP~tGev~~ypLg~Ga~-------Phgiv~gpdg~~---Witd~~~aI~R~d 130 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGA----IGHLDPATGEVETYPLGSGAS-------PHGIVVGPDGSA---WITDTGLAIGRLD 130 (353)
T ss_pred cccccCCCCceEEecCcccc----ceecCCCCCceEEEecCCCCC-------CceEEECCCCCe---eEecCcceeEEec
Confidence 3444 557877666233344 556799999999888766542 000000000000 0000000001134
Q ss_pred cCCCCeEEEEEEEeeeccccccccccceEEEEEcCCCceeecCC----CC-CCc-------c-ccC--CCceEEECCeEE
Q 048458 170 HRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQP----NV-PCI-------P-CLS--SNSTVHLNGAVH 234 (386)
Q Consensus 170 ~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~----~~-p~~-------~-~~~--~~~~v~~~G~ly 234 (386)
+.+.+++-+-+.... ....+.--||+-..+-|-+-.. .+ |.. . .-. ..-++.-||.+|
T Consensus 131 pkt~evt~f~lp~~~-------a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvw 203 (353)
T COG4257 131 PKTLEVTRFPLPLEH-------ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVW 203 (353)
T ss_pred CcccceEEeeccccc-------CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEE
Confidence 444443333332211 1335566788888888844331 00 000 0 001 112455689998
Q ss_pred EEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEE-EeCCeEEEEEeeCCCCCCCCCCEEEEEEEee
Q 048458 235 WMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIG-ILEKSIALFVSCHTEDNTAGLGICSVYVMKE 313 (386)
Q Consensus 235 wl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~-~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~ 313 (386)
+-... + .+|.-.|+.+..-.+++.|...... ...+. ...|++-+-... .-.+.+.+-
T Consensus 204 yasla-g------naiaridp~~~~aev~p~P~~~~~g-----sRriwsdpig~~wittwg----------~g~l~rfdP 261 (353)
T COG4257 204 YASLA-G------NAIARIDPFAGHAEVVPQPNALKAG-----SRRIWSDPIGRAWITTWG----------TGSLHRFDP 261 (353)
T ss_pred EEecc-c------cceEEcccccCCcceecCCCccccc-----ccccccCccCcEEEeccC----------CceeeEeCc
Confidence 77555 3 6899999999988999999875321 12222 224555444321 222334442
Q ss_pred cCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEe-cCCeEEEEECCCCeEEEeee
Q 048458 314 NIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRN-DDGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 314 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~-~~~~l~~ydl~~~~~~~v~~ 369 (386)
...+|..- .++-..-.. .-+-++..|.|.+.. ..+.+.-||+++.++..+-+
T Consensus 262 --s~~sW~ey-pLPgs~arp-ys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 262 --SVTSWIEY-PLPGSKARP-YSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred --ccccceee-eCCCCCCCc-ceeeeccCCcEEeeccccCceeecCcccceEEEecC
Confidence 23568753 333222122 345667777888864 34569999999999998877
No 55
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.27 E-value=8 Score=34.84 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=84.8
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCC----ceeeeecCCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGD----ETFRYRKLPDCLY 270 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~----~~~~~i~~P~~~~ 270 (386)
.....+|+..++++|.+.. ..-. ..+...+.-||.+.-.++. .. ....+-.|++.+ ..|. ..|..+.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v-~td~--FCSgg~~L~dG~ll~tGG~-~~---G~~~ir~~~p~~~~~~~~w~--e~~~~m~ 115 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTV-QTDT--FCSGGAFLPDGRLLQTGGD-ND---GNKAIRIFTPCTSDGTCDWT--ESPNDMQ 115 (243)
T ss_pred eEEEEEEecCCCcEEeccC-CCCC--cccCcCCCCCCCEEEeCCC-Cc---cccceEEEecCCCCCCCCce--ECccccc
Confidence 4456789999999998872 2111 2333356678887765554 22 225677888764 3344 3333222
Q ss_pred CCCCccceeEEEEe-CCeEEEEEeeCCCCCCCCCCEEEEEEEeecC-CCcceEEEEEeecCCCcee-EEEEEecCCeEEE
Q 048458 271 NTDHIHRERSIGIL-EKSIALFVSCHTEDNTAGLGICSVYVMKENI-EVEHWINLFTVDLRAQFAW-QYLGFGANDEVML 347 (386)
Q Consensus 271 ~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~-~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~i~l 347 (386)
.. ........+ +|++.++++... .+.+.|--.... ....|.............+ -.+.+.++|+|++
T Consensus 116 ~~---RWYpT~~~L~DG~vlIvGG~~~-------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi 185 (243)
T PF07250_consen 116 SG---RWYPTATTLPDGRVLIVGGSNN-------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFI 185 (243)
T ss_pred CC---CccccceECCCCCEEEEeCcCC-------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEE
Confidence 11 234444444 899999998776 566766432211 1112222211111111111 3345667898888
Q ss_pred EecCCeEEEEECCCCeE-EEe
Q 048458 348 RNDDGELVLYDHKTQEV-VQC 367 (386)
Q Consensus 348 ~~~~~~l~~ydl~~~~~-~~v 367 (386)
.... .-..||.+++++ +.+
T Consensus 186 ~an~-~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 186 FANR-GSIIYDYKTNTVVRTL 205 (243)
T ss_pred EEcC-CcEEEeCCCCeEEeeC
Confidence 7653 477789999986 444
No 56
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.20 E-value=27 Score=34.01 Aligned_cols=146 Identities=12% Similarity=0.140 Sum_probs=78.0
Q ss_pred ceEEEEEcCCC-----ceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCce---eeeecCCC
Q 048458 196 SDIQVYSLKNN-----CWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDET---FRYRKLPD 267 (386)
Q Consensus 196 ~~~~vyss~~~-----~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~---~~~i~~P~ 267 (386)
..+.+.+..++ .|+.+....+-. .......++.+|.++.. + ...+.|++.|+.+.. |..+-.|.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~----~~~v~~~~~~~yi~Tn~-~---a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGV----EYYVDHHGDRLYILTND-D---APNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-----EEEEEEETTEEEEEE-T-T----TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCce----EEEEEccCCEEEEeeCC-C---CCCcEEEEecccccccccceeEEcCC
Confidence 56677777654 676665111110 11123457788887765 2 223799999998765 55333332
Q ss_pred CCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEe--cCC-e
Q 048458 268 CLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFG--AND-E 344 (386)
Q Consensus 268 ~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--~~g-~ 344 (386)
... .....+...++.|.+....... ..+.++.++ ..|.. ..+++.... ...++. .++ .
T Consensus 324 ~~~-----~~l~~~~~~~~~Lvl~~~~~~~------~~l~v~~~~-----~~~~~-~~~~~p~~g--~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 324 DED-----VSLEDVSLFKDYLVLSYRENGS------SRLRVYDLD-----DGKES-REIPLPEAG--SVSGVSGDFDSDE 384 (414)
T ss_dssp SSS-----EEEEEEEEETTEEEEEEEETTE------EEEEEEETT------TEEE-EEEESSSSS--EEEEEES-TT-SE
T ss_pred CCc-----eeEEEEEEECCEEEEEEEECCc------cEEEEEECC-----CCcEE-eeecCCcce--EEeccCCCCCCCE
Confidence 211 2344555668888887776542 455555444 12443 334443332 222333 233 5
Q ss_pred EEEEec----CCeEEEEECCCCeEEEee
Q 048458 345 VMLRND----DGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 345 i~l~~~----~~~l~~ydl~~~~~~~v~ 368 (386)
+++... -..++.||+++++.+.+.
T Consensus 385 ~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 385 LRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 666432 135999999999998764
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.95 E-value=10 Score=36.37 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=59.4
Q ss_pred CceEEECCeEEEEEEeecCCCCCceEEEEEECCCce--eeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCC
Q 048458 224 NSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDET--FRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTA 301 (386)
Q Consensus 224 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~ 301 (386)
..++..+|.+|..... +.+.+||..+.+ |+ .+++.... ...+..++.+++... .
T Consensus 59 ~~p~v~~~~v~v~~~~--------g~v~a~d~~tG~~~W~-~~~~~~~~--------~~p~v~~~~v~v~~~-~------ 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD--------GTVVALDAETGKRLWR-VDLDERLS--------GGVGADGGLVFVGTE-K------ 114 (377)
T ss_pred cceEEECCEEEEECCC--------CeEEEEEccCCcEeee-ecCCCCcc--------cceEEcCCEEEEEcC-C------
Confidence 3578889999977655 689999987554 54 24444321 122344555554332 1
Q ss_pred CCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCCeEEEEECCCCeEEE
Q 048458 302 GLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQ 366 (386)
Q Consensus 302 ~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~~ 366 (386)
.. ++.++-...+..|.... . ......|.. .++.+++...++.++.+|+++++..+
T Consensus 115 --g~--l~ald~~tG~~~W~~~~--~--~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 115 --GE--VIALDAEDGKELWRAKL--S--SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred --CE--EEEEECCCCcEeeeecc--C--ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence 12 44555322235676431 1 100002222 24567776666779999999887543
No 58
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.74 E-value=24 Score=32.33 Aligned_cols=125 Identities=12% Similarity=0.127 Sum_probs=76.9
Q ss_pred eEEeeecccEEEeecCCCCccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeec
Q 048458 91 QIVSSCSGLVCLLLNTFHSCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDH 170 (386)
Q Consensus 91 ~~~~s~~GLl~~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~ 170 (386)
-+++.-+|=|-...-.... +...||.++.-.++|+|.... + ..- ....|+
T Consensus 193 Gi~atpdGsvwyaslagna----iaridp~~~~aev~p~P~~~~---------------~----------gsR-riwsdp 242 (353)
T COG4257 193 GICATPDGSVWYASLAGNA----IARIDPFAGHAEVVPQPNALK---------------A----------GSR-RIWSDP 242 (353)
T ss_pred ceEECCCCcEEEEeccccc----eEEcccccCCcceecCCCccc---------------c----------ccc-ccccCc
Confidence 4555556666544112333 677899999888888887642 0 111 333444
Q ss_pred CCCCeEEEEEEEeeeccccccccccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCe-EEEEEEeecCCCCCceE
Q 048458 171 RTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGA-VHWMAIRKESDGTNKDI 249 (386)
Q Consensus 171 ~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~ 249 (386)
.. -+++.. ...-.++.|+..+.+|+.-+ +|-.. -...++++|.. .-|+..- + .+.
T Consensus 243 ig----~~witt----------wg~g~l~rfdPs~~sW~eyp--LPgs~--arpys~rVD~~grVW~sea-~-----aga 298 (353)
T COG4257 243 IG----RAWITT----------WGTGSLHRFDPSVTSWIEYP--LPGSK--ARPYSMRVDRHGRVWLSEA-D-----AGA 298 (353)
T ss_pred cC----cEEEec----------cCCceeeEeCcccccceeee--CCCCC--CCcceeeeccCCcEEeecc-c-----cCc
Confidence 32 122222 23456788999999998776 33322 12235666653 4566433 2 279
Q ss_pred EEEEECCCceeeeecCCCCC
Q 048458 250 IVSFDFGDETFRYRKLPDCL 269 (386)
Q Consensus 250 il~fD~~~~~~~~i~~P~~~ 269 (386)
|.-||+++++|+++++|...
T Consensus 299 i~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 299 IGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eeecCcccceEEEecCCCCC
Confidence 99999999999999988654
No 59
>smart00612 Kelch Kelch domain.
Probab=86.31 E-value=1.2 Score=28.13 Aligned_cols=34 Identities=24% Similarity=0.545 Sum_probs=23.4
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEEECC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNG 231 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G 231 (386)
...+++|+.+++.|+..+ .++.. ......+.++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~-~~~~~--r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP-SMPTP--RSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCC-CCCCc--cccceEEEeCC
Confidence 457899999999999888 56543 33333455544
No 60
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.27 E-value=14 Score=35.51 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=68.2
Q ss_pred eEEECCeEEEEEEeecCCCCCceEEEEEECCCce--eeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCC
Q 048458 226 TVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDET--FRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGL 303 (386)
Q Consensus 226 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~ 303 (386)
+++.+|++|..... +.|.+||.++.. |+.-...... .....+...+|++++-.. .
T Consensus 64 ~~~~dg~v~~~~~~--------G~i~A~d~~~g~~~W~~~~~~~~~------~~~~~~~~~~G~i~~g~~--~------- 120 (370)
T COG1520 64 PADGDGTVYVGTRD--------GNIFALNPDTGLVKWSYPLLGAVA------QLSGPILGSDGKIYVGSW--D------- 120 (370)
T ss_pred cEeeCCeEEEecCC--------CcEEEEeCCCCcEEecccCcCcce------eccCceEEeCCeEEEecc--c-------
Confidence 59999999998655 689999999776 6554433000 111122223788444333 2
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCCeEEEEECCCCeEEEe
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQC 367 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~~v 367 (386)
. .++.+++...+..|...... . ..+.--.+..++.|++.+.+++++..|.++++.++-
T Consensus 121 g--~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 121 G--KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred c--eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 1 67888873334678875433 1 222111233456677776668899999998887554
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.77 E-value=32 Score=32.94 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=65.2
Q ss_pred eEEEEEcCCC--ceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCc--eeeeecCCCCCCCC
Q 048458 197 DIQVYSLKNN--CWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDE--TFRYRKLPDCLYNT 272 (386)
Q Consensus 197 ~~~vyss~~~--~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~ 272 (386)
.+..++..++ .|+.--.. . ....++..+|.+|.-..+ +.+.+||..+. .|+. .++...
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~-~-----~~~~p~v~~~~v~v~~~~--------g~l~ald~~tG~~~W~~-~~~~~~--- 137 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE-R-----LSGGVGADGGLVFVGTEK--------GEVIALDAEDGKELWRA-KLSSEV--- 137 (377)
T ss_pred eEEEEEccCCcEeeeecCCC-C-----cccceEEcCCEEEEEcCC--------CEEEEEECCCCcEeeee-ccCcee---
Confidence 4566665554 58644311 1 122356667888854444 68999998654 4543 333221
Q ss_pred CCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCcee-EEEEEecCCeEEEEecC
Q 048458 273 DHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAW-QYLGFGANDEVMLRNDD 351 (386)
Q Consensus 273 ~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~i~l~~~~ 351 (386)
.......++++++... . ..+..+-.+. .+..|+.....+....... .|... ++.+++...+
T Consensus 138 -----~~~p~v~~~~v~v~~~--~-------g~l~a~d~~t--G~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~ 199 (377)
T TIGR03300 138 -----LSPPLVANGLVVVRTN--D-------GRLTALDAAT--GERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAG 199 (377)
T ss_pred -----ecCCEEECCEEEEECC--C-------CeEEEEEcCC--CceeeEEccCCCceeecCCCCCEEE--CCEEEEECCC
Confidence 1111223555444322 1 2333333321 2345664322111000001 33332 3566666666
Q ss_pred CeEEEEECCCCeEEE
Q 048458 352 GELVLYDHKTQEVVQ 366 (386)
Q Consensus 352 ~~l~~ydl~~~~~~~ 366 (386)
+.++.+|+++++..+
T Consensus 200 g~v~ald~~tG~~~W 214 (377)
T TIGR03300 200 GKLVALDLQTGQPLW 214 (377)
T ss_pred CEEEEEEccCCCEee
Confidence 789999999887543
No 62
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.39 E-value=41 Score=32.52 Aligned_cols=141 Identities=8% Similarity=0.116 Sum_probs=74.6
Q ss_pred eEEEEEcCCC--ceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCce--eee-ecCCCCCCC
Q 048458 197 DIQVYSLKNN--CWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDET--FRY-RKLPDCLYN 271 (386)
Q Consensus 197 ~~~vyss~~~--~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~--~~~-i~~P~~~~~ 271 (386)
.+..++..++ .|+.-. ..|.........++..+|.+|+-..+ +.+.++|..+.+ |+. +..|.....
T Consensus 171 ~l~ald~~tG~~~W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 171 MLQALNESDGAVKWTVNL-DVPSLTLRGESAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred EEEEEEccCCCEeeeecC-CCCcccccCCCCCEEECCEEEEEcCC--------CEEEEEEccCChhhheeccccCCCccc
Confidence 4666777665 587654 22211111234578888988876554 689999998654 543 222322110
Q ss_pred CCC-ccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEec
Q 048458 272 TDH-IHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRND 350 (386)
Q Consensus 272 ~~~-~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~ 350 (386)
..+ ......-+..+|.+++.... .. ++.++-...+..|.... . ... .+ .+ .++.||+...
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~---------g~--l~ald~~tG~~~W~~~~--~--~~~--~~-~~-~~~~vy~~~~ 302 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYN---------GN--LVALDLRSGQIVWKREY--G--SVN--DF-AV-DGGRIYLVDQ 302 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcC---------Ce--EEEEECCCCCEEEeecC--C--Ccc--Cc-EE-ECCEEEEEcC
Confidence 000 00112223457777765432 12 34454322345687532 1 100 12 22 3467888877
Q ss_pred CCeEEEEECCCCeEE
Q 048458 351 DGELVLYDHKTQEVV 365 (386)
Q Consensus 351 ~~~l~~ydl~~~~~~ 365 (386)
+++++.+|.++++..
T Consensus 303 ~g~l~ald~~tG~~~ 317 (394)
T PRK11138 303 NDRVYALDTRGGVEL 317 (394)
T ss_pred CCeEEEEECCCCcEE
Confidence 788999999988743
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=83.48 E-value=32 Score=30.62 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=68.2
Q ss_pred eEEE--CCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCC
Q 048458 226 TVHL--NGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGL 303 (386)
Q Consensus 226 ~v~~--~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~ 303 (386)
+++. +|.|||.... . ..|..+|..++..+.+.+|... ...+-.-+|+|++....
T Consensus 5 p~~d~~~g~l~~~D~~-~------~~i~~~~~~~~~~~~~~~~~~~--------G~~~~~~~g~l~v~~~~--------- 60 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIP-G------GRIYRVDPDTGEVEVIDLPGPN--------GMAFDRPDGRLYVADSG--------- 60 (246)
T ss_dssp EEEETTTTEEEEEETT-T------TEEEEEETTTTEEEEEESSSEE--------EEEEECTTSEEEEEETT---------
T ss_pred eEEECCCCEEEEEEcC-C------CEEEEEECCCCeEEEEecCCCc--------eEEEEccCCEEEEEEcC---------
Confidence 4555 6999999765 3 7899999999999988877621 11111135777666542
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCC--CceeEEEEEecCCeEEEEecC---------CeEEEEECCCCeEEEe
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRA--QFAWQYLGFGANDEVMLRNDD---------GELVLYDHKTQEVVQC 367 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~--~~~~~~~~~~~~g~i~l~~~~---------~~l~~ydl~~~~~~~v 367 (386)
.+.+. + . ...+++......... .....-++++++|.+++.... ++++.++++ ++.+.+
T Consensus 61 -~~~~~--d-~-~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 61 -GIAVV--D-P-DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp -CEEEE--E-T-TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred -ceEEE--e-c-CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 23222 3 2 135677777764222 121145778888888886421 458999999 665554
No 64
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.12 E-value=47 Score=31.52 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=70.2
Q ss_pred CCeEEEEEEeecCCCCCceEEEEEECCCce--ee---eecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCC
Q 048458 230 NGAVHWMAIRKESDGTNKDIIVSFDFGDET--FR---YRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLG 304 (386)
Q Consensus 230 ~G~lywl~~~~~~~~~~~~~il~fD~~~~~--~~---~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~ 304 (386)
+|...|.... + ...|..|++..+. +. .+.+|.... ..++.+-. +|+.+++..... +
T Consensus 154 dg~~v~v~dl-G-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-----PRh~~f~p-dg~~~Yv~~e~s-------~ 214 (345)
T PF10282_consen 154 DGRFVYVPDL-G-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSG-----PRHLAFSP-DGKYAYVVNELS-------N 214 (345)
T ss_dssp TSSEEEEEET-T-----TTEEEEEEE-TTS-TEEEEEEEECSTTSS-----EEEEEE-T-TSSEEEEEETTT-------T
T ss_pred CCCEEEEEec-C-----CCEEEEEEEeCCCceEEEeeccccccCCC-----CcEEEEcC-CcCEEEEecCCC-------C
Confidence 5666666554 3 2678888887655 43 346666542 22222222 566655555444 6
Q ss_pred EEEEEEEeecCCCcceEEEEEeecCC---Cce-e-EEEEEecCCe-EEEEec-CCeEEEEEC--CCCeEEEeee
Q 048458 305 ICSVYVMKENIEVEHWINLFTVDLRA---QFA-W-QYLGFGANDE-VMLRND-DGELVLYDH--KTQEVVQCES 369 (386)
Q Consensus 305 ~i~iW~l~~~~~~~~W~~~~~i~~~~---~~~-~-~~~~~~~~g~-i~l~~~-~~~l~~ydl--~~~~~~~v~~ 369 (386)
++.++.++.. +..++.+.++.... ... . .-+++++||+ +|+..+ ...+..|++ ++++++.++.
T Consensus 215 ~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 215 TVSVFDYDPS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEEEEEETT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred cEEEEeeccc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 9999988832 34688887776542 111 1 5677888886 556554 345888887 5677877754
No 65
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.71 E-value=40 Score=31.38 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=65.2
Q ss_pred ceEEECCeEEEEEEeecCCCCCceEEEEEECCCce-eeeecCCCCCCCCCCccceeEEEEeCCeE---EEEEeeCCCCCC
Q 048458 225 STVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDET-FRYRKLPDCLYNTDHIHRERSIGILEKSI---ALFVSCHTEDNT 300 (386)
Q Consensus 225 ~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~L~~~~G~L---~lv~~~~~~~~~ 300 (386)
.+|.++|-.-.-+.. ...|..||+.+.. ...+-.|.+. +.-.-+.+-+ .++....+
T Consensus 47 tavAVs~~~~aSGss-------DetI~IYDm~k~~qlg~ll~Hags---------itaL~F~~~~S~shLlS~sdD---- 106 (362)
T KOG0294|consen 47 TALAVSGPYVASGSS-------DETIHIYDMRKRKQLGILLSHAGS---------ITALKFYPPLSKSHLLSGSDD---- 106 (362)
T ss_pred eEEEecceeEeccCC-------CCcEEEEeccchhhhcceeccccc---------eEEEEecCCcchhheeeecCC----
Confidence 467788864333322 2789999998653 3333333321 1111122222 66666666
Q ss_pred CCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEec-CCeEEEEECCCCeEEE
Q 048458 301 AGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRND-DGELVLYDHKTQEVVQ 366 (386)
Q Consensus 301 ~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~-~~~l~~ydl~~~~~~~ 366 (386)
..|.||..+ +|....++...... ..-+++++.|++-+.-. +..+-.|||-+++.-.
T Consensus 107 ---G~i~iw~~~------~W~~~~slK~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 107 ---GHIIIWRVG------SWELLKSLKAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred ---CcEEEEEcC------CeEEeeeecccccc-cceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 789999876 49888877644321 25667777777666543 3457777776666433
No 66
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.37 E-value=36 Score=29.76 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=74.3
Q ss_pred eEEEEEcCCC--ceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeee-ecCCCCCCCCC
Q 048458 197 DIQVYSLKNN--CWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRY-RKLPDCLYNTD 273 (386)
Q Consensus 197 ~~~vyss~~~--~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~ 273 (386)
.+..++..++ .|+.-- ..... .....++.-+|.+|..... +.|.++|..+.+-.. ..++....
T Consensus 4 ~l~~~d~~tG~~~W~~~~-~~~~~--~~~~~~~~~~~~v~~~~~~--------~~l~~~d~~tG~~~W~~~~~~~~~--- 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-GPGIG--GPVATAVPDGGRVYVASGD--------GNLYALDAKTGKVLWRFDLPGPIS--- 69 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-SSSCS--SEEETEEEETTEEEEEETT--------SEEEEEETTTSEEEEEEECSSCGG---
T ss_pred EEEEEECCCCCEEEEEEC-CCCCC--CccceEEEeCCEEEEEcCC--------CEEEEEECCCCCEEEEeecccccc---
Confidence 4566777664 577532 11111 0011144578888877443 799999986554322 24444332
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEE-EEEeecCCCceeEEEEEecCCeEEEEecCC
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWIN-LFTVDLRAQFAWQYLGFGANDEVMLRNDDG 352 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~ 352 (386)
.. ....++++++... + . .++.++-...+..|.. ...-+......-....+. ++.+++....+
T Consensus 70 ---~~--~~~~~~~v~v~~~--~-------~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 132 (238)
T PF13360_consen 70 ---GA--PVVDGGRVYVGTS--D-------G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSG 132 (238)
T ss_dssp ---SG--EEEETTEEEEEET--T-------S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCS
T ss_pred ---ce--eeecccccccccc--e-------e--eeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccC
Confidence 11 3677888876662 2 2 5666762223467884 332111111110112222 44577776678
Q ss_pred eEEEEECCCCeEEE
Q 048458 353 ELVLYDHKTQEVVQ 366 (386)
Q Consensus 353 ~l~~ydl~~~~~~~ 366 (386)
.++.+|+++++..+
T Consensus 133 ~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 133 KLVALDPKTGKLLW 146 (238)
T ss_dssp EEEEEETTTTEEEE
T ss_pred cEEEEecCCCcEEE
Confidence 89999999999744
No 67
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.38 E-value=22 Score=33.64 Aligned_cols=122 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCeEEEEEEeecCCCCCceEEEEEECCCceeeee---cCCCCCCCCC----CccceeEEEEeCCeEEEEEeeCCCCCCCC
Q 048458 230 NGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR---KLPDCLYNTD----HIHRERSIGILEKSIALFVSCHTEDNTAG 302 (386)
Q Consensus 230 ~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~~~~----~~~~~~~L~~~~G~L~lv~~~~~~~~~~~ 302 (386)
+|.+||++.. +.|...|+..+.-... ++-...+..+ .+.+-..+-.-.|+|++...... +.+=+
T Consensus 195 ~~~~~F~Sy~--------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~-~gsHK 265 (342)
T PF06433_consen 195 GGRLYFVSYE--------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG-EGSHK 265 (342)
T ss_dssp TTEEEEEBTT--------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE---TT-TT
T ss_pred CCeEEEEecC--------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC-CCCcc
Q ss_pred CCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCC--eEE-EEecCCeEEEEECCCCeEEE
Q 048458 303 LGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGAND--EVM-LRNDDGELVLYDHKTQEVVQ 366 (386)
Q Consensus 303 ~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g--~i~-l~~~~~~l~~ydl~~~~~~~ 366 (386)
...-+||+++- +.=.++.+|++.... ..+++..+. .++ +...++.|.+||..|++...
T Consensus 266 dpgteVWv~D~----~t~krv~Ri~l~~~~--~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 266 DPGTEVWVYDL----KTHKRVARIPLEHPI--DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp S-EEEEEEEET----TTTEEEEEEEEEEEE--SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCceEEEEEEC----CCCeEEEEEeCCCcc--ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
No 68
>PLN02772 guanylate kinase
Probab=80.23 E-value=11 Score=36.34 Aligned_cols=76 Identities=8% Similarity=-0.013 Sum_probs=51.8
Q ss_pred CceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeec----CCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCC
Q 048458 224 NSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRK----LPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDN 299 (386)
Q Consensus 224 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~ 299 (386)
...|.+++++|.+++. .........+.+||..+.+|..-. .|... ..+-..+.-+++|.++.....
T Consensus 28 ~tav~igdk~yv~GG~-~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r------~GhSa~v~~~~rilv~~~~~~--- 97 (398)
T PLN02772 28 ETSVTIGDKTYVIGGN-HEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC------KGYSAVVLNKDRILVIKKGSA--- 97 (398)
T ss_pred ceeEEECCEEEEEccc-CCCccccceEEEEECCCCcEecccccCCCCCCC------CcceEEEECCceEEEEeCCCC---
Confidence 4578999999999976 333223368999999999998752 23222 123344445789988876655
Q ss_pred CCCCCEEEEEEEee
Q 048458 300 TAGLGICSVYVMKE 313 (386)
Q Consensus 300 ~~~~~~i~iW~l~~ 313 (386)
..=+||.|+-
T Consensus 98 ----~~~~~w~l~~ 107 (398)
T PLN02772 98 ----PDDSIWFLEV 107 (398)
T ss_pred ----CccceEEEEc
Confidence 3467899873
No 69
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=80.13 E-value=54 Score=30.95 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=72.1
Q ss_pred CCeEEEEEEeecCCCCCceEEEEEECCCceeeee---cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEE
Q 048458 230 NGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR---KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGIC 306 (386)
Q Consensus 230 ~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i 306 (386)
+|.+-|...- + ...|..||++....... .+++.. +.+--..--+|+++++...-. +++
T Consensus 155 ~~~~l~v~DL-G-----~Dri~~y~~~dg~L~~~~~~~v~~G~------GPRHi~FHpn~k~aY~v~EL~-------stV 215 (346)
T COG2706 155 DGRYLVVPDL-G-----TDRIFLYDLDDGKLTPADPAEVKPGA------GPRHIVFHPNGKYAYLVNELN-------STV 215 (346)
T ss_pred CCCEEEEeec-C-----CceEEEEEcccCccccccccccCCCC------CcceEEEcCCCcEEEEEeccC-------CEE
Confidence 4555554443 2 26788888886655543 333332 111122233799998888776 799
Q ss_pred EEEEEeecCCCcceEEEEEeecCC-C---cee-EEEEEecCCeEEE-EecC-Ce--EEEEECCCCeEEEeee
Q 048458 307 SVYVMKENIEVEHWINLFTVDLRA-Q---FAW-QYLGFGANDEVML-RNDD-GE--LVLYDHKTQEVVQCES 369 (386)
Q Consensus 307 ~iW~l~~~~~~~~W~~~~~i~~~~-~---~~~-~~~~~~~~g~i~l-~~~~-~~--l~~ydl~~~~~~~v~~ 369 (386)
.+|..+.. ..+-+.+.++.... . ..+ .-+.+++||+.+. +++. .. ++..|..+++++.++.
T Consensus 216 ~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 216 DVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred EEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 99999864 35567776665433 1 122 5567778887544 4442 22 6666888888887776
No 70
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.12 E-value=30 Score=35.11 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred CceEEECCeEEEEEEeecCCCCCceEEEEEECCC--ceeeee-cCCCCCCCC-CCccceeEEEEeCCeEEEEEeeCCCCC
Q 048458 224 NSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGD--ETFRYR-KLPDCLYNT-DHIHRERSIGILEKSIALFVSCHTEDN 299 (386)
Q Consensus 224 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~--~~~~~i-~~P~~~~~~-~~~~~~~~L~~~~G~L~lv~~~~~~~~ 299 (386)
..++..+|.+|..... +.|.++|..+ +.|+.- ..|...... ........++..+|++++.....
T Consensus 63 stPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg---- 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA---- 130 (527)
T ss_pred cCCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC----
Confidence 4578899999986655 5799999875 456653 333221100 00001122345567766543321
Q ss_pred CCCCCEEEEEEEeecCCCcceEEEEEeecCCCcee--EEEEEecCCeEEEEec------CCeEEEEECCCCeEEEe
Q 048458 300 TAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAW--QYLGFGANDEVMLRND------DGELVLYDHKTQEVVQC 367 (386)
Q Consensus 300 ~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~--~~~~~~~~g~i~l~~~------~~~l~~ydl~~~~~~~v 367 (386)
.+..|+-...+..|.... ......... .|+.. ++.|++... .+.++.||.+|++..+-
T Consensus 131 -------~l~ALDa~TGk~~W~~~~-~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 -------RLVALDAKTGKVVWSKKN-GDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred -------EEEEEECCCCCEEeeccc-ccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 256666433346677542 111111111 34333 356666532 35699999999996554
No 71
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.67 E-value=60 Score=30.64 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=84.1
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEE-ECCeEEEEEEeecCCCCCceEEEEEECCCceeeee----cCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVH-LNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR----KLPDCL 269 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i----~~P~~~ 269 (386)
.-++.+|+..++.=.... ..-.........-++ =||++=++... . ..+-.++.+|....++..+ -+|.+.
T Consensus 166 ~Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~E--L--~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 TDRIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVNE--L--NSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CceEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEec--c--CCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 456888998877654444 111111111222333 46654444433 1 2223455555555777776 467776
Q ss_pred CCCCCccceeEEEE-eCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEE
Q 048458 270 YNTDHIHRERSIGI-LEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLR 348 (386)
Q Consensus 270 ~~~~~~~~~~~L~~-~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~ 348 (386)
... .....+-. -+|+..+++-... +.|.+..+++++. .=......+.....+ +-+.+.++|++++.
T Consensus 241 ~g~---~~~aaIhis~dGrFLYasNRg~-------dsI~~f~V~~~~g--~L~~~~~~~teg~~P-R~F~i~~~g~~Lia 307 (346)
T COG2706 241 TGT---NWAAAIHISPDGRFLYASNRGH-------DSIAVFSVDPDGG--KLELVGITPTEGQFP-RDFNINPSGRFLIA 307 (346)
T ss_pred CCC---CceeEEEECCCCCEEEEecCCC-------CeEEEEEEcCCCC--EEEEEEEeccCCcCC-ccceeCCCCCEEEE
Confidence 543 23333333 3677777766555 5777777776542 223333333333222 55666777776654
Q ss_pred ec--CCe--EEEEECCCCeEEEeee
Q 048458 349 ND--DGE--LVLYDHKTQEVVQCES 369 (386)
Q Consensus 349 ~~--~~~--l~~ydl~~~~~~~v~~ 369 (386)
.. ++. ++.-|.+|+++..+..
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEeccc
Confidence 32 233 6666899999988765
No 72
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.97 E-value=7.6 Score=22.37 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=20.8
Q ss_pred cCCeEEEEecCCeEEEEECCCCeEEE
Q 048458 341 ANDEVMLRNDDGELVLYDHKTQEVVQ 366 (386)
Q Consensus 341 ~~g~i~l~~~~~~l~~ydl~~~~~~~ 366 (386)
.+|.+++...++.++++|.++++..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 35567777777889999999998765
No 73
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=76.52 E-value=16 Score=22.94 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=31.8
Q ss_pred eeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEee
Q 048458 278 ERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVD 327 (386)
Q Consensus 278 ~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~ 327 (386)
....+..+++|+++++... .....-.+|+++- ....|+.+..++
T Consensus 4 ~~~~~~~~~~iyv~GG~~~----~~~~~~~v~~yd~--~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDG----NNQPTNSVEVYDP--ETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBES----TSSBEEEEEEEET--TTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecc----cCceeeeEEEEeC--CCCEEEEcCCCC
Confidence 4567889999999998655 2335667777774 247899987664
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.11 E-value=69 Score=31.01 Aligned_cols=135 Identities=11% Similarity=0.157 Sum_probs=69.7
Q ss_pred ceEEEEEcCC---CceeecCCCCCCccccCCCceEEECCe-EEEEEEeecCCCCCceEEEEEECCCceee-eecCCCCCC
Q 048458 196 SDIQVYSLKN---NCWRRIQPNVPCIPCLSSNSTVHLNGA-VHWMAIRKESDGTNKDIIVSFDFGDETFR-YRKLPDCLY 270 (386)
Q Consensus 196 ~~~~vyss~~---~~W~~~~~~~p~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~ 270 (386)
..+..++..+ +.|+-+. . |-- ..-++.-||+ ++-++.+ ..|..|+.++..-+ .+..-.
T Consensus 334 r~i~~wdlDgn~~~~W~gvr-~-~~v----~dlait~Dgk~vl~v~~d--------~~i~l~~~e~~~dr~lise~~--- 396 (519)
T KOG0293|consen 334 RTIIMWDLDGNILGNWEGVR-D-PKV----HDLAITYDGKYVLLVTVD--------KKIRLYNREARVDRGLISEEQ--- 396 (519)
T ss_pred CcEEEecCCcchhhcccccc-c-cee----EEEEEcCCCcEEEEEecc--------cceeeechhhhhhhccccccC---
Confidence 4455666655 5888666 2 111 1124555665 4444333 56777777765554 222111
Q ss_pred CCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEE-EEecCC-eEEEE
Q 048458 271 NTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYL-GFGAND-EVMLR 348 (386)
Q Consensus 271 ~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~-~~~~~g-~i~l~ 348 (386)
.....-..-+|+++++..... ++.+|-++| |..+....-.....|..- |++..+ +++..
T Consensus 397 -----~its~~iS~d~k~~LvnL~~q--------ei~LWDl~e------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 397 -----PITSFSISKDGKLALVNLQDQ--------EIHLWDLEE------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred -----ceeEEEEcCCCcEEEEEcccC--------eeEEeecch------hhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 122222344799999998765 899999986 222211111111122222 222222 34444
Q ss_pred e-cCCeEEEEECCCCeEEE
Q 048458 349 N-DDGELVLYDHKTQEVVQ 366 (386)
Q Consensus 349 ~-~~~~l~~ydl~~~~~~~ 366 (386)
. .+++++.||.++++.-.
T Consensus 458 GSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred cCCCceEEEEEccCCceeE
Confidence 3 35678888888877533
No 75
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=75.62 E-value=6.2 Score=25.47 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=28.7
Q ss_pred EEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEE
Q 048458 280 SIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFT 325 (386)
Q Consensus 280 ~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~ 325 (386)
..++.+++|+++++... .......-++|+++- .+..|+++..
T Consensus 6 s~~~~~~kiyv~GG~~~--~~~~~~~~~v~~~d~--~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGT--DNGGSSSNDVWVFDT--ETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCccc--CCCCcccceeEEEEC--CCCEEeecCC
Confidence 45678999999998711 112345678899985 3578998643
No 76
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=75.53 E-value=60 Score=30.43 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=26.7
Q ss_pred CeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCC
Q 048458 231 GAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCL 269 (386)
Q Consensus 231 G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~ 269 (386)
+.+||.... + ..|+.+|..+..-+.++.|...
T Consensus 37 ~~L~w~DI~-~------~~i~r~~~~~g~~~~~~~p~~~ 68 (307)
T COG3386 37 GALLWVDIL-G------GRIHRLDPETGKKRVFPSPGGF 68 (307)
T ss_pred CEEEEEeCC-C------CeEEEecCCcCceEEEECCCCc
Confidence 467898766 4 7899999999999999998765
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.99 E-value=1.2e+02 Score=32.39 Aligned_cols=100 Identities=9% Similarity=0.151 Sum_probs=48.3
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEee
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVD 327 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~ 327 (386)
+.|..+|+.+..-....+.... .....+.-.++...+. ...+ .++.||-+........|..+.++.
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~------~~V~~v~f~~~~~lvs-~s~D-------~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHS------KTVSYVRFVDSSTLVS-SSTD-------NTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred CeEEEEECCCCCccceEecCCC------CCEEEEEEeCCCEEEE-EECC-------CEEEEEeCCCCccccCCcceEEEc
Confidence 6899999976431111111111 1112222235555444 4444 589999886422122455555443
Q ss_pred cCCCceeEEEEEecCCeEEEE-ecCCeEEEEECCCC
Q 048458 328 LRAQFAWQYLGFGANDEVMLR-NDDGELVLYDHKTQ 362 (386)
Q Consensus 328 ~~~~~~~~~~~~~~~g~i~l~-~~~~~l~~ydl~~~ 362 (386)
..... ...+++..++.++.. ..++.+..|+....
T Consensus 706 gh~~~-i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 706 GHTNV-KNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCCC-eeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 22111 134555555544433 34556777776544
No 78
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=74.48 E-value=62 Score=31.93 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEEEecCCeEEEEe-cCCeEEEEECCCCeEEEeee
Q 048458 334 WQYLGFGANDEVMLRN-DDGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 334 ~~~~~~~~~g~i~l~~-~~~~l~~ydl~~~~~~~v~~ 369 (386)
|+-+.+..++ +++.. +...+.+||.++.+++.++-
T Consensus 364 Y~r~~~~~e~-~vigt~dgD~l~iyd~~~~e~kr~e~ 399 (668)
T COG4946 364 YRRIQVDPEG-DVIGTNDGDKLGIYDKDGGEVKRIEK 399 (668)
T ss_pred EEEEccCCcc-eEEeccCCceEEEEecCCceEEEeeC
Confidence 3444444443 44444 44579999999999887753
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=74.29 E-value=63 Score=34.46 Aligned_cols=33 Identities=6% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCceEEECCeEEEEEEeecCCCCCceEEEEEECCC--ceeeee
Q 048458 223 SNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGD--ETFRYR 263 (386)
Q Consensus 223 ~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~--~~~~~i 263 (386)
...++.++|++|..+.. +.++++|..+ +.|+.-
T Consensus 187 e~TPlvvgg~lYv~t~~--------~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH--------NKVIALDAATGKEKWKFD 221 (764)
T ss_pred ccCCEEECCEEEEECCC--------CeEEEEECCCCcEEEEEc
Confidence 45689999999997765 6899999985 456653
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=74.28 E-value=0.79 Score=43.99 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHccCCccccceeeeccccccccccChh
Q 048458 3 KSLPAKFMLETLLKLPVKTLTRFKCVSKQWHSVISNPT 40 (386)
Q Consensus 3 ~~LP~dll~~IL~rLP~~sl~r~~~VcK~W~~liss~~ 40 (386)
-.||.|++..|++.|..+++.|++.+|+.|+-+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 47999999999999999999999999999999877643
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=72.91 E-value=93 Score=30.33 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=69.0
Q ss_pred eEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCE
Q 048458 226 TVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGI 305 (386)
Q Consensus 226 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~ 305 (386)
.++=||.++-.+.. + +.+-.||+.+.. ..-.+|.+-. ....+.-.++.-+|++..++ ..
T Consensus 354 ~fHpDgLifgtgt~-d------~~vkiwdlks~~-~~a~Fpght~------~vk~i~FsENGY~Lat~add-------~~ 412 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTP-D------GVVKIWDLKSQT-NVAKFPGHTG------PVKAISFSENGYWLATAADD-------GS 412 (506)
T ss_pred eEcCCceEEeccCC-C------ceEEEEEcCCcc-ccccCCCCCC------ceeEEEeccCceEEEEEecC-------Ce
Confidence 34457777765544 2 688899999887 5557777431 22233333444456666665 46
Q ss_pred EEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEec-CCeEEEEECCCCeEEEeee
Q 048458 306 CSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRND-DGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 306 i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~-~~~l~~ydl~~~~~~~v~~ 369 (386)
+.+|-|.+.. ...++.+....+-.-+.++..|..+.... +-.++.|+-+++.|.++.-
T Consensus 413 V~lwDLRKl~------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 413 VKLWDLRKLK------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEEEEehhhc------ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 9999887532 22344443322224455666665443332 2357888888999988765
No 82
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.04 E-value=79 Score=28.84 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=66.7
Q ss_pred ECCeEEEEEEeecCCCCCceEEEEEECCCcee-eeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEE
Q 048458 229 LNGAVHWMAIRKESDGTNKDIIVSFDFGDETF-RYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICS 307 (386)
Q Consensus 229 ~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~ 307 (386)
-+|.+|==++. ..+..|..+|+.+++. ...++|+.. ..-.++..+++|+..+.... ..-
T Consensus 54 ~~g~LyESTG~-----yG~S~l~~~d~~tg~~~~~~~l~~~~-------FgEGit~~~d~l~qLTWk~~--------~~f 113 (264)
T PF05096_consen 54 DDGTLYESTGL-----YGQSSLRKVDLETGKVLQSVPLPPRY-------FGEGITILGDKLYQLTWKEG--------TGF 113 (264)
T ss_dssp ETTEEEEEECS-----TTEEEEEEEETTTSSEEEEEE-TTT---------EEEEEEETTEEEEEESSSS--------EEE
T ss_pred CCCEEEEeCCC-----CCcEEEEEEECCCCcEEEEEECCccc-------cceeEEEECCEEEEEEecCC--------eEE
Confidence 46777643332 3457899999998765 466898864 55677888999999998765 443
Q ss_pred EEEEeecCCCcceEEEEEeecCCCceeEEEEEecCC-eEEEEecCCeEEEEECCCCeE-EEeee
Q 048458 308 VYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGAND-EVMLRNDDGELVLYDHKTQEV-VQCES 369 (386)
Q Consensus 308 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g-~i~l~~~~~~l~~ydl~~~~~-~~v~~ 369 (386)
+|-.+ ...++.+++... .+ .-++ .+| .++++..+.+|+..|+++-+. +.+.+
T Consensus 114 ~yd~~------tl~~~~~~~y~~-EG-WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 114 VYDPN------TLKKIGTFPYPG-EG-WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEETT------TTEEEEEEE-SS-S---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EEccc------cceEEEEEecCC-cc-eEEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 33332 355666665543 22 2333 444 577777777899999988653 44555
No 83
>smart00612 Kelch Kelch domain.
Probab=71.70 E-value=12 Score=23.11 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=16.4
Q ss_pred eEEEEEECCCceeeee-cCCC
Q 048458 248 DIIVSFDFGDETFRYR-KLPD 267 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i-~~P~ 267 (386)
..+.+||+.+.+|+.+ ++|.
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeEEEECCCCCeEccCCCCCC
Confidence 6789999999999987 4444
No 84
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.40 E-value=8.9 Score=23.30 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=20.4
Q ss_pred CeEEEEecCCeEEEEECCCCeEEEee
Q 048458 343 DEVMLRNDDGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 343 g~i~l~~~~~~l~~ydl~~~~~~~v~ 368 (386)
|.|++...++.++++|.+|++..+-.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 35677766788999999999987643
No 85
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=70.94 E-value=9.1 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCeEEEEEEeec-CCCCCceEEEEEECCCceeeee-cCCC
Q 048458 230 NGAVHWMAIRKE-SDGTNKDIIVSFDFGDETFRYR-KLPD 267 (386)
Q Consensus 230 ~G~lywl~~~~~-~~~~~~~~il~fD~~~~~~~~i-~~P~ 267 (386)
++.+|-.++. . ........+.+||+.+.+|+.+ ++|.
T Consensus 1 g~~~~vfGG~-~~~~~~~~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 1 GNKLYVFGGY-DDDGGTRLNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CCEEEEECCc-CCCCCCEecCEEEEECCCCEEEECCCCCC
Confidence 3556666555 3 1223336799999999999988 4444
No 86
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=69.91 E-value=83 Score=28.18 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=57.2
Q ss_pred eEEEEEECCCcee-eeecCCC-CCCCCCCccceeEEE-EeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEE
Q 048458 248 DIIVSFDFGDETF-RYRKLPD-CLYNTDHIHRERSIG-ILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLF 324 (386)
Q Consensus 248 ~~il~fD~~~~~~-~~i~~P~-~~~~~~~~~~~~~L~-~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~ 324 (386)
+.|..+|+.+.+. ..+.... ...... .....+. .-+|+..++..... +++.+|-++ .|....
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~s~dg~~~~~~~~~~-------~~i~v~d~~------~~~~~~ 243 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEA--VQPVGIKLTKDGKTAFVALGPA-------NRVAVVDAK------TYEVLD 243 (300)
T ss_pred CEEEEEEcCcceeeeeeeeccccccccc--CCccceEECCCCCEEEEEcCCC-------CeEEEEECC------CCcEEE
Confidence 6789999987653 3332211 000000 0111222 23566544444333 478888554 244443
Q ss_pred EeecCCCceeEEEEEecCCeEEEE-e-cCCeEEEEECCCCeE-EEeeecCc
Q 048458 325 TVDLRAQFAWQYLGFGANDEVMLR-N-DDGELVLYDHKTQEV-VQCESSNW 372 (386)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~g~i~l~-~-~~~~l~~ydl~~~~~-~~v~~~~~ 372 (386)
.+.... ....+++.++|+.++. . .++.+..||+++++. +.+..+..
T Consensus 244 ~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 244 YLLVGQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred EEEeCC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc
Confidence 332221 1145667778865444 3 356799999999994 66777544
No 87
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=69.18 E-value=92 Score=28.43 Aligned_cols=140 Identities=12% Similarity=0.069 Sum_probs=75.1
Q ss_pred ccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCc-eeeeecCCCCCCCC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDE-TFRYRKLPDCLYNT 272 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~~ 272 (386)
..+.+..|+..++.=.... .+|.. .+.-..+.+++.+|-++.. . +..+.||..+- .-..++.|.
T Consensus 66 G~S~l~~~d~~tg~~~~~~-~l~~~--~FgEGit~~~d~l~qLTWk-~------~~~f~yd~~tl~~~~~~~y~~----- 130 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSV-PLPPR--YFGEGITILGDKLYQLTWK-E------GTGFVYDPNTLKKIGTFPYPG----- 130 (264)
T ss_dssp TEEEEEEEETTTSSEEEEE-E-TTT----EEEEEEETTEEEEEESS-S------SEEEEEETTTTEEEEEEE-SS-----
T ss_pred CcEEEEEEECCCCcEEEEE-ECCcc--ccceeEEEECCEEEEEEec-C------CeEEEEccccceEEEEEecCC-----
Confidence 4678889999987533222 23322 2322345789999999988 4 78999999863 233345553
Q ss_pred CCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEe-----cCCeEEE
Q 048458 273 DHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFG-----ANDEVML 347 (386)
Q Consensus 273 ~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-----~~g~i~l 347 (386)
....|+..+..|.+--++. + |+.++- +....+.+|...... .|+..- -+|.|+-
T Consensus 131 ----EGWGLt~dg~~Li~SDGS~---------~--L~~~dP----~~f~~~~~i~V~~~g--~pv~~LNELE~i~G~IyA 189 (264)
T PF05096_consen 131 ----EGWGLTSDGKRLIMSDGSS---------R--LYFLDP----ETFKEVRTIQVTDNG--RPVSNLNELEYINGKIYA 189 (264)
T ss_dssp ----S--EEEECSSCEEEE-SSS---------E--EEEE-T----TT-SEEEEEE-EETT--EE---EEEEEEETTEEEE
T ss_pred ----cceEEEcCCCEEEEECCcc---------c--eEEECC----cccceEEEEEEEECC--EECCCcEeEEEEcCEEEE
Confidence 3345565566655544432 3 455552 234445555433211 222111 1577776
Q ss_pred Eec-CCeEEEEECCCCeEEE-eee
Q 048458 348 RND-DGELVLYDHKTQEVVQ-CES 369 (386)
Q Consensus 348 ~~~-~~~l~~ydl~~~~~~~-v~~ 369 (386)
... ...++..|++|+++.. +..
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEh
Confidence 554 3569999999999755 344
No 88
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=68.83 E-value=10 Score=24.23 Aligned_cols=22 Identities=23% Similarity=0.835 Sum_probs=14.0
Q ss_pred ccceEEEEEcCCCceeecCCCCC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVP 216 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p 216 (386)
....+++|+..+++|+.++ .+|
T Consensus 27 ~~~d~~~~d~~~~~W~~~~-~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRLP-SMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE---SS-
T ss_pred ccCCEEEEECCCCEEEECC-CCC
Confidence 4567899999999999987 554
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.17 E-value=1.3e+02 Score=29.70 Aligned_cols=151 Identities=13% Similarity=0.173 Sum_probs=82.3
Q ss_pred cceEEEEEcCCCcee-ecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCcee-eee---cCCCCC
Q 048458 195 FSDIQVYSLKNNCWR-RIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETF-RYR---KLPDCL 269 (386)
Q Consensus 195 ~~~~~vyss~~~~W~-~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~-~~i---~~P~~~ 269 (386)
..++++|++.+.+=+ ... .. . .........-||.|...+.. .+.+-+||..+... +.+ +.|..
T Consensus 47 S~rvqly~~~~~~~~k~~s-rF--k-~~v~s~~fR~DG~LlaaGD~-------sG~V~vfD~k~r~iLR~~~ah~apv~- 114 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFS-RF--K-DVVYSVDFRSDGRLLAAGDE-------SGHVKVFDMKSRVILRQLYAHQAPVH- 114 (487)
T ss_pred ccEEEEEecchhhhhhhHH-hh--c-cceeEEEeecCCeEEEccCC-------cCcEEEeccccHHHHHHHhhccCcee-
Confidence 567899998875421 122 10 0 11111234457999887765 27899999655221 111 22322
Q ss_pred CCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCcee-EEEEEec-CCeEEE
Q 048458 270 YNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAW-QYLGFGA-NDEVML 347 (386)
Q Consensus 270 ~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~-~g~i~l 347 (386)
.......++.+ ++.+.++ ....+|.+.+. . . +. .+..+-+| +...+.+ ++.|++
T Consensus 115 --------~~~f~~~d~t~-l~s~sDd-------~v~k~~d~s~a---~--v-~~--~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 115 --------VTKFSPQDNTM-LVSGSDD-------KVVKYWDLSTA---Y--V-QA--ELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred --------EEEecccCCeE-EEecCCC-------ceEEEEEcCCc---E--E-EE--EecCCcceeEeeccccCCCeEEE
Confidence 12222334444 4444444 58999999851 1 2 23 33334444 5566655 344666
Q ss_pred Ee-cCCeEEEEECCCCeEEEeee--cCceeeeeeeecc
Q 048458 348 RN-DDGELVLYDHKTQEVVQCES--SNWVANAVIYTES 382 (386)
Q Consensus 348 ~~-~~~~l~~ydl~~~~~~~v~~--~~~~~~~~~y~~s 382 (386)
.. +++.+-.||.++.+-+..++ +.. .+..+|.||
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~elnhg~p-Ve~vl~lps 207 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELNHGCP-VESVLALPS 207 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEecCCCc-eeeEEEcCC
Confidence 54 46779999999986444444 444 556666665
No 90
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=68.00 E-value=9.7 Score=37.57 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=58.9
Q ss_pred ccccceEEEEEcCCCceeecCCCCCCccccCCCceEEEC--CeEEEEEEeecC----CCCCceEEEEEECCCceeeeecC
Q 048458 192 RREFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLN--GAVHWMAIRKES----DGTNKDIIVSFDFGDETFRYRKL 265 (386)
Q Consensus 192 ~~~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~--G~lywl~~~~~~----~~~~~~~il~fD~~~~~~~~i~~ 265 (386)
......++.|+-+.+.|..+......+....-+..|.-- .++|-|+...+. .-+.+..+-.||..+..|..+..
T Consensus 284 ~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~ 363 (723)
T KOG2437|consen 284 TQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSE 363 (723)
T ss_pred chhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecc
Confidence 355667899999999998886211111111122233322 367777655322 12345789999999999999965
Q ss_pred CCCCCCCCCccceeEEEEeC--CeEEEEEeeCC
Q 048458 266 PDCLYNTDHIHRERSIGILE--KSIALFVSCHT 296 (386)
Q Consensus 266 P~~~~~~~~~~~~~~L~~~~--G~L~lv~~~~~ 296 (386)
-....+....-..-..++.+ |.+|+.+++.-
T Consensus 364 dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 364 DTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred cccccCCcceeecceeeEecCcceEEEecCeec
Confidence 44322211001222334444 44888877654
No 91
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=67.73 E-value=1.1e+02 Score=28.60 Aligned_cols=97 Identities=5% Similarity=-0.086 Sum_probs=52.9
Q ss_pred eEEEEEECCC-ceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEe
Q 048458 248 DIIVSFDFGD-ETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTV 326 (386)
Q Consensus 248 ~~il~fD~~~-~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i 326 (386)
+.|.+||+.+ .+...++.-..... ..... ..-+|+..++..... ..+.+|.+++ +.+++...++
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~----~~~l~-~spd~~~lyv~~~~~-------~~i~~~~~~~---~g~l~~~~~~ 76 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQ----VQPMV-ISPDKRHLYVGVRPE-------FRVLSYRIAD---DGALTFAAES 76 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCC----CccEE-ECCCCCEEEEEECCC-------CcEEEEEECC---CCceEEeeee
Confidence 6788999864 34444421111110 11121 122566544444333 5788898874 2457666666
Q ss_pred ecCCCceeEEEEEecCCeEEE-Eec-CCeEEEEECCC
Q 048458 327 DLRAQFAWQYLGFGANDEVML-RND-DGELVLYDHKT 361 (386)
Q Consensus 327 ~~~~~~~~~~~~~~~~g~i~l-~~~-~~~l~~ydl~~ 361 (386)
...... ..++++++|+.++ ... ++.+.+||+++
T Consensus 77 ~~~~~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 77 PLPGSP--THISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCc--eEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 543321 5677778786444 433 45688898874
No 92
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=67.33 E-value=66 Score=32.26 Aligned_cols=31 Identities=13% Similarity=0.394 Sum_probs=24.0
Q ss_pred CceEEECCeEEEEEEeecCCCCCceEEEEEECCCc--eeee
Q 048458 224 NSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDE--TFRY 262 (386)
Q Consensus 224 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~--~~~~ 262 (386)
..++..+|.+|..... +.+.++|..+. .|+.
T Consensus 55 ~sPvv~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTSH--------SALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCCC--------CcEEEEECCCChhhcee
Confidence 4579999999987655 68999998754 5664
No 93
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=67.32 E-value=12 Score=28.96 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=28.8
Q ss_pred EEEEccccc-cceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecCCCCeEEEEEEE
Q 048458 114 MFVWNPSTR-KYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVH 182 (386)
Q Consensus 114 ~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 182 (386)
+++++|.|| .|...-+ .. ..+ .+-+|+..+.|+||.+..
T Consensus 13 V~~yd~~tKk~WvPs~~--~~---------------------------~~V-~~y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 13 VFQIDPKTKKNWIPASK--HA---------------------------VTV-SYFYDSTRNVYRIISVGG 52 (111)
T ss_pred EEEECCCCcceeEeCCC--Cc---------------------------eeE-EEEecCCCcEEEEEEecC
Confidence 899999996 7874432 11 235 777899999999999643
No 94
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=66.30 E-value=7.5 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=18.8
Q ss_pred CceEEECCeEEEEEEeecCCCCCceEEEEEECCC
Q 048458 224 NSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGD 257 (386)
Q Consensus 224 ~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~ 257 (386)
.+++..+|.+|.-+.+ +.+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~d--------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD--------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT--------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC--------CEEEEEeCCC
Confidence 3468889999988766 7999999875
No 95
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=65.59 E-value=1.2e+02 Score=28.31 Aligned_cols=122 Identities=8% Similarity=0.046 Sum_probs=63.4
Q ss_pred ECCeEEEEEEeecCCCCCceEEEEEECC--Cceeeee----cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCC
Q 048458 229 LNGAVHWMAIRKESDGTNKDIIVSFDFG--DETFRYR----KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAG 302 (386)
Q Consensus 229 ~~G~lywl~~~~~~~~~~~~~il~fD~~--~~~~~~i----~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~ 302 (386)
=+|...+.+.. . .+.|.+||+. ++++..+ .+|....... ......+ .-+|+..++.....
T Consensus 184 pdg~~lyv~~~-~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~i~~-~pdg~~lyv~~~~~------ 249 (330)
T PRK11028 184 PNQQYAYCVNE-L-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR-WAADIHI-TPDGRHLYACDRTA------ 249 (330)
T ss_pred CCCCEEEEEec-C-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc-cceeEEE-CCCCCEEEEecCCC------
Confidence 35555555543 2 1678888886 3344333 2344321110 0111222 22566555543333
Q ss_pred CCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-EEEEec-CCeEEEEE--CCCCeEEEeee
Q 048458 303 LGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-VMLRND-DGELVLYD--HKTQEVVQCES 369 (386)
Q Consensus 303 ~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i~l~~~-~~~l~~yd--l~~~~~~~v~~ 369 (386)
+.+.+|.++..+ ..++.+..++..... +-+.+.++|+ ++.... ++.+..|+ .+++.++.++.
T Consensus 250 -~~I~v~~i~~~~--~~~~~~~~~~~~~~p--~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 250 -SLISVFSVSEDG--SVLSFEGHQPTETQP--RGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred -CeEEEEEEeCCC--CeEEEeEEEeccccC--CceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 689999997533 456666666543211 3467777885 444443 44566665 46777766643
No 96
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=63.32 E-value=72 Score=29.93 Aligned_cols=85 Identities=13% Similarity=0.283 Sum_probs=47.2
Q ss_pred CceEEE-CCeEEEEEEeecCCCCCceEEEEEECC-Cceeeee-cCCCCCCCCCCccceeEEEEe-CCeEEEEEeeCCCCC
Q 048458 224 NSTVHL-NGAVHWMAIRKESDGTNKDIIVSFDFG-DETFRYR-KLPDCLYNTDHIHRERSIGIL-EKSIALFVSCHTEDN 299 (386)
Q Consensus 224 ~~~v~~-~G~lywl~~~~~~~~~~~~~il~fD~~-~~~~~~i-~~P~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~ 299 (386)
.++|.. ||+|-+-..-...+......++.|-.. .+.|..- -+|+.. +..+.++|. +|+|.|+..|.+
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~g------C~~psv~EWe~gkLlM~~~c~~--- 194 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAG------CSDPSVVEWEDGKLLMMTACDD--- 194 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT-------EEEEEEEE-TTEEEEEEE-TT---
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCC------cceEEEEeccCCeeEEEEeccc---
Confidence 346655 888777665422222113677888776 6788765 333322 688999999 899999999987
Q ss_pred CCCCCEEEEEEEeecCCCcceEEE
Q 048458 300 TAGLGICSVYVMKENIEVEHWINL 323 (386)
Q Consensus 300 ~~~~~~i~iW~l~~~~~~~~W~~~ 323 (386)
..-.|+.-.|-| ..|++.
T Consensus 195 ----g~rrVYeS~DmG--~tWtea 212 (310)
T PF13859_consen 195 ----GRRRVYESGDMG--TTWTEA 212 (310)
T ss_dssp ----S---EEEESSTT--SS-EE-
T ss_pred ----ceEEEEEEcccc--eehhhc
Confidence 566777776633 679974
No 97
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=62.55 E-value=1.2e+02 Score=27.29 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=71.4
Q ss_pred cceEEEEEcCCC----ceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCC
Q 048458 195 FSDIQVYSLKNN----CWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLY 270 (386)
Q Consensus 195 ~~~~~vyss~~~----~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~ 270 (386)
...+++|+-.|+ .||-..... ........++|.+.|.+ + ..+-++|-.+..+..++.-.+..
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqV-NtV~fNeesSVv~Sgsf-------D------~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQV-NTVRFNEESSVVASGSF-------D------SSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred CceEEEEEcccCeeeeeccccccee-eEEEecCcceEEEeccc-------c------ceeEEEEcccCCCCccchhhhhc
Confidence 567888998885 566444122 11223344567776664 2 68999999999999887665543
Q ss_pred CCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-EEEEe
Q 048458 271 NTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-VMLRN 349 (386)
Q Consensus 271 ~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i~l~~ 349 (386)
+ ...-+...+...+.+... .+++.+-+.. |. . ..+.. ..+...+.+.+++. .+...
T Consensus 146 D------~V~Si~v~~heIvaGS~D--------GtvRtydiR~-G~-l------~sDy~-g~pit~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 146 D------GVSSIDVAEHEIVAGSVD--------GTVRTYDIRK-GT-L------SSDYF-GHPITSVSFSKDGNCSLASS 202 (307)
T ss_pred C------ceeEEEecccEEEeeccC--------CcEEEEEeec-ce-e------ehhhc-CCcceeEEecCCCCEEEEee
Confidence 2 222233445554444433 3555554442 10 0 00000 11113455666664 33333
Q ss_pred cCCeEEEEECCCCeE
Q 048458 350 DDGELVLYDHKTQEV 364 (386)
Q Consensus 350 ~~~~l~~ydl~~~~~ 364 (386)
-++-+...|-+|+++
T Consensus 203 l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 203 LDSTLRLLDKETGKL 217 (307)
T ss_pred ccceeeecccchhHH
Confidence 345577777777765
No 98
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=62.32 E-value=26 Score=27.34 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=28.7
Q ss_pred EEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeeeeecCCCCeEEEEEEE
Q 048458 114 MFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFGYDHRTSDFKILLIVH 182 (386)
Q Consensus 114 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 182 (386)
+++.||.|+.|..+-..+.. ...+ .+.+++..+.|+|++...
T Consensus 11 Vm~~d~~tk~W~P~~~~~~~--------------------------ls~V-~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 11 VMVYDDSNKKWVPAGGGSQG--------------------------FSRV-QIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred eeEEcCCCCcEEcCCCCCCC--------------------------cceE-EEEEcCCCCEEEEEEeec
Confidence 78999999997644321111 1335 677888889999998653
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=60.49 E-value=1.4e+02 Score=27.65 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCeEEEEEEeecCCCCCceEEEEEECC---CceeeeecCCCCCCCCCCccceeEEEEe--CCeEEEEEeeCCCCCCCCCC
Q 048458 230 NGAVHWMAIRKESDGTNKDIIVSFDFG---DETFRYRKLPDCLYNTDHIHRERSIGIL--EKSIALFVSCHTEDNTAGLG 304 (386)
Q Consensus 230 ~G~lywl~~~~~~~~~~~~~il~fD~~---~~~~~~i~~P~~~~~~~~~~~~~~L~~~--~G~L~lv~~~~~~~~~~~~~ 304 (386)
.|.++.++.. . ..|--||+. .+-|+.+.++... ..+..-.+. +|+..|++....
T Consensus 151 ~GLifA~~~~-~------~~IkLyD~Rs~dkgPF~tf~i~~~~------~~ew~~l~FS~dGK~iLlsT~~s-------- 209 (311)
T KOG1446|consen 151 EGLIFALANG-S------ELIKLYDLRSFDKGPFTTFSITDND------EAEWTDLEFSPDGKSILLSTNAS-------- 209 (311)
T ss_pred CCcEEEEecC-C------CeEEEEEecccCCCCceeEccCCCC------ccceeeeEEcCCCCEEEEEeCCC--------
Confidence 4677776665 2 488889986 4567777666422 122233333 688777777554
Q ss_pred EEEEEEEeecCCCcceEEEEEeecCCCc-ee-EEEEEecCCeEEEEe-cCCeEEEEECCCCeEE
Q 048458 305 ICSVYVMKENIEVEHWINLFTVDLRAQF-AW-QYLGFGANDEVMLRN-DDGELVLYDHKTQEVV 365 (386)
Q Consensus 305 ~i~iW~l~~~~~~~~W~~~~~i~~~~~~-~~-~~~~~~~~g~i~l~~-~~~~l~~ydl~~~~~~ 365 (386)
. +..++.+.. . .+.++...... .. .-..+.+|++.++.. +++.+.+||+++++-.
T Consensus 210 ~--~~~lDAf~G--~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 210 F--IYLLDAFDG--T--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred c--EEEEEccCC--c--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 1 345554432 1 44555443311 11 234556888877765 4578999999888743
No 100
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=60.11 E-value=1.3e+02 Score=27.07 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=80.5
Q ss_pred CceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCce-eeeecCCCCCCCCC-----Ccccee
Q 048458 206 NCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDET-FRYRKLPDCLYNTD-----HIHRER 279 (386)
Q Consensus 206 ~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~-----~~~~~~ 279 (386)
+.|...- .+|.... ...-|..+|.+|..... . ..|+-||+.++. -....+|....... .+....
T Consensus 56 ~~~~~~~-~lp~~~~--gTg~VVynGs~yynk~~-t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdi 125 (249)
T KOG3545|consen 56 GRKAEKY-RLPYSWD--GTGHVVYNGSLYYNKAG-T------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDI 125 (249)
T ss_pred cCcceEE-eCCCCcc--ccceEEEcceEEeeccC-C------cceEEEEeecceeeeeeeccccccCCCcccccCCCccc
Confidence 3444444 4555532 33469999999987654 2 689999999853 34446665433211 125567
Q ss_pred EEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeec--CCCcceEEEEEeecCCCceeEEEEEecCCeEEEEec----CCe
Q 048458 280 SIGILEKSIALFVSCHTEDNTAGLGICSVYVMKEN--IEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRND----DGE 353 (386)
Q Consensus 280 ~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~----~~~ 353 (386)
.+++....|-++....+ ....+.|-+|+.. .....|.-- ++...... ..+. .|.++.... +..
T Consensus 126 D~avDE~GLWviYat~~-----~~g~iv~skLdp~tl~~e~tW~T~--~~k~~~~~-aF~i---CGvLY~v~S~~~~~~~ 194 (249)
T KOG3545|consen 126 DLAVDENGLWVIYATPE-----NAGTIVLSKLDPETLEVERTWNTT--LPKRSAGN-AFMI---CGVLYVVHSYNCTHTQ 194 (249)
T ss_pred cceecccceeEEecccc-----cCCcEEeeccCHHHhheeeeeccc--cCCCCcCc-eEEE---eeeeEEEeccccCCce
Confidence 88888888888776554 2255666777742 133456421 11111111 1111 133444321 223
Q ss_pred E-EEEECCCCeEEEeee
Q 048458 354 L-VLYDHKTQEVVQCES 369 (386)
Q Consensus 354 l-~~ydl~~~~~~~v~~ 369 (386)
+ ++||..+++-+.+.+
T Consensus 195 i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 195 ISYAYDTTTGTQERIDL 211 (249)
T ss_pred EEEEEEcCCCceecccc
Confidence 3 799999999877766
No 101
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=59.40 E-value=25 Score=26.29 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.0
Q ss_pred CeEEEEECCCCeEEEe
Q 048458 352 GELVLYDHKTQEVVQC 367 (386)
Q Consensus 352 ~~l~~ydl~~~~~~~v 367 (386)
++|+.||++|++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 5699999999998765
No 102
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=58.84 E-value=19 Score=35.56 Aligned_cols=138 Identities=9% Similarity=0.068 Sum_probs=80.4
Q ss_pred CCCceEEECC--eEEEEEEeecCCCCCceEEEEEECCCceeeeec----CCCCCCCCCCccceeEEEEeCCeEEEEEeeC
Q 048458 222 SSNSTVHLNG--AVHWMAIRKESDGTNKDIIVSFDFGDETFRYRK----LPDCLYNTDHIHRERSIGILEKSIALFVSCH 295 (386)
Q Consensus 222 ~~~~~v~~~G--~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~ 295 (386)
..+..|+..| .+|-.++..+.. .-...-+|......|..+. .|.... +-+..+-+.+.+|++.+-.-
T Consensus 262 gGHQMV~~~~~~CiYLYGGWdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs-----CHRMVid~S~~KLYLlG~Y~ 334 (723)
T KOG2437|consen 262 GGHQMVIDVQTECVYLYGGWDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARS-----CHRMVIDISRRKLYLLGRYL 334 (723)
T ss_pred CcceEEEeCCCcEEEEecCcccch--hHHHHHhhcCCcceeEEeecCCCCCcchh-----hhhhhhhhhHhHHhhhhhcc
Confidence 3456788888 888887662211 1134678888999999984 444332 22333334456787776433
Q ss_pred CC-CCCCCCCEEEEEEEeecCCCcceEEEEEeecCC----Ccee-EEEEEecCC-eEEEEec---------CCeEEEEEC
Q 048458 296 TE-DNTAGLGICSVYVMKENIEVEHWINLFTVDLRA----QFAW-QYLGFGAND-EVMLRND---------DGELVLYDH 359 (386)
Q Consensus 296 ~~-~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~----~~~~-~~~~~~~~g-~i~l~~~---------~~~l~~ydl 359 (386)
.. .++.....-++|+.|- .++.|+..- ++... ..-| .-+++..+. -|++..+ .+.|++||.
T Consensus 335 ~sS~r~~~s~RsDfW~FDi--~~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~ 411 (723)
T KOG2437|consen 335 DSSVRNSKSLRSDFWRFDI--DTNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNC 411 (723)
T ss_pred ccccccccccccceEEEec--CCceeEEec-ccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEec
Confidence 22 2334456778999995 357899752 22211 1112 345555544 3444221 134999999
Q ss_pred CCCeEEEeee
Q 048458 360 KTQEVVQCES 369 (386)
Q Consensus 360 ~~~~~~~v~~ 369 (386)
+.+.|+.+..
T Consensus 412 ~~~~w~~l~e 421 (723)
T KOG2437|consen 412 QCQTWKLLRE 421 (723)
T ss_pred CCccHHHHHH
Confidence 9999976643
No 103
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=57.53 E-value=2.1e+02 Score=28.50 Aligned_cols=142 Identities=14% Similarity=0.079 Sum_probs=78.5
Q ss_pred eEEEEEcCCCceeecCCCCCCcc----ccCCC------ceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCC
Q 048458 197 DIQVYSLKNNCWRRIQPNVPCIP----CLSSN------STVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLP 266 (386)
Q Consensus 197 ~~~vyss~~~~W~~~~~~~p~~~----~~~~~------~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P 266 (386)
.+++|+..+++=+.++..+|..- .-+.. .=..++|..+.+... +....++....-.-.+.-+
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR--------GkaFi~~~~~~~~iqv~~~ 359 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR--------GKAFIMRPWDGYSIQVGKK 359 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec--------CcEEEECCCCCeeEEcCCC
Confidence 46778888877776664455431 00001 124567888888776 5667776655443333323
Q ss_pred CCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-E
Q 048458 267 DCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-V 345 (386)
Q Consensus 267 ~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i 345 (386)
..+ ...++...... ++.+..+ ...+.|+-.+. . +..++... ......+++.++|+ +
T Consensus 360 ~~V-------rY~r~~~~~e~--~vigt~d------gD~l~iyd~~~--~-----e~kr~e~~-lg~I~av~vs~dGK~~ 416 (668)
T COG4946 360 GGV-------RYRRIQVDPEG--DVIGTND------GDKLGIYDKDG--G-----EVKRIEKD-LGNIEAVKVSPDGKKV 416 (668)
T ss_pred Cce-------EEEEEccCCcc--eEEeccC------CceEEEEecCC--c-----eEEEeeCC-ccceEEEEEcCCCcEE
Confidence 222 23333444442 3333222 15788776653 1 11122211 11114677788886 6
Q ss_pred EEEecCCeEEEEECCCCeEEEeee
Q 048458 346 MLRNDDGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 346 ~l~~~~~~l~~ydl~~~~~~~v~~ 369 (386)
++.++.-+++++|+++++.+.+.-
T Consensus 417 vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 417 VVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred EEEcCceEEEEEEecCCCeeEecc
Confidence 666666679999999999988864
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=56.11 E-value=2.1e+02 Score=28.07 Aligned_cols=106 Identities=11% Similarity=0.187 Sum_probs=61.9
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCC-ceeeeecCCCCCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGD-ETFRYRKLPDCLYNTD 273 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~-~~~~~i~~P~~~~~~~ 273 (386)
...+.||++.++. .+. ..|.. ...-..+.+...=|||+...+ .+.|..+|+.. +.+..++++....
T Consensus 368 d~~vkiwdlks~~--~~a-~Fpgh--t~~vk~i~FsENGY~Lat~ad-----d~~V~lwDLRKl~n~kt~~l~~~~~--- 434 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVA-KFPGH--TGPVKAISFSENGYWLATAAD-----DGSVKLWDLRKLKNFKTIQLDEKKE--- 434 (506)
T ss_pred CceEEEEEcCCcc--ccc-cCCCC--CCceeEEEeccCceEEEEEec-----CCeEEEEEehhhcccceeecccccc---
Confidence 3456666666654 333 23322 222235677777899987622 25699999974 4567777776531
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeec
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDL 328 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~ 328 (386)
....-...-|....+. . ..+.|+..+. ..++|+++.....
T Consensus 435 ---v~s~~fD~SGt~L~~~---g-------~~l~Vy~~~k--~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 435 ---VNSLSFDQSGTYLGIA---G-------SDLQVYICKK--KTKSWTEIKELAD 474 (506)
T ss_pred ---ceeEEEcCCCCeEEee---c-------ceeEEEEEec--ccccceeeehhhh
Confidence 1111112235554444 2 5788888885 4578999876543
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=55.85 E-value=40 Score=32.98 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=39.7
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-EEEEecCC-eEEEEECCCCeEEEeee
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-VMLRNDDG-ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i~l~~~~~-~l~~ydl~~~~~~~v~~ 369 (386)
..++|+.++.- .+ .++..|.+... +.+-..+.++|. +++....+ -++.|||++.++.++.-
T Consensus 235 ~~lrifqvDGk-~N---~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~ 297 (514)
T KOG2055|consen 235 GTLRIFQVDGK-VN---PKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP 297 (514)
T ss_pred CcEEEEEecCc-cC---hhheeeeeccC-ccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence 48888888842 11 25555655441 124456667785 66655434 39999999999998875
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=54.05 E-value=1.6e+02 Score=26.22 Aligned_cols=111 Identities=12% Similarity=0.008 Sum_probs=53.9
Q ss_pred ECCeEEEEEEeecCCCCCceEEEEEECCCceeee-ecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEE
Q 048458 229 LNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRY-RKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICS 307 (386)
Q Consensus 229 ~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~ 307 (386)
-+|.+.+.+.. . ...+..+|..+..... +..+.. ..... ..-+|+..++..... ..+.
T Consensus 124 ~dg~~l~~~~~-~-----~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~-~s~dg~~l~~~~~~~-------~~v~ 182 (300)
T TIGR03866 124 PDGKIVVNTSE-T-----TNMAHFIDTKTYEIVDNVLVDQR-------PRFAE-FTADGKELWVSSEIG-------GTVS 182 (300)
T ss_pred CCCCEEEEEec-C-----CCeEEEEeCCCCeEEEEEEcCCC-------ccEEE-ECCCCCEEEEEcCCC-------CEEE
Confidence 35666555543 2 1346667887654432 221111 11111 122566555554333 5888
Q ss_pred EEEEeecCCCcceEEEEEeecCC----Ccee--EEEEEecCCeE-EEEe-cCCeEEEEECCCCeEEE
Q 048458 308 VYVMKENIEVEHWINLFTVDLRA----QFAW--QYLGFGANDEV-MLRN-DDGELVLYDHKTQEVVQ 366 (386)
Q Consensus 308 iW~l~~~~~~~~W~~~~~i~~~~----~~~~--~~~~~~~~g~i-~l~~-~~~~l~~ydl~~~~~~~ 366 (386)
+|-++.. ....++.... .... ..+++.++++. ++.. .+..+..||+++++...
T Consensus 183 i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 183 VIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred EEEcCcc------eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9987641 1222222111 0111 23556677764 4433 34469999999877643
No 107
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=53.72 E-value=1e+02 Score=30.08 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=38.7
Q ss_pred eEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEE
Q 048458 232 AVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVM 311 (386)
Q Consensus 232 ~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l 311 (386)
++|..-.. . ..+..++.||+-+.+.. .|-.. +..-.--+|+|++..... +++....-++||..
T Consensus 321 vLYvF~~~-~---~g~~~Ll~YN~I~k~v~---tPi~c--------hG~alf~DG~l~~fra~~--~EptrvHp~QiWqT 383 (448)
T PF12458_consen 321 VLYVFYAR-E---EGRYLLLPYNLIRKEVA---TPIIC--------HGYALFEDGRLVYFRAEG--DEPTRVHPMQIWQT 383 (448)
T ss_pred EEEEEEEC-C---CCcEEEEechhhhhhhc---CCeec--------cceeEecCCEEEEEecCC--CCcceeccceeecC
Confidence 56665544 2 23478999998775543 33222 112233489999988642 45666777999975
Q ss_pred e
Q 048458 312 K 312 (386)
Q Consensus 312 ~ 312 (386)
-
T Consensus 384 P 384 (448)
T PF12458_consen 384 P 384 (448)
T ss_pred C
Confidence 3
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=52.65 E-value=1.2e+02 Score=28.21 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=42.0
Q ss_pred CeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCC-eEEEEecCCeEEEEECCCCeE
Q 048458 286 KSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGAND-EVMLRNDDGELVLYDHKTQEV 364 (386)
Q Consensus 286 G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g-~i~l~~~~~~l~~ydl~~~~~ 364 (386)
+-|..++..+ +++++|.+++.+.... +....+.. +.--.+..++| +|+...-+..+-.||+++++.
T Consensus 40 ~~~~~A~SWD--------~tVR~wevq~~g~~~~---ka~~~~~~--PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 40 DNLLAAGSWD--------GTVRIWEVQNSGQLVP---KAQQSHDG--PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred CceEEecccC--------CceEEEEEecCCcccc---hhhhccCC--CeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 4444455555 5999999997542211 11111111 10122334566 566665567799999999999
Q ss_pred EEeee
Q 048458 365 VQCES 369 (386)
Q Consensus 365 ~~v~~ 369 (386)
..+..
T Consensus 107 ~~v~~ 111 (347)
T KOG0647|consen 107 SQVAA 111 (347)
T ss_pred eeeee
Confidence 99887
No 109
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=51.80 E-value=1.8e+02 Score=26.10 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=74.3
Q ss_pred EEEEEcCC-CceeecCCCCCCccccCCCceEE---ECCeEEEEEEeecCCCCCceEEEEEECC-Cceeeee---cCCCCC
Q 048458 198 IQVYSLKN-NCWRRIQPNVPCIPCLSSNSTVH---LNGAVHWMAIRKESDGTNKDIIVSFDFG-DETFRYR---KLPDCL 269 (386)
Q Consensus 198 ~~vyss~~-~~W~~~~~~~p~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~~~~il~fD~~-~~~~~~i---~~P~~~ 269 (386)
+.+|+... .+|+... .++..... ..+.. -+|.+|.+... . ... ...++.-.. .++|+.. .+|...
T Consensus 136 ~~~~S~D~G~tW~~~~-~~~~~~~~--~e~~~~~~~dG~l~~~~R~-~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~ 208 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGS-PIPDGQGE--CEPSIVELPDGRLLAVFRT-E-GND--DIYISRSTDGGRTWSPPQPTNLPNPN 208 (275)
T ss_dssp EEEEESSTTSSEEEEE-ECECSEEE--EEEEEEEETTSEEEEEEEE-C-SST--EEEEEEESSTTSS-EEEEEEECSSCC
T ss_pred EEEEeCCCCceeeccc-cccccCCc--ceeEEEECCCCcEEEEEEc-c-CCC--cEEEEEECCCCCcCCCceecccCccc
Confidence 34455544 5798877 33211011 12222 47899988876 3 222 344444444 5578764 445432
Q ss_pred CCCCCccceeEEEEe-CCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCC--CceeEEEEEecCCeEE
Q 048458 270 YNTDHIHRERSIGIL-EKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRA--QFAWQYLGFGANDEVM 346 (386)
Q Consensus 270 ~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~--~~~~~~~~~~~~g~i~ 346 (386)
....+..+ +|++.++..... +...+.|+.-++. .+.|.....|.... ...|.-+...+||+|.
T Consensus 209 -------~~~~~~~~~~g~~~~~~~~~~-----~r~~l~l~~S~D~--g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~ 274 (275)
T PF13088_consen 209 -------SSISLVRLSDGRLLLVYNNPD-----GRSNLSLYVSEDG--GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLY 274 (275)
T ss_dssp -------EEEEEEECTTSEEEEEEECSS-----TSEEEEEEEECTT--CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEE
T ss_pred -------CCceEEEcCCCCEEEEEECCC-----CCCceEEEEEeCC--CCcCCccEEEeCCCCCcEECCeeEEeCCCcCC
Confidence 34444554 688888887322 2367888887653 47899988886544 3455667777788776
Q ss_pred E
Q 048458 347 L 347 (386)
Q Consensus 347 l 347 (386)
+
T Consensus 275 i 275 (275)
T PF13088_consen 275 I 275 (275)
T ss_dssp E
T ss_pred C
Confidence 4
No 110
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.60 E-value=2.5e+02 Score=28.35 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=53.8
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEee
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVD 327 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~ 327 (386)
+.|+.|++.....+..-.-.... ......-.+.++.++...... ..++.|..++...--.|..
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~------~~v~~~~~~~~~~ciyS~~ad------~~v~~~~~~~~~~~~~~~~----- 142 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHY------GNVNEILDAQRLGCIYSVGAD------LKVVYILEKEKVIIRIWKE----- 142 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCC------CcceeeecccccCceEecCCc------eeEEEEecccceeeeeecc-----
Confidence 78999999887766553222211 112222334444444333321 5677777765211112221
Q ss_pred cCCCceeEEEEEecCCeEEEEecCCeEEEEECCCCeEE
Q 048458 328 LRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVV 365 (386)
Q Consensus 328 ~~~~~~~~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~ 365 (386)
......-+++.+||.+++.. ++.+..||.+++++-
T Consensus 143 --~~~~~~sl~is~D~~~l~~a-s~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 143 --QKPLVSSLCISPDGKILLTA-SRQIKVLDIETKEVV 177 (541)
T ss_pred --CCCccceEEEcCCCCEEEec-cceEEEEEccCceEE
Confidence 11111567777888777764 366999999999863
No 111
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.88 E-value=1.9e+02 Score=27.67 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=42.2
Q ss_pred CeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCcee-EEEEEecCCeEEEEe-cCCeEEEEECCCCe
Q 048458 286 KSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAW-QYLGFGANDEVMLRN-DDGELVLYDHKTQE 363 (386)
Q Consensus 286 G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~i~l~~-~~~~l~~ydl~~~~ 363 (386)
|.=++.....+ .+|.+|.+.- + . .-+.+..+..| +-++++++|+.++.. ++..|-+||+++++
T Consensus 303 ~~~~l~s~SrD-------ktIk~wdv~t-g-----~--cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 303 GGQVLGSGSRD-------KTIKIWDVST-G-----M--CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred CccEEEeeccc-------ceEEEEeccC-C-----e--EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 33445555555 5999998873 1 1 12222334444 788888889877754 55569999999998
Q ss_pred EEE
Q 048458 364 VVQ 366 (386)
Q Consensus 364 ~~~ 366 (386)
..+
T Consensus 368 cmk 370 (406)
T KOG0295|consen 368 CMK 370 (406)
T ss_pred eee
Confidence 533
No 112
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=48.63 E-value=50 Score=33.66 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=40.3
Q ss_pred eEEEEEECCCceeee----ecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeec
Q 048458 248 DIIVSFDFGDETFRY----RKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKEN 314 (386)
Q Consensus 248 ~~il~fD~~~~~~~~----i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~ 314 (386)
+.|.-||.....|+. +.-|... .+..+.|.-..|..++|....+ .++..|-++..
T Consensus 74 G~i~l~dt~~~~fr~ee~~lk~~~aH-----~nAifDl~wapge~~lVsasGD-------sT~r~Wdvk~s 132 (720)
T KOG0321|consen 74 GGIILFDTKSIVFRLEERQLKKPLAH-----KNAIFDLKWAPGESLLVSASGD-------STIRPWDVKTS 132 (720)
T ss_pred Cceeeecchhhhcchhhhhhcccccc-----cceeEeeccCCCceeEEEccCC-------ceeeeeeeccc
Confidence 789999999988882 1222221 1456666666799999999887 79999999863
No 113
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=48.01 E-value=2.4e+02 Score=26.48 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=54.5
Q ss_pred ceEEE-CCeEEEEEEeecCCC-CCceEEEEEECCCceeeeecCCCC-CCCCCCccceeEEEEe-CCeEEEEEeeCCCCCC
Q 048458 225 STVHL-NGAVHWMAIRKESDG-TNKDIIVSFDFGDETFRYRKLPDC-LYNTDHIHRERSIGIL-EKSIALFVSCHTEDNT 300 (386)
Q Consensus 225 ~~v~~-~G~lywl~~~~~~~~-~~~~~il~fD~~~~~~~~i~~P~~-~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~ 300 (386)
.++.+ +|.+...... .... .....++..|-..++|+....+.. .. ..+..++++ +|+|.++..+...
T Consensus 150 ~gi~l~~Grlv~p~~~-~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~-----~~e~~i~el~dG~l~~~~R~~~~--- 220 (351)
T cd00260 150 SGIQMKDGRLVFPVYG-GNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGG-----CSECSVVELSDGKLYMYTRDNSG--- 220 (351)
T ss_pred CeEEecCCcEEEEEEE-EcCCCCEEEEEEEECCCCCCcEECCCCCCCCC-----CcCCEEEEecCCEEEEEEeeCCC---
Confidence 35666 4888777655 3221 222455556666789987644433 11 457788898 8999988776521
Q ss_pred CCCCEEEEEEEeecCCCcceEEEEEee
Q 048458 301 AGLGICSVYVMKENIEVEHWINLFTVD 327 (386)
Q Consensus 301 ~~~~~i~iW~l~~~~~~~~W~~~~~i~ 327 (386)
..+.+..-++. ...|+......
T Consensus 221 ---~~~~~~~S~D~--G~tWs~~~~~~ 242 (351)
T cd00260 221 ---GRRPVYESRDM--GTTWTEALGTL 242 (351)
T ss_pred ---CcEEEEEEcCC--CcCcccCcCCc
Confidence 35555555553 37899876543
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=46.93 E-value=2.5e+02 Score=26.24 Aligned_cols=91 Identities=7% Similarity=0.067 Sum_probs=54.2
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeE--EEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEE
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSI--ALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFT 325 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L--~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~ 325 (386)
..+-.+|+.+.+-+.+.+-... ...+.-.+|.+ |++++.=+ .++..|-+... ..+.+
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~p--------vkt~~wv~~~~~~cl~TGSWD-------KTlKfWD~R~~------~pv~t 152 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAP--------VKTCHWVPGMNYQCLVTGSWD-------KTLKFWDTRSS------NPVAT 152 (347)
T ss_pred CceEEEEccCCCeeeeeecccc--------eeEEEEecCCCcceeEecccc-------cceeecccCCC------Ceeee
Confidence 6788899999988777543322 11222234444 88888766 59999987731 45567
Q ss_pred eecCCCceeEEEEEecCCeE-EEEecCCeEEEEECCCCe
Q 048458 326 VDLRAQFAWQYLGFGANDEV-MLRNDDGELVLYDHKTQE 363 (386)
Q Consensus 326 i~~~~~~~~~~~~~~~~g~i-~l~~~~~~l~~ydl~~~~ 363 (386)
+.++. +..+++-...+ ++...++++.+|||+...
T Consensus 153 ~~LPe----RvYa~Dv~~pm~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 153 LQLPE----RVYAADVLYPMAVVATAERHIAVYNLENPP 187 (347)
T ss_pred eeccc----eeeehhccCceeEEEecCCcEEEEEcCCCc
Confidence 77665 44444432222 233345567777775544
No 115
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=46.77 E-value=3.1e+02 Score=27.42 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=62.2
Q ss_pred EEEC-CeEEEEEEeecCCCCCceEEEEEECCCc--eeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCC
Q 048458 227 VHLN-GAVHWMAIRKESDGTNKDIIVSFDFGDE--TFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGL 303 (386)
Q Consensus 227 v~~~-G~lywl~~~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~ 303 (386)
++.+ |.+|.-... +.+.++|..+. .|+.-.-+...... ......+..+|.+++....... ....
T Consensus 106 ~~~~~~~V~v~~~~--------g~v~AlD~~TG~~~W~~~~~~~~~~~~---~i~ssP~v~~~~v~vg~~~~~~--~~~~ 172 (488)
T cd00216 106 AYWDPRKVFFGTFD--------GRLVALDAETGKQVWKFGNNDQVPPGY---TMTGAPTIVKKLVIIGSSGAEF--FACG 172 (488)
T ss_pred EEccCCeEEEecCC--------CeEEEEECCCCCEeeeecCCCCcCcce---EecCCCEEECCEEEEecccccc--ccCC
Confidence 4556 888875544 78999998754 55543222210000 0111223445555443221110 0000
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCC----------------CceeEEEEEec-CCeEEEEecCC--------------
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRA----------------QFAWQYLGFGA-NDEVMLRNDDG-------------- 352 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~----------------~~~~~~~~~~~-~g~i~l~~~~~-------------- 352 (386)
..=.++.++-...+..|.....-+... ..-|.+.+++. ++.||+...+.
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 122567777443356786544211000 00112334443 45677765332
Q ss_pred ----eEEEEECCCCeEEEe
Q 048458 353 ----ELVLYDHKTQEVVQC 367 (386)
Q Consensus 353 ----~l~~ydl~~~~~~~v 367 (386)
.++++|++|++..+-
T Consensus 253 ~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 253 LYTDSIVALDADTGKVKWF 271 (488)
T ss_pred CceeeEEEEcCCCCCEEEE
Confidence 699999999997775
No 116
>PRK04043 tolB translocation protein TolB; Provisional
Probab=46.11 E-value=3e+02 Score=27.00 Aligned_cols=101 Identities=9% Similarity=0.096 Sum_probs=56.7
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCC-eEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEe
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEK-SIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTV 326 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G-~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i 326 (386)
..|..+|+.+.+-+.+-..... ...... .-+| +|.+... .. ..-+||.++-.+ +.+.++...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~------~~~~~~-SPDG~~la~~~~-~~-------g~~~Iy~~dl~~--g~~~~LT~~ 275 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM------LVVSDV-SKDGSKLLLTMA-PK-------GQPDIYLYDTNT--KTLTQITNY 275 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc------EEeeEE-CCCCCEEEEEEc-cC-------CCcEEEEEECCC--CcEEEcccC
Confidence 4799999988877666322221 112222 2355 4544443 33 356889888422 345554322
Q ss_pred ecCCCceeEEEEEecCC-eEEEEecC---CeEEEEECCCCeEEEeee
Q 048458 327 DLRAQFAWQYLGFGAND-EVMLRNDD---GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 327 ~~~~~~~~~~~~~~~~g-~i~l~~~~---~~l~~ydl~~~~~~~v~~ 369 (386)
+. .. ..-...+|| .|++..+. ..++.+|+++++.+.+-.
T Consensus 276 ~~---~d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 276 PG---ID-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CC---cc-CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 21 11 122355677 57776642 259999999999876643
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=45.21 E-value=1.1e+02 Score=30.42 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=59.4
Q ss_pred ceEEEEEECCCc--eeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEE
Q 048458 247 KDIIVSFDFGDE--TFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLF 324 (386)
Q Consensus 247 ~~~il~fD~~~~--~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~ 324 (386)
++.|-+.|+... ++-+-+++.--.+. ..+-...--+|+-.++++.. .++.||-|.... .
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdn---yiRSckL~pdgrtLivGGea--------stlsiWDLAapT--p------ 499 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDN---YIRSCKLLPDGRTLIVGGEA--------STLSIWDLAAPT--P------ 499 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCccc---ceeeeEecCCCceEEecccc--------ceeeeeeccCCC--c------
Confidence 378889998753 22222444332211 12222233378888888764 599999998421 1
Q ss_pred EeecCC---CceeEEEEEecCCeEEEEe-cCCeEEEEECCCCeEE
Q 048458 325 TVDLRA---QFAWQYLGFGANDEVMLRN-DDGELVLYDHKTQEVV 365 (386)
Q Consensus 325 ~i~~~~---~~~~~~~~~~~~g~i~l~~-~~~~l~~ydl~~~~~~ 365 (386)
+|..+. ...+..+++..|.++.|.. .++.+.+||+..+++.
T Consensus 500 rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 500 RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 121111 1223567788888888864 4677999999998863
No 118
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=45.05 E-value=2.9e+02 Score=26.49 Aligned_cols=128 Identities=11% Similarity=0.134 Sum_probs=72.4
Q ss_pred EECCeEEEEEEeecCCCCCceEEEEEECCCc------eeeeecCCCCCCCCCCcc-ceeEEEEeCCeEEEEEeeCCCCCC
Q 048458 228 HLNGAVHWMAIRKESDGTNKDIIVSFDFGDE------TFRYRKLPDCLYNTDHIH-RERSIGILEKSIALFVSCHTEDNT 300 (386)
Q Consensus 228 ~~~G~lywl~~~~~~~~~~~~~il~fD~~~~------~~~~i~~P~~~~~~~~~~-~~~~L~~~~G~L~lv~~~~~~~~~ 300 (386)
-.+|..+|.+.. +.|..+|+... .|..+..-.....+.... +-..+...+++|++...... ..+
T Consensus 203 ~~dg~~~~vs~e--------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~-~~t 273 (352)
T TIGR02658 203 NKSGRLVWPTYT--------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRA-KWT 273 (352)
T ss_pred cCCCcEEEEecC--------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCc-ccc
Confidence 347999999887 78999996543 333332111100111001 11222223466666443211 111
Q ss_pred CCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-EEEEec--CCeEEEEECCCCe-EEEe-eec
Q 048458 301 AGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-VMLRND--DGELVLYDHKTQE-VVQC-ESS 370 (386)
Q Consensus 301 ~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i~l~~~--~~~l~~ydl~~~~-~~~v-~~~ 370 (386)
-....=.||++|- +++..+.+|...... ..+++.+|++ .++... ++.+.++|.++++ ++.+ .++
T Consensus 274 hk~~~~~V~ViD~----~t~kvi~~i~vG~~~--~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 274 HKTASRFLFVVDA----KTGKRLRKIELGHEI--DSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred ccCCCCEEEEEEC----CCCeEEEEEeCCCce--eeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 1112337899984 678899988876522 5677888887 555443 3459999999997 4666 553
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=44.52 E-value=3.4e+02 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=25.1
Q ss_pred EECCeEEEEEEeecC----CCCCceEEEEEECCCceeeeecCCCCC
Q 048458 228 HLNGAVHWMAIRKES----DGTNKDIIVSFDFGDETFRYRKLPDCL 269 (386)
Q Consensus 228 ~~~G~lywl~~~~~~----~~~~~~~il~fD~~~~~~~~i~~P~~~ 269 (386)
..+|-+|.++.- +. .+.....|...|-.=...+.+++|...
T Consensus 285 aH~ggv~~L~~l-r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 285 AHDGGVFSLCML-RDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred ecCCceEEEEEe-cCccEeecCccceEEeccccccccccccCchhc
Confidence 345556665544 21 122336888888666677778898865
No 120
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.22 E-value=1.5e+02 Score=31.89 Aligned_cols=76 Identities=12% Similarity=0.233 Sum_probs=46.1
Q ss_pred EEeCCeEEEEE-eeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecC-CeEEEEEC
Q 048458 282 GILEKSIALFV-SCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDD-GELVLYDH 359 (386)
Q Consensus 282 ~~~~G~L~lv~-~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~-~~l~~ydl 359 (386)
+...+.|=++. +.++ ..+.+|+|.+ .+.|+.--.=...... ..+-++++.+++++..+ ..+-+||+
T Consensus 212 aAfhpTlpliVSG~DD-------RqVKlWrmne---tKaWEvDtcrgH~nnV--ssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADD-------RQVKLWRMNE---TKAWEVDTCRGHYNNV--SSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred EEecCCcceEEecCCc-------ceeeEEEecc---ccceeehhhhcccCCc--ceEEecCccceeEecCCCccEEEEec
Confidence 44555554433 3344 7899999997 4679863211111122 34555666678887764 45999999
Q ss_pred CCCeE-EEeee
Q 048458 360 KTQEV-VQCES 369 (386)
Q Consensus 360 ~~~~~-~~v~~ 369 (386)
+.++- +....
T Consensus 280 ~kRt~v~tfrr 290 (1202)
T KOG0292|consen 280 TKRTSVQTFRR 290 (1202)
T ss_pred ccccceeeeec
Confidence 99984 44444
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.95 E-value=4.1e+02 Score=27.98 Aligned_cols=81 Identities=15% Similarity=0.335 Sum_probs=55.1
Q ss_pred eEEe---eecccEEEeecCCCCccccEEEEccccccceecCCCCCCchhhhhhccccccccchhhhccCcceeeeEeeee
Q 048458 91 QIVS---SCSGLVCLLLNTFHSCHFPMFVWNPSTRKYKKIPSHKSFDWEKEQYRSSATASFIWEKEMKGSFATFAITGFG 167 (386)
Q Consensus 91 ~~~~---s~~GLl~~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 167 (386)
.|++ |-|++||-. .-+++ +=+|.|-++++..+-..... +|...
T Consensus 371 DILDlSWSKn~fLLSS-SMDKT----VRLWh~~~~~CL~~F~Hndf-----------------------------VTcVa 416 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSS-SMDKT----VRLWHPGRKECLKVFSHNDF-----------------------------VTCVA 416 (712)
T ss_pred hheecccccCCeeEec-ccccc----EEeecCCCcceeeEEecCCe-----------------------------eEEEE
Confidence 4555 678998877 45666 88999999999876554432 24777
Q ss_pred eecCCCCeEEEEEEEeeeccccccccccceEEEEEcCCC---ceeecCCCCCCcc
Q 048458 168 YDHRTSDFKILLIVHAREVASEQFRREFSDIQVYSLKNN---CWRRIQPNVPCIP 219 (386)
Q Consensus 168 ~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~~~---~W~~~~~~~p~~~ 219 (386)
|+|..++|-+-+ ...-.+.+++.... .|..+. .+-+..
T Consensus 417 FnPvDDryFiSG-------------SLD~KvRiWsI~d~~Vv~W~Dl~-~lITAv 457 (712)
T KOG0283|consen 417 FNPVDDRYFISG-------------SLDGKVRLWSISDKKVVDWNDLR-DLITAV 457 (712)
T ss_pred ecccCCCcEeec-------------ccccceEEeecCcCeeEeehhhh-hhheeE
Confidence 899999987766 22345677776553 587776 443333
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=43.80 E-value=4.5e+02 Score=28.37 Aligned_cols=104 Identities=8% Similarity=0.040 Sum_probs=51.2
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDH 274 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~ 274 (386)
...+.+|...++.=..+-....+ ..+.-.|..+|..-..+.+ + ..|-+.+..+..-...-.+...
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftl---p~r~~~v~g~g~~iaagsd-D------~~vK~~~~~D~s~~~~lrgh~a----- 139 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTL---PIRDLAVSGSGKMIAAGSD-D------TAVKLLNLDDSSQEKVLRGHDA----- 139 (933)
T ss_pred cceEEEeeCCCCCccceeeeeec---cceEEEEecCCcEEEeecC-c------eeEEEEeccccchheeecccCC-----
Confidence 55677887766543322211111 1122244555555554444 2 5677777665443333222211
Q ss_pred ccceeEEE-EeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEE
Q 048458 275 IHRERSIG-ILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINL 323 (386)
Q Consensus 275 ~~~~~~L~-~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~ 323 (386)
....|- .-+|.+..+..+.. .+.||.+++......|..+
T Consensus 140 --pVl~l~~~p~~~fLAvss~dG--------~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 140 --PVLQLSYDPKGNFLAVSSCDG--------KVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred --ceeeeeEcCCCCEEEEEecCc--------eEEEEEcccchhhhhcccC
Confidence 111221 12566666666654 8999999864333455554
No 123
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=43.51 E-value=2.7e+02 Score=25.82 Aligned_cols=97 Identities=11% Similarity=0.190 Sum_probs=55.3
Q ss_pred eEEEEEECCCc-----eeeee---cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcc
Q 048458 248 DIIVSFDFGDE-----TFRYR---KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEH 319 (386)
Q Consensus 248 ~~il~fD~~~~-----~~~~i---~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~ 319 (386)
+-|+.|++.+. ++..+ +.+ +.-..+..++|+|.+..+ ..+.+|.+++. ++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~---------g~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~---~~ 119 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK---------GPVTAICSFNGRLVVAVG----------NKLYVYDLDNS---KT 119 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES---------S-EEEEEEETTEEEEEET----------TEEEEEEEETT---SS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec---------CcceEhhhhCCEEEEeec----------CEEEEEEccCc---cc
Confidence 66777777773 44443 222 345567788999555554 48999999962 24
Q ss_pred eEEEEEeecCCCceeEEEEEecCCeEEEEecCC--eEEEEECCCCeEEEeee
Q 048458 320 WINLFTVDLRAQFAWQYLGFGANDEVMLRNDDG--ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 320 W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~--~l~~ydl~~~~~~~v~~ 369 (386)
+..+...+..... .-+.+. ++.|++..-.. .++.|+-+.+++..+.-
T Consensus 120 l~~~~~~~~~~~i--~sl~~~-~~~I~vgD~~~sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 120 LLKKAFYDSPFYI--TSLSVF-KNYILVGDAMKSVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp EEEEEEE-BSSSE--EEEEEE-TTEEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred chhhheecceEEE--EEEecc-ccEEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence 7777766554411 222222 23455443322 36666877777777765
No 124
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.45 E-value=4.3e+02 Score=28.01 Aligned_cols=111 Identities=9% Similarity=0.097 Sum_probs=64.4
Q ss_pred ECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEE
Q 048458 229 LNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICS 307 (386)
Q Consensus 229 ~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~ 307 (386)
-||.+-..+.+ + ++|-++|..+.-+... .=|... ..... ..-.|+..+ +.+-+ .+++
T Consensus 360 pDgq~iaTG~e-D------gKVKvWn~~SgfC~vTFteHts~------Vt~v~-f~~~g~~ll-ssSLD-------GtVR 417 (893)
T KOG0291|consen 360 PDGQLIATGAE-D------GKVKVWNTQSGFCFVTFTEHTSG------VTAVQ-FTARGNVLL-SSSLD-------GTVR 417 (893)
T ss_pred CCCcEEEeccC-C------CcEEEEeccCceEEEEeccCCCc------eEEEE-EEecCCEEE-EeecC-------CeEE
Confidence 35555544444 2 6888888887655443 222111 11222 222444333 33334 5899
Q ss_pred EEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCC--eEEEEECCCCeEEEe
Q 048458 308 VYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDG--ELVLYDHKTQEVVQC 367 (386)
Q Consensus 308 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~--~l~~ydl~~~~~~~v 367 (386)
.|-|+.|.+ -+.++.+.+ ..+..+++++.|++++..... .+++++++|++...+
T Consensus 418 AwDlkRYrN----fRTft~P~p--~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 418 AWDLKRYRN----FRTFTSPEP--IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred eeeecccce----eeeecCCCc--eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 999997532 222334433 333678888888888875433 599999999997665
No 125
>PF13013 F-box-like_2: F-box-like domain
Probab=43.18 E-value=5.6 Score=30.96 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=23.8
Q ss_pred CCCCcHHHHHHHHccCCccccceeeeccc
Q 048458 2 SKSLPAKFMLETLLKLPVKTLTRFKCVSK 30 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP~~sl~r~~~VcK 30 (386)
+.+||+||++.|+..-..+.+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56799999999999999888866655555
No 126
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=42.52 E-value=2.9e+02 Score=25.82 Aligned_cols=144 Identities=11% Similarity=0.173 Sum_probs=60.4
Q ss_pred EEEEEcCC--CceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCc
Q 048458 198 IQVYSLKN--NCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHI 275 (386)
Q Consensus 198 ~~vyss~~--~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~ 275 (386)
-.||.+.+ .+|+.+. ..+... ...-...-+|.+..+... + ..++..|.....|+....+....
T Consensus 124 G~iy~T~DgG~tW~~~~-~~~~gs--~~~~~r~~dG~~vavs~~-G------~~~~s~~~G~~~w~~~~r~~~~r----- 188 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVV-SETSGS--INDITRSSDGRYVAVSSR-G------NFYSSWDPGQTTWQPHNRNSSRR----- 188 (302)
T ss_dssp --EEEESSTTSSEEEEE--S------EEEEEE-TTS-EEEEETT-S------SEEEEE-TT-SS-EEEE--SSS------
T ss_pred CcEEEeCCCCCCeeEcc-cCCcce--eEeEEECCCCcEEEEECc-c------cEEEEecCCCccceEEccCccce-----
Confidence 35776655 5999876 222211 111122345664333333 3 56788999999999988775431
Q ss_pred cceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCC-CceeEEEEEecCCeEEEEecCCeE
Q 048458 276 HRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRA-QFAWQYLGFGANDEVMLRNDDGEL 354 (386)
Q Consensus 276 ~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~g~i~l~~~~~~l 354 (386)
-+.+. ..-+|.|.|+.. . ..+. .-++....+.|.+-. ++... .+.+--++...+++++.....+.|
T Consensus 189 iq~~g-f~~~~~lw~~~~-G--------g~~~--~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 189 IQSMG-FSPDGNLWMLAR-G--------GQIQ--FSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp EEEEE-E-TTS-EEEEET-T--------TEEE--EEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred ehhce-ecCCCCEEEEeC-C--------cEEE--EccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence 11111 123688888662 2 2443 333122346788722 22211 222233444455567666655544
Q ss_pred EEEECCCCeEEEeee
Q 048458 355 VLYDHKTQEVVQCES 369 (386)
Q Consensus 355 ~~ydl~~~~~~~v~~ 369 (386)
+.=.=..++|++...
T Consensus 256 ~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 256 LVSTDGGKTWQKDRV 270 (302)
T ss_dssp EEESSTTSS-EE-GG
T ss_pred EEeCCCCccceECcc
Confidence 444445566888754
No 127
>PRK05137 tolB translocation protein TolB; Provisional
Probab=41.46 E-value=3.5e+02 Score=26.46 Aligned_cols=151 Identities=9% Similarity=0.077 Sum_probs=70.5
Q ss_pred ceEEEEEcCCCceeecCCCCCCcc--ccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCC
Q 048458 196 SDIQVYSLKNNCWRRIQPNVPCIP--CLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTD 273 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~~p~~~--~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 273 (386)
..-..|+.....||.+.-.+.-.. .+.. ..-++++.+.++... .........|...|.....-+.+.-....
T Consensus 130 ~~~~~~~~~~~~~r~~ah~~~d~i~~~ltg-~~g~f~~~iafv~~~-~~~~~~~~~l~~~d~dg~~~~~lt~~~~~---- 203 (435)
T PRK05137 130 LTGQQFVTPPENWRRAAHKIADAIYERLTG-EKGYFDTRIVYVAES-GPKNKRIKRLAIMDQDGANVRYLTDGSSL---- 203 (435)
T ss_pred eeeeEEEcCHHHHHHHHHHHHHHHHHHHhC-CCCcCCCeEEEEEee-CCCCCcceEEEEECCCCCCcEEEecCCCC----
Confidence 344556655566776651000000 1111 234567788888765 32111236788888876654444211111
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-EEEEec--
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-VMLRND-- 350 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i~l~~~-- 350 (386)
.......-.+.+|+++..... ...+-+|-++. +....+...+ . .. .-..+.+||+ |++...
T Consensus 204 --v~~p~wSpDG~~lay~s~~~g------~~~i~~~dl~~----g~~~~l~~~~--g-~~-~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 204 --VLTPRFSPNRQEITYMSYANG------RPRVYLLDLET----GQRELVGNFP--G-MT-FAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred --eEeeEECCCCCEEEEEEecCC------CCEEEEEECCC----CcEEEeecCC--C-cc-cCcEECCCCCEEEEEEecC
Confidence 122232333345555544332 13444444432 2233222111 1 10 2234556774 555432
Q ss_pred -CCeEEEEECCCCeEEEee
Q 048458 351 -DGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 351 -~~~l~~ydl~~~~~~~v~ 368 (386)
..+++.+|+++++.+.+.
T Consensus 268 g~~~Iy~~d~~~~~~~~Lt 286 (435)
T PRK05137 268 GNTDIYTMDLRSGTTTRLT 286 (435)
T ss_pred CCceEEEEECCCCceEEcc
Confidence 235999999999877664
No 128
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=41.08 E-value=2.8e+02 Score=25.22 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=71.2
Q ss_pred ceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-----cCCCCCC
Q 048458 196 SDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-----KLPDCLY 270 (386)
Q Consensus 196 ~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-----~~P~~~~ 270 (386)
-.+.|++++++.-.... +|........-.|.-+|+.---+.. ++..++.++-+.+...- +++....
T Consensus 146 g~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsml~a~nn-------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSMLAAANN-------KGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred CcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcEEEEecC-------CccEEEEEccCCCccccceEhhheecccc
Confidence 35677777776432221 2222222233355667765544443 25667777665433222 2222210
Q ss_pred CCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCcee-EEEEEecCCeEEEEe
Q 048458 271 NTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAW-QYLGFGANDEVMLRN 349 (386)
Q Consensus 271 ~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~i~l~~ 349 (386)
..-..+..-+++....++.+ .++.||..++. .+....+..+..| .--+++.||+.++..
T Consensus 217 -----~il~C~lSPd~k~lat~ssd--------ktv~iwn~~~~-------~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 217 -----HILRCLLSPDVKYLATCSSD--------KTVKIWNTDDF-------FKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred -----eEEEEEECCCCcEEEeecCC--------ceEEEEecCCc-------eeeEEEeecCCceEEeeeeccCccEEEec
Confidence 11222223356655555544 49999999862 1111222222233 444555667544433
Q ss_pred -cCCeEEEEECCCCeEEEee
Q 048458 350 -DDGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 350 -~~~~l~~ydl~~~~~~~v~ 368 (386)
.+.....+|++.++-....
T Consensus 277 ssd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred CCCCceeecccccCceeeec
Confidence 3445888999988855543
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=40.72 E-value=4.1e+02 Score=28.67 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=55.6
Q ss_pred eEEEEEECCCceeeee--cCCCCCCCC-CCccceeEEEE--eCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEE
Q 048458 248 DIIVSFDFGDETFRYR--KLPDCLYNT-DHIHRERSIGI--LEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWIN 322 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i--~~P~~~~~~-~~~~~~~~L~~--~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~ 322 (386)
+.+.++|+.+...... .+++..... + .....++= .+|.|.+..... .+.++..+ .|++
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s--~i~~~~aW~Pk~g~la~~~~d~---------~Vkvy~r~------~we~ 222 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILS--RICTRLAWHPKGGTLAVPPVDN---------TVKVYSRK------GWEL 222 (933)
T ss_pred ceEEEEEcccchhhhhcccCCcccccccc--ceeeeeeecCCCCeEEeeccCC---------eEEEEccC------Ccee
Confidence 6777777776554332 444433221 1 11122221 246666666543 56665444 5999
Q ss_pred EEEeecCCCc-eeEEEEEecCCeEEE-EecCCeEEEEECCCCe
Q 048458 323 LFTVDLRAQF-AWQYLGFGANDEVML-RNDDGELVLYDHKTQE 363 (386)
Q Consensus 323 ~~~i~~~~~~-~~~~~~~~~~g~i~l-~~~~~~l~~ydl~~~~ 363 (386)
.+.+...... .+..+..+++|.-+- ...++.+.+||.++..
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 9988765522 256777777774333 3346678888888643
No 130
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.51 E-value=3.5e+02 Score=25.90 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=75.2
Q ss_pred ccceEEEEEcCCCceeecCCCCCCccccCCCceEEECCeEEEEEEeecC--CC-CCceEEEEEECCCceeeee-cCCCCC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKES--DG-TNKDIIVSFDFGDETFRYR-KLPDCL 269 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~--~~-~~~~~il~fD~~~~~~~~i-~~P~~~ 269 (386)
....+-+|+..++.|+... ..|+.. ...+++...|...++... +. +. +..-...-|.-...+|..+ ++|...
T Consensus 194 ~n~ev~sy~p~~n~W~~~G-~~pf~~--~aGsa~~~~~n~~~lInG-EiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLG-ENPFYG--NAGSAVVIKGNKLTLING-EIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred ccccccccccccchhhhcC-cCcccC--ccCcceeecCCeEEEEcc-eecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 4456788999999999999 666653 223455555554444433 22 11 1223455566668889887 566544
Q ss_pred CCCCCccceeEE----EEeCCeEEEEEeeCCC--------------CCCCCCCEEEEEEEeecCCCcceEEEEEeecCCC
Q 048458 270 YNTDHIHRERSI----GILEKSIALFVSCHTE--------------DNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQ 331 (386)
Q Consensus 270 ~~~~~~~~~~~L----~~~~G~L~lv~~~~~~--------------~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~ 331 (386)
... .+... +..+|.+.+..+-... +.....-.-+||.+++ ++|..+..++....
T Consensus 270 ~~~----~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l~ 341 (381)
T COG3055 270 GSN----KEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGLA 341 (381)
T ss_pred CCC----ccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCcc
Confidence 321 12222 2334454444432110 0011223457888884 68998887775332
Q ss_pred ceeEEEEEecCCeEEEEe
Q 048458 332 FAWQYLGFGANDEVMLRN 349 (386)
Q Consensus 332 ~~~~~~~~~~~g~i~l~~ 349 (386)
+ -+.+.-++.|++..
T Consensus 342 Y---G~s~~~nn~vl~IG 356 (381)
T COG3055 342 Y---GVSLSYNNKVLLIG 356 (381)
T ss_pred c---eEEEecCCcEEEEc
Confidence 2 22333344566653
No 131
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=37.96 E-value=3.5e+02 Score=25.50 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeCCeEEEEEeeCC
Q 048458 222 SSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILEKSIALFVSCHT 296 (386)
Q Consensus 222 ~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~ 296 (386)
..++|-..+|.+|.+... .+.+..+|.+++++..+ .+|.... .|+-. |.+.+|+...-
T Consensus 204 mPhSPRWhdgrLwvldsg-------tGev~~vD~~~G~~e~Va~vpG~~r---------GL~f~-G~llvVgmSk~ 262 (335)
T TIGR03032 204 MPHSPRWYQGKLWLLNSG-------RGELGYVDPQAGKFQPVAFLPGFTR---------GLAFA-GDFAFVGLSKL 262 (335)
T ss_pred CCcCCcEeCCeEEEEECC-------CCEEEEEcCCCCcEEEEEECCCCCc---------cccee-CCEEEEEeccc
Confidence 445688999999887655 27899999998998887 7776442 22222 88888877543
No 132
>PTZ00334 trans-sialidase; Provisional
Probab=37.12 E-value=2.5e+02 Score=30.00 Aligned_cols=84 Identities=12% Similarity=0.223 Sum_probs=53.5
Q ss_pred CceEEE-CCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCCCCCccceeEEEEeC-CeEEEEEeeCCCCCC
Q 048458 224 NSTVHL-NGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYNTDHIHRERSIGILE-KSIALFVSCHTEDNT 300 (386)
Q Consensus 224 ~~~v~~-~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~L~~~~-G~L~lv~~~~~~~~~ 300 (386)
.++|.. ||+|-+-..- .........++.|-..+..|..- -+|+.. +..+.++|.+ |+|.|+..|.+
T Consensus 263 GSGI~medGTLVFPv~a-~~~~g~~vslIiYS~d~g~W~ls~g~s~~g------C~~P~I~EWe~gkLlM~t~C~d---- 331 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEG-TKKDGKAVSLIIYSSATESGNLSKGMSADG------CSDPSVVEWKEGKLMMMTACDD---- 331 (780)
T ss_pred cCeEEecCCeEEEEEEE-EcCCCCEEEEEEEecCCCCeEEcCCCCCCC------CCCCEEEEEcCCeEEEEEEeCC----
Confidence 345554 7887766544 11122235677786666678643 233322 5778899995 99999999987
Q ss_pred CCCCEEEEEEEeecCCCcceEEE
Q 048458 301 AGLGICSVYVMKENIEVEHWINL 323 (386)
Q Consensus 301 ~~~~~i~iW~l~~~~~~~~W~~~ 323 (386)
..-.|+.-.|- ...|++.
T Consensus 332 ---G~RrVYES~Dm--G~tWtEA 349 (780)
T PTZ00334 332 ---GRRRVYESGDK--GDSWTEA 349 (780)
T ss_pred ---CCEEEEEECCC--CCChhhC
Confidence 45577776653 3678874
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=37.04 E-value=5e+02 Score=26.97 Aligned_cols=55 Identities=7% Similarity=0.113 Sum_probs=28.3
Q ss_pred CEEEEEEEeecC--CCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCCeEEEEE
Q 048458 304 GICSVYVMKENI--EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYD 358 (386)
Q Consensus 304 ~~i~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~~l~~yd 358 (386)
..+.+|++.... .+..-.++..+..+....+.+.++.++|.++....-..+..|.
T Consensus 353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred ccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 478889887421 1123344444544444344677777777644433323333443
No 134
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=36.70 E-value=1.2e+02 Score=27.26 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=51.2
Q ss_pred EEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecC
Q 048458 250 IVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLR 329 (386)
Q Consensus 250 il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~ 329 (386)
=..||+.+.+++.+.++...- ......--+|+|..+++... +...+++..-..+.....|.+.... +
T Consensus 48 s~~yD~~tn~~rpl~v~td~F------CSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~w~e~~~~-m- 114 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTF------CSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCDWTESPND-M- 114 (243)
T ss_pred EEEEecCCCcEEeccCCCCCc------ccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCCceECccc-c-
Confidence 467999999999887765442 22222334799998887654 4455666554332234568875432 1
Q ss_pred CCcee-EEEEEecCCeEEEEec
Q 048458 330 AQFAW-QYLGFGANDEVMLRND 350 (386)
Q Consensus 330 ~~~~~-~~~~~~~~g~i~l~~~ 350 (386)
....| --...-+||+|++...
T Consensus 115 ~~~RWYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 115 QSGRWYPTATTLPDGRVLIVGG 136 (243)
T ss_pred cCCCccccceECCCCCEEEEeC
Confidence 12233 2233445787777654
No 135
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=35.72 E-value=20 Score=33.72 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHccCC--------ccccceeeeccccccccccC
Q 048458 2 SKSLPAKFMLETLLKLP--------VKTLTRFKCVSKQWHSVISN 38 (386)
Q Consensus 2 ~~~LP~dll~~IL~rLP--------~~sl~r~~~VcK~W~~liss 38 (386)
++.||.++|.+|+.|.. -+..+.+..|||.|+....+
T Consensus 45 ~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 45 WAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 46899999999999886 23678999999999997655
No 136
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.54 E-value=4e+02 Score=25.08 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=44.4
Q ss_pred cceEEEEEcCCC-ceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCC
Q 048458 195 FSDIQVYSLKNN-CWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTD 273 (386)
Q Consensus 195 ~~~~~vyss~~~-~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 273 (386)
...+.+|.+++. --+.+. .|- ......+.++.-...+.+ + ..|..+|..+... +..+..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~--~~~----r~l~~~~l~~~~L~vG~d-~------~~i~~~D~ds~~~-----~~~~~AH~ 249 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIE--NPK----RILCATFLDGSELLVGGD-N------EWISLKDTDSDTP-----LTEFLAHE 249 (362)
T ss_pred ccEEEEEecccHhHhhhhh--ccc----cceeeeecCCceEEEecC-C------ceEEEeccCCCcc-----ceeeecch
Confidence 456788888764 334444 110 001123444444444443 2 6899999987221 11111111
Q ss_pred CccceeEEE--EeCCeEEEEEeeCCCCCCCCCCEEEEEEEee
Q 048458 274 HIHRERSIG--ILEKSIALFVSCHTEDNTAGLGICSVYVMKE 313 (386)
Q Consensus 274 ~~~~~~~L~--~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~ 313 (386)
.....+. .....=++++...+ ..|.||.++-
T Consensus 250 --~RVK~i~~~~~~~~~~lvTaSSD-------G~I~vWd~~~ 282 (362)
T KOG0294|consen 250 --NRVKDIASYTNPEHEYLVTASSD-------GFIKVWDIDM 282 (362)
T ss_pred --hheeeeEEEecCCceEEEEeccC-------ceEEEEEccc
Confidence 1222222 22233445555555 6899998873
No 137
>PF13854 Kelch_5: Kelch motif
Probab=33.72 E-value=1.1e+02 Score=18.74 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=24.4
Q ss_pred cCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCC
Q 048458 221 LSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGD 257 (386)
Q Consensus 221 ~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~ 257 (386)
...+..+.+++.+|-.++........-..+..+|+.+
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4456688899999999877211222335677887765
No 138
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=33.30 E-value=7.4e+02 Score=27.86 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=41.7
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeC-CeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEe
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILE-KSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTV 326 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~-G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i 326 (386)
..|+-|.-...+-..+.+|....... ..... -+.+ .-|.++...... ..+.+|...+ ..|-++..+
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de~~--ve~L~-Wns~sdiLAv~~~~~e~------~~v~lwt~~N----yhWYLKq~l 332 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDEKE--VEELA-WNSNSDILAVVTSNLEN------SLVQLWTTGN----YHWYLKQEL 332 (1265)
T ss_pred CcEEEEecCCccccccccCCcccccc--hheee-ecCCCCceeeeeccccc------ceEEEEEecC----eEEEEEEEE
Confidence 47888888877776664443322110 11122 2333 455555555442 4599999996 579999887
Q ss_pred ecCC
Q 048458 327 DLRA 330 (386)
Q Consensus 327 ~~~~ 330 (386)
....
T Consensus 333 ~~~~ 336 (1265)
T KOG1920|consen 333 QFSQ 336 (1265)
T ss_pred eccc
Confidence 7655
No 139
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=32.90 E-value=3.8e+02 Score=24.33 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=42.8
Q ss_pred CEEEEEEEeec----CCCcceEEEEEeecC--CCceeEEEEEec-CCeEEEEecCCeEEEEECCCCeEEEeee
Q 048458 304 GICSVYVMKEN----IEVEHWINLFTVDLR--AQFAWQYLGFGA-NDEVMLRNDDGELVLYDHKTQEVVQCES 369 (386)
Q Consensus 304 ~~i~iW~l~~~----~~~~~W~~~~~i~~~--~~~~~~~~~~~~-~g~i~l~~~~~~l~~ydl~~~~~~~v~~ 369 (386)
..+.-|...|. +-+..|+.+.-+... ...+...+.+++ .+.|++...++.++..|+|+++++...-
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 36777877643 234568876433221 122224455554 5678888888889999999999988755
No 140
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.72 E-value=6.3e+02 Score=26.84 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=67.4
Q ss_pred ceEEEC--CeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEE-EeCCeEEEEEeeCCCCCCC
Q 048458 225 STVHLN--GAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIG-ILEKSIALFVSCHTEDNTA 301 (386)
Q Consensus 225 ~~v~~~--G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~-~~~G~L~lv~~~~~~~~~~ 301 (386)
++|.+| |-+-+.+.. + -..|.+.++.|++.-.+-- +.+ +.-..|. .-.|. .++.+.-+
T Consensus 439 scvavD~sGelV~AG~~-d-----~F~IfvWS~qTGqllDiLs--GHE-----gPVs~l~f~~~~~-~LaS~SWD----- 499 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQ-D-----SFEIFVWSVQTGQLLDILS--GHE-----GPVSGLSFSPDGS-LLASGSWD----- 499 (893)
T ss_pred eEEEEcCCCCEEEeecc-c-----eEEEEEEEeecCeeeehhc--CCC-----CcceeeEEccccC-eEEecccc-----
Confidence 467777 888777755 3 2789999999887765421 111 1122222 22455 44444444
Q ss_pred CCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCC-eEEEEecCCeEEEEECCCCe
Q 048458 302 GLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGAND-EVMLRNDDGELVLYDHKTQE 363 (386)
Q Consensus 302 ~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g-~i~l~~~~~~l~~ydl~~~~ 363 (386)
.++.+|.+=+ +|..+.+++..... --+.+.++| +|.+.+-++.+-+||.+.+.
T Consensus 500 --kTVRiW~if~-----s~~~vEtl~i~sdv--l~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 500 --KTVRIWDIFS-----SSGTVETLEIRSDV--LAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred --ceEEEEEeec-----cCceeeeEeeccce--eEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 5999997763 46666666654422 345556666 57777666778888876654
No 141
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.05 E-value=4.4e+02 Score=24.56 Aligned_cols=164 Identities=12% Similarity=0.039 Sum_probs=79.9
Q ss_pred cceEEEEEcCCCc-eeecCCCCCCccccCCCceEE-ECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCCCC
Q 048458 195 FSDIQVYSLKNNC-WRRIQPNVPCIPCLSSNSTVH-LNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCLYN 271 (386)
Q Consensus 195 ~~~~~vyss~~~~-W~~~~~~~p~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~ 271 (386)
.....+|+..+.. =..+. . ...+.+...+|+ -||.+.+.+.. +. ..+++.|=+||.. +.|+.+ +.|...-
T Consensus 90 Gtf~~vfD~~~~~~pv~~~-s--~~~RHfyGHGvfs~dG~~LYATEn-df-d~~rGViGvYd~r-~~fqrvgE~~t~Gi- 162 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLV-S--QEGRHFYGHGVFSPDGRLLYATEN-DF-DPNRGVIGVYDAR-EGFQRVGEFSTHGI- 162 (366)
T ss_pred CceEEEECCCCCcCcEEEe-c--ccCceeecccccCCCCcEEEeecC-CC-CCCCceEEEEecc-cccceecccccCCc-
Confidence 4456677776643 11111 1 111233333554 67877766655 44 3356899999998 777766 7776543
Q ss_pred CCCccceeEEEEeCCeEEEEEee-CCCCCCCCCCEEEEEEEeec-----CCCcceEEEEEeecCC-CceeEEEEEecCCe
Q 048458 272 TDHIHRERSIGILEKSIALFVSC-HTEDNTAGLGICSVYVMKEN-----IEVEHWINLFTVDLRA-QFAWQYLGFGANDE 344 (386)
Q Consensus 272 ~~~~~~~~~L~~~~G~L~lv~~~-~~~~~~~~~~~i~iW~l~~~-----~~~~~W~~~~~i~~~~-~~~~~~~~~~~~g~ 344 (386)
+.+-.+..-+|++.++..- -.+--.-+..++.|=.|+-. .....=.++++++... ....+.+..+.||.
T Consensus 163 ----GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 163 ----GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred ----CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc
Confidence 2223333446666554321 00000012233433333210 0123344555555222 23337788888888
Q ss_pred EEEEec-----CC--eEEEEECCCCeEEEeee
Q 048458 345 VMLRND-----DG--ELVLYDHKTQEVVQCES 369 (386)
Q Consensus 345 i~l~~~-----~~--~l~~ydl~~~~~~~v~~ 369 (386)
|++-.. +. -|+.---+++.++-+..
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~ 270 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL 270 (366)
T ss_pred EEEEEEeeCCCccCCcceeeccCCCcCcccCC
Confidence 777431 11 15555555555555554
No 142
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=30.95 E-value=3.4e+02 Score=23.19 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=47.0
Q ss_pred eEEEEEECCCce-eeeecCCCCCCCCCCccceeEEEEe-CCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEE
Q 048458 248 DIIVSFDFGDET-FRYRKLPDCLYNTDHIHRERSIGIL-EKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFT 325 (386)
Q Consensus 248 ~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~ 325 (386)
+.|..||+.+.. ...+.... .....+.-. +|+..+++.. + ..+.+|.+... .....
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~-~-------~~i~i~d~~~~------~~~~~ 214 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHT--------GEVNSVAFSPDGEKLLSSSS-D-------GTIKLWDLSTG------KCLGT 214 (289)
T ss_pred CcEEEEEccccccceeEecCc--------cccceEEECCCcCEEEEecC-C-------CcEEEEECCCC------ceecc
Confidence 678899987543 23233111 111122222 4434444443 3 57889987641 11122
Q ss_pred eecCCCceeEEEEEecCCeEEEEec-CCeEEEEECCCCeE
Q 048458 326 VDLRAQFAWQYLGFGANDEVMLRND-DGELVLYDHKTQEV 364 (386)
Q Consensus 326 i~~~~~~~~~~~~~~~~g~i~l~~~-~~~l~~ydl~~~~~ 364 (386)
+.... ....-+.+.+++.+++... ++.+..||+++++.
T Consensus 215 ~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 215 LRGHE-NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred hhhcC-CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 21111 1113455556666666554 67799999987554
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=30.93 E-value=3.9e+02 Score=27.69 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=39.7
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCCeEEEEECCCCeEEE
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEVVQ 366 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~~ 366 (386)
..++||.+.. .|-....|.........-++..++++++=..-++.+.-||+.+.+-+.
T Consensus 47 g~IEiwN~~~-----~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 47 GNIEIWNLSN-----NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred CcEEEEccCC-----CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 6899999984 599998887765444455555555566555556677777777766433
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=30.84 E-value=3.5e+02 Score=25.17 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=36.1
Q ss_pred CEEEEEEEeecC---CCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCCeEEEEECCCCeE
Q 048458 304 GICSVYVMKENI---EVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEV 364 (386)
Q Consensus 304 ~~i~iW~l~~~~---~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~ 364 (386)
....||.+.+.- +...|+.+..++.........+-..+|++-+....+.++..++++..+-
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~ 156 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSK 156 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcc
Confidence 567899997642 2234887777765443322223333456555555566788888776653
No 145
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=30.72 E-value=3.6e+02 Score=27.55 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=50.6
Q ss_pred eEEEEEECCCceee-eecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEe
Q 048458 248 DIIVSFDFGDETFR-YRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTV 326 (386)
Q Consensus 248 ~~il~fD~~~~~~~-~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i 326 (386)
..|..||++.++|- .+..-... .....+.+++|-|++ +... ..++.|-.-.-..-+.=.....|
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~------lN~v~in~~hgLla~--Gt~~-------g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGE------LNVVSINEEHGLLAC--GTED-------GVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred cceEEEEcccccccccccccccc------ceeeeecCccceEEe--cccC-------ceEEEecchhhhhheeeeccccc
Confidence 57899999988873 22221111 223344444554432 2223 58888865431100100000111
Q ss_pred ecCCC----ceeEEEEEecCC-eEEEEecCCeEEEEECCCCeE
Q 048458 327 DLRAQ----FAWQYLGFGAND-EVMLRNDDGELVLYDHKTQEV 364 (386)
Q Consensus 327 ~~~~~----~~~~~~~~~~~g-~i~l~~~~~~l~~ydl~~~~~ 364 (386)
+.... .....+.+.++| .+-+-+..+.+++||+.+.+=
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 11110 111445556666 455666677899999988774
No 146
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.59 E-value=4.6e+02 Score=24.57 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=53.5
Q ss_pred eEEEEEECCCceeeee-c-CCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEE
Q 048458 248 DIIVSFDFGDETFRYR-K-LPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFT 325 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i-~-~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~ 325 (386)
..|..+|+++.+.+.+ . -=.+...+...-..+----.+++|.+...+.. ..+.||.++-...+.+|.. .
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh-------~nLGvy~ldr~~g~~~~L~--~ 148 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH-------ANLGVYSLDRRTGKAEKLS--S 148 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc-------ceeeeEEEcccCCceeecc--C
Confidence 4689999999888776 1 10111122100111111234689999888776 7999999994322222221 1
Q ss_pred eecCC---CceeEEEEEecCCeEEEEecCCeEEEEECCCCeE
Q 048458 326 VDLRA---QFAWQYLGFGANDEVMLRNDDGELVLYDHKTQEV 364 (386)
Q Consensus 326 i~~~~---~~~~~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~ 364 (386)
-+... ..+.-.+++ ++ +......+.+||+.+++|
T Consensus 149 ~ps~KG~~~~D~a~F~i-~~----~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 149 NPSLKGTLVHDYACFGI-NN----FHKGVSGIHCLDLISGKW 185 (339)
T ss_pred CCCcCceEeeeeEEEec-cc----cccCCceEEEEEccCCeE
Confidence 11101 111111122 11 112234699999999999
No 147
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.55 E-value=4.4e+02 Score=24.34 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=41.6
Q ss_pred ccceEEEEEcCCCceeecCCCCCCc---cccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecC
Q 048458 194 EFSDIQVYSLKNNCWRRIQPNVPCI---PCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKL 265 (386)
Q Consensus 194 ~~~~~~vyss~~~~W~~~~~~~p~~---~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~ 265 (386)
....+-+|+..+.+|......+.-. +......-+++.|.+-.- ......+..||..+.+|..++-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~-------~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLN-------GTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEEC-------CCCceeEEEEecCCCeeeecCC
Confidence 3567889999999999887432211 111223445555544322 1134789999999999988754
No 148
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.26 E-value=1.6e+02 Score=21.93 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=18.5
Q ss_pred CeEEEEecCCeEEEEECCCCeEE
Q 048458 343 DEVMLRNDDGELVLYDHKTQEVV 365 (386)
Q Consensus 343 g~i~l~~~~~~l~~ydl~~~~~~ 365 (386)
...++.++..+|+++|++++..+
T Consensus 17 kR~LiLTd~PrL~yvdp~~~~~K 39 (89)
T cd01262 17 KRQLILTNGPRLIYVDPVKKVVK 39 (89)
T ss_pred eeeEEEecCceEEEEcCCcCeEE
Confidence 45666666778999999999987
No 149
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=28.93 E-value=3.7e+02 Score=22.95 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=47.3
Q ss_pred eEEEEEECCCcee-eeecCCCCCCCCCCccceeEEEEeC-CeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEE
Q 048458 248 DIIVSFDFGDETF-RYRKLPDCLYNTDHIHRERSIGILE-KSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFT 325 (386)
Q Consensus 248 ~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~L~~~~-G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~ 325 (386)
+.|..+|+.+... ..+. ... .....+.... +.+.+... .+ ..+.+|.+... ..+..
T Consensus 115 ~~i~~~~~~~~~~~~~~~--~~~------~~i~~~~~~~~~~~l~~~~-~~-------~~i~i~d~~~~------~~~~~ 172 (289)
T cd00200 115 KTIKVWDVETGKCLTTLR--GHT------DWVNSVAFSPDGTFVASSS-QD-------GTIKLWDLRTG------KCVAT 172 (289)
T ss_pred CeEEEEECCCcEEEEEec--cCC------CcEEEEEEcCcCCEEEEEc-CC-------CcEEEEEcccc------cccee
Confidence 6899999985443 2233 111 1122233333 45444433 33 57888887631 11122
Q ss_pred eecCCCceeEEEEEecCC-eEEEEecCCeEEEEECCCCeE
Q 048458 326 VDLRAQFAWQYLGFGAND-EVMLRNDDGELVLYDHKTQEV 364 (386)
Q Consensus 326 i~~~~~~~~~~~~~~~~g-~i~l~~~~~~l~~ydl~~~~~ 364 (386)
+.... ....-+.+.+++ .+++...++.+..||+++++.
T Consensus 173 ~~~~~-~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 173 LTGHT-GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred EecCc-cccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 22111 111445555666 455555566788999886554
No 150
>PRK13684 Ycf48-like protein; Provisional
Probab=28.61 E-value=5e+02 Score=24.44 Aligned_cols=139 Identities=10% Similarity=0.155 Sum_probs=0.0
Q ss_pred EEEcCC--CceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEE-ECCCceeeeecCCCCCCCCCCcc
Q 048458 200 VYSLKN--NCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSF-DFGDETFRYRKLPDCLYNTDHIH 276 (386)
Q Consensus 200 vyss~~--~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~f-D~~~~~~~~i~~P~~~~~~~~~~ 276 (386)
+|.+.+ .+|+.+. ..... ....-...-+|.+...... +.++.- |-..++|+.++.+... .
T Consensus 154 i~~S~DgG~tW~~~~-~~~~g--~~~~i~~~~~g~~v~~g~~--------G~i~~s~~~gg~tW~~~~~~~~~------~ 216 (334)
T PRK13684 154 IYRTTDGGKNWEALV-EDAAG--VVRNLRRSPDGKYVAVSSR--------GNFYSTWEPGQTAWTPHQRNSSR------R 216 (334)
T ss_pred EEEECCCCCCceeCc-CCCcc--eEEEEEECCCCeEEEEeCC--------ceEEEEcCCCCCeEEEeeCCCcc------c
Q ss_pred ceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEEEEecCCeEEE
Q 048458 277 RERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVMLRNDDGELVL 356 (386)
Q Consensus 277 ~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~l~~~~~~l~~ 356 (386)
.......-+|++.++.. ....+-.-.+.+ .+|+....-.........-+++.+++.+++....+.++.
T Consensus 217 l~~i~~~~~g~~~~vg~----------~G~~~~~s~d~G--~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 217 LQSMGFQPDGNLWMLAR----------GGQIRFNDPDDL--ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred ceeeeEcCCCCEEEEec----------CCEEEEccCCCC--CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
Q ss_pred EECCCCeEEEe
Q 048458 357 YDHKTQEVVQC 367 (386)
Q Consensus 357 ydl~~~~~~~v 367 (386)
-.-..++|+.+
T Consensus 285 S~d~G~tW~~~ 295 (334)
T PRK13684 285 SKDGGKTWEKD 295 (334)
T ss_pred eCCCCCCCeEC
No 151
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=28.14 E-value=5e+02 Score=24.25 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=40.4
Q ss_pred CceeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEe-
Q 048458 206 NCWRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGIL- 284 (386)
Q Consensus 206 ~~W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~- 284 (386)
.+|.......+... ...-..|..++.--|+... . +.|+--.=..++|+.++++..... ....+..+
T Consensus 47 ~tW~~~~~~~~~~~-~~~l~~I~f~~~~g~ivG~-~------g~ll~T~DgG~tW~~v~l~~~lpg-----s~~~i~~l~ 113 (302)
T PF14870_consen 47 KTWQPVSLDLDNPF-DYHLNSISFDGNEGWIVGE-P------GLLLHTTDGGKTWERVPLSSKLPG-----SPFGITALG 113 (302)
T ss_dssp SS-EE-----S------EEEEEEEETTEEEEEEE-T------TEEEEESSTTSS-EE----TT-SS------EEEEEEEE
T ss_pred ccccccccCCCccc-eeeEEEEEecCCceEEEcC-C------ceEEEecCCCCCcEEeecCCCCCC-----CeeEEEEcC
Confidence 58987762222110 1111245544444466655 2 456666557889999987654432 22334444
Q ss_pred CCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEE
Q 048458 285 EKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLF 324 (386)
Q Consensus 285 ~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~ 324 (386)
++...++... =.|++-.+.| .+|..+.
T Consensus 114 ~~~~~l~~~~-----------G~iy~T~DgG--~tW~~~~ 140 (302)
T PF14870_consen 114 DGSAELAGDR-----------GAIYRTTDGG--KTWQAVV 140 (302)
T ss_dssp TTEEEEEETT-------------EEEESSTT--SSEEEEE
T ss_pred CCcEEEEcCC-----------CcEEEeCCCC--CCeeEcc
Confidence 4544444322 2377777643 6898754
No 152
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=28.13 E-value=3.6e+02 Score=24.65 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=38.2
Q ss_pred EECCeEEEEEEeecCCCCCce-EEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCC
Q 048458 228 HLNGAVHWMAIRKESDGTNKD-IIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHT 296 (386)
Q Consensus 228 ~~~G~lywl~~~~~~~~~~~~-~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~ 296 (386)
+.+|+||..+.. ..++..+ .+..-+...+.|+.+.+|..+. ....-.+..++.|.++.....
T Consensus 198 yY~g~LyLtTRg--t~~~~~GS~L~rs~d~G~~w~slrfp~nvH-----htnlPFakvgD~l~mFgsERA 260 (367)
T PF12217_consen 198 YYDGVLYLTTRG--TLPTNPGSSLHRSDDNGQNWSSLRFPNNVH-----HTNLPFAKVGDVLYMFGSERA 260 (367)
T ss_dssp EETTEEEEEEEE--S-TTS---EEEEESSTTSS-EEEE-TT--------SS---EEEETTEEEEEEE-SS
T ss_pred hhCCEEEEEEcC--cCCCCCcceeeeecccCCchhhcccccccc-----ccCCCceeeCCEEEEEecccc
Confidence 789999988876 3233334 4555666788999999997664 466777888999999987543
No 153
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.37 E-value=5.2e+02 Score=24.20 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=40.9
Q ss_pred cceEEEEEcCCCce-eecCCCCCCccccCCCceEE-ECCeEEEEEEeecCCCCCceEEEEEECCCceeeee-cCCCCC
Q 048458 195 FSDIQVYSLKNNCW-RRIQPNVPCIPCLSSNSTVH-LNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYR-KLPDCL 269 (386)
Q Consensus 195 ~~~~~vyss~~~~W-~~~~~~~p~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~ 269 (386)
...+.+++..++.= ..+. . +. ...+...+++ -||.+.+.+.. +. ...++.|-++|.. ..++.+ +.|..-
T Consensus 27 G~~~~v~D~~~g~~~~~~~-a-~~-gRHFyGHg~fs~dG~~LytTEn-d~-~~g~G~IgVyd~~-~~~~ri~E~~s~G 98 (305)
T PF07433_consen 27 GTFALVFDCRTGQLLQRLW-A-PP-GRHFYGHGVFSPDGRLLYTTEN-DY-ETGRGVIGVYDAA-RGYRRIGEFPSHG 98 (305)
T ss_pred CcEEEEEEcCCCceeeEEc-C-CC-CCEEecCEEEcCCCCEEEEecc-cc-CCCcEEEEEEECc-CCcEEEeEecCCC
Confidence 45678888888642 2222 1 11 1233334555 57887776655 32 3456899999999 556655 666543
No 154
>PRK05137 tolB translocation protein TolB; Provisional
Probab=26.27 E-value=6.2e+02 Score=24.69 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=68.1
Q ss_pred cceEEEEEcCCCceeecCCCCCCccccCCCceEEECCe-EEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCC
Q 048458 195 FSDIQVYSLKNNCWRRIQPNVPCIPCLSSNSTVHLNGA-VHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTD 273 (386)
Q Consensus 195 ~~~~~vyss~~~~W~~~~~~~p~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~ 273 (386)
...+++++.+++.-+.+. ..+.. .......-||. +++.... . + ...|..+|..++..+.+......
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt-~~~~~---~~~~~~spDG~~i~f~s~~-~-g---~~~Iy~~d~~g~~~~~lt~~~~~---- 335 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLT-DSPAI---DTSPSYSPDGSQIVFESDR-S-G---SPQLYVMNADGSNPRRISFGGGR---- 335 (435)
T ss_pred CceEEEEECCCCceEEcc-CCCCc---cCceeEcCCCCEEEEEECC-C-C---CCeEEEEECCCCCeEEeecCCCc----
Confidence 456777788777665554 21110 11112233554 4443322 1 1 24688889887766655321111
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCe-EEEEec-C
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDE-VMLRND-D 351 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~-i~l~~~-~ 351 (386)
.......-.+..|+++.. .. ....||+++-.+ +. .+..+ .... .....+.+||+ |++... .
T Consensus 336 --~~~~~~SpdG~~ia~~~~-~~-------~~~~i~~~d~~~--~~-~~~lt--~~~~--~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 336 --YSTPVWSPRGDLIAFTKQ-GG-------GQFSIGVMKPDG--SG-ERILT--SGFL--VEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred --ccCeEECCCCCEEEEEEc-CC-------CceEEEEEECCC--Cc-eEecc--CCCC--CCCCeECCCCCEEEEEEccC
Confidence 112222222334444433 22 245666666322 22 22111 1111 12334566775 555432 1
Q ss_pred -----CeEEEEECCCCeEEEeee
Q 048458 352 -----GELVLYDHKTQEVVQCES 369 (386)
Q Consensus 352 -----~~l~~ydl~~~~~~~v~~ 369 (386)
..|+.+|+++++.+.+..
T Consensus 399 ~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CCCCcceEEEEECCCCceEEccC
Confidence 369999999988876643
No 155
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=26.11 E-value=5.7e+02 Score=24.25 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=65.9
Q ss_pred EEEEEcCCCc--eeecCCCCCCccccCCCceEEECCeEEEEEEeecCCCCCceEEEEEECC--CceeeeecCCCCCCCCC
Q 048458 198 IQVYSLKNNC--WRRIQPNVPCIPCLSSNSTVHLNGAVHWMAIRKESDGTNKDIIVSFDFG--DETFRYRKLPDCLYNTD 273 (386)
Q Consensus 198 ~~vyss~~~~--W~~~~~~~p~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~il~fD~~--~~~~~~i~~P~~~~~~~ 273 (386)
+.-++.+++. |+... .. .........+.-+|++|.-... +.+.+||.. ++.|+. +.+. ..
T Consensus 80 i~A~d~~~g~~~W~~~~-~~--~~~~~~~~~~~~~G~i~~g~~~--------g~~y~ld~~~G~~~W~~-~~~~-~~--- 143 (370)
T COG1520 80 IFALNPDTGLVKWSYPL-LG--AVAQLSGPILGSDGKIYVGSWD--------GKLYALDASTGTLVWSR-NVGG-SP--- 143 (370)
T ss_pred EEEEeCCCCcEEecccC-cC--cceeccCceEEeCCeEEEeccc--------ceEEEEECCCCcEEEEE-ecCC-Ce---
Confidence 3444444433 76554 11 1112233345568998876655 579999995 344543 2222 00
Q ss_pred CccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEe--ecCCCceeEEEEEecCCeEEEEec-
Q 048458 274 HIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTV--DLRAQFAWQYLGFGANDEVMLRND- 350 (386)
Q Consensus 274 ~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i--~~~~~~~~~~~~~~~~g~i~l~~~- 350 (386)
......+..+|.++.... .. .+..++.......|+....- +..... .|. ..++.+|+...
T Consensus 144 --~~~~~~v~~~~~v~~~s~-~g----------~~~al~~~tG~~~W~~~~~~~~~~~~~~--~~~--~~~~~vy~~~~~ 206 (370)
T COG1520 144 --YYASPPVVGDGTVYVGTD-DG----------HLYALNADTGTLKWTYETPAPLSLSIYG--SPA--IASGTVYVGSDG 206 (370)
T ss_pred --EEecCcEEcCcEEEEecC-CC----------eEEEEEccCCcEEEEEecCCcccccccc--Cce--eecceEEEecCC
Confidence 011112233344433331 11 12344433223456654332 111111 233 34556776655
Q ss_pred -CCeEEEEECCCCeEEEe
Q 048458 351 -DGELVLYDHKTQEVVQC 367 (386)
Q Consensus 351 -~~~l~~ydl~~~~~~~v 367 (386)
++.++.+|+++++..+-
T Consensus 207 ~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 207 YDGILYALNAEDGTLKWS 224 (370)
T ss_pred CcceEEEEEccCCcEeee
Confidence 45799999999987665
No 156
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.47 E-value=6.7e+02 Score=26.43 Aligned_cols=98 Identities=13% Similarity=0.277 Sum_probs=47.5
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEeCCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEee
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGILEKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTVD 327 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~ 327 (386)
..|...|+.+.+.. +|........ .....-.+.++. .++..... .-+.+|.++....-.+|.-+++-|
T Consensus 40 d~Vi~idv~t~~~~---l~s~~~ed~d-~ita~~l~~d~~-~L~~a~rs-------~llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 40 DRVIIIDVATGSIA---LPSGSNEDED-EITALALTPDEE-VLVTASRS-------QLLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred ceEEEEEccCCcee---cccCCccchh-hhheeeecCCcc-EEEEeecc-------ceEEEEEcccchHhHhHhhccCCC
Confidence 46888899888775 3332221110 111222233333 33333333 589999998643334676544322
Q ss_pred cCCCceeEEEEEecCCeEEEEec--CCeEEEEECCCCeE
Q 048458 328 LRAQFAWQYLGFGANDEVMLRND--DGELVLYDHKTQEV 364 (386)
Q Consensus 328 ~~~~~~~~~~~~~~~g~i~l~~~--~~~l~~ydl~~~~~ 364 (386)
. ..+++++.+ -++.+. ++.+.++|.+.+..
T Consensus 108 v------i~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 108 V------ITMAFDPTG-TLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred e------EEEEEcCCC-ceEEeccccceEEEEEeeCCEE
Confidence 1 334444444 333322 33466666665554
No 157
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=25.26 E-value=26 Score=31.78 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=29.4
Q ss_pred CCCCCcHHHHHHHHccCC-ccccceeeeccccccccccCh
Q 048458 1 MSKSLPAKFMLETLLKLP-VKTLTRFKCVSKQWHSVISNP 39 (386)
Q Consensus 1 ~~~~LP~dll~~IL~rLP-~~sl~r~~~VcK~W~~liss~ 39 (386)
++.+||.+++.+||.||| -.+|...+-|--.-..++++.
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 357899999999999999 778887777655544454443
No 158
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=25.10 E-value=4.7e+02 Score=26.39 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=25.1
Q ss_pred EEEEEecCCeEEEEec-CCeEEEEECCCCeEEEe
Q 048458 335 QYLGFGANDEVMLRND-DGELVLYDHKTQEVVQC 367 (386)
Q Consensus 335 ~~~~~~~~g~i~l~~~-~~~l~~ydl~~~~~~~v 367 (386)
..++..+|+..+...+ .++++.||.++++.+..
T Consensus 491 T~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN 524 (603)
T ss_pred eEEEECCCCcEEEEeccCCcEEEEEcccCceecc
Confidence 6678888887666655 46799999999988443
No 159
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=25.09 E-value=4.6e+02 Score=26.72 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=21.9
Q ss_pred EEEEEecCC-eEEEEecCCeEEEEECCCCeE
Q 048458 335 QYLGFGAND-EVMLRNDDGELVLYDHKTQEV 364 (386)
Q Consensus 335 ~~~~~~~~g-~i~l~~~~~~l~~ydl~~~~~ 364 (386)
..+.+.++| ++++.....+++.+|+..++-
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 456677888 577766666799999887764
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=23.55 E-value=6.5e+02 Score=25.37 Aligned_cols=61 Identities=10% Similarity=0.230 Sum_probs=39.4
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCCCcee-EEEEEecCCeEEEEecCCeEEEEECCCCeEEEee
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRAQFAW-QYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~~v~ 368 (386)
.++..|.+.. .+-.++..+--+..-.+ ..+++.+||+++--..++.+..|+..++++.+-.
T Consensus 222 ~H~~Fw~~~~----~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 222 GHLYFWTLRG----GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred ceEEEEEccC----CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEe
Confidence 6899998874 33344332221122233 5667778888887766778999999888875543
No 161
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.52 E-value=5.1e+02 Score=22.77 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=26.3
Q ss_pred EEEEEecCCeEEEEecCCeEEEEECCCCeEEEeeecCc
Q 048458 335 QYLGFGANDEVMLRNDDGELVLYDHKTQEVVQCESSNW 372 (386)
Q Consensus 335 ~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~~v~~~~~ 372 (386)
.-..+..+|..++...+++.|.||.+=+.|.+|.=+.|
T Consensus 70 ~~~~lt~~G~PiV~lsng~~y~y~~~L~~W~~vsd~w~ 107 (219)
T PF07569_consen 70 TSCSLTSNGVPIVTLSNGDSYSYSPDLGCWIRVSDSWW 107 (219)
T ss_pred EEEEEcCCCCEEEEEeCCCEEEeccccceeEEeccchh
Confidence 34555677864444445679999999999988765434
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=23.13 E-value=4.9e+02 Score=26.16 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEecCCeEEEEe-cCCeEEEEECCCCe
Q 048458 335 QYLGFGANDEVMLRN-DDGELVLYDHKTQE 363 (386)
Q Consensus 335 ~~~~~~~~g~i~l~~-~~~~l~~ydl~~~~ 363 (386)
.-+++.++|.++... ..++++.||++..+
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecccCC
Confidence 345677777555443 35679999998877
No 163
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.30 E-value=7e+02 Score=23.90 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=27.1
Q ss_pred ceeEEEEEecCC-eEEEEec----------CCeEEEEECCCCeE-EEeeec
Q 048458 332 FAWQYLGFGAND-EVMLRND----------DGELVLYDHKTQEV-VQCESS 370 (386)
Q Consensus 332 ~~~~~~~~~~~g-~i~l~~~----------~~~l~~ydl~~~~~-~~v~~~ 370 (386)
..++++++++++ .+|+.+. ..++..+|.++++. ..+..+
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG 298 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG 298 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC
Confidence 345889999876 5666431 24699999999996 445553
No 164
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=22.14 E-value=6.1e+02 Score=23.15 Aligned_cols=99 Identities=10% Similarity=0.189 Sum_probs=56.0
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEe-CCeEEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEEe
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGIL-EKSIALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFTV 326 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i 326 (386)
+.|-+.|+.+..+....+|... .....|.+. +|+.....- .. ...-+|.|-.......-+-+..+
T Consensus 146 g~irvWDl~~~~c~~~liPe~~------~~i~sl~v~~dgsml~a~n-nk-------G~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDD------TSIQSLTVMPDGSMLAAAN-NK-------GNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred CcEEEEEccCCccccccCCCCC------cceeeEEEcCCCcEEEEec-CC-------ccEEEEEccCCCccccceEhhhe
Confidence 7899999999999998888876 244556655 555444433 33 57889988642111122222222
Q ss_pred ecCCCceeEE-EEEecCCeEEEEe-cCCeEEEEECCCC
Q 048458 327 DLRAQFAWQY-LGFGANDEVMLRN-DDGELVLYDHKTQ 362 (386)
Q Consensus 327 ~~~~~~~~~~-~~~~~~g~i~l~~-~~~~l~~ydl~~~ 362 (386)
+... .+.. .-.+++++.+... .+..+.+||.++-
T Consensus 212 ~ah~--~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 212 QAHN--GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred eccc--ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 2221 2111 1223455544433 3345888888887
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=21.46 E-value=6.2e+02 Score=23.00 Aligned_cols=112 Identities=10% Similarity=0.138 Sum_probs=56.6
Q ss_pred CeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEEe-CCeEEEEEeeCCCCCCCCCCEEEEE
Q 048458 231 GAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGIL-EKSIALFVSCHTEDNTAGLGICSVY 309 (386)
Q Consensus 231 G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~~-~G~L~lv~~~~~~~~~~~~~~i~iW 309 (386)
|.+...+++ +.+...|+++.+++..-- . + .....-++. +-.--+..+..+ .+++||
T Consensus 127 nSi~~AgGD--------~~~y~~dlE~G~i~r~~r--G---H---tDYvH~vv~R~~~~qilsG~ED-------GtvRvW 183 (325)
T KOG0649|consen 127 NSILFAGGD--------GVIYQVDLEDGRIQREYR--G---H---TDYVHSVVGRNANGQILSGAED-------GTVRVW 183 (325)
T ss_pred CcEEEecCC--------eEEEEEEecCCEEEEEEc--C---C---cceeeeeeecccCcceeecCCC-------ccEEEE
Confidence 667766655 799999999999986521 1 1 112222222 111123334444 689999
Q ss_pred EEeecCCCcceEEEEEeecC---C--Ccee--EEEEEecCCeEEEEecCCeEEEEECCCCeEE-EeeecC
Q 048458 310 VMKENIEVEHWINLFTVDLR---A--QFAW--QYLGFGANDEVMLRNDDGELVLYDHKTQEVV-QCESSN 371 (386)
Q Consensus 310 ~l~~~~~~~~W~~~~~i~~~---~--~~~~--~~~~~~~~g~i~l~~~~~~l~~ydl~~~~~~-~v~~~~ 371 (386)
-++.. + ....|... . ...+ ...+...+.+-+++....++-.|++...+-. .+.|+-
T Consensus 184 d~kt~---k---~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 184 DTKTQ---K---HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred ecccc---c---eeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEeccc
Confidence 87731 1 11122211 1 1112 2333443445555555556777887777643 345543
No 166
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.37 E-value=3.6e+02 Score=25.36 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=37.8
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEecCCeEE-EEecCCeEEEEECCCCeEEEee
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFGANDEVM-LRNDDGELVLYDHKTQEVVQCE 368 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~g~i~-l~~~~~~l~~ydl~~~~~~~v~ 368 (386)
.++.||.|.+- =+-+.+|...... .-+++...+.|+ +-.+++++-.||++.+.+-.+.
T Consensus 378 rTvKvWdLrNM-----RsplATIRtdS~~--NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 378 RTVKVWDLRNM-----RSPLATIRTDSPA--NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred ceEEEeeeccc-----cCcceeeecCCcc--ceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 78999988851 2445666654422 234555555444 4456678999999999886664
No 167
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=21.10 E-value=4.7e+02 Score=24.43 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=34.7
Q ss_pred CEEEEEEEeecCCCcceEEEEEeecCCCceeEEEEEe--cCCeEEEE-ecCCeEEEEECCCCeE-EEeee
Q 048458 304 GICSVYVMKENIEVEHWINLFTVDLRAQFAWQYLGFG--ANDEVMLR-NDDGELVLYDHKTQEV-VQCES 369 (386)
Q Consensus 304 ~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--~~g~i~l~-~~~~~l~~ydl~~~~~-~~v~~ 369 (386)
..+-+|...++. +.-|..+- .. . -++.+. .|+..++. ..+..++.||.++++. ++...
T Consensus 69 r~I~LWnv~gdc-eN~~~lkg----Hs-g--AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~ 130 (338)
T KOG0265|consen 69 RAIVLWNVYGDC-ENFWVLKG----HS-G--AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG 130 (338)
T ss_pred ceEEEEeccccc-cceeeecc----cc-c--eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence 589999865433 34587761 00 0 333333 35666655 4566799999999985 44443
No 168
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.44 E-value=7.1e+02 Score=23.27 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=34.9
Q ss_pred eEEECCeEEEEEEeecCCCCCceEEEEEECCCceeeeecCCCCCCCCCCccceeEEEE-eCCeEEEEEeeC
Q 048458 226 TVHLNGAVHWMAIRKESDGTNKDIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIGI-LEKSIALFVSCH 295 (386)
Q Consensus 226 ~v~~~G~lywl~~~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~~-~~G~L~lv~~~~ 295 (386)
.+=.+|.+|..+.. + ...|.+|++..+....+.+|.... ..+.++- ....|++.....
T Consensus 219 ~vDadG~lw~~a~~-~-----g~~v~~~~pdG~l~~~i~lP~~~~------t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 219 AVDADGNLWVAAVW-G-----GGRVVRFNPDGKLLGEIKLPVKRP------TNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEeCCCCEEEeccc-C-----CceEEEECCCCcEEEEEECCCCCC------ccceEeCCCcCEEEEEecCC
Confidence 45566777643332 1 148999999999999999995331 2233332 235566555544
No 169
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=20.32 E-value=7.3e+02 Score=23.38 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=57.7
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCCCccceeEEE-EeCCe-EEEEEeeCCCCCCCCCCEEEEEEEeecCCCcceEEEEE
Q 048458 248 DIIVSFDFGDETFRYRKLPDCLYNTDHIHRERSIG-ILEKS-IALFVSCHTEDNTAGLGICSVYVMKENIEVEHWINLFT 325 (386)
Q Consensus 248 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~L~-~~~G~-L~lv~~~~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~ 325 (386)
-.+.++|+++++...+..|......+ .....+. .-+++ |.+....... +.+.+...+-.....++....+
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~--~yl~~v~W~~d~~~l~~~~~nR~q------~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQD--YYLTRVGWSPDGKRLWVQWLNRDQ------NRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSS--EEEEEEEEEETTEEEEEEEEETTS------TEEEEEEEEECTTTCEEEEEEE
T ss_pred eEEEEEECCCCcEEEeeeccccCCCc--cCcccceecCCCcEEEEEEcccCC------CEEEEEEEECCCCceeEEEEec
Confidence 57889999999888887774322111 1222221 23555 7777766654 6777777764222233443222
Q ss_pred eecCCCceeEEEEEe-cCC-eEEEE-ecC--CeEEEEECCCCeEEEeeec
Q 048458 326 VDLRAQFAWQYLGFG-AND-EVMLR-NDD--GELVLYDHKTQEVVQCESS 370 (386)
Q Consensus 326 i~~~~~~~~~~~~~~-~~g-~i~l~-~~~--~~l~~ydl~~~~~~~v~~~ 370 (386)
-+.-.... .+..+. +++ .++.. ..+ .+|+.|+.++++.+.+--+
T Consensus 230 ~~~Wv~~~-~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 230 SDGWVDVY-DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp SSSSSSSS-SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S
T ss_pred CCcceeee-cccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC
Confidence 11111111 333333 444 44443 332 3699999999987655443
Done!