Query 048459
Match_columns 362
No_of_seqs 306 out of 2152
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3608 Zn finger proteins [Ge 100.0 4.3E-28 9.4E-33 202.7 13.5 265 24-312 69-378 (467)
2 KOG3608 Zn finger proteins [Ge 99.9 5.4E-28 1.2E-32 202.1 10.4 290 25-334 25-371 (467)
3 KOG1074 Transcriptional repres 99.9 7.1E-28 1.5E-32 221.9 3.1 203 93-312 604-933 (958)
4 KOG2462 C2H2-type Zn-finger pr 99.9 6.6E-27 1.4E-31 190.9 5.4 140 160-310 127-267 (279)
5 KOG2462 C2H2-type Zn-finger pr 99.9 6.1E-26 1.3E-30 185.3 6.8 140 19-187 125-265 (279)
6 KOG3623 Homeobox transcription 99.9 3.5E-24 7.7E-29 194.6 8.4 110 22-147 208-331 (1007)
7 KOG1074 Transcriptional repres 99.9 3.4E-24 7.3E-29 197.9 3.7 207 66-284 605-935 (958)
8 KOG3623 Homeobox transcription 99.8 4.2E-20 9E-25 168.4 6.3 96 21-119 237-332 (1007)
9 KOG3576 Ovo and related transc 99.6 4.1E-17 9E-22 126.9 1.5 123 62-190 113-237 (267)
10 KOG3576 Ovo and related transc 99.6 2.2E-16 4.7E-21 122.9 3.9 114 19-150 112-237 (267)
11 PLN03086 PRLI-interacting fact 99.3 1E-11 2.2E-16 114.9 9.0 150 122-311 406-565 (567)
12 PLN03086 PRLI-interacting fact 98.9 2.3E-09 5E-14 99.5 8.3 98 67-187 454-562 (567)
13 PHA00733 hypothetical protein 98.9 2.1E-09 4.5E-14 81.3 4.8 80 66-150 40-124 (128)
14 PHA00733 hypothetical protein 98.9 1.5E-09 3.4E-14 82.0 3.5 54 252-312 72-125 (128)
15 KOG3993 Transcription factor ( 98.8 8.8E-10 1.9E-14 95.8 0.1 170 66-247 267-483 (500)
16 KOG3993 Transcription factor ( 98.8 1.4E-09 3E-14 94.6 -0.3 177 22-222 265-483 (500)
17 PHA02768 hypothetical protein; 98.7 1.1E-08 2.4E-13 63.3 2.4 44 253-303 5-48 (55)
18 PHA02768 hypothetical protein; 98.7 9.5E-09 2.1E-13 63.6 2.1 43 67-113 6-48 (55)
19 PF13465 zf-H2C2_2: Zinc-finge 98.5 6.2E-08 1.3E-12 51.2 2.3 26 270-298 1-26 (26)
20 PHA00732 hypothetical protein 98.3 3.4E-07 7.3E-12 62.6 2.7 48 24-90 1-48 (79)
21 PF13465 zf-H2C2_2: Zinc-finge 98.3 6E-07 1.3E-11 47.4 2.4 26 81-108 1-26 (26)
22 PHA00616 hypothetical protein 98.3 4.1E-07 8.9E-12 53.5 1.8 34 66-99 1-34 (44)
23 PF05605 zf-Di19: Drought indu 98.2 2.2E-06 4.7E-11 54.4 4.5 52 24-90 2-53 (54)
24 PHA00732 hypothetical protein 98.1 3.7E-06 8E-11 57.5 3.1 47 253-309 1-47 (79)
25 PF05605 zf-Di19: Drought indu 98.0 4.4E-06 9.5E-11 53.0 3.1 50 254-310 3-53 (54)
26 PHA00616 hypothetical protein 98.0 2.7E-06 5.9E-11 50.1 1.1 34 253-289 1-34 (44)
27 PF00096 zf-C2H2: Zinc finger, 97.9 9.2E-06 2E-10 41.5 2.0 23 25-47 1-23 (23)
28 PF00096 zf-C2H2: Zinc finger, 97.8 1E-05 2.2E-10 41.4 1.4 22 67-88 1-22 (23)
29 COG5189 SFP1 Putative transcri 97.7 1.6E-05 3.5E-10 67.2 1.8 55 251-307 347-419 (423)
30 PF13894 zf-C2H2_4: C2H2-type 97.7 3.4E-05 7.5E-10 39.7 2.2 24 25-48 1-24 (24)
31 COG5236 Uncharacterized conser 97.6 0.0001 2.2E-09 63.2 5.2 146 122-281 150-307 (493)
32 PF13912 zf-C2H2_6: C2H2-type 97.6 4.3E-05 9.3E-10 40.7 1.6 26 24-49 1-26 (27)
33 PF12756 zf-C2H2_2: C2H2 type 97.5 6.4E-05 1.4E-09 54.7 2.7 25 26-50 1-25 (100)
34 COG5189 SFP1 Putative transcri 97.5 4.5E-05 9.8E-10 64.5 1.4 63 122-186 348-419 (423)
35 PF13894 zf-C2H2_4: C2H2-type 97.5 5E-05 1.1E-09 39.1 1.0 23 285-309 1-23 (24)
36 PF13912 zf-C2H2_6: C2H2-type 97.4 9.3E-05 2E-09 39.4 1.3 25 284-310 1-25 (27)
37 PF12756 zf-C2H2_2: C2H2 type 97.3 0.00016 3.5E-09 52.5 2.3 72 69-148 2-73 (100)
38 PF09237 GAGA: GAGA factor; I 96.9 0.00083 1.8E-08 40.5 2.3 32 63-94 21-52 (54)
39 COG5236 Uncharacterized conser 96.8 0.0011 2.4E-08 57.0 3.4 135 24-190 151-306 (493)
40 smart00355 ZnF_C2H2 zinc finge 96.8 0.0012 2.6E-08 34.4 2.2 24 25-48 1-24 (26)
41 smart00355 ZnF_C2H2 zinc finge 96.7 0.0017 3.7E-08 33.8 2.4 24 67-90 1-24 (26)
42 KOG2231 Predicted E3 ubiquitin 96.6 0.0033 7.1E-08 60.1 5.3 99 165-279 117-236 (669)
43 PF12874 zf-met: Zinc-finger o 96.6 0.0013 2.9E-08 34.1 1.6 23 25-47 1-23 (25)
44 KOG2231 Predicted E3 ubiquitin 96.5 0.008 1.7E-07 57.5 7.3 23 125-149 184-206 (669)
45 PF13909 zf-H2C2_5: C2H2-type 96.5 0.0023 5E-08 32.8 2.0 24 25-49 1-24 (24)
46 PF12874 zf-met: Zinc-finger o 96.5 0.0012 2.6E-08 34.3 0.9 22 67-88 1-22 (25)
47 KOG4173 Alpha-SNAP protein [In 96.0 0.004 8.7E-08 49.6 1.9 83 19-118 74-168 (253)
48 PF12171 zf-C2H2_jaz: Zinc-fin 95.9 0.0022 4.8E-08 34.0 0.0 23 24-46 1-23 (27)
49 PF09237 GAGA: GAGA factor; I 95.8 0.014 3E-07 35.4 3.3 36 17-52 17-52 (54)
50 PF13909 zf-H2C2_5: C2H2-type 95.7 0.0038 8.3E-08 32.0 0.5 17 259-276 4-20 (24)
51 KOG4173 Alpha-SNAP protein [In 95.4 0.021 4.5E-07 45.7 3.7 99 160-283 76-174 (253)
52 COG5048 FOG: Zn-finger [Genera 95.3 0.0028 6.1E-08 59.4 -1.5 150 65-221 288-442 (467)
53 KOG2482 Predicted C2H2-type Zn 95.2 0.071 1.5E-06 46.2 6.7 25 26-50 30-56 (423)
54 PF12171 zf-C2H2_jaz: Zinc-fin 95.0 0.012 2.5E-07 31.2 1.1 22 285-308 2-23 (27)
55 KOG2482 Predicted C2H2-type Zn 94.9 0.14 3.1E-06 44.5 7.7 143 160-308 141-356 (423)
56 PF13913 zf-C2HC_2: zinc-finge 94.7 0.03 6.5E-07 28.9 2.1 22 24-46 2-23 (25)
57 KOG2785 C2H2-type Zn-finger pr 94.7 0.17 3.6E-06 44.9 7.8 73 198-277 167-242 (390)
58 PRK04860 hypothetical protein; 94.6 0.029 6.4E-07 44.2 2.9 40 253-301 119-158 (160)
59 PF13913 zf-C2HC_2: zinc-finge 94.4 0.042 9.1E-07 28.4 2.2 18 225-242 4-21 (25)
60 COG5048 FOG: Zn-finger [Genera 94.0 0.0095 2E-07 55.8 -1.3 149 23-193 288-446 (467)
61 PRK04860 hypothetical protein; 93.9 0.029 6.2E-07 44.2 1.4 38 66-109 119-156 (160)
62 smart00451 ZnF_U1 U1-like zinc 93.0 0.069 1.5E-06 30.1 1.7 24 24-47 3-26 (35)
63 KOG1146 Homeobox protein [Gene 92.6 0.04 8.6E-07 56.3 0.4 22 67-88 466-487 (1406)
64 smart00451 ZnF_U1 U1-like zinc 92.3 0.092 2E-06 29.5 1.6 22 67-88 4-25 (35)
65 KOG2785 C2H2-type Zn-finger pr 91.3 0.22 4.8E-06 44.2 3.5 32 19-50 161-192 (390)
66 KOG2893 Zn finger protein [Gen 90.0 0.11 2.4E-06 42.7 0.5 48 254-310 11-58 (341)
67 COG4049 Uncharacterized protei 88.7 0.26 5.7E-06 30.4 1.3 33 18-50 11-43 (65)
68 PF12013 DUF3505: Protein of u 88.4 1.5 3.4E-05 32.2 5.6 28 21-49 8-35 (109)
69 KOG1146 Homeobox protein [Gene 88.3 0.14 3.1E-06 52.5 -0.0 69 67-151 1285-1354(1406)
70 COG4049 Uncharacterized protei 87.2 0.28 6E-06 30.3 0.8 27 62-88 13-39 (65)
71 KOG2893 Zn finger protein [Gen 86.6 0.21 4.6E-06 41.0 0.1 41 69-115 13-53 (341)
72 PF09986 DUF2225: Uncharacteri 85.5 0.17 3.7E-06 42.3 -1.0 58 22-79 3-61 (214)
73 PF12013 DUF3505: Protein of u 84.7 2 4.3E-05 31.6 4.5 23 199-222 13-35 (109)
74 KOG2186 Cell growth-regulating 82.0 0.72 1.6E-05 38.5 1.3 46 224-276 4-49 (276)
75 PF09538 FYDLN_acid: Protein o 81.4 0.77 1.7E-05 33.6 1.1 26 199-233 11-36 (108)
76 KOG2186 Cell growth-regulating 80.6 1.1 2.3E-05 37.5 1.8 50 67-121 4-53 (276)
77 TIGR00622 ssl1 transcription f 78.1 7.2 0.00016 28.6 5.2 24 163-188 81-104 (112)
78 PF04959 ARS2: Arsenite-resist 75.6 1.3 2.8E-05 36.7 1.0 38 15-52 68-105 (214)
79 PF02892 zf-BED: BED zinc fing 74.5 2.5 5.4E-05 25.2 1.8 28 20-47 12-43 (45)
80 smart00734 ZnF_Rad18 Rad18-lik 74.5 3.2 7E-05 21.5 1.9 19 225-243 3-21 (26)
81 KOG4377 Zn-finger protein [Gen 72.5 1.6 3.4E-05 39.3 0.7 67 67-136 272-360 (480)
82 TIGR00373 conserved hypothetic 69.0 3.3 7.1E-05 32.8 1.8 35 19-76 104-138 (158)
83 PF05443 ROS_MUCR: ROS/MUCR tr 68.6 4.1 8.9E-05 31.0 2.2 34 16-52 64-97 (132)
84 smart00834 CxxC_CXXC_SSSS Puta 68.3 0.92 2E-05 26.4 -1.1 9 199-207 7-15 (41)
85 TIGR02605 CxxC_CxxC_SSSS putat 67.3 1.1 2.4E-05 27.8 -1.0 12 197-208 5-16 (52)
86 cd00350 rubredoxin_like Rubred 66.7 4.6 0.0001 22.3 1.6 10 283-294 16-25 (33)
87 smart00531 TFIIE Transcription 66.6 2.8 6.1E-05 32.7 1.0 39 20-76 95-133 (147)
88 PRK06266 transcription initiat 65.7 4.4 9.5E-05 32.8 1.9 35 20-77 113-147 (178)
89 PF09723 Zn-ribbon_8: Zinc rib 65.5 0.82 1.8E-05 27.0 -1.7 10 198-207 6-15 (42)
90 smart00614 ZnF_BED BED zinc fi 65.5 5.1 0.00011 24.6 1.8 24 23-46 17-45 (50)
91 TIGR02300 FYDLN_acid conserved 65.3 3.7 8E-05 30.6 1.3 26 199-233 11-36 (129)
92 TIGR02098 MJ0042_CXXC MJ0042 f 63.5 7.8 0.00017 22.0 2.2 11 284-296 25-35 (38)
93 smart00531 TFIIE Transcription 63.2 5.9 0.00013 30.9 2.2 34 197-232 99-132 (147)
94 KOG4124 Putative transcription 62.8 1.7 3.6E-05 38.2 -1.0 55 251-307 347-419 (442)
95 COG5112 UFD2 U1-like Zn-finger 62.5 6.9 0.00015 27.9 2.2 39 8-46 39-77 (126)
96 PF09538 FYDLN_acid: Protein o 61.7 3.9 8.5E-05 29.9 0.9 28 318-347 12-39 (108)
97 PF13717 zinc_ribbon_4: zinc-r 61.3 10 0.00022 21.5 2.4 33 254-296 3-35 (36)
98 PF10571 UPF0547: Uncharacteri 59.0 7 0.00015 20.3 1.3 8 259-266 18-25 (26)
99 KOG3408 U1-like Zn-finger-cont 58.9 8.7 0.00019 28.3 2.2 33 14-46 47-79 (129)
100 KOG0717 Molecular chaperone (D 58.9 5.2 0.00011 36.8 1.4 22 25-46 293-314 (508)
101 KOG4377 Zn-finger protein [Gen 56.6 7.8 0.00017 35.1 2.0 109 201-312 277-429 (480)
102 TIGR00622 ssl1 transcription f 51.8 28 0.00061 25.6 3.9 91 23-120 14-105 (112)
103 KOG2272 Focal adhesion protein 51.6 8.1 0.00018 32.4 1.3 131 122-267 98-233 (332)
104 PF13719 zinc_ribbon_5: zinc-r 51.6 18 0.00039 20.5 2.4 30 259-296 6-35 (37)
105 PF15269 zf-C2H2_7: Zinc-finge 50.9 11 0.00024 22.2 1.4 22 67-88 21-42 (54)
106 PF11789 zf-Nse: Zinc-finger o 50.0 18 0.0004 22.9 2.4 34 252-292 23-56 (57)
107 PF12907 zf-met2: Zinc-binding 48.4 10 0.00022 22.1 0.9 14 269-282 18-31 (40)
108 KOG4167 Predicted DNA-binding 48.3 6.9 0.00015 38.2 0.4 23 67-89 793-815 (907)
109 KOG4124 Putative transcription 46.7 16 0.00035 32.3 2.4 70 282-353 347-417 (442)
110 COG4957 Predicted transcriptio 46.4 16 0.00034 27.6 1.9 30 21-53 73-102 (148)
111 KOG4167 Predicted DNA-binding 45.8 8.7 0.00019 37.5 0.7 31 21-51 789-819 (907)
112 COG4957 Predicted transcriptio 43.8 11 0.00023 28.5 0.7 25 67-94 77-101 (148)
113 PF05443 ROS_MUCR: ROS/MUCR tr 42.3 14 0.0003 28.2 1.1 31 161-196 70-100 (132)
114 KOG2071 mRNA cleavage and poly 41.5 22 0.00048 34.1 2.6 30 21-50 415-444 (579)
115 PF09986 DUF2225: Uncharacteri 41.3 6.1 0.00013 33.0 -0.9 11 164-176 49-59 (214)
116 PRK09678 DNA-binding transcrip 41.2 11 0.00023 25.3 0.4 44 254-302 2-45 (72)
117 PF13878 zf-C2H2_3: zinc-finge 40.6 27 0.00058 20.4 2.0 24 67-90 14-39 (41)
118 PF08209 Sgf11: Sgf11 (transcr 39.5 29 0.00062 19.3 1.8 23 224-246 5-27 (33)
119 KOG1280 Uncharacterized conser 39.5 40 0.00087 30.0 3.6 34 19-52 74-107 (381)
120 PF10122 Mu-like_Com: Mu-like 39.5 12 0.00026 22.9 0.4 42 316-357 5-47 (51)
121 PF02176 zf-TRAF: TRAF-type zi 39.4 19 0.00042 22.7 1.4 11 233-243 21-31 (60)
122 COG4530 Uncharacterized protei 38.5 23 0.0005 25.6 1.7 31 199-238 11-41 (129)
123 PF14446 Prok-RING_1: Prokaryo 38.3 8.6 0.00019 24.0 -0.4 13 25-37 6-18 (54)
124 PRK00398 rpoP DNA-directed RNA 37.4 9.7 0.00021 22.8 -0.3 13 284-298 3-15 (46)
125 PF04959 ARS2: Arsenite-resist 36.9 17 0.00036 30.3 1.0 28 252-281 76-103 (214)
126 KOG1280 Uncharacterized conser 36.2 35 0.00075 30.4 2.8 33 198-230 80-116 (381)
127 PRK14890 putative Zn-ribbon RN 35.8 22 0.00049 22.6 1.2 10 252-263 47-56 (59)
128 PF08790 zf-LYAR: LYAR-type C2 35.2 8.3 0.00018 20.4 -0.7 20 25-45 1-20 (28)
129 cd00729 rubredoxin_SM Rubredox 35.1 29 0.00064 19.3 1.5 9 284-294 18-26 (34)
130 PHA00626 hypothetical protein 35.1 20 0.00042 22.5 0.8 17 22-38 21-37 (59)
131 PRK00464 nrdR transcriptional 35.1 10 0.00023 29.7 -0.5 13 285-299 29-41 (154)
132 PRK03824 hypA hydrogenase nick 35.0 23 0.0005 27.2 1.4 17 21-37 67-83 (135)
133 TIGR00373 conserved hypothetic 34.4 26 0.00056 27.7 1.6 32 252-297 108-139 (158)
134 PF07754 DUF1610: Domain of un 33.7 18 0.0004 18.4 0.5 11 22-32 14-24 (24)
135 PRK12380 hydrogenase nickel in 33.1 15 0.00032 27.2 0.1 16 22-37 68-83 (113)
136 PRK12496 hypothetical protein; 32.4 23 0.00049 28.2 1.0 30 193-232 123-152 (164)
137 COG1997 RPL43A Ribosomal prote 31.8 43 0.00093 23.2 2.1 8 223-230 35-42 (89)
138 PF04606 Ogr_Delta: Ogr/Delta- 31.5 15 0.00033 22.2 -0.1 14 284-297 25-38 (47)
139 PRK06266 transcription initiat 31.2 25 0.00054 28.4 1.1 32 252-297 116-147 (178)
140 KOG3408 U1-like Zn-finger-cont 31.1 41 0.00088 24.9 2.0 25 64-88 55-79 (129)
141 KOG2807 RNA polymerase II tran 31.0 95 0.0021 27.5 4.5 22 122-145 289-310 (378)
142 KOG3362 Predicted BBOX Zn-fing 31.0 16 0.00034 27.9 -0.1 20 67-86 130-149 (156)
143 PF07295 DUF1451: Protein of u 30.1 18 0.0004 28.1 0.1 21 186-206 101-121 (146)
144 KOG2593 Transcription initiati 29.8 60 0.0013 30.0 3.3 35 65-104 127-161 (436)
145 COG2888 Predicted Zn-ribbon RN 29.4 41 0.00089 21.4 1.6 8 223-230 50-57 (61)
146 KOG0717 Molecular chaperone (D 29.3 29 0.00062 32.3 1.2 22 67-88 293-314 (508)
147 TIGR00100 hypA hydrogenase nic 28.9 20 0.00043 26.6 0.2 16 22-37 68-83 (115)
148 COG1773 Rubredoxin [Energy pro 28.5 25 0.00054 22.1 0.5 15 23-37 2-16 (55)
149 smart00154 ZnF_AN1 AN1-like Zi 28.4 26 0.00057 20.2 0.6 14 24-37 12-25 (39)
150 PF07975 C1_4: TFIIH C1-like d 28.1 25 0.00053 21.8 0.4 25 162-188 20-44 (51)
151 KOG2636 Splicing factor 3a, su 28.0 46 0.00099 30.8 2.3 44 2-45 349-423 (497)
152 COG2331 Uncharacterized protei 27.5 22 0.00049 23.8 0.2 34 23-77 11-44 (82)
153 PF06220 zf-U1: U1 zinc finger 27.5 45 0.00097 19.1 1.4 23 23-45 2-26 (38)
154 PF07800 DUF1644: Protein of u 27.1 71 0.0015 25.1 2.8 31 253-284 107-137 (162)
155 PF03145 Sina: Seven in absent 27.1 65 0.0014 26.5 2.9 48 229-281 24-73 (198)
156 PF01155 HypA: Hydrogenase exp 26.7 16 0.00034 27.1 -0.7 16 23-38 69-84 (113)
157 PF06524 NOA36: NOA36 protein; 25.9 20 0.00043 30.5 -0.3 24 283-308 208-231 (314)
158 PF13240 zinc_ribbon_2: zinc-r 25.0 28 0.0006 17.4 0.2 7 69-75 16-22 (23)
159 KOG3002 Zn finger protein [Gen 24.9 75 0.0016 28.1 3.0 81 66-150 80-164 (299)
160 smart00659 RPOLCX RNA polymera 24.3 68 0.0015 19.1 1.8 11 254-266 3-13 (44)
161 PRK05452 anaerobic nitric oxid 24.2 30 0.00064 33.0 0.4 21 17-37 418-438 (479)
162 PF05290 Baculo_IE-1: Baculovi 23.9 42 0.00091 25.4 1.1 59 280-348 76-135 (140)
163 KOG1842 FYVE finger-containing 22.9 58 0.0013 30.1 1.9 32 21-52 12-43 (505)
164 PF08274 PhnA_Zn_Ribbon: PhnA 22.9 38 0.00083 18.3 0.5 25 68-105 4-28 (30)
165 PF09788 Tmemb_55A: Transmembr 22.6 87 0.0019 26.7 2.8 85 67-178 86-170 (256)
166 COG3677 Transposase and inacti 21.9 47 0.001 25.2 1.0 10 319-328 57-66 (129)
167 PF14353 CpXC: CpXC protein 21.5 25 0.00054 26.6 -0.5 26 283-310 37-62 (128)
168 PRK00420 hypothetical protein; 21.5 50 0.0011 24.3 1.1 12 221-232 38-49 (112)
169 PF01428 zf-AN1: AN1-like Zinc 21.5 33 0.00072 20.2 0.1 15 23-37 12-26 (43)
170 PF10013 DUF2256: Uncharacteri 21.3 60 0.0013 19.1 1.1 18 25-42 9-26 (42)
171 KOG4317 Predicted Zn-finger pr 20.9 25 0.00054 30.7 -0.7 19 67-85 20-38 (383)
172 COG1592 Rubrerythrin [Energy p 20.3 70 0.0015 25.5 1.7 24 253-294 134-157 (166)
173 PF13451 zf-trcl: Probable zin 20.1 43 0.00094 20.5 0.4 23 22-44 2-24 (49)
174 PRK03681 hypA hydrogenase nick 20.1 43 0.00093 24.8 0.5 12 197-208 70-81 (114)
175 cd00730 rubredoxin Rubredoxin; 20.1 48 0.001 20.4 0.6 14 24-37 1-14 (50)
No 1
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.95 E-value=4.3e-28 Score=202.65 Aligned_cols=265 Identities=23% Similarity=0.450 Sum_probs=219.8
Q ss_pred cccccc--ccccccc-hHHHHHHHHhhccccc---------c---ccCC--------CCCcCCCcccccc--ccccccCC
Q 048459 24 RYYCDY--CGICRSK-KSLILSHIASHHKEDE---------E---RVDG--------DGETKGVQCNTCE--ECGASFKK 78 (362)
Q Consensus 24 ~~~C~~--C~~~f~~-~~~l~~H~~~h~~~~~---------~---~~~~--------~~~~~~~~~~~C~--~C~~~f~~ 78 (362)
.+.|.+ |++...+ ...|.+|+-.|--... . ++.. .....-...|.|. .|+..|.+
T Consensus 69 e~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~G~~al~~~~dig~c~~~f~~~~~ip~~g~~f~C~WedCe~~F~s 148 (467)
T KOG3608|consen 69 EHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQGKLALDLHPDIGACTAPFRLMEKIPALGQNFRCGWEDCEREFVS 148 (467)
T ss_pred ceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCcCcccCCcchhhccccchhhhccChhhcCCcccC
Confidence 678876 8888777 5889999876642110 0 0000 0001123335664 69999999
Q ss_pred hhHHHHHHHhccC------------CCC-eecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHH
Q 048459 79 PAYLKQHMLSHLL------------ERP-FRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRH 144 (362)
Q Consensus 79 ~~~l~~H~~~h~~------------~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H 144 (362)
...+..|...|.. ++| +.|.|..|.+.|.+++.|++|++.|.+ +...|+. |+..|+++..|..|
T Consensus 149 ~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~--Cg~~F~~~tkl~DH 226 (467)
T KOG3608|consen 149 IVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH--CGELFRTKTKLFDH 226 (467)
T ss_pred HHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch--HHHHhccccHHHHH
Confidence 9999999887742 223 789999999999999999999999999 8999998 99999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCC--
Q 048459 145 VKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQ-- 222 (362)
Q Consensus 145 ~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~-- 222 (362)
++..... ...+|.|.. |.+.|.+...|..|+..|-. .|+|+.|+.+....++|.+|++..|.
T Consensus 227 ~rRqt~l--------~~n~fqC~~--C~KrFaTeklL~~Hv~rHvn------~ykCplCdmtc~~~ssL~~H~r~rHs~d 290 (467)
T KOG3608|consen 227 LRRQTEL--------NTNSFQCAQ--CFKRFATEKLLKSHVVRHVN------CYKCPLCDMTCSSASSLTTHIRYRHSKD 290 (467)
T ss_pred HHhhhhh--------cCCchHHHH--HHHHHhHHHHHHHHHHHhhh------cccccccccCCCChHHHHHHHHhhhccC
Confidence 9865432 446899999 99999999999999999853 47899999999999999999999884
Q ss_pred -CcCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCc--ccccCCCCCCceecc
Q 048459 223 -YIPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK--PFACSFFGCGMRFAF 298 (362)
Q Consensus 223 -~~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~--~~~C~~~~C~~~f~~ 298 (362)
+|+|+.|.+.+ +.++|..|+.+|+. ..|.|..+.|..+|.+...|.+|++.+|.|.. +|.|-. |++.|++
T Consensus 291 kpfKCd~Cd~~c~~esdL~kH~~~HS~----~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~--Cdr~ft~ 364 (467)
T KOG3608|consen 291 KPFKCDECDTRCVRESDLAKHVQVHSK----TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC--CDRFFTS 364 (467)
T ss_pred CCccccchhhhhccHHHHHHHHHhccc----cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec--chhhhcc
Confidence 89999999876 89999999999984 46999888899999999999999998886654 599999 9999999
Q ss_pred chhhhhhhhccCcc
Q 048459 299 KHVRDNHEKSGHHV 312 (362)
Q Consensus 299 ~~~l~~H~~~~h~~ 312 (362)
-.+|..|+...|+.
T Consensus 365 G~~L~~HL~kkH~f 378 (467)
T KOG3608|consen 365 GKSLSAHLMKKHGF 378 (467)
T ss_pred chhHHHHHHHhhcc
Confidence 99999999877754
No 2
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.95 E-value=5.4e-28 Score=202.06 Aligned_cols=290 Identities=20% Similarity=0.395 Sum_probs=224.4
Q ss_pred ccccc--ccccccchHHHHHHHHhhccccccccCCCCCc-CCCccccc--cccccccCC-hhHHHHHHHhccC-------
Q 048459 25 YYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGET-KGVQCNTC--EECGASFKK-PAYLKQHMLSHLL------- 91 (362)
Q Consensus 25 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~-~~~~~~~C--~~C~~~f~~-~~~l~~H~~~h~~------- 91 (362)
..|.+ |........+|..|+-.|.......+.....- .....+.| ..|++...+ ..+|.+|.-.|--
T Consensus 25 L~c~W~~C~~~C~~~~s~~~h~~dHL~~h~~~~~e~~~~~eh~de~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~ 104 (467)
T KOG3608|consen 25 LTCGWRDCQEICTGEWSLNGHIGDHLEHHAKAQDERGAHAEHTDEHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQ 104 (467)
T ss_pred eecchhhhhhhhcchhhhhhHHHHHHHhhhccccccccccccccceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHH
Confidence 45665 55555666666666554433222111111111 01112555 458887666 5889999766610
Q ss_pred ---------------------------CCCeecccccccccccChhHHHHHHHHcCC--------------CcccCCccC
Q 048459 92 ---------------------------ERPFRCSVDDCHASYRRKDHLTRHLLRHQG--------------KLFKCPIEN 130 (362)
Q Consensus 92 ---------------------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------~~~~C~~~~ 130 (362)
...|.|.|..|+..|.+...|..|+..|.. ..+.|.+..
T Consensus 105 G~~al~~~~dig~c~~~f~~~~~ip~~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~ 184 (467)
T KOG3608|consen 105 GKLALDLHPDIGACTAPFRLMEKIPALGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAM 184 (467)
T ss_pred HHHHHhcCCCcCcccCCcchhhccccchhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchh
Confidence 133899999999999999999999987731 237899899
Q ss_pred CchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCH
Q 048459 131 CNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNK 210 (362)
Q Consensus 131 C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~ 210 (362)
|-+.+.+++.|+.|++ +|. +++...|+. ||..|.++..|..|++..+..... .|.|..|.+.|.++
T Consensus 185 Ct~~~~~k~~LreH~r-~Hs---------~eKvvACp~--Cg~~F~~~tkl~DH~rRqt~l~~n--~fqC~~C~KrFaTe 250 (467)
T KOG3608|consen 185 CTKHMGNKYRLREHIR-THS---------NEKVVACPH--CGELFRTKTKLFDHLRRQTELNTN--SFQCAQCFKRFATE 250 (467)
T ss_pred hhhhhccHHHHHHHHH-hcC---------CCeEEecch--HHHHhccccHHHHHHHhhhhhcCC--chHHHHHHHHHhHH
Confidence 9999999999999999 554 778999999 999999999999999887765433 57889999999999
Q ss_pred HHHHHHHhhhCCCcCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459 211 QCLEAHIRSCHQYIPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF 289 (362)
Q Consensus 211 ~~l~~H~~~~h~~~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~ 289 (362)
..|..|+..|-.-|+|+.|..+. ..++|..|++.-+.. .++|+| +.|.+.|.+.+.|.+|+. +|+ +..|+|..
T Consensus 251 klL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~--dkpfKC--d~Cd~~c~~esdL~kH~~-~HS-~~~y~C~h 324 (467)
T KOG3608|consen 251 KLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSK--DKPFKC--DECDTRCVRESDLAKHVQ-VHS-KTVYQCEH 324 (467)
T ss_pred HHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhcc--CCCccc--cchhhhhccHHHHHHHHH-hcc-ccceecCC
Confidence 99999999988899999999886 799999999987776 489999 779999999999999998 998 77899999
Q ss_pred CCCCceeccchhhhhhhhccCcccc--CCCcccchhhhhccccCCCc
Q 048459 290 FGCGMRFAFKHVRDNHEKSGHHVYS--SGDFVESDERFRSRERGGRK 334 (362)
Q Consensus 290 ~~C~~~f~~~~~l~~H~~~~h~~~~--~~~~~~c~~~f~~~~~~~~~ 334 (362)
++|..+|.+...+.+|++.+|.... ...|-.|++.|.+...+.++
T Consensus 325 ~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~H 371 (467)
T KOG3608|consen 325 PDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAH 371 (467)
T ss_pred CCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHH
Confidence 9999999999999999998873221 12344788888776555444
No 3
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.94 E-value=7.1e-28 Score=221.94 Aligned_cols=203 Identities=28% Similarity=0.461 Sum_probs=143.4
Q ss_pred CCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccC---C
Q 048459 93 RPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQ---E 168 (362)
Q Consensus 93 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~---~ 168 (362)
.|-.|.+ |.++...+++|+-|.++|++ +||+|.+ |++.|.++.+|+.|+- +|....+ -...+.|+ +
T Consensus 604 dPNqCii--C~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~-vHka~p~-----~R~q~ScP~~~i 673 (958)
T KOG1074|consen 604 DPNQCII--CLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMS-VHKAKPP-----ARVQFSCPSTFI 673 (958)
T ss_pred Cccceee--eeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhccc-ccccCcc-----ccccccCCchhh
Confidence 3467866 88888888888888888888 8888888 8888888888888887 5543322 33567888 8
Q ss_pred CCcchhccCHHHHHhHHhhccCcCCc---------ccccccCCcCccCCCHHHHHHHHhhhCC-----------------
Q 048459 169 IGCGKVFKYASKLRQHEDSHVNLDSV---------EAFCSEPGCMKYFTNKQCLEAHIRSCHQ----------------- 222 (362)
Q Consensus 169 ~~C~~~f~~~~~l~~H~~~h~~~~~~---------~~~~~C~~C~~~f~~~~~l~~H~~~~h~----------------- 222 (362)
|-+.|.+...|..|+++|.+.... -..=.|..|.+.|.....+..++..+-.
T Consensus 674 --c~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~ 751 (958)
T KOG1074|consen 674 --CQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEE 751 (958)
T ss_pred --hcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccc
Confidence 888888888888888888732111 1123567788888888777777776521
Q ss_pred -----CcCCCCCCccc-chhHHHHHHHh-----------------------hccCCC-----------------------
Q 048459 223 -----YIPCEICGSMQ-LKKNIKRHVRT-----------------------HEARDL----------------------- 250 (362)
Q Consensus 223 -----~~~C~~C~~~~-~~~~l~~H~~~-----------------------h~~~~~----------------------- 250 (362)
...+..|+..+ ....+..+-.. .+++++
T Consensus 752 ~~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~ 831 (958)
T KOG1074|consen 752 LDVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWN 831 (958)
T ss_pred cccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhc
Confidence 13344454322 11111111000 000000
Q ss_pred ---------------------------------------------CCceeecccCccccccCchhHHHHHHhhcCCCccc
Q 048459 251 ---------------------------------------------SERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPF 285 (362)
Q Consensus 251 ---------------------------------------------~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~ 285 (362)
.....| .+|++.|.+.++|..|++ .|+++|||
T Consensus 832 ~~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C--~vCgk~FsSSsALqiH~r-THtg~KPF 908 (958)
T KOG1074|consen 832 QETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVC--NVCGKQFSSSAALEIHMR-THTGPKPF 908 (958)
T ss_pred ccccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhh--ccchhcccchHHHHHhhh-cCCCCCCc
Confidence 123678 779999999999999999 99999999
Q ss_pred ccCCCCCCceeccchhhhhhhhccCcc
Q 048459 286 ACSFFGCGMRFAFKHVRDNHEKSGHHV 312 (362)
Q Consensus 286 ~C~~~~C~~~f~~~~~l~~H~~~~h~~ 312 (362)
.|.+ |++.|..+.+|+.||.+|+-.
T Consensus 909 ~C~f--C~~aFttrgnLKvHMgtH~w~ 933 (958)
T KOG1074|consen 909 FCHF--CEEAFTTRGNLKVHMGTHMWV 933 (958)
T ss_pred cchh--hhhhhhhhhhhhhhhcccccc
Confidence 9999 999999999999999998743
No 4
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.93 E-value=6.6e-27 Score=190.93 Aligned_cols=140 Identities=33% Similarity=0.614 Sum_probs=128.8
Q ss_pred CCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccc-hhHH
Q 048459 160 DQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQL-KKNI 238 (362)
Q Consensus 160 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~-~~~l 238 (362)
....|+|+. ||+.+.+..+|.+|.++|..... ...+.|+.|++.|.+...|..|+++|.-+..|.+|||.|+ ..-|
T Consensus 127 ~~~r~~c~e--Cgk~ysT~snLsrHkQ~H~~~~s-~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLL 203 (279)
T KOG2462|consen 127 KHPRYKCPE--CGKSYSTSSNLSRHKQTHRSLDS-KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLL 203 (279)
T ss_pred cCCceeccc--cccccccccccchhhcccccccc-cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHh
Confidence 456699999 99999999999999999987666 4568999999999999999999999777999999999996 5559
Q ss_pred HHHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459 239 KRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH 310 (362)
Q Consensus 239 ~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h 310 (362)
+.|+++|+|+ |||.| +.|++.|...++|+.||+ .|.+.|+|+|.. |+|+|...+.|..|..+.-
T Consensus 204 QGHiRTHTGE---KPF~C--~hC~kAFADRSNLRAHmQ-THS~~K~~qC~~--C~KsFsl~SyLnKH~ES~C 267 (279)
T KOG2462|consen 204 QGHIRTHTGE---KPFSC--PHCGKAFADRSNLRAHMQ-THSDVKKHQCPR--CGKSFALKSYLNKHSESAC 267 (279)
T ss_pred hcccccccCC---CCccC--CcccchhcchHHHHHHHH-hhcCCccccCcc--hhhHHHHHHHHHHhhhhcc
Confidence 9999999998 67999 789999999999999998 999999999999 9999999999999998654
No 5
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.92 E-value=6.1e-26 Score=185.32 Aligned_cols=140 Identities=31% Similarity=0.631 Sum_probs=125.8
Q ss_pred CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459 19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS 98 (362)
Q Consensus 19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 98 (362)
......|.|..||+.|.+.+.|.+|.+.|...+. .+.+.|+.|+|+|.+..+|+.|+++|+ -+..|.
T Consensus 125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s-----------~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~ 191 (279)
T KOG2462|consen 125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDS-----------KKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECG 191 (279)
T ss_pred cccCCceeccccccccccccccchhhcccccccc-----------cccccCCCCCceeeehHHHhhHhhccC--CCcccc
Confidence 3456679999999999999999999999987654 455899999999999999999999998 578996
Q ss_pred cccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccC
Q 048459 99 VDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKY 177 (362)
Q Consensus 99 ~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~ 177 (362)
+ ||+.|.....|+-|+++|+| +||.|+. |++.|.++++|+.||++|. +.++|.|.. |++.|..
T Consensus 192 i--CGKaFSRPWLLQGHiRTHTGEKPF~C~h--C~kAFADRSNLRAHmQTHS----------~~K~~qC~~--C~KsFsl 255 (279)
T KOG2462|consen 192 I--CGKAFSRPWLLQGHIRTHTGEKPFSCPH--CGKAFADRSNLRAHMQTHS----------DVKKHQCPR--CGKSFAL 255 (279)
T ss_pred c--ccccccchHHhhcccccccCCCCccCCc--ccchhcchHHHHHHHHhhc----------CCccccCcc--hhhHHHH
Confidence 6 99999999999999999999 9999988 9999999999999999544 678999999 9999999
Q ss_pred HHHHHhHHhh
Q 048459 178 ASKLRQHEDS 187 (362)
Q Consensus 178 ~~~l~~H~~~ 187 (362)
++.|.+|...
T Consensus 256 ~SyLnKH~ES 265 (279)
T KOG2462|consen 256 KSYLNKHSES 265 (279)
T ss_pred HHHHHHhhhh
Confidence 9999999854
No 6
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.90 E-value=3.5e-24 Score=194.55 Aligned_cols=110 Identities=30% Similarity=0.645 Sum_probs=97.1
Q ss_pred CCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCC---------
Q 048459 22 VRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLE--------- 92 (362)
Q Consensus 22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------- 92 (362)
.....|++|.+.|.+...|++|++.-+...+ ..|.|..|..+|.++..|.+||.+|...
T Consensus 208 sqlltcpycdrgykrltslkeHikyrhekne------------~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltq 275 (1007)
T KOG3623|consen 208 SQLLTCPYCDRGYKRLTSLKEHIKYRHEKNE------------PNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQ 275 (1007)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHhhCC------------CCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccc
Confidence 3457899999999999999999998776543 3499999999999999999999988542
Q ss_pred ----CCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHHHH
Q 048459 93 ----RPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHVKE 147 (362)
Q Consensus 93 ----~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~~~ 147 (362)
+.|+| .+|+++|+.+..|..|+++|.| +||.|+. |+++|+....+-.||..
T Consensus 276 sa~lRKFKC--tECgKAFKfKHHLKEHlRIHSGEKPfeCpn--CkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 276 SALLRKFKC--TECGKAFKFKHHLKEHLRIHSGEKPFECPN--CKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred hhhhccccc--cccchhhhhHHHHHhhheeecCCCCcCCcc--cccccccCCcccccccc
Confidence 45999 5699999999999999999999 9999976 99999999999999753
No 7
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.89 E-value=3.4e-24 Score=197.89 Aligned_cols=207 Identities=25% Similarity=0.488 Sum_probs=157.5
Q ss_pred cccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-----CcccCC---ccCCchhccC
Q 048459 66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-----KLFKCP---IENCNREFTI 137 (362)
Q Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~~~C~---~~~C~~~f~~ 137 (362)
+..|-+|.++.+-+++|+.|.++|+|++||+|.+ |+++|.++.+|+.||..|.. ..+.|+ + |-+.|..
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~~kftn 680 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQKKFTN 680 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhh--hcccccc
Confidence 3479999999999999999999999999999987 99999999999999999976 458999 8 9999999
Q ss_pred hhHHHHHHHHhcCCCCCCCC---CCCCCccccCCCCcchhccCHHHHHhHHhhccCc----------------CCccccc
Q 048459 138 QGNMKRHVKELHHEGTTSTD---SGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNL----------------DSVEAFC 198 (362)
Q Consensus 138 ~~~l~~H~~~~h~~~~~~~~---~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~----------------~~~~~~~ 198 (362)
.-.|..|++.|.....+... ......-.|.. |.+.|.....+..++..|.+. ....-..
T Consensus 681 ~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~--~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~ 758 (958)
T KOG1074|consen 681 AVTLPQHIRIHLGGQISNGGTAAEGILAADQCSS--CQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPP 758 (958)
T ss_pred cccccceEEeecCCCCCCCcccccccchhcccch--hhhcccccccchhhhhccCCcccCCcccccccccccccccCCCc
Confidence 99999999844433222211 22223457888 999998888888887776321 0000123
Q ss_pred ccCCcCccCCCHHHHHHHHhhhC--C-------C----------------------------------------------
Q 048459 199 SEPGCMKYFTNKQCLEAHIRSCH--Q-------Y---------------------------------------------- 223 (362)
Q Consensus 199 ~C~~C~~~f~~~~~l~~H~~~~h--~-------~---------------------------------------------- 223 (362)
.+..|+..+.....+..+-...- . .
T Consensus 759 ~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~ 838 (958)
T KOG1074|consen 759 PENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLN 838 (958)
T ss_pred cccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccc
Confidence 44567776655544444322210 0 0
Q ss_pred -----------------------------------------cCCCCCCccc-chhHHHHHHHhhccCCCCCceeecccCc
Q 048459 224 -----------------------------------------IPCEICGSMQ-LKKNIKRHVRTHEARDLSERIKCQFKGC 261 (362)
Q Consensus 224 -----------------------------------------~~C~~C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C 261 (362)
..|.+||+.| +.+.|..|+++|.++ ++|.|.+ |
T Consensus 839 eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~---KPF~C~f--C 913 (958)
T KOG1074|consen 839 EGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGP---KPFFCHF--C 913 (958)
T ss_pred cccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCC---CCccchh--h
Confidence 5699999999 788999999999998 6799955 9
Q ss_pred cccccCchhHHHHHHhhcCCCcc
Q 048459 262 LLSFSTNSNLRQHVKAVHYEIKP 284 (362)
Q Consensus 262 ~~~f~~~~~L~~H~~~~H~~~~~ 284 (362)
++.|..+..|+.||. .|....+
T Consensus 914 ~~aFttrgnLKvHMg-tH~w~q~ 935 (958)
T KOG1074|consen 914 EEAFTTRGNLKVHMG-THMWVQP 935 (958)
T ss_pred hhhhhhhhhhhhhhc-cccccCC
Confidence 999999999999998 7765433
No 8
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.80 E-value=4.2e-20 Score=168.35 Aligned_cols=96 Identities=21% Similarity=0.486 Sum_probs=80.3
Q ss_pred CCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecccc
Q 048459 21 DVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVD 100 (362)
Q Consensus 21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~ 100 (362)
.+..|.|..|.++|..+..|++|+..|....+..+.. ......+.|+|..|+|.|+.+..|+.|+|+|.|++||.| +
T Consensus 237 ne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sl-tqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeC--p 313 (1007)
T KOG3623|consen 237 NEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISL-TQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFEC--P 313 (1007)
T ss_pred CCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccc-cchhhhccccccccchhhhhHHHHHhhheeecCCCCcCC--c
Confidence 3556889999999999999999999998765432111 111345669999999999999999999999999999999 6
Q ss_pred cccccccChhHHHHHHHHc
Q 048459 101 DCHASYRRKDHLTRHLLRH 119 (362)
Q Consensus 101 ~C~~~f~~~~~l~~H~~~h 119 (362)
.|+++|....++..||...
T Consensus 314 nCkKRFSHSGSySSHmSSK 332 (1007)
T KOG3623|consen 314 NCKKRFSHSGSYSSHMSSK 332 (1007)
T ss_pred ccccccccCCccccccccc
Confidence 7999999999999998653
No 9
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.64 E-value=4.1e-17 Score=126.87 Aligned_cols=123 Identities=24% Similarity=0.515 Sum_probs=103.8
Q ss_pred CCCccccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhH
Q 048459 62 KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGN 140 (362)
Q Consensus 62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~ 140 (362)
.+...|.|.+|+|.|.-...|.+||+.|...+.+.|.. ||+.|.....|.+|+++|++ +||+|.. |++.|..+-.
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaftqrcs 188 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFTQRCS 188 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhh--hhHHHHhhcc
Confidence 34556999999999999999999999999999999977 99999999999999999999 9999988 9999999999
Q ss_pred HHHHHHHhcCCCCCCCC-CCCCCccccCCCCcchhccCHHHHHhHHhhccC
Q 048459 141 MKRHVKELHHEGTTSTD-SGDQKQYICQEIGCGKVFKYASKLRQHEDSHVN 190 (362)
Q Consensus 141 l~~H~~~~h~~~~~~~~-~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 190 (362)
|..|++.+|+.....+. ....+.|.|+. ||.+-.....+..|+..|+.
T Consensus 189 leshl~kvhgv~~~yaykerr~kl~vced--cg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 189 LESHLKKVHGVQHQYAYKERRAKLYVCED--CGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred HHHHHHHHcCchHHHHHHHhhhheeeecc--cCCCCCChhHHHHHHHhcCC
Confidence 99999999974222111 12346678888 88888888888888877764
No 10
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.62 E-value=2.2e-16 Score=122.91 Aligned_cols=114 Identities=27% Similarity=0.553 Sum_probs=102.0
Q ss_pred CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCCCCeecc
Q 048459 19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCS 98 (362)
Q Consensus 19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 98 (362)
..+...|.|.+|+|.|.-..-|.+|++-|... +.+.|..||+.|....+|++|+++|+|.+||+|.
T Consensus 112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~v--------------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~ 177 (267)
T KOG3576|consen 112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDV--------------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCS 177 (267)
T ss_pred CCCCCeeeeehhhhhhhHHHHHHHHhhhccHH--------------HHHHHhhccCcccchhhhhhhhccccCccccchh
Confidence 34567899999999999999999999999875 4499999999999999999999999999999997
Q ss_pred cccccccccChhHHHHHHHHcCC------------CcccCCccCCchhccChhHHHHHHHHhcC
Q 048459 99 VDDCHASYRRKDHLTRHLLRHQG------------KLFKCPIENCNREFTIQGNMKRHVKELHH 150 (362)
Q Consensus 99 ~~~C~~~f~~~~~l~~H~~~h~~------------~~~~C~~~~C~~~f~~~~~l~~H~~~~h~ 150 (362)
. |+++|..+-+|..|++.-++ +.|.|. +||..-.....+..|+..+|.
T Consensus 178 ~--c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vce--dcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 178 L--CEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCE--DCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred h--hhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeec--ccCCCCCChhHHHHHHHhcCC
Confidence 7 99999999999999875432 569995 599999999999999997774
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.29 E-value=1e-11 Score=114.88 Aligned_cols=150 Identities=21% Similarity=0.448 Sum_probs=115.4
Q ss_pred CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccC
Q 048459 122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEP 201 (362)
Q Consensus 122 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~ 201 (362)
....|+. |..... ...|..|... - ......|+..+|+..|.. ..+..|+ .|+
T Consensus 406 ~~V~C~N--C~~~i~-l~~l~lHe~~-C----------~r~~V~Cp~~~Cg~v~~r-~el~~H~-------------~C~ 457 (567)
T PLN03086 406 DTVECRN--CKHYIP-SRSIALHEAY-C----------SRHNVVCPHDGCGIVLRV-EEAKNHV-------------HCE 457 (567)
T ss_pred CeEECCC--CCCccc-hhHHHHHHhh-C----------CCcceeCCcccccceeec-cccccCc-------------cCC
Confidence 3457865 888766 4567788752 2 224456875459998843 3445542 789
Q ss_pred CcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHHHHHHHhhccCCCCCceeecccCcccccc----------CchhH
Q 048459 202 GCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFS----------TNSNL 271 (362)
Q Consensus 202 ~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~----------~~~~L 271 (362)
.|++.|. ...|..|+..+|.++.|+ ||+.+.+..|..|+.+|.+. +++.|.+ |++.|. ..+.|
T Consensus 458 ~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~~R~~L~~H~~thCp~---Kpi~C~f--C~~~v~~g~~~~d~~d~~s~L 530 (567)
T PLN03086 458 KCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPL---RLITCRF--CGDMVQAGGSAMDVRDRLRGM 530 (567)
T ss_pred CCCCccc-hHHHHHHHHhcCCCccCC-CCCCcchhHHHhhhhccCCC---CceeCCC--CCCccccCccccchhhhhhhH
Confidence 9999996 678999999999999999 99877788999999999886 6799966 999995 24589
Q ss_pred HHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCc
Q 048459 272 RQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHH 311 (362)
Q Consensus 272 ~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~ 311 (362)
..|.. .. +.+++.|.. ||+.+..+ .|..|+...|.
T Consensus 531 t~HE~-~C-G~rt~~C~~--Cgk~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 531 SEHES-IC-GSRTAPCDS--CGRSVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred HHHHH-hc-CCcceEccc--cCCeeeeh-hHHHHHHHhhc
Confidence 99987 44 899999999 99988655 58899887664
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.95 E-value=2.3e-09 Score=99.52 Aligned_cols=98 Identities=21% Similarity=0.539 Sum_probs=64.8
Q ss_pred ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccC--------
Q 048459 67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTI-------- 137 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~-------- 137 (362)
+.|+.|++.|. ...|..|+..++ .++.| + |++.+ .+..|..|+..|.+ +++.|+. |++.+..
T Consensus 454 ~~C~~Cgk~f~-~s~LekH~~~~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~~~~d~~ 524 (567)
T PLN03086 454 VHCEKCGQAFQ-QGEMEKHMKVFH--EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAGGSAMDVR 524 (567)
T ss_pred ccCCCCCCccc-hHHHHHHHHhcC--CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccCccccchh
Confidence 45777777775 566777777764 66777 4 77544 55777777777766 7777776 7777631
Q ss_pred --hhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhh
Q 048459 138 --QGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDS 187 (362)
Q Consensus 138 --~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 187 (362)
...|..|... . +.+++.|.. ||+.+..+ .|..|+..
T Consensus 525 d~~s~Lt~HE~~-C----------G~rt~~C~~--Cgk~Vrlr-dm~~H~~~ 562 (567)
T PLN03086 525 DRLRGMSEHESI-C----------GSRTAPCDS--CGRSVMLK-EMDIHQIA 562 (567)
T ss_pred hhhhhHHHHHHh-c----------CCcceEccc--cCCeeeeh-hHHHHHHH
Confidence 2356777653 3 456777777 77777777 35556543
No 13
>PHA00733 hypothetical protein
Probab=98.89 E-value=2.1e-09 Score=81.30 Aligned_cols=80 Identities=19% Similarity=0.398 Sum_probs=45.8
Q ss_pred cccccccccccCChhHHHHH--HH---hccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhH
Q 048459 66 CNTCEECGASFKKPAYLKQH--ML---SHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGN 140 (362)
Q Consensus 66 ~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~ 140 (362)
++.|.+|.+.|.+...|..+ +. .+.+..||.|.. |++.|.+...|..|++.+. .+|.|+. |++.|.....
T Consensus 40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h~-~~~~C~~--CgK~F~~~~s 114 (128)
T PHA00733 40 RLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYTE-HSKVCPV--CGKEFRNTDS 114 (128)
T ss_pred hHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcCC-cCccCCC--CCCccCCHHH
Confidence 35666666666555544444 11 123355666633 6666666666666666542 4566655 6666666666
Q ss_pred HHHHHHHhcC
Q 048459 141 MKRHVKELHH 150 (362)
Q Consensus 141 l~~H~~~~h~ 150 (362)
|..|+...|.
T Consensus 115 L~~H~~~~h~ 124 (128)
T PHA00733 115 TLDHVCKKHN 124 (128)
T ss_pred HHHHHHHhcC
Confidence 6666665554
No 14
>PHA00733 hypothetical protein
Probab=98.87 E-value=1.5e-09 Score=82.00 Aligned_cols=54 Identities=26% Similarity=0.550 Sum_probs=48.6
Q ss_pred CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccCcc
Q 048459 252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHV 312 (362)
Q Consensus 252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~ 312 (362)
++|.| +.|++.|.+...|..|++ .| ..+|.|.+ |++.|.....|..|+...|++
T Consensus 72 kPy~C--~~Cgk~Fss~s~L~~H~r-~h--~~~~~C~~--CgK~F~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 72 SPYVC--PLCLMPFSSSVSLKQHIR-YT--EHSKVCPV--CGKEFRNTDSTLDHVCKKHNI 125 (128)
T ss_pred CCccC--CCCCCcCCCHHHHHHHHh-cC--CcCccCCC--CCCccCCHHHHHHHHHHhcCc
Confidence 67999 779999999999999998 55 45799999 999999999999999998876
No 15
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.80 E-value=8.8e-10 Score=95.81 Aligned_cols=170 Identities=17% Similarity=0.302 Sum_probs=105.0
Q ss_pred cccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCc-cCC-chhccChhHHHH
Q 048459 66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPI-ENC-NREFTIQGNMKR 143 (362)
Q Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~-~~C-~~~f~~~~~l~~ 143 (362)
-|.|..|...|.+...|.+|.-.....-.|+| ++|+++|....+|..|.+||..++-.=.. ..= ...-.+....+.
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e 344 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE 344 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence 38999999999999999999754444456999 66999999999999999999753211100 000 000111111111
Q ss_pred HHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCc--------------------------------
Q 048459 144 HVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNL-------------------------------- 191 (362)
Q Consensus 144 H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-------------------------------- 191 (362)
... ..+...+..|.|.+ |++.|.....|+.|+.+|+..
T Consensus 345 ----a~r----sg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~ 414 (500)
T KOG3993|consen 345 ----AER----SGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSAS 414 (500)
T ss_pred ----ccc----cCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccc
Confidence 100 11112334677888 888888887787776666421
Q ss_pred ----------CCcccccccCCcCccCCCHHHHHHHHhhhC--CCcCCCCCCccc-chhHHHHHHHhhcc
Q 048459 192 ----------DSVEAFCSEPGCMKYFTNKQCLEAHIRSCH--QYIPCEICGSMQ-LKKNIKRHVRTHEA 247 (362)
Q Consensus 192 ----------~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h--~~~~C~~C~~~~-~~~~l~~H~~~h~~ 247 (362)
-.....-.++.|+..+.++..-..+.+.-+ ..|.|.+|.-+| +...|.+|+...+.
T Consensus 415 ~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 415 DSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred cccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence 000111245778877776665555553322 368899999776 67788888776553
No 16
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.75 E-value=1.4e-09 Score=94.65 Aligned_cols=177 Identities=20% Similarity=0.276 Sum_probs=105.0
Q ss_pred CCccccccccccccchHHHHHHHH--hhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhccCC-------
Q 048459 22 VRRYYCDYCGICRSKKSLILSHIA--SHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHLLE------- 92 (362)
Q Consensus 22 ~k~~~C~~C~~~f~~~~~l~~H~~--~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------- 92 (362)
...|.|..|...|.+...|.+|.- +.+.+ |.|+.|+|+|+-..+|..|.++|...
T Consensus 265 iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vE----------------YrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~ 328 (500)
T KOG3993|consen 265 IGDYICQLCKEKYEDAFALAQHRCPRIVHVE----------------YRCPECDKVFSCPANLASHRRWHKPRPEAAKAG 328 (500)
T ss_pred HHHHHHHHHHHhhhhHHHHhhccCCeeEEee----------------ecCCcccccccCchhhhhhhcccCCchhhhhcC
Confidence 446999999999999999999964 34444 99999999999999999999999531
Q ss_pred --------------------------CCeecccccccccccChhHHHHHHHHcCCCcccCCc------cCCchhccChhH
Q 048459 93 --------------------------RPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPI------ENCNREFTIQGN 140 (362)
Q Consensus 93 --------------------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~------~~C~~~f~~~~~ 140 (362)
..|.|.. |++.|.++..|+.|+.+|+..+..=.. +.---.+.....
T Consensus 329 ~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~ 406 (500)
T KOG3993|consen 329 SPPPKQAVETRAEVQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA 406 (500)
T ss_pred CCChhhhhhhhhhhhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc
Confidence 1266644 666666666666666666541100000 000000000011
Q ss_pred HHHHHHHhcCCCCCCC-CCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhh
Q 048459 141 MKRHVKELHHEGTTST-DSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRS 219 (362)
Q Consensus 141 l~~H~~~~h~~~~~~~-~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 219 (362)
+-.|....+..+.... .........|+. |+..+.+...--.+.+.-.... .|.|.+|..+|.+...|.+|+..
T Consensus 407 ~a~h~~a~~~~g~~vl~~a~sael~~pp~--~~~ppsss~~sgg~~rlg~~~q----~f~~ky~~atfyss~~ltrhin~ 480 (500)
T KOG3993|consen 407 VATHSSASDSHGDEVLYVAGSAELELPPY--DGSPPSSSGSSGGYGRLGIAEQ----GFTCKYCPATFYSSPGLTRHINK 480 (500)
T ss_pred cccccccccccccceeeeeccccccCCCC--CCCCcccCCCCCccccccchhh----ccccccchHhhhcCcchHhHhhh
Confidence 1111111111000000 011122345677 7776666655455554444422 35778899999999999999988
Q ss_pred hCC
Q 048459 220 CHQ 222 (362)
Q Consensus 220 ~h~ 222 (362)
.|.
T Consensus 481 ~Hp 483 (500)
T KOG3993|consen 481 CHP 483 (500)
T ss_pred cCh
Confidence 774
No 17
>PHA02768 hypothetical protein; Provisional
Probab=98.69 E-value=1.1e-08 Score=63.35 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhh
Q 048459 253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRD 303 (362)
Q Consensus 253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~ 303 (362)
.|.| +.||+.|...+.|..|++ .|+ ++|+|.. |++.|.+.+.|.
T Consensus 5 ~y~C--~~CGK~Fs~~~~L~~H~r-~H~--k~~kc~~--C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYEC--PICGEIYIKRKSMITHLR-KHN--TNLKLSN--CKRISLRTGEYI 48 (55)
T ss_pred ccCc--chhCCeeccHHHHHHHHH-hcC--CcccCCc--ccceecccceeE
Confidence 4888 779999999999999998 787 6899988 999998887775
No 18
>PHA02768 hypothetical protein; Provisional
Probab=98.68 E-value=9.5e-09 Score=63.62 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=36.1
Q ss_pred ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHH
Q 048459 67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLT 113 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~ 113 (362)
|.|+.||+.|.....|..|+++|+ ++|+|. .|++.|...+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLS--NCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCC--cccceecccceeE
Confidence 889999999999999999999988 688894 4999888776653
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.53 E-value=6.2e-08 Score=51.17 Aligned_cols=26 Identities=42% Similarity=1.011 Sum_probs=22.3
Q ss_pred hHHHHHHhhcCCCcccccCCCCCCceecc
Q 048459 270 NLRQHVKAVHYEIKPFACSFFGCGMRFAF 298 (362)
Q Consensus 270 ~L~~H~~~~H~~~~~~~C~~~~C~~~f~~ 298 (362)
+|.+|++ .|++++||+|++ |+++|.+
T Consensus 1 ~l~~H~~-~H~~~k~~~C~~--C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMR-THTGEKPYKCPY--CGKSFSN 26 (26)
T ss_dssp HHHHHHH-HHSSSSSEEESS--SSEEESS
T ss_pred CHHHHhh-hcCCCCCCCCCC--CcCeeCc
Confidence 4788998 899999999999 9998863
No 20
>PHA00732 hypothetical protein
Probab=98.34 E-value=3.4e-07 Score=62.62 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=31.2
Q ss_pred ccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhcc
Q 048459 24 RYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHL 90 (362)
Q Consensus 24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 90 (362)
||.|..|++.|.+.+.|..|++.++.. +.|+.|++.|. .|..|+.+..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~----------------~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL----------------TKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC----------------CccCCCCCEeC---ChhhhhcccC
Confidence 467777777777777777777643322 45777777776 3666765544
No 21
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.28 E-value=6e-07 Score=47.36 Aligned_cols=26 Identities=35% Similarity=0.850 Sum_probs=22.1
Q ss_pred HHHHHHHhccCCCCeecccccccccccC
Q 048459 81 YLKQHMLSHLLERPFRCSVDDCHASYRR 108 (362)
Q Consensus 81 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 108 (362)
+|.+||++|++++||.|+. |++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~--C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPY--CGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESS--SSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCC--CcCeeCc
Confidence 4889999999999999955 9998863
No 22
>PHA00616 hypothetical protein
Probab=98.28 E-value=4.1e-07 Score=53.53 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=30.6
Q ss_pred cccccccccccCChhHHHHHHHhccCCCCeeccc
Q 048459 66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV 99 (362)
Q Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~ 99 (362)
+|+|+.||+.|..++.|.+|++.|++++++.|.+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 4889999999999999999999999999998864
No 23
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.23 E-value=2.2e-06 Score=54.43 Aligned_cols=52 Identities=23% Similarity=0.548 Sum_probs=37.6
Q ss_pred ccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHhcc
Q 048459 24 RYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLSHL 90 (362)
Q Consensus 24 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 90 (362)
.|.|++|++ ..+...|..|....|.... +.+.||+|...+. .+|..|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~------------~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSES------------KNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCC------------CCccCCCchhhhh--hHHHHHHHHhc
Confidence 588888888 4556788888887776533 3478888887654 37888887654
No 24
>PHA00732 hypothetical protein
Probab=98.05 E-value=3.7e-06 Score=57.51 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=35.7
Q ss_pred ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhcc
Q 048459 253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSG 309 (362)
Q Consensus 253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~ 309 (362)
+|.| +.|++.|.+...|..|++..|.+ +.|+. ||++|. .|..|+++.
T Consensus 1 py~C--~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~--CgKsF~---~l~~H~~~~ 47 (79)
T PHA00732 1 MFKC--PICGFTTVTLFALKQHARRNHTL---TKCPV--CNKSYR---RLNQHFYSQ 47 (79)
T ss_pred CccC--CCCCCccCCHHHHHHHhhcccCC---CccCC--CCCEeC---Chhhhhccc
Confidence 4678 67888888888888888744653 57888 888887 577888654
No 25
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.04 E-value=4.4e-06 Score=53.01 Aligned_cols=50 Identities=26% Similarity=0.437 Sum_probs=29.6
Q ss_pred eeecccCccccccCchhHHHHHHhhcCCC-cccccCCCCCCceeccchhhhhhhhccC
Q 048459 254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEI-KPFACSFFGCGMRFAFKHVRDNHEKSGH 310 (362)
Q Consensus 254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~l~~H~~~~h 310 (362)
|.|++ |++ ..+...|..|+...|..+ +.+.|++ |...+. .+|..|+...|
T Consensus 3 f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence 66633 666 344566666666666554 3466766 666543 36666666555
No 26
>PHA00616 hypothetical protein
Probab=97.97 E-value=2.7e-06 Score=50.08 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=27.2
Q ss_pred ceeecccCccccccCchhHHHHHHhhcCCCcccccCC
Q 048459 253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSF 289 (362)
Q Consensus 253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~ 289 (362)
+|+| +.||+.|.+++.|..|++ .|++++++.|+.
T Consensus 1 pYqC--~~CG~~F~~~s~l~~H~r-~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQC--LRCGGIFRKKKEVIEHLL-SVHKQNKLTLEY 34 (44)
T ss_pred CCcc--chhhHHHhhHHHHHHHHH-HhcCCCccceeE
Confidence 4778 778888888888888887 777778888765
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.88 E-value=9.2e-06 Score=41.54 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=21.6
Q ss_pred cccccccccccchHHHHHHHHhh
Q 048459 25 YYCDYCGICRSKKSLILSHIASH 47 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~H~~~h 47 (362)
|.|..|++.|.+++.|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999874
No 28
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.80 E-value=1e-05 Score=41.39 Aligned_cols=22 Identities=41% Similarity=0.754 Sum_probs=13.4
Q ss_pred ccccccccccCChhHHHHHHHh
Q 048459 67 NTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
|.|+.|++.|.+...|.+|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3566666666666666666654
No 29
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.70 E-value=1.6e-05 Score=67.19 Aligned_cols=55 Identities=25% Similarity=0.550 Sum_probs=48.8
Q ss_pred CCceeecccCccccccCchhHHHHHHhhcC------------------CCcccccCCCCCCceeccchhhhhhhh
Q 048459 251 SERIKCQFKGCLLSFSTNSNLRQHVKAVHY------------------EIKPFACSFFGCGMRFAFKHVRDNHEK 307 (362)
Q Consensus 251 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~ 307 (362)
.++|+|+++.|.|.+.+...|+.|+..-|. .+|||.|++ |+|+|+..-.|+.|..
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KRYKNlNGLKYHr~ 419 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYHRK 419 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchhhccCccceeccc
Confidence 378999999999999999999999875551 248999999 9999999999999976
No 30
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.67 E-value=3.4e-05 Score=39.74 Aligned_cols=24 Identities=33% Similarity=0.710 Sum_probs=20.6
Q ss_pred cccccccccccchHHHHHHHHhhc
Q 048459 25 YYCDYCGICRSKKSLILSHIASHH 48 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~H~~~h~ 48 (362)
|.|++|++.|.+...|..|++.++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999999875
No 31
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.61 E-value=0.0001 Score=63.22 Aligned_cols=146 Identities=25% Similarity=0.428 Sum_probs=93.9
Q ss_pred CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccC
Q 048459 122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEP 201 (362)
Q Consensus 122 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~ 201 (362)
..|.|+.+.|......-..|+.|.+..|..-.-..-....+.|.|.+ ..-+...|+.|...--.+..+..-=.|.
T Consensus 150 L~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~-----~lF~~~~Lr~H~~~G~~e~GFKGHP~C~ 224 (493)
T COG5236 150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEI-----RLFRSSTLRDHKNGGLEEEGFKGHPLCI 224 (493)
T ss_pred HHhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccce-----eeeecccccccccCCccccCcCCCchhh
Confidence 34788877788887778888888887774211000011222333333 2334557777765433332232223678
Q ss_pred CcCccCCCHHHHHHHHhhhCCCcCCCCCCcc-------c-chhHHHHHHHhhccCCCCCceeecccCcc----ccccCch
Q 048459 202 GCMKYFTNKQCLEAHIRSCHQYIPCEICGSM-------Q-LKKNIKRHVRTHEARDLSERIKCQFKGCL----LSFSTNS 269 (362)
Q Consensus 202 ~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~-------~-~~~~l~~H~~~h~~~~~~~~~~C~~~~C~----~~f~~~~ 269 (362)
.|...|..-.+|.+|++..|. .|.+|.++ | ...+|..|.+.-+ |.|++..|. ..|....
T Consensus 225 FC~~~FYdDDEL~~HcR~~HE--~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-------y~ct~qtc~~~k~~vf~~~~ 295 (493)
T COG5236 225 FCKIYFYDDDELRRHCRLRHE--ACHICDMVGPIRYQYFKSYEDLEAHFRNAH-------YCCTFQTCRVGKCYVFPYHT 295 (493)
T ss_pred hccceecChHHHHHHHHhhhh--hhhhhhccCccchhhhhCHHHHHHHhhcCc-------eEEEEEEEecCcEEEeccHH
Confidence 899999999999999998775 46666643 4 4667888866433 777776665 4688889
Q ss_pred hHHHHHHhhcCC
Q 048459 270 NLRQHVKAVHYE 281 (362)
Q Consensus 270 ~L~~H~~~~H~~ 281 (362)
.|+.|+...|..
T Consensus 296 el~~h~~~~h~~ 307 (493)
T COG5236 296 ELLEHLTRFHKV 307 (493)
T ss_pred HHHHHHHHHhhc
Confidence 999999877853
No 32
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.56 E-value=4.3e-05 Score=40.74 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=24.0
Q ss_pred ccccccccccccchHHHHHHHHhhcc
Q 048459 24 RYYCDYCGICRSKKSLILSHIASHHK 49 (362)
Q Consensus 24 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 49 (362)
+|.|..|++.|.+...|..|++.|..
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 68999999999999999999988764
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.52 E-value=6.4e-05 Score=54.70 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=0.0
Q ss_pred ccccccccccchHHHHHHHHhhccc
Q 048459 26 YCDYCGICRSKKSLILSHIASHHKE 50 (362)
Q Consensus 26 ~C~~C~~~f~~~~~l~~H~~~h~~~ 50 (362)
+|..|+..|.+...|..|+...|+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~ 25 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGF 25 (100)
T ss_dssp -------------------------
T ss_pred Ccccccccccccccccccccccccc
Confidence 4677777777777777777665553
No 34
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.47 E-value=4.5e-05 Score=64.53 Aligned_cols=63 Identities=32% Similarity=0.660 Sum_probs=46.2
Q ss_pred CcccCCccCCchhccChhHHHHHHHHhcCCC-----CCCC----CCCCCCccccCCCCcchhccCHHHHHhHHh
Q 048459 122 KLFKCPIENCNREFTIQGNMKRHVKELHHEG-----TTST----DSGDQKQYICQEIGCGKVFKYASKLRQHED 186 (362)
Q Consensus 122 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~-----~~~~----~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 186 (362)
+||+|++++|++.|.+..-|+-|+.--|... +.+. ...+.+||.|+. |++.|.+...|+-|..
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCev--C~KRYKNlNGLKYHr~ 419 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKRYKNLNGLKYHRK 419 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccc--cchhhccCccceeccc
Confidence 8899999999999999999999986444221 1110 123568899998 9999988888888753
No 35
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.46 E-value=5e-05 Score=39.09 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=11.1
Q ss_pred cccCCCCCCceeccchhhhhhhhcc
Q 048459 285 FACSFFGCGMRFAFKHVRDNHEKSG 309 (362)
Q Consensus 285 ~~C~~~~C~~~f~~~~~l~~H~~~~ 309 (362)
|+|++ |++.|.+...|..|++++
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHH
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhh
Confidence 34555 555555555555555544
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.35 E-value=9.3e-05 Score=39.41 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=15.7
Q ss_pred ccccCCCCCCceeccchhhhhhhhccC
Q 048459 284 PFACSFFGCGMRFAFKHVRDNHEKSGH 310 (362)
Q Consensus 284 ~~~C~~~~C~~~f~~~~~l~~H~~~~h 310 (362)
||+|.. |++.|.+...|..|++.|+
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhc
Confidence 456666 6666666666666666554
No 37
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.28 E-value=0.00016 Score=52.54 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=14.6
Q ss_pred ccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhHHHHHHHHh
Q 048459 69 CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKEL 148 (362)
Q Consensus 69 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H~~~~ 148 (362)
|..|+..|.+...|..||...++-.. . ....+.....+..+++.-....+.|.+ |++.|.+...|..|++..
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~-~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDI-P-----DQKYLVDPNRLLNYLRKKVKESFRCPY--CNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -----------------------------------------------------SSEEBSS--SS-EESSHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccc-c-----cccccccccccccccccccCCCCCCCc--cCCCCcCHHHHHHHHcCc
Confidence 66666666666666666654332110 0 111122333333333332223466665 666666666666666643
No 38
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.88 E-value=0.00083 Score=40.50 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=19.9
Q ss_pred CCccccccccccccCChhHHHHHHHhccCCCC
Q 048459 63 GVQCNTCEECGASFKKPAYLKQHMLSHLLERP 94 (362)
Q Consensus 63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 94 (362)
..++-+|++|+..+....+|++|+..+++.+|
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 34667888888888888888888877666554
No 39
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.80 E-value=0.0011 Score=56.97 Aligned_cols=135 Identities=22% Similarity=0.392 Sum_probs=90.7
Q ss_pred cccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccc---ccC------ChhHHHHHHHhccCC
Q 048459 24 RYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGA---SFK------KPAYLKQHMLSHLLE 92 (362)
Q Consensus 24 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~---~f~------~~~~l~~H~~~h~~~ 92 (362)
.|.|+. |......-..|..|.+..|+. +.|..|-. .|. ++..|+.|...-..+
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~----------------~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e 214 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF----------------VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEE 214 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc----------------EEhHhhhcCcccCccceeeeecccccccccCCccc
Confidence 588886 777777788899999987776 66777743 333 345566665432222
Q ss_pred CC----eecccccccccccChhHHHHHHHHcCCCcccCCccC--CchhccChhHHHHHHHHhcCCCCCCCCCCCCCcccc
Q 048459 93 RP----FRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIEN--CNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYIC 166 (362)
Q Consensus 93 ~~----~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C 166 (362)
.. =.|.+ |...|.+-.+|..|++..+.+-|.|...+ =..-|.+...|..|.+..| |.|
T Consensus 215 ~GFKGHP~C~F--C~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h--------------y~c 278 (493)
T COG5236 215 EGFKGHPLCIF--CKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAH--------------YCC 278 (493)
T ss_pred cCcCCCchhhh--ccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCc--------------eEE
Confidence 12 26877 99999999999999998776444443211 0113778888999987555 666
Q ss_pred CCCCcc----hhccCHHHHHhHHhhccC
Q 048459 167 QEIGCG----KVFKYASKLRQHEDSHVN 190 (362)
Q Consensus 167 ~~~~C~----~~f~~~~~l~~H~~~h~~ 190 (362)
....|. .+|+....|..|+..-++
T Consensus 279 t~qtc~~~k~~vf~~~~el~~h~~~~h~ 306 (493)
T COG5236 279 TFQTCRVGKCYVFPYHTELLEHLTRFHK 306 (493)
T ss_pred EEEEEecCcEEEeccHHHHHHHHHHHhh
Confidence 654453 378888899999865443
No 40
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.75 E-value=0.0012 Score=34.36 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=21.9
Q ss_pred cccccccccccchHHHHHHHHhhc
Q 048459 25 YYCDYCGICRSKKSLILSHIASHH 48 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~H~~~h~ 48 (362)
|.|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 689999999999999999999664
No 41
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.68 E-value=0.0017 Score=33.75 Aligned_cols=24 Identities=46% Similarity=0.866 Sum_probs=16.7
Q ss_pred ccccccccccCChhHHHHHHHhcc
Q 048459 67 NTCEECGASFKKPAYLKQHMLSHL 90 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~ 90 (362)
|.|+.|++.|.+...|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 457777777777777777776553
No 42
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0033 Score=60.06 Aligned_cols=99 Identities=21% Similarity=0.369 Sum_probs=49.9
Q ss_pred ccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCc---------CccCCCHHHHHHHHhhhC-------CCcCCCC
Q 048459 165 ICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGC---------MKYFTNKQCLEAHIRSCH-------QYIPCEI 228 (362)
Q Consensus 165 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C---------~~~f~~~~~l~~H~~~~h-------~~~~C~~ 228 (362)
.|.. | -.|.+...|+.|+..-|.. +.|..| .....+...|..|+..-- +..-|..
T Consensus 117 ~~~~--c-~~~~s~~~Lk~H~~~~H~~------~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~ 187 (669)
T KOG2231|consen 117 ECLH--C-TEFKSVENLKNHMRDQHKL------HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKF 187 (669)
T ss_pred CCcc--c-cchhHHHHHHHHHHHhhhh------hccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchh
Confidence 4666 6 5666777777777432221 122222 222234555666655411 1134666
Q ss_pred CCccc-chhHHHHHHHhhccCCCCCceeecc----cCccccccCchhHHHHHHhhc
Q 048459 229 CGSMQ-LKKNIKRHVRTHEARDLSERIKCQF----KGCLLSFSTNSNLRQHVKAVH 279 (362)
Q Consensus 229 C~~~~-~~~~l~~H~~~h~~~~~~~~~~C~~----~~C~~~f~~~~~L~~H~~~~H 279 (362)
|...| ....|..|++.++ |.|.+ +.++.-|.....|..|.+..|
T Consensus 188 C~~~fld~~el~rH~~~~h-------~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 188 CHERFLDDDELYRHLRFDH-------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred hhhhhccHHHHHHhhccce-------eheeecCcccccchhcccchHHHHHhhhcC
Confidence 66554 5666666666554 33432 112344566666666666444
No 43
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.60 E-value=0.0013 Score=34.08 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=21.3
Q ss_pred cccccccccccchHHHHHHHHhh
Q 048459 25 YYCDYCGICRSKKSLILSHIASH 47 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~H~~~h 47 (362)
|.|.+|++.|.+...|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 68999999999999999999865
No 44
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.008 Score=57.51 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=12.4
Q ss_pred cCCccCCchhccChhHHHHHHHHhc
Q 048459 125 KCPIENCNREFTIQGNMKRHVKELH 149 (362)
Q Consensus 125 ~C~~~~C~~~f~~~~~l~~H~~~~h 149 (362)
.|.. |...|.....|.+|++..|
T Consensus 184 ~C~~--C~~~fld~~el~rH~~~~h 206 (669)
T KOG2231|consen 184 LCKF--CHERFLDDDELYRHLRFDH 206 (669)
T ss_pred cchh--hhhhhccHHHHHHhhccce
Confidence 4544 5555555555555555433
No 45
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.48 E-value=0.0023 Score=32.80 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=19.8
Q ss_pred cccccccccccchHHHHHHHHhhcc
Q 048459 25 YYCDYCGICRSKKSLILSHIASHHK 49 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~H~~~h~~ 49 (362)
|+|..|+.... +..|.+|++.+++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 78999999998 9999999998764
No 46
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.47 E-value=0.0012 Score=34.27 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=14.9
Q ss_pred ccccccccccCChhHHHHHHHh
Q 048459 67 NTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
|.|.+|++.|.+...|+.|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4567777777777777777654
No 47
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.004 Score=49.59 Aligned_cols=83 Identities=20% Similarity=0.463 Sum_probs=55.9
Q ss_pred CCCCCcccccc--ccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccCChhHHHHHHHh-c------
Q 048459 19 SRDVRRYYCDY--CGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFKKPAYLKQHMLS-H------ 89 (362)
Q Consensus 19 ~~~~k~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h------ 89 (362)
......|.|++ |-..|.....++.|...-|+. .|.+|.+.|.+...|..|+.- |
T Consensus 74 ~~~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~-----------------sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa 136 (253)
T KOG4173|consen 74 KPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN-----------------SCSFCKRAFPTGHLLDAHILEWHDSLFQA 136 (253)
T ss_pred ccccccccccccchHHHHhhhhhHHHhhhhcccc-----------------hhHHHHHhCCchhhhhHHHHHHHHHHHHH
Confidence 34455688887 888888888888888766663 588888888888888888643 3
Q ss_pred ---cCCCCeecccccccccccChhHHHHHHHH
Q 048459 90 ---LLERPFRCSVDDCHASYRRKDHLTRHLLR 118 (362)
Q Consensus 90 ---~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 118 (362)
.|..-|.|-+.+|+..|.+...-..|+-.
T Consensus 137 ~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~ 168 (253)
T KOG4173|consen 137 LVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR 168 (253)
T ss_pred HHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence 22334566555566666555555555543
No 48
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.86 E-value=0.0022 Score=33.96 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=20.6
Q ss_pred ccccccccccccchHHHHHHHHh
Q 048459 24 RYYCDYCGICRSKKSLILSHIAS 46 (362)
Q Consensus 24 ~~~C~~C~~~f~~~~~l~~H~~~ 46 (362)
.|.|..|++.|.+...|..|++.
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCCcccCCCCcCCHHHHHHHHcc
Confidence 48899999999999999999875
No 49
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.83 E-value=0.014 Score=35.35 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=25.9
Q ss_pred CCCCCCCccccccccccccchHHHHHHHHhhccccc
Q 048459 17 PKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDE 52 (362)
Q Consensus 17 ~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 52 (362)
+....+.|-.|++|+..+....+|++|+..+|..++
T Consensus 17 ~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 17 SKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred HhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 355677889999999999999999999998887653
No 50
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.68 E-value=0.0038 Score=31.97 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=7.6
Q ss_pred cCccccccCchhHHHHHH
Q 048459 259 KGCLLSFSTNSNLRQHVK 276 (362)
Q Consensus 259 ~~C~~~f~~~~~L~~H~~ 276 (362)
+.|+.... ...|.+|++
T Consensus 4 ~~C~y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 4 PHCSYSTS-KSNLKRHLK 20 (24)
T ss_dssp SSSS-EES-HHHHHHHHH
T ss_pred CCCCCcCC-HHHHHHHHH
Confidence 33554444 445555544
No 51
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.021 Score=45.65 Aligned_cols=99 Identities=22% Similarity=0.416 Sum_probs=72.2
Q ss_pred CCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHHH
Q 048459 160 DQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIK 239 (362)
Q Consensus 160 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l~ 239 (362)
....|.|++.||-..|.+...+..|-.+-++ -.|..|.+.|.+.--|..|+..-|..| +
T Consensus 76 ~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~-------~sCs~C~r~~Pt~hLLd~HI~E~HDs~-------------F- 134 (253)
T KOG4173|consen 76 RVPAFACQVAGCCQVFDALDDYEHHYHTLHG-------NSCSFCKRAFPTGHLLDAHILEWHDSL-------------F- 134 (253)
T ss_pred ccccccccccchHHHHhhhhhHHHhhhhccc-------chhHHHHHhCCchhhhhHHHHHHHHHH-------------H-
Confidence 4466899999999999999888888765443 267889999999999999987744211 0
Q ss_pred HHHHhhccCCCCCceeecccCccccccCchhHHHHHHhhcCCCc
Q 048459 240 RHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIK 283 (362)
Q Consensus 240 ~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~ 283 (362)
-...-.| +..|.|-..+|+-.|.+...-..|+...|.-..
T Consensus 135 -qa~veRG---~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~Pa 174 (253)
T KOG4173|consen 135 -QALVERG---QDMYQCLVEGCTEKFKTSRDRKDHMIRMHKYPA 174 (253)
T ss_pred -HHHHHcC---ccHHHHHHHhhhhhhhhhhhhhhHHHHhccCCc
Confidence 1111222 256888888899889888888888877775433
No 52
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.31 E-value=0.0028 Score=59.37 Aligned_cols=150 Identities=25% Similarity=0.385 Sum_probs=108.6
Q ss_pred ccccccccccccCChhHHHHHHH--hccCC--CCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChh
Q 048459 65 QCNTCEECGASFKKPAYLKQHML--SHLLE--RPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQG 139 (362)
Q Consensus 65 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~ 139 (362)
.++.|..|...|.....|.+|.+ .|.++ .++.|++..|++.|.....+..|...|.. .++.+....+...+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 46899999999999999999999 89999 99999722499999999999999999998 667777656666655544
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccCCcCccCCCHHHHHHHHhh
Q 048459 140 NMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEPGCMKYFTNKQCLEAHIRS 219 (362)
Q Consensus 140 ~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 219 (362)
.-..+...... ........+.+....|...+.....+..|...+....... +.+..|.+.|.....+..|++.
T Consensus 368 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 440 (467)
T COG5048 368 NNEPPQSLQQY-----KDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYN--CKNPPCSKSFNRHYNLIPHKKI 440 (467)
T ss_pred CCCCccchhhc-----cCccCCccccccccchhhhhccccccccccccccccCCcC--CCCCcchhhccCcccccccccc
Confidence 32211110000 0011334556665567788888888888887777655443 4558888888888888888887
Q ss_pred hC
Q 048459 220 CH 221 (362)
Q Consensus 220 ~h 221 (362)
+.
T Consensus 441 ~~ 442 (467)
T COG5048 441 HT 442 (467)
T ss_pred cc
Confidence 43
No 53
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=95.19 E-value=0.071 Score=46.23 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=18.0
Q ss_pred cccccccccc--chHHHHHHHHhhccc
Q 048459 26 YCDYCGICRS--KKSLILSHIASHHKE 50 (362)
Q Consensus 26 ~C~~C~~~f~--~~~~l~~H~~~h~~~ 50 (362)
.|-.|.+.|. ....+..|+.+-|..
T Consensus 30 ~C~~C~e~f~~peq~~~l~Hl~~ehki 56 (423)
T KOG2482|consen 30 KCLKCDEVFIFPEQKDCLAHLMSEHKI 56 (423)
T ss_pred eeeehhhcccCcchHHHHHHHHhhccE
Confidence 4999988775 444588888776654
No 54
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.04 E-value=0.012 Score=31.16 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=17.9
Q ss_pred cccCCCCCCceeccchhhhhhhhc
Q 048459 285 FACSFFGCGMRFAFKHVRDNHEKS 308 (362)
Q Consensus 285 ~~C~~~~C~~~f~~~~~l~~H~~~ 308 (362)
|-|.+ |++.|.+...|..|+++
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 67888 88888888888888875
No 55
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=94.90 E-value=0.14 Score=44.47 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=86.6
Q ss_pred CCCccccCCCCcchhc-cCHHHHHhHHhhccCcCC---c---------------ccccccCCcCccCCCHHHHHHHHhhh
Q 048459 160 DQKQYICQEIGCGKVF-KYASKLRQHEDSHVNLDS---V---------------EAFCSEPGCMKYFTNKQCLEAHIRSC 220 (362)
Q Consensus 160 ~~~~~~C~~~~C~~~f-~~~~~l~~H~~~h~~~~~---~---------------~~~~~C~~C~~~f~~~~~l~~H~~~~ 220 (362)
......|-. |...+ .+++.+..|+-.-++... . -..+.|-.|.+.|..+..|+.||+..
T Consensus 141 t~fslqClF--Cn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK 218 (423)
T KOG2482|consen 141 TIFSLQCLF--CNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKK 218 (423)
T ss_pred CeeeeEEEE--ecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhc
Confidence 345567888 88765 456677777754433211 0 11246788999999999999999874
Q ss_pred C-CC--cCCCCCCccc-------chhHHHHHH----Hhh--ccC----------CC--CCceeecccCccccccCchhHH
Q 048459 221 H-QY--IPCEICGSMQ-------LKKNIKRHV----RTH--EAR----------DL--SERIKCQFKGCLLSFSTNSNLR 272 (362)
Q Consensus 221 h-~~--~~C~~C~~~~-------~~~~l~~H~----~~h--~~~----------~~--~~~~~C~~~~C~~~f~~~~~L~ 272 (362)
. .. -+-..-.+.| .++....|. .+- .++ .. .....|-+ |.....+...|.
T Consensus 219 ~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLf--C~~~~en~~~l~ 296 (423)
T KOG2482|consen 219 RHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLF--CTNFYENPVFLF 296 (423)
T ss_pred cCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEe--eccchhhHHHHH
Confidence 2 21 0111111111 011111111 111 111 00 12269977 999999999999
Q ss_pred HHHHhhcCCC--------------------------cccccCCCCCCceeccchhhhhhhhc
Q 048459 273 QHVKAVHYEI--------------------------KPFACSFFGCGMRFAFKHVRDNHEKS 308 (362)
Q Consensus 273 ~H~~~~H~~~--------------------------~~~~C~~~~C~~~f~~~~~l~~H~~~ 308 (362)
.||+.+|.-+ ..-.|.. |..+|.....|..||.-
T Consensus 297 eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~--cd~~F~~e~~l~~hm~e 356 (423)
T KOG2482|consen 297 EHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE--CDLSFWKEPGLLIHMVE 356 (423)
T ss_pred HHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc--ccccccCcchhhhhccc
Confidence 9999998310 1134666 99999999999999984
No 56
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.75 E-value=0.03 Score=28.94 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.8
Q ss_pred ccccccccccccchHHHHHHHHh
Q 048459 24 RYYCDYCGICRSKKSLILSHIAS 46 (362)
Q Consensus 24 ~~~C~~C~~~f~~~~~l~~H~~~ 46 (362)
...|+.||+.| ..+.|..|+..
T Consensus 2 l~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 2 LVPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CCcCCCCCCEE-CHHHHHHHHHh
Confidence 36899999999 77899999864
No 57
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=94.69 E-value=0.17 Score=44.88 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=50.8
Q ss_pred cccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHHHHHHHhhccCCCCCceeecccCcc---ccccCchhHHHH
Q 048459 198 CSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCL---LSFSTNSNLRQH 274 (362)
Q Consensus 198 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~---~~f~~~~~L~~H 274 (362)
-.|-.|++.+.+...-..||..+|+.|.-.+ ........|..-+....+ ..|.|-+ |+ +.|.+....+.|
T Consensus 167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdr-eYL~D~~GLl~YLgeKV~----~~~~CL~--CN~~~~~f~sleavr~H 239 (390)
T KOG2785|consen 167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDR-EYLTDEKGLLKYLGEKVG----IGFICLF--CNELGRPFSSLEAVRAH 239 (390)
T ss_pred cceeecCCCcccHHHHHHHHhhccCCcCCch-HhhhchhHHHHHHHHHhc----cCceEEE--eccccCcccccHHHHHH
Confidence 3577899999999999999999898654221 011123344444433333 4589977 99 999999999999
Q ss_pred HHh
Q 048459 275 VKA 277 (362)
Q Consensus 275 ~~~ 277 (362)
|..
T Consensus 240 M~~ 242 (390)
T KOG2785|consen 240 MRD 242 (390)
T ss_pred Hhh
Confidence 974
No 58
>PRK04860 hypothetical protein; Provisional
Probab=94.65 E-value=0.029 Score=44.19 Aligned_cols=40 Identities=28% Similarity=0.564 Sum_probs=33.6
Q ss_pred ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchh
Q 048459 253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHV 301 (362)
Q Consensus 253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~ 301 (362)
+|.| . |+. ....+.+|.+ +|+++++|.|.. |+..|.....
T Consensus 119 ~Y~C--~-C~~---~~~~~rrH~r-i~~g~~~YrC~~--C~~~l~~~~~ 158 (160)
T PRK04860 119 PYRC--K-CQE---HQLTVRRHNR-VVRGEAVYRCRR--CGETLVFKGE 158 (160)
T ss_pred EEEc--C-CCC---eeCHHHHHHH-HhcCCccEECCC--CCceeEEecc
Confidence 4888 6 886 6778899998 999999999999 9999876544
No 59
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.43 E-value=0.042 Score=28.38 Aligned_cols=18 Identities=33% Similarity=0.824 Sum_probs=8.6
Q ss_pred CCCCCCcccchhHHHHHH
Q 048459 225 PCEICGSMQLKKNIKRHV 242 (362)
Q Consensus 225 ~C~~C~~~~~~~~l~~H~ 242 (362)
+|+.||+.|....|..|+
T Consensus 4 ~C~~CgR~F~~~~l~~H~ 21 (25)
T PF13913_consen 4 PCPICGRKFNPDRLEKHE 21 (25)
T ss_pred cCCCCCCEECHHHHHHHH
Confidence 344444444444444444
No 60
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.03 E-value=0.0095 Score=55.81 Aligned_cols=149 Identities=20% Similarity=0.268 Sum_probs=109.4
Q ss_pred CccccccccccccchHHHHHHHH--hhccccccccCCCCCcCCCcccccc--ccccccCChhHHHHHHHhccCCCCeecc
Q 048459 23 RRYYCDYCGICRSKKSLILSHIA--SHHKEDEERVDGDGETKGVQCNTCE--ECGASFKKPAYLKQHMLSHLLERPFRCS 98 (362)
Q Consensus 23 k~~~C~~C~~~f~~~~~l~~H~~--~h~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 98 (362)
.++.|..|...|.....|.+|.+ .|..+. .+++.|+ .|++.|.....+.+|...|.+..++.+.
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGES------------LKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK 355 (467)
T ss_pred cCCCCccccCCcccccccccccccccccccc------------CCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence 57999999999999999999999 566651 1448899 8999999999999999999999988887
Q ss_pred cccccccccChhHHH------HHHHHcCCCcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcc
Q 048459 99 VDDCHASYRRKDHLT------RHLLRHQGKLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCG 172 (362)
Q Consensus 99 ~~~C~~~f~~~~~l~------~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~ 172 (362)
+..+...+.....-. .+........+.+....|...+.....+..|...+-.. ....+.+.. |.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~ 425 (467)
T COG5048 356 LLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSF--------RPYNCKNPP--CS 425 (467)
T ss_pred cccCccccccccCCCCccchhhccCccCCccccccccchhhhhcccccccccccccccc--------CCcCCCCCc--ch
Confidence 766766655443311 11112222566666666777777777777776632211 223455666 99
Q ss_pred hhccCHHHHHhHHhhccCcCC
Q 048459 173 KVFKYASKLRQHEDSHVNLDS 193 (362)
Q Consensus 173 ~~f~~~~~l~~H~~~h~~~~~ 193 (362)
..|.....+..|++.+....+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ 446 (467)
T COG5048 426 KSFNRHYNLIPHKKIHTNHAP 446 (467)
T ss_pred hhccCcccccccccccccCCc
Confidence 999999999999988875443
No 61
>PRK04860 hypothetical protein; Provisional
Probab=93.92 E-value=0.029 Score=44.24 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=27.9
Q ss_pred cccccccccccCChhHHHHHHHhccCCCCeecccccccccccCh
Q 048459 66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRK 109 (362)
Q Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 109 (362)
+|.|. |+. ....+++|.++|+++++|.|.. |+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRR--CGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCC--CCceeEEe
Confidence 47887 876 5566788888888888888844 88776543
No 62
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=93.00 E-value=0.069 Score=30.05 Aligned_cols=24 Identities=17% Similarity=0.630 Sum_probs=21.6
Q ss_pred ccccccccccccchHHHHHHHHhh
Q 048459 24 RYYCDYCGICRSKKSLILSHIASH 47 (362)
Q Consensus 24 ~~~C~~C~~~f~~~~~l~~H~~~h 47 (362)
+|.|.+|++.|.+...+..|++..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChH
Confidence 589999999999999999998753
No 63
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=92.59 E-value=0.04 Score=56.31 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=15.3
Q ss_pred ccccccccccCChhHHHHHHHh
Q 048459 67 NTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
|.|+.|+..|.....|..|||.
T Consensus 466 ~~cpkc~~~yk~a~~L~vhmRs 487 (1406)
T KOG1146|consen 466 LKCPKCNWHYKLAQTLGVHMRS 487 (1406)
T ss_pred ccCCccchhhhhHHHhhhcccc
Confidence 6677777777777777777665
No 64
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=92.34 E-value=0.092 Score=29.53 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=18.0
Q ss_pred ccccccccccCChhHHHHHHHh
Q 048459 67 NTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
|.|..|++.|.+...+..|+..
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred eEccccCCccCCHHHHHHHHCh
Confidence 7788888888888888888753
No 65
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=91.32 E-value=0.22 Score=44.15 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCCCCccccccccccccchHHHHHHHHhhccc
Q 048459 19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKE 50 (362)
Q Consensus 19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~ 50 (362)
.....|=.|-+|++.+.+...-..||..+|+-
T Consensus 161 e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~Hgf 192 (390)
T KOG2785|consen 161 EDELIPTDCLFCDKKSKSLEENLKHMFKEHGF 192 (390)
T ss_pred hcccCCcceeecCCCcccHHHHHHHHhhccCC
Confidence 34455678999999999999999999999885
No 66
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=90.00 E-value=0.11 Score=42.65 Aligned_cols=48 Identities=29% Similarity=0.420 Sum_probs=38.5
Q ss_pred eeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhhhhhhhccC
Q 048459 254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVRDNHEKSGH 310 (362)
Q Consensus 254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h 310 (362)
--|++ |++.|.....|.+|+++.| |+|-+ |.|..-+--.|..|--..|
T Consensus 11 pwcwy--cnrefddekiliqhqkakh-----fkchi--chkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 11 PWCWY--CNREFDDEKILIQHQKAKH-----FKCHI--CHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred ceeee--cccccchhhhhhhhhhhcc-----ceeee--ehhhhccCCCceeehhhhh
Confidence 35866 9999999999999988666 89999 9998888878877744333
No 67
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=88.71 E-value=0.26 Score=30.39 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=28.5
Q ss_pred CCCCCCccccccccccccchHHHHHHHHhhccc
Q 048459 18 KSRDVRRYYCDYCGICRSKKSLILSHIASHHKE 50 (362)
Q Consensus 18 ~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~ 50 (362)
...|+.-+.|+-||..|..+..+.+|+...|+-
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 445778899999999999999999999877763
No 68
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=88.41 E-value=1.5 Score=32.15 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=21.9
Q ss_pred CCCccccccccccccchHHHHHHHHhhcc
Q 048459 21 DVRRYYCDYCGICRSKKSLILSHIASHHK 49 (362)
Q Consensus 21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~ 49 (362)
.-+...|..|+..... +++..|++..|.
T Consensus 8 ~~~vlIC~~C~~av~~-~~v~~HL~~~H~ 35 (109)
T PF12013_consen 8 EYRVLICRQCQYAVQP-SEVESHLRKRHH 35 (109)
T ss_pred cCCEEEeCCCCcccCc-hHHHHHHHHhcc
Confidence 3456789999998877 899999995543
No 69
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=88.26 E-value=0.14 Score=52.53 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=40.7
Q ss_pred ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC-CcccCCccCCchhccChhHHHHHH
Q 048459 67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG-KLFKCPIENCNREFTIQGNMKRHV 145 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~~~C~~~f~~~~~l~~H~ 145 (362)
|.|.+|...|.....|..|.+. |.+.+.....+.-|+..+.. .+| |.+ |...|.....|..|+
T Consensus 1285 ~~~~~~~~~~~~~~~l~~~~~k-------------~~~~~~~~~~~~~~~l~~~d~~~~-c~~--c~~~~~~~~alqihm 1348 (1406)
T KOG1146|consen 1285 YLCRQCKMAFDGEAPLTAHQRK-------------FCFAGRGSGGSMPPPLRVPDCTYH-CLA--CEVLLSGREALQIHM 1348 (1406)
T ss_pred HHHHHHHhhhcchhHHHHHHHH-------------HHhccCccccCCCCcccCcccccc-chH--HHhhcchhHHHHHHH
Confidence 5555555555555555555410 22233333333334444444 445 888 999999999999998
Q ss_pred HHhcCC
Q 048459 146 KELHHE 151 (362)
Q Consensus 146 ~~~h~~ 151 (362)
+..+..
T Consensus 1349 ~~~~~~ 1354 (1406)
T KOG1146|consen 1349 RSSAHR 1354 (1406)
T ss_pred HHhhhc
Confidence 877654
No 70
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=87.20 E-value=0.28 Score=30.28 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=19.6
Q ss_pred CCCccccccccccccCChhHHHHHHHh
Q 048459 62 KGVQCNTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
+|+..+.||-|++.|....++.+|...
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 345557788888888888888888654
No 71
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=86.64 E-value=0.21 Score=41.04 Aligned_cols=41 Identities=29% Similarity=0.605 Sum_probs=18.7
Q ss_pred ccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHH
Q 048459 69 CEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRH 115 (362)
Q Consensus 69 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H 115 (362)
|..|++.|.....|.+|++.. -|+|.+ |.+...+-..|..|
T Consensus 13 cwycnrefddekiliqhqkak----hfkchi--chkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAK----HFKCHI--CHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhhc----cceeee--ehhhhccCCCceee
Confidence 455555555555555554332 245544 54444443444333
No 72
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.54 E-value=0.17 Score=42.25 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=30.9
Q ss_pred CCccccccccccccchHHHHHHHHhhcc-ccccccCCCCCcCCCccccccccccccCCh
Q 048459 22 VRRYYCDYCGICRSKKSLILSHIASHHK-EDEERVDGDGETKGVQCNTCEECGASFKKP 79 (362)
Q Consensus 22 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~ 79 (362)
.|.+.|++|+..|.+..-.....+.-.. .+....-....+---....||.||.+|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4679999999999998655444443211 111111111111111224688888876543
No 73
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=84.71 E-value=2 Score=31.59 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=14.0
Q ss_pred ccCCcCccCCCHHHHHHHHhhhCC
Q 048459 199 SEPGCMKYFTNKQCLEAHIRSCHQ 222 (362)
Q Consensus 199 ~C~~C~~~f~~~~~l~~H~~~~h~ 222 (362)
.|..|+..... +++..|++..|.
T Consensus 13 IC~~C~~av~~-~~v~~HL~~~H~ 35 (109)
T PF12013_consen 13 ICRQCQYAVQP-SEVESHLRKRHH 35 (109)
T ss_pred EeCCCCcccCc-hHHHHHHHHhcc
Confidence 45666666554 667777775443
No 74
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.00 E-value=0.72 Score=38.53 Aligned_cols=46 Identities=22% Similarity=0.583 Sum_probs=30.1
Q ss_pred cCCCCCCcccchhHHHHHHHhhccCCCCCceeecccCccccccCchhHHHHHH
Q 048459 224 IPCEICGSMQLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFSTNSNLRQHVK 276 (362)
Q Consensus 224 ~~C~~C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~ 276 (362)
|.|.+||....+..+..|+-..++. .|.| -.|++.|.. .++..|..
T Consensus 4 FtCnvCgEsvKKp~vekH~srCrn~----~fSC--IDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQVEKHMSRCRNA----YFSC--IDCGKTFER-VSYKNHTK 49 (276)
T ss_pred EehhhhhhhccccchHHHHHhccCC----eeEE--eeccccccc-chhhhhhh
Confidence 4566677666666666676666652 4777 667777776 55667765
No 75
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.40 E-value=0.77 Score=33.55 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=15.1
Q ss_pred ccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCccc
Q 048459 199 SEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQ 233 (362)
Q Consensus 199 ~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~ 233 (362)
.|+.||+.|.... ..|..|+.||..|
T Consensus 11 ~Cp~CG~kFYDLn---------k~PivCP~CG~~~ 36 (108)
T PF09538_consen 11 TCPSCGAKFYDLN---------KDPIVCPKCGTEF 36 (108)
T ss_pred cCCCCcchhccCC---------CCCccCCCCCCcc
Confidence 4566666665443 3455666666554
No 76
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.59 E-value=1.1 Score=37.54 Aligned_cols=50 Identities=28% Similarity=0.462 Sum_probs=39.3
Q ss_pred ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCC
Q 048459 67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQG 121 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 121 (362)
|.|.+||.... +..+.+|+..-++ ..|.| -+|++.|.. .++..|..--+.
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSC--IDC~k~F~~-~sYknH~kCITE 53 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSC--IDCGKTFER-VSYKNHTKCITE 53 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccC-CeeEE--eeccccccc-chhhhhhhhcch
Confidence 88999999876 4668889987766 67999 569999988 778888765443
No 77
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.05 E-value=7.2 Score=28.59 Aligned_cols=24 Identities=33% Similarity=0.707 Sum_probs=11.9
Q ss_pred ccccCCCCcchhccCHHHHHhHHhhc
Q 048459 163 QYICQEIGCGKVFKYASKLRQHEDSH 188 (362)
Q Consensus 163 ~~~C~~~~C~~~f~~~~~l~~H~~~h 188 (362)
.|.|+. |...|-..-....|...|
T Consensus 81 ~y~C~~--C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 81 RYVCAV--CKNVFCVDCDVFVHESLH 104 (112)
T ss_pred ceeCCC--CCCccccccchhhhhhcc
Confidence 455555 555555444444444443
No 78
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=75.57 E-value=1.3 Score=36.73 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=27.5
Q ss_pred CCCCCCCCCccccccccccccchHHHHHHHHhhccccc
Q 048459 15 ERPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDE 52 (362)
Q Consensus 15 ~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 52 (362)
......++..|.|..|+|.|.-..-+..|+..-|.+..
T Consensus 68 ~~~~e~~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 68 KNTKEEDEDKWRCPLCGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp EEE-SSSSEEEEE-SSS-EESSHHHHHHHHHHH-HHHH
T ss_pred HHHHHHcCCEECCCCCCcccCChHHHHHHHhhcCHHHH
Confidence 33344566679999999999999999999998887653
No 79
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=74.53 E-value=2.5 Score=25.17 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=19.0
Q ss_pred CCCCccccccccccccch----HHHHHHHHhh
Q 048459 20 RDVRRYYCDYCGICRSKK----SLILSHIASH 47 (362)
Q Consensus 20 ~~~k~~~C~~C~~~f~~~----~~l~~H~~~h 47 (362)
.+.....|.+|++.+... +.|.+|++..
T Consensus 12 ~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~ 43 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYSSGGTSNLKRHLKKK 43 (45)
T ss_dssp GCSS-EEETTTTEE-----SSTHHHHHHHHHT
T ss_pred CCcCeEEeCCCCeEEeeCCCcHHHHHHhhhhh
Confidence 466778999999999875 8999999543
No 80
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=74.46 E-value=3.2 Score=21.54 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=9.3
Q ss_pred CCCCCCcccchhHHHHHHH
Q 048459 225 PCEICGSMQLKKNIKRHVR 243 (362)
Q Consensus 225 ~C~~C~~~~~~~~l~~H~~ 243 (362)
.||+|++.+....+..|+.
T Consensus 3 ~CPiC~~~v~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREVPENLINSHLD 21 (26)
T ss_pred cCCCCcCcccHHHHHHHHH
Confidence 3555555444444555543
No 81
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=72.51 E-value=1.6 Score=39.29 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=40.1
Q ss_pred ccc--cccccccCChhHHHHHHHhccCC------------CCeecccccccccccChhHHHHHHHHcCCC--------cc
Q 048459 67 NTC--EECGASFKKPAYLKQHMLSHLLE------------RPFRCSVDDCHASYRRKDHLTRHLLRHQGK--------LF 124 (362)
Q Consensus 67 ~~C--~~C~~~f~~~~~l~~H~~~h~~~------------~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--------~~ 124 (362)
|.| +.|+..+-.+.++.+|..+|... ..|.|....|++ +-+....|-.-|+.+ -|
T Consensus 272 yhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrthf 348 (480)
T KOG4377|consen 272 YHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHF 348 (480)
T ss_pred hcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceeccee
Confidence 555 35877777788888888777432 236787777877 333444455555432 26
Q ss_pred cCCccCCchhcc
Q 048459 125 KCPIENCNREFT 136 (362)
Q Consensus 125 ~C~~~~C~~~f~ 136 (362)
.|...+|--.|.
T Consensus 349 hC~r~gCTdtfK 360 (480)
T KOG4377|consen 349 HCQRIGCTDTFK 360 (480)
T ss_pred EEeccCCccccc
Confidence 676634445554
No 82
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=69.02 E-value=3.3 Score=32.76 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=28.1
Q ss_pred CCCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccccc
Q 048459 19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASF 76 (362)
Q Consensus 19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f 76 (362)
..+..-|.|+.|+..|+...++.. . |.||.||...
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~~-------~----------------F~Cp~Cg~~L 138 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAMEL-------N----------------FTCPRCGAML 138 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHHc-------C----------------CcCCCCCCEe
Confidence 345566999999999999988851 1 9999999864
No 83
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=68.62 E-value=4.1 Score=30.96 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCCCCCCCccccccccccccchHHHHHHHHhhccccc
Q 048459 16 RPKSRDVRRYYCDYCGICRSKKSLILSHIASHHKEDE 52 (362)
Q Consensus 16 ~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 52 (362)
.......+...|-+||+.|.. |.+|++.|++-.+
T Consensus 64 i~kSI~~d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 64 IRKSITPDYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp SSTTB-SS-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred HhhccccCeeEEccCCcccch---HHHHHHHccCCCH
Confidence 334445667889999999987 5999999988765
No 84
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=68.35 E-value=0.92 Score=26.43 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.6
Q ss_pred ccCCcCccC
Q 048459 199 SEPGCMKYF 207 (362)
Q Consensus 199 ~C~~C~~~f 207 (362)
.|+.||..|
T Consensus 7 ~C~~Cg~~f 15 (41)
T smart00834 7 RCEDCGHTF 15 (41)
T ss_pred EcCCCCCEE
Confidence 334444433
No 85
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=67.30 E-value=1.1 Score=27.83 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=6.2
Q ss_pred ccccCCcCccCC
Q 048459 197 FCSEPGCMKYFT 208 (362)
Q Consensus 197 ~~~C~~C~~~f~ 208 (362)
.|.|..|+..|.
T Consensus 5 ey~C~~Cg~~fe 16 (52)
T TIGR02605 5 EYRCTACGHRFE 16 (52)
T ss_pred EEEeCCCCCEeE
Confidence 345555555554
No 86
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=66.68 E-value=4.6 Score=22.29 Aligned_cols=10 Identities=40% Similarity=1.341 Sum_probs=5.2
Q ss_pred cccccCCCCCCc
Q 048459 283 KPFACSFFGCGM 294 (362)
Q Consensus 283 ~~~~C~~~~C~~ 294 (362)
.++.|++ ||.
T Consensus 16 ~~~~CP~--Cg~ 25 (33)
T cd00350 16 APWVCPV--CGA 25 (33)
T ss_pred CCCcCcC--CCC
Confidence 4455555 554
No 87
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=66.58 E-value=2.8 Score=32.69 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCcccccccccccc
Q 048459 20 RDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASF 76 (362)
Q Consensus 20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f 76 (362)
.+..-|.|+.|+..|.....+.. .- .. ..|.||.||...
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~-~d-~~----------------~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQL-LD-MD----------------GTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHh-cC-CC----------------CcEECCCCCCEE
Confidence 44567999999999996554322 00 01 119999999865
No 88
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=65.69 E-value=4.4 Score=32.76 Aligned_cols=35 Identities=17% Similarity=0.454 Sum_probs=27.4
Q ss_pred CCCCccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccC
Q 048459 20 RDVRRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFK 77 (362)
Q Consensus 20 ~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~ 77 (362)
.+..-|.|+.|+..|+...++. .. |.||.||....
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~~-------~~----------------F~Cp~Cg~~L~ 147 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAME-------YG----------------FRCPQCGEMLE 147 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHhh-------cC----------------CcCCCCCCCCe
Confidence 3456699999999999988763 11 99999998653
No 89
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=65.49 E-value=0.82 Score=26.99 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=4.4
Q ss_pred cccCCcCccC
Q 048459 198 CSEPGCMKYF 207 (362)
Q Consensus 198 ~~C~~C~~~f 207 (362)
|.|..||..|
T Consensus 6 y~C~~Cg~~f 15 (42)
T PF09723_consen 6 YRCEECGHEF 15 (42)
T ss_pred EEeCCCCCEE
Confidence 3444444444
No 90
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=65.46 E-value=5.1 Score=24.57 Aligned_cols=24 Identities=33% Similarity=0.629 Sum_probs=20.3
Q ss_pred Cccccccccccccch-----HHHHHHHHh
Q 048459 23 RRYYCDYCGICRSKK-----SLILSHIAS 46 (362)
Q Consensus 23 k~~~C~~C~~~f~~~-----~~l~~H~~~ 46 (362)
..-.|..|++.+... +.|.+|++.
T Consensus 17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~~ 45 (50)
T smart00614 17 QRAKCKYCGKKLSRSSKGGTSNLRRHLRR 45 (50)
T ss_pred eEEEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence 457899999999776 699999984
No 91
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=65.34 E-value=3.7 Score=30.64 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=13.5
Q ss_pred ccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCccc
Q 048459 199 SEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQ 233 (362)
Q Consensus 199 ~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~ 233 (362)
.|+.||+.|.... ..+..|+.||..+
T Consensus 11 ~Cp~cg~kFYDLn---------k~p~vcP~cg~~~ 36 (129)
T TIGR02300 11 ICPNTGSKFYDLN---------RRPAVSPYTGEQF 36 (129)
T ss_pred cCCCcCccccccC---------CCCccCCCcCCcc
Confidence 4566666665332 3455555555443
No 92
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=63.46 E-value=7.8 Score=22.03 Aligned_cols=11 Identities=27% Similarity=0.784 Sum_probs=6.3
Q ss_pred ccccCCCCCCcee
Q 048459 284 PFACSFFGCGMRF 296 (362)
Q Consensus 284 ~~~C~~~~C~~~f 296 (362)
...|+. |+..|
T Consensus 25 ~v~C~~--C~~~~ 35 (38)
T TIGR02098 25 KVRCGK--CGHVW 35 (38)
T ss_pred EEECCC--CCCEE
Confidence 355666 66555
No 93
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=63.18 E-value=5.9 Score=30.92 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=17.8
Q ss_pred ccccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcc
Q 048459 197 FCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSM 232 (362)
Q Consensus 197 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~ 232 (362)
.|.|+.|+..|.....+..- .. .+.|.|+.||..
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~-d~-~~~f~Cp~Cg~~ 132 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLL-DM-DGTFTCPRCGEE 132 (147)
T ss_pred EEECcCCCCEeeHHHHHHhc-CC-CCcEECCCCCCE
Confidence 46667777777654433220 01 234667777643
No 94
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=62.79 E-value=1.7 Score=38.19 Aligned_cols=55 Identities=24% Similarity=0.493 Sum_probs=45.0
Q ss_pred CCceeecccCccccccCchhHHHHHHhhcC------------------CCcccccCCCCCCceeccchhhhhhhh
Q 048459 251 SERIKCQFKGCLLSFSTNSNLRQHVKAVHY------------------EIKPFACSFFGCGMRFAFKHVRDNHEK 307 (362)
Q Consensus 251 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~ 307 (362)
.++|+|.++.|.+.+.....|+.|....|. ..|+|.|++ |.++++..-.|.-|..
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i--~~~~~k~~~~l~~~~~ 419 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEV--CSKRYKNLNGLKYHRT 419 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChh--hhhhhccCCCCCceee
Confidence 468999999999999999999999765552 247899999 9999988777766644
No 95
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=62.54 E-value=6.9 Score=27.94 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=31.8
Q ss_pred hhhhcccCCCCCCCCCccccccccccccchHHHHHHHHh
Q 048459 8 EEEKGLEERPKSRDVRRYYCDYCGICRSKKSLILSHIAS 46 (362)
Q Consensus 8 ~~~~~~~~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~ 46 (362)
+..+-+.-++...|-..+-|-.|.+.|.+...|..|.+.
T Consensus 39 Es~~Klp~Dp~lPGlGqhYCieCaryf~t~~aL~~Hkkg 77 (126)
T COG5112 39 ESQKKLPYDPELPGLGQHYCIECARYFITEKALMEHKKG 77 (126)
T ss_pred hhhccCCCCCCCCCCceeeeehhHHHHHHHHHHHHHhcc
Confidence 444445566677788899999999999999999999873
No 96
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=61.66 E-value=3.9 Score=29.91 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=13.3
Q ss_pred cccchhhhhccccCCCcCCCChhhHHHhhc
Q 048459 318 FVESDERFRSRERGGRKRKCPTVEMLIRKR 347 (362)
Q Consensus 318 ~~~c~~~f~~~~~~~~~~~c~~c~~~~~~r 347 (362)
|..||++|.-... .+..||.||..|...
T Consensus 12 Cp~CG~kFYDLnk--~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 12 CPSCGAKFYDLNK--DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCCCcchhccCCC--CCccCCCCCCccCcc
Confidence 3344444444332 444555555555444
No 97
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=61.31 E-value=10 Score=21.47 Aligned_cols=33 Identities=24% Similarity=0.604 Sum_probs=17.3
Q ss_pred eeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCcee
Q 048459 254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRF 296 (362)
Q Consensus 254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f 296 (362)
+.| +.|+..|.-.... +=......+|+. |+..|
T Consensus 3 i~C--p~C~~~y~i~d~~------ip~~g~~v~C~~--C~~~f 35 (36)
T PF13717_consen 3 ITC--PNCQAKYEIDDEK------IPPKGRKVRCSK--CGHVF 35 (36)
T ss_pred EEC--CCCCCEEeCCHHH------CCCCCcEEECCC--CCCEe
Confidence 345 5566666554432 222334466666 66655
No 98
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=58.96 E-value=7 Score=20.31 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=4.5
Q ss_pred cCcccccc
Q 048459 259 KGCLLSFS 266 (362)
Q Consensus 259 ~~C~~~f~ 266 (362)
+.||..|.
T Consensus 18 p~CG~~F~ 25 (26)
T PF10571_consen 18 PHCGYDFE 25 (26)
T ss_pred CCCCCCCc
Confidence 55666653
No 99
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=58.89 E-value=8.7 Score=28.33 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=28.3
Q ss_pred cCCCCCCCCCccccccccccccchHHHHHHHHh
Q 048459 14 EERPKSRDVRRYYCDYCGICRSKKSLILSHIAS 46 (362)
Q Consensus 14 ~~~~~~~~~k~~~C~~C~~~f~~~~~l~~H~~~ 46 (362)
+.++...|-..|-|-.|.+.|.+...|..|.++
T Consensus 47 ~~D~dlPG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 47 EIDPDLPGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred cCCCCCCCCceeehhhhhhhhcchHHHHHHHhc
Confidence 345566788899999999999999999999875
No 100
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.86 E-value=5.2 Score=36.84 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.6
Q ss_pred cccccccccccchHHHHHHHHh
Q 048459 25 YYCDYCGICRSKKSLILSHIAS 46 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~H~~~ 46 (362)
+-|.+|++.|.+...|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 9999999999999999999865
No 101
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=56.58 E-value=7.8 Score=35.06 Aligned_cols=109 Identities=18% Similarity=0.315 Sum_probs=66.2
Q ss_pred CCcCccCCCHHHHHHHHhhhCC--------------CcCC--CCCCcccchhHHHHHHHhhccCCCC----CceeecccC
Q 048459 201 PGCMKYFTNKQCLEAHIRSCHQ--------------YIPC--EICGSMQLKKNIKRHVRTHEARDLS----ERIKCQFKG 260 (362)
Q Consensus 201 ~~C~~~f~~~~~l~~H~~~~h~--------------~~~C--~~C~~~~~~~~l~~H~~~h~~~~~~----~~~~C~~~~ 260 (362)
+.|+..+-.+..+.+|..+|-. .|-| .+|++ +.++...|-..|+..... --|.|.-..
T Consensus 277 e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k--sTsdV~~h~nFht~~~n~GfrrthfhC~r~g 354 (480)
T KOG4377|consen 277 EYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK--STSDVLLHDNFHTDKRNNGFRRTHFHCQRIG 354 (480)
T ss_pred ccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc--ccccccccCccccccccCceecceeEEeccC
Confidence 5677777678888888887532 1334 45666 455566666666432111 126786644
Q ss_pred ccccccCchhHHHHHHhhcCCC------------------------cccccCCCCCCceeccchhhhhhhhccCcc
Q 048459 261 CLLSFSTNSNLRQHVKAVHYEI------------------------KPFACSFFGCGMRFAFKHVRDNHEKSGHHV 312 (362)
Q Consensus 261 C~~~f~~~~~L~~H~~~~H~~~------------------------~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~ 312 (362)
|...|.....-..|++ -+.++ .-|.|...||+.++.+.+.+..|.+.|.+.
T Consensus 355 CTdtfK~~khk~yh~k-dda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~shkrkheRq 429 (480)
T KOG4377|consen 355 CTDTFKDSKHKPYHYK-DDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMASHKRKHERQ 429 (480)
T ss_pred CccccccccccccccC-cchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhhhhhhhhhhh
Confidence 5566663332222322 12111 015677789999999999999999988765
No 102
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.84 E-value=28 Score=25.56 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=42.3
Q ss_pred CccccccccccccchHHHHHHHHhhccccccccCCCCCc-CCCccccccccccccCChhHHHHHHHhccCCCCeeccccc
Q 048459 23 RRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGET-KGVQCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDD 101 (362)
Q Consensus 23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~ 101 (362)
-|-.|++||.+--..-.|.+- .||---.. .-...+. .......|--|...|........ ..-.....|.| +.
T Consensus 14 LP~~CpiCgLtLVss~HLARS--yHHLfPl~-~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C--~~ 86 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARS--YHHLFPLK-AFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVC--AV 86 (112)
T ss_pred CCCcCCcCCCEEeccchHHHh--hhccCCCc-ccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeC--CC
Confidence 356677777776666555543 22221110 0000000 01111247777777765431110 00122345777 34
Q ss_pred ccccccChhHHHHHHHHcC
Q 048459 102 CHASYRRKDHLTRHLLRHQ 120 (362)
Q Consensus 102 C~~~f~~~~~l~~H~~~h~ 120 (362)
|...|-..-.+-.|...|.
T Consensus 87 C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 87 CKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred CCCccccccchhhhhhccC
Confidence 7777766666666666553
No 103
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=51.58 E-value=8.1 Score=32.42 Aligned_cols=131 Identities=19% Similarity=0.330 Sum_probs=61.9
Q ss_pred CcccCCccCCchhccChhHHHHHHHHhcCCCCCCCCCCCCCccccCCCCcchhccCHHHHHhHHhhccCcCCcccccccC
Q 048459 122 KLFKCPIENCNREFTIQGNMKRHVKELHHEGTTSTDSGDQKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEAFCSEP 201 (362)
Q Consensus 122 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~C~ 201 (362)
.-|.|.. |++...+...++.--+..-..-.....+.+...|.|.. |...... . ++.. .++.-.++-|.|.
T Consensus 98 ~CF~Cd~--Cn~~Lad~gf~rnqgr~LC~~Cn~k~Ka~~~g~YvC~K--Ch~~iD~-~----~l~f-r~d~yH~yHFkCt 167 (332)
T KOG2272|consen 98 ACFRCDL--CNKHLADQGFYRNQGRALCRECNQKEKAKGRGRYVCQK--CHAHIDE-Q----PLTF-RGDPYHPYHFKCT 167 (332)
T ss_pred ccchhHH--HHHHHhhhhhHhhcchHHhhhhhhhhcccccceeehhh--hhhhccc-c----cccc-cCCCCCccceecc
Confidence 5577866 88877776665443221111101111112334677777 7644433 1 1111 1111224557888
Q ss_pred CcCccCCCHHHHHHHHh---hhCCCcCCCCCCcc--cchhHHHHHHHhhccCCCCCceeecccCccccccC
Q 048459 202 GCMKYFTNKQCLEAHIR---SCHQYIPCEICGSM--QLKKNIKRHVRTHEARDLSERIKCQFKGCLLSFST 267 (362)
Q Consensus 202 ~C~~~f~~~~~l~~H~~---~~h~~~~C~~C~~~--~~~~~l~~H~~~h~~~~~~~~~~C~~~~C~~~f~~ 267 (362)
.|++.+.+.+.-..-.. ..|..+.+++||.. ........-|..|-.. .-|.| ..|.+.|-.
T Consensus 168 ~C~keL~sdaRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHv---eHFvC--a~CekPFlG 233 (332)
T KOG2272|consen 168 TCGKELTSDAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHV---EHFVC--AKCEKPFLG 233 (332)
T ss_pred cccccccchhhhhccceeccccccccCCcccccccCchHHHHHHHhccccch---hheee--hhcCCcccc
Confidence 88887765442111100 11345667788733 2222222223222222 23888 778888854
No 104
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=51.58 E-value=18 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=14.0
Q ss_pred cCccccccCchhHHHHHHhhcCCCcccccCCCCCCcee
Q 048459 259 KGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRF 296 (362)
Q Consensus 259 ~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f 296 (362)
+.|+..|.-..+- +-.+.+..+|+. |+..|
T Consensus 6 P~C~~~f~v~~~~------l~~~~~~vrC~~--C~~~f 35 (37)
T PF13719_consen 6 PNCQTRFRVPDDK------LPAGGRKVRCPK--CGHVF 35 (37)
T ss_pred CCCCceEEcCHHH------cccCCcEEECCC--CCcEe
Confidence 5566555543321 112233455665 65555
No 105
>PF15269 zf-C2H2_7: Zinc-finger
Probab=50.89 E-value=11 Score=22.23 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.2
Q ss_pred ccccccccccCChhHHHHHHHh
Q 048459 67 NTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
|+|-+|..+...++.|-.||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 7899999999999999999864
No 106
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=50.02 E-value=18 Score=22.92 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=14.4
Q ss_pred CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCC
Q 048459 252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGC 292 (362)
Q Consensus 252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C 292 (362)
.|+.. ..|+-.|...+ +...+ ...+..+|++.||
T Consensus 23 ~PV~s--~~C~H~fek~a-I~~~i----~~~~~~~CPv~GC 56 (57)
T PF11789_consen 23 DPVKS--KKCGHTFEKEA-ILQYI----QRNGSKRCPVAGC 56 (57)
T ss_dssp SEEEE--SSS--EEEHHH-HHHHC----TTTS-EE-SCCC-
T ss_pred CCcCc--CCCCCeecHHH-HHHHH----HhcCCCCCCCCCC
Confidence 34555 55766665443 33332 2345566776555
No 107
>PF12907 zf-met2: Zinc-binding
Probab=48.36 E-value=10 Score=22.10 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=7.0
Q ss_pred hhHHHHHHhhcCCC
Q 048459 269 SNLRQHVKAVHYEI 282 (362)
Q Consensus 269 ~~L~~H~~~~H~~~ 282 (362)
..|..|....|...
T Consensus 18 ~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 18 PQLKEHAENKHPKN 31 (40)
T ss_pred HHHHHHHHccCCCC
Confidence 44555555555443
No 108
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=48.34 E-value=6.9 Score=38.20 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=11.2
Q ss_pred ccccccccccCChhHHHHHHHhc
Q 048459 67 NTCEECGASFKKPAYLKQHMLSH 89 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h 89 (362)
|.|..|++.|.-..++..||++|
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~H 815 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTH 815 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHH
Confidence 44555555444444444444444
No 109
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=46.66 E-value=16 Score=32.34 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=48.4
Q ss_pred CcccccCCCCCCceeccchhhhhhhhccCcc-ccCCCcccchhhhhccccCCCcCCCChhhHHHhhcccCCCC
Q 048459 282 IKPFACSFFGCGMRFAFKHVRDNHEKSGHHV-YSSGDFVESDERFRSRERGGRKRKCPTVEMLIRKRVSLPSP 353 (362)
Q Consensus 282 ~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~-~~~~~~~~c~~~f~~~~~~~~~~~c~~c~~~~~~r~~~~~~ 353 (362)
.++|.|.++.|.+.++....|+.|..+.|.- ..-..-..-.-+| .-...++++|+.|.+.++-.-.|..+
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~--~~~~nk~~r~~i~~~~~k~~~~l~~~ 417 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQG--FVVENKPYRCEVCSKRYKNLNGLKYH 417 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcce--eeeccCcccChhhhhhhccCCCCCce
Confidence 4789999999999999999999998866631 1111111111222 33478899999999888777666654
No 110
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=46.38 E-value=16 Score=27.58 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=24.0
Q ss_pred CCCccccccccccccchHHHHHHHHhhcccccc
Q 048459 21 DVRRYYCDYCGICRSKKSLILSHIASHHKEDEE 53 (362)
Q Consensus 21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~ 53 (362)
...-..|-++|+.|.+ |++|+.+|++-.++
T Consensus 73 tpD~IicLEDGkkfKS---LKRHL~t~~gmTPd 102 (148)
T COG4957 73 TPDYIICLEDGKKFKS---LKRHLTTHYGLTPD 102 (148)
T ss_pred CCCeEEEeccCcchHH---HHHHHhcccCCCHH
Confidence 3445779999999975 89999999987653
No 111
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=45.78 E-value=8.7 Score=37.53 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCCccccccccccccchHHHHHHHHhhcccc
Q 048459 21 DVRRYYCDYCGICRSKKSLILSHIASHHKED 51 (362)
Q Consensus 21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 51 (362)
...-|.|..|++.|....++..||++|....
T Consensus 789 ~~giFpCreC~kvF~KiKSrNAHMK~Hr~q~ 819 (907)
T KOG4167|consen 789 PTGIFPCRECGKVFFKIKSRNAHMKTHRQQE 819 (907)
T ss_pred CCceeehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3557999999999999999999999998754
No 112
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=43.84 E-value=11 Score=28.47 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=19.9
Q ss_pred ccccccccccCChhHHHHHHHhccCCCC
Q 048459 67 NTCEECGASFKKPAYLKQHMLSHLLERP 94 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 94 (362)
..|-.+|+.|.+ |++|+.+|.|-.|
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCCCH
Confidence 578899998875 8899998877544
No 113
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=42.30 E-value=14 Score=28.19 Aligned_cols=31 Identities=39% Similarity=0.635 Sum_probs=18.6
Q ss_pred CCccccCCCCcchhccCHHHHHhHHhhccCcCCccc
Q 048459 161 QKQYICQEIGCGKVFKYASKLRQHEDSHVNLDSVEA 196 (362)
Q Consensus 161 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~~ 196 (362)
.....|-+ ||+.|... .+|++.|+|..+.+|
T Consensus 70 ~d~i~cle--cGk~~k~L---krHL~~~~gltp~eY 100 (132)
T PF05443_consen 70 PDYIICLE--CGKKFKTL---KRHLRTHHGLTPEEY 100 (132)
T ss_dssp SS-EE-TB--T--EESBH---HHHHHHTT-S-HHHH
T ss_pred cCeeEEcc--CCcccchH---HHHHHHccCCCHHHH
Confidence 34578988 99988875 799999988765443
No 114
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=41.48 E-value=22 Score=34.05 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCCccccccccccccchHHHHHHHHhhccc
Q 048459 21 DVRRYYCDYCGICRSKKSLILSHIASHHKE 50 (362)
Q Consensus 21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~ 50 (362)
...+-.|..||..|.+......||..|-..
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H~dw 444 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIHDDW 444 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhhhhh
Confidence 456788999999999999999988877644
No 115
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.27 E-value=6.1 Score=33.02 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=6.2
Q ss_pred cccCCCCcchhcc
Q 048459 164 YICQEIGCGKVFK 176 (362)
Q Consensus 164 ~~C~~~~C~~~f~ 176 (362)
..|+. ||..|.
T Consensus 49 ~vCP~--CgyA~~ 59 (214)
T PF09986_consen 49 WVCPH--CGYAAF 59 (214)
T ss_pred EECCC--CCCccc
Confidence 35666 665544
No 116
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=41.15 E-value=11 Score=25.32 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=24.9
Q ss_pred eeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceeccchhh
Q 048459 254 IKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFAFKHVR 302 (362)
Q Consensus 254 ~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~l 302 (362)
+.| +.||.......+-... .-..+..++|.-..||.+|.....+
T Consensus 2 m~C--P~Cg~~a~irtSr~~s---~~~~~~Y~qC~N~eCg~tF~t~es~ 45 (72)
T PRK09678 2 FHC--PLCQHAAHARTSRYIT---DTTKERYHQCQNVNCSATFITYESV 45 (72)
T ss_pred ccC--CCCCCccEEEEChhcC---hhhheeeeecCCCCCCCEEEEEEEE
Confidence 456 5577665433332222 1144566788744488888876655
No 117
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=40.59 E-value=27 Score=20.40 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=18.2
Q ss_pred ccccccccccCC--hhHHHHHHHhcc
Q 048459 67 NTCEECGASFKK--PAYLKQHMLSHL 90 (362)
Q Consensus 67 ~~C~~C~~~f~~--~~~l~~H~~~h~ 90 (362)
.+|+.|+..|.. ..+-..|.+.|.
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 689999998854 456777877664
No 118
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=39.51 E-value=29 Score=19.26 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=15.4
Q ss_pred cCCCCCCcccchhHHHHHHHhhc
Q 048459 224 IPCEICGSMQLKKNIKRHVRTHE 246 (362)
Q Consensus 224 ~~C~~C~~~~~~~~l~~H~~~h~ 246 (362)
+.|+.|++....+.+..|+..--
T Consensus 5 ~~C~nC~R~v~a~RfA~HLekCm 27 (33)
T PF08209_consen 5 VECPNCGRPVAASRFAPHLEKCM 27 (33)
T ss_dssp EE-TTTSSEEEGGGHHHHHHHHT
T ss_pred EECCCCcCCcchhhhHHHHHHHH
Confidence 56888887777777777776543
No 119
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=39.46 E-value=40 Score=30.01 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=28.0
Q ss_pred CCCCCccccccccccccchHHHHHHHHhhccccc
Q 048459 19 SRDVRRYYCDYCGICRSKKSLILSHIASHHKEDE 52 (362)
Q Consensus 19 ~~~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 52 (362)
+.....|.|++|++.=.+...|..|+...|.+-.
T Consensus 74 ~y~~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~ 107 (381)
T KOG1280|consen 74 HYDPQSFTCPYCGIMGFTERQFGTHVLSQHPEAS 107 (381)
T ss_pred ccccccccCCcccccccchhHHHHHhhhcCcccC
Confidence 3445589999999999999999999998777643
No 120
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=39.46 E-value=12 Score=22.95 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=27.8
Q ss_pred CCcccchhhhhcc-ccCCCcCCCChhhHHHhhcccCCCCCCcC
Q 048459 316 GDFVESDERFRSR-ERGGRKRKCPTVEMLIRKRVSLPSPTQSC 357 (362)
Q Consensus 316 ~~~~~c~~~f~~~-~~~~~~~~c~~c~~~~~~r~~~~~~~~~~ 357 (362)
.+|+.|++-.... ....--.+||-|+.+..-+...+...|..
T Consensus 5 iRC~~CnklLa~~g~~~~leIKCpRC~tiN~~~a~~~~~~p~~ 47 (51)
T PF10122_consen 5 IRCGHCNKLLAKAGEVIELEIKCPRCKTINHVRATSPEPEPLS 47 (51)
T ss_pred eeccchhHHHhhhcCccEEEEECCCCCccceEeccCCCCCchh
Confidence 3466777776664 33445678999988877777666655543
No 121
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=39.36 E-value=19 Score=22.75 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=4.5
Q ss_pred cchhHHHHHHH
Q 048459 233 QLKKNIKRHVR 243 (362)
Q Consensus 233 ~~~~~l~~H~~ 243 (362)
+.+..|..|+.
T Consensus 21 i~r~~l~~H~~ 31 (60)
T PF02176_consen 21 IPRKELDDHLE 31 (60)
T ss_dssp EECCCHHHHHH
T ss_pred eeHHHHHHHHH
Confidence 33444444444
No 122
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.54 E-value=23 Score=25.60 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=15.3
Q ss_pred ccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcccchhHH
Q 048459 199 SEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSMQLKKNI 238 (362)
Q Consensus 199 ~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~~~~~~l 238 (362)
.|+.|++.|.... ..|..|+.||++|-.+.|
T Consensus 11 idPetg~KFYDLN---------rdPiVsPytG~s~P~s~f 41 (129)
T COG4530 11 IDPETGKKFYDLN---------RDPIVSPYTGKSYPRSYF 41 (129)
T ss_pred cCccccchhhccC---------CCccccCcccccchHHHH
Confidence 3455666554322 345556666655533333
No 123
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=38.30 E-value=8.6 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=9.9
Q ss_pred cccccccccccch
Q 048459 25 YYCDYCGICRSKK 37 (362)
Q Consensus 25 ~~C~~C~~~f~~~ 37 (362)
-.|..||+.|...
T Consensus 6 ~~C~~Cg~~~~~~ 18 (54)
T PF14446_consen 6 CKCPVCGKKFKDG 18 (54)
T ss_pred ccChhhCCcccCC
Confidence 5688899888654
No 124
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=37.44 E-value=9.7 Score=22.84 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=7.1
Q ss_pred ccccCCCCCCceecc
Q 048459 284 PFACSFFGCGMRFAF 298 (362)
Q Consensus 284 ~~~C~~~~C~~~f~~ 298 (362)
.|.|+. ||..|..
T Consensus 3 ~y~C~~--CG~~~~~ 15 (46)
T PRK00398 3 EYKCAR--CGREVEL 15 (46)
T ss_pred EEECCC--CCCEEEE
Confidence 356665 6665543
No 125
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=36.87 E-value=17 Score=30.32 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=19.1
Q ss_pred CceeecccCccccccCchhHHHHHHhhcCC
Q 048459 252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYE 281 (362)
Q Consensus 252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~ 281 (362)
..|.| +.|+|.|.-..-..+|+...|..
T Consensus 76 ~K~~C--~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 76 DKWRC--PLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp EEEEE---SSS-EESSHHHHHHHHHHH-HH
T ss_pred CEECC--CCCCcccCChHHHHHHHhhcCHH
Confidence 45778 66888888888888888877753
No 126
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=36.20 E-value=35 Score=30.39 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=18.1
Q ss_pred cccCCcCccCCCHHHHHHHHhhhCC----CcCCCCCC
Q 048459 198 CSEPGCMKYFTNKQCLEAHIRSCHQ----YIPCEICG 230 (362)
Q Consensus 198 ~~C~~C~~~f~~~~~l~~H~~~~h~----~~~C~~C~ 230 (362)
|.|+.|+.+=.+...|..|+...|. ...|++|+
T Consensus 80 ftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 80 FTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred ccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence 5556666655555566666555553 23355554
No 127
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=35.76 E-value=22 Score=22.61 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=6.0
Q ss_pred CceeecccCccc
Q 048459 252 ERIKCQFKGCLL 263 (362)
Q Consensus 252 ~~~~C~~~~C~~ 263 (362)
.+|.| +.||+
T Consensus 47 ~~Y~C--P~CGF 56 (59)
T PRK14890 47 NPYTC--PKCGF 56 (59)
T ss_pred CceEC--CCCCC
Confidence 35666 66664
No 128
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=35.16 E-value=8.3 Score=20.42 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=12.9
Q ss_pred cccccccccccchHHHHHHHH
Q 048459 25 YYCDYCGICRSKKSLILSHIA 45 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~H~~ 45 (362)
|.|-.|++.| .....+.|..
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht~ 20 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHTS 20 (28)
T ss_dssp EEETTTTEEE-EGGGTTT---
T ss_pred CeeecCCCCc-CcCCcCCCCc
Confidence 5789999999 4456666654
No 129
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.14 E-value=29 Score=19.26 Aligned_cols=9 Identities=44% Similarity=1.243 Sum_probs=4.9
Q ss_pred ccccCCCCCCc
Q 048459 284 PFACSFFGCGM 294 (362)
Q Consensus 284 ~~~C~~~~C~~ 294 (362)
|..|++ ||.
T Consensus 18 p~~CP~--Cg~ 26 (34)
T cd00729 18 PEKCPI--CGA 26 (34)
T ss_pred CCcCcC--CCC
Confidence 445666 554
No 130
>PHA00626 hypothetical protein
Probab=35.14 E-value=20 Score=22.49 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.2
Q ss_pred CCccccccccccccchH
Q 048459 22 VRRYYCDYCGICRSKKS 38 (362)
Q Consensus 22 ~k~~~C~~C~~~f~~~~ 38 (362)
...|.|..||..|+...
T Consensus 21 snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 21 SDDYVCCDCGYNDSKDA 37 (59)
T ss_pred CcceEcCCCCCeechhh
Confidence 67899999999998643
No 131
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=35.09 E-value=10 Score=29.71 Aligned_cols=13 Identities=38% Similarity=0.702 Sum_probs=5.8
Q ss_pred cccCCCCCCceeccc
Q 048459 285 FACSFFGCGMRFAFK 299 (362)
Q Consensus 285 ~~C~~~~C~~~f~~~ 299 (362)
++|+. ||++|.+.
T Consensus 29 ~~c~~--c~~~f~~~ 41 (154)
T PRK00464 29 RECLA--CGKRFTTF 41 (154)
T ss_pred eeccc--cCCcceEe
Confidence 44444 44444443
No 132
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.98 E-value=23 Score=27.16 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=13.7
Q ss_pred CCCccccccccccccch
Q 048459 21 DVRRYYCDYCGICRSKK 37 (362)
Q Consensus 21 ~~k~~~C~~C~~~f~~~ 37 (362)
....+.|..||..|...
T Consensus 67 ~p~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 67 EEAVLKCRNCGNEWSLK 83 (135)
T ss_pred cceEEECCCCCCEEecc
Confidence 34679999999988764
No 133
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=34.44 E-value=26 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=23.6
Q ss_pred CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceec
Q 048459 252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFA 297 (362)
Q Consensus 252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~ 297 (362)
.-|.| +.|+..|+...++. ..|.|+. ||....
T Consensus 108 ~~Y~C--p~c~~r~tf~eA~~----------~~F~Cp~--Cg~~L~ 139 (158)
T TIGR00373 108 MFFIC--PNMCVRFTFNEAME----------LNFTCPR--CGAMLD 139 (158)
T ss_pred CeEEC--CCCCcEeeHHHHHH----------cCCcCCC--CCCEee
Confidence 45888 77888888777764 2588988 887644
No 134
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=33.72 E-value=18 Score=18.37 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.9
Q ss_pred CCccccccccc
Q 048459 22 VRRYYCDYCGI 32 (362)
Q Consensus 22 ~k~~~C~~C~~ 32 (362)
.-.|.|+.||+
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 45699999985
No 135
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.09 E-value=15 Score=27.21 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=12.5
Q ss_pred CCccccccccccccch
Q 048459 22 VRRYYCDYCGICRSKK 37 (362)
Q Consensus 22 ~k~~~C~~C~~~f~~~ 37 (362)
.-.+.|..||..|...
T Consensus 68 p~~~~C~~Cg~~~~~~ 83 (113)
T PRK12380 68 PAQAWCWDCSQVVEIH 83 (113)
T ss_pred CcEEEcccCCCEEecC
Confidence 3458999999888764
No 136
>PRK12496 hypothetical protein; Provisional
Probab=32.36 E-value=23 Score=28.23 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=19.0
Q ss_pred CcccccccCCcCccCCCHHHHHHHHhhhCCCcCCCCCCcc
Q 048459 193 SVEAFCSEPGCMKYFTNKQCLEAHIRSCHQYIPCEICGSM 232 (362)
Q Consensus 193 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~C~~C~~~ 232 (362)
...|.+.|..|++.|.... ..-.|++||..
T Consensus 123 ~~~w~~~C~gC~~~~~~~~----------~~~~C~~CG~~ 152 (164)
T PRK12496 123 VIKWRKVCKGCKKKYPEDY----------PDDVCEICGSP 152 (164)
T ss_pred heeeeEECCCCCccccCCC----------CCCcCCCCCCh
Confidence 3456678899998885321 12348888843
No 137
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=31.78 E-value=43 Score=23.25 Aligned_cols=8 Identities=38% Similarity=0.999 Sum_probs=3.4
Q ss_pred CcCCCCCC
Q 048459 223 YIPCEICG 230 (362)
Q Consensus 223 ~~~C~~C~ 230 (362)
.+.|+.|+
T Consensus 35 ~~~Cp~C~ 42 (89)
T COG1997 35 KHVCPFCG 42 (89)
T ss_pred CCcCCCCC
Confidence 34444444
No 138
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=31.53 E-value=15 Score=22.16 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=6.6
Q ss_pred ccccCCCCCCceec
Q 048459 284 PFACSFFGCGMRFA 297 (362)
Q Consensus 284 ~~~C~~~~C~~~f~ 297 (362)
-|+|....||.+|.
T Consensus 25 Y~qC~N~~Cg~tfv 38 (47)
T PF04606_consen 25 YCQCTNPECGHTFV 38 (47)
T ss_pred EEEECCCcCCCEEE
Confidence 34454444555544
No 139
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=31.24 E-value=25 Score=28.45 Aligned_cols=32 Identities=22% Similarity=0.584 Sum_probs=22.7
Q ss_pred CceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCceec
Q 048459 252 ERIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGMRFA 297 (362)
Q Consensus 252 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~ 297 (362)
.-|.| +.|+..|+....+. ..|.|+. ||....
T Consensus 116 ~~Y~C--p~C~~rytf~eA~~----------~~F~Cp~--Cg~~L~ 147 (178)
T PRK06266 116 MFFFC--PNCHIRFTFDEAME----------YGFRCPQ--CGEMLE 147 (178)
T ss_pred CEEEC--CCCCcEEeHHHHhh----------cCCcCCC--CCCCCe
Confidence 45888 77888887776653 2588888 887644
No 140
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=31.09 E-value=41 Score=24.95 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=16.5
Q ss_pred CccccccccccccCChhHHHHHHHh
Q 048459 64 VQCNTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 64 ~~~~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
.-.|.|-.|.+-|.+...|..|.++
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhc
Confidence 3346677777777777777777553
No 141
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.00 E-value=95 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=15.7
Q ss_pred CcccCCccCCchhccChhHHHHHH
Q 048459 122 KLFKCPIENCNREFTIQGNMKRHV 145 (362)
Q Consensus 122 ~~~~C~~~~C~~~f~~~~~l~~H~ 145 (362)
.|..|++ |+....+...|.+-.
T Consensus 289 LP~eCpi--C~ltLVss~hLARSy 310 (378)
T KOG2807|consen 289 LPIECPI--CSLTLVSSPHLARSY 310 (378)
T ss_pred CCccCCc--cceeEecchHHHHHH
Confidence 4667877 888877777776554
No 142
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=30.97 E-value=16 Score=27.92 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=12.1
Q ss_pred ccccccccccCChhHHHHHH
Q 048459 67 NTCEECGASFKKPAYLKQHM 86 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~ 86 (362)
|.|..||..+-+..-+..|.
T Consensus 130 ysC~~CG~kyCsv~C~~~Hn 149 (156)
T KOG3362|consen 130 YSCVNCGTKYCSVRCLKTHN 149 (156)
T ss_pred hHHHhcCCceeechhhhhcc
Confidence 55666666666666665554
No 143
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=30.12 E-value=18 Score=28.10 Aligned_cols=21 Identities=10% Similarity=-0.176 Sum_probs=13.1
Q ss_pred hhccCcCCcccccccCCcCcc
Q 048459 186 DSHVNLDSVEAFCSEPGCMKY 206 (362)
Q Consensus 186 ~~h~~~~~~~~~~~C~~C~~~ 206 (362)
..+.|+.+....+.|..||..
T Consensus 101 ~Y~sGE~~g~G~l~C~~Cg~~ 121 (146)
T PF07295_consen 101 VYHSGEVVGPGTLVCENCGHE 121 (146)
T ss_pred CeecCcEecCceEecccCCCE
Confidence 345566666666677777764
No 144
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=29.82 E-value=60 Score=29.99 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=24.5
Q ss_pred ccccccccccccCChhHHHHHHHhccCCCCeecccccccc
Q 048459 65 QCNTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHA 104 (362)
Q Consensus 65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~ 104 (362)
.-|.|+.|.+.|+....++. .-.....|.|.. |+-
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~~L---~~~~~~~F~C~~--C~g 161 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEALQL---LDNETGEFHCEN--CGG 161 (436)
T ss_pred ccccCCccccchhhhHHHHh---hcccCceEEEec--CCC
Confidence 44999999999987665542 233345699976 874
No 145
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.44 E-value=41 Score=21.43 Aligned_cols=8 Identities=38% Similarity=0.928 Sum_probs=3.6
Q ss_pred CcCCCCCC
Q 048459 223 YIPCEICG 230 (362)
Q Consensus 223 ~~~C~~C~ 230 (362)
+|.|+.||
T Consensus 50 ~Y~Cp~CG 57 (61)
T COG2888 50 PYRCPKCG 57 (61)
T ss_pred ceECCCcC
Confidence 44444444
No 146
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.32 E-value=29 Score=32.28 Aligned_cols=22 Identities=41% Similarity=0.535 Sum_probs=19.9
Q ss_pred ccccccccccCChhHHHHHHHh
Q 048459 67 NTCEECGASFKKPAYLKQHMLS 88 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~ 88 (362)
+.|.+|+++|.+..+|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 6799999999999999999754
No 147
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=28.92 E-value=20 Score=26.60 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=12.6
Q ss_pred CCccccccccccccch
Q 048459 22 VRRYYCDYCGICRSKK 37 (362)
Q Consensus 22 ~k~~~C~~C~~~f~~~ 37 (362)
.-.+.|..|+..|...
T Consensus 68 p~~~~C~~Cg~~~~~~ 83 (115)
T TIGR00100 68 PVECECEDCSEEVSPE 83 (115)
T ss_pred CcEEEcccCCCEEecC
Confidence 3458999999988775
No 148
>COG1773 Rubredoxin [Energy production and conversion]
Probab=28.48 E-value=25 Score=22.10 Aligned_cols=15 Identities=27% Similarity=0.828 Sum_probs=12.3
Q ss_pred Cccccccccccccch
Q 048459 23 RRYYCDYCGICRSKK 37 (362)
Q Consensus 23 k~~~C~~C~~~f~~~ 37 (362)
+.|+|..||..|.-.
T Consensus 2 ~~~~C~~CG~vYd~e 16 (55)
T COG1773 2 KRWRCSVCGYVYDPE 16 (55)
T ss_pred CceEecCCceEeccc
Confidence 468999999998764
No 149
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=28.36 E-value=26 Score=20.18 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=12.3
Q ss_pred ccccccccccccch
Q 048459 24 RYYCDYCGICRSKK 37 (362)
Q Consensus 24 ~~~C~~C~~~f~~~ 37 (362)
+|.|..|+..|-..
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 79999999999765
No 150
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=28.08 E-value=25 Score=21.78 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=13.8
Q ss_pred CccccCCCCcchhccCHHHHHhHHhhc
Q 048459 162 KQYICQEIGCGKVFKYASKLRQHEDSH 188 (362)
Q Consensus 162 ~~~~C~~~~C~~~f~~~~~l~~H~~~h 188 (362)
..|.|+. |...|=.--.+..|...|
T Consensus 20 ~~y~C~~--C~~~FC~dCD~fiHE~LH 44 (51)
T PF07975_consen 20 SRYRCPK--CKNHFCIDCDVFIHETLH 44 (51)
T ss_dssp EEE--TT--TT--B-HHHHHTTTTTS-
T ss_pred CeEECCC--CCCccccCcChhhhcccc
Confidence 5688888 888887777777776655
No 151
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=28.05 E-value=46 Score=30.79 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=0.0
Q ss_pred hhhchhhhhhcccCCCCCCCCC------------------------------cccccccc-ccccchHHHHHHHH
Q 048459 2 EEVSDMEEEKGLEERPKSRDVR------------------------------RYYCDYCG-ICRSKKSLILSHIA 45 (362)
Q Consensus 2 e~~~~~~~~~~~~~~~~~~~~k------------------------------~~~C~~C~-~~f~~~~~l~~H~~ 45 (362)
+|++..+.++...+.....++. .|.|.+|| ++|..+.++.+|..
T Consensus 349 ~e~E~E~~eq~~~~~e~~~de~~~~ynp~~lPLGwDGkPiPyWLyKLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 349 EEREEEEEEQSDSDEESDDDEEELIYNPKNLPLGWDGKPIPYWLYKLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred hhhhhhhhhhhccccccccchhhccCCcccCCCCCCCCcCchHHHhhcCCCcccceeeccCccccCcHHHHHHhH
No 152
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.50 E-value=22 Score=23.79 Aligned_cols=34 Identities=35% Similarity=0.731 Sum_probs=21.8
Q ss_pred CccccccccccccchHHHHHHHHhhccccccccCCCCCcCCCccccccccccccC
Q 048459 23 RRYYCDYCGICRSKKSLILSHIASHHKEDEERVDGDGETKGVQCNTCEECGASFK 77 (362)
Q Consensus 23 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~ 77 (362)
-.|+|..|+..|. +.+|+..... -.|+.|+..+.
T Consensus 11 Y~Y~c~~cg~~~d----vvq~~~ddpl-----------------t~ce~c~a~~k 44 (82)
T COG2331 11 YSYECTECGNRFD----VVQAMTDDPL-----------------TTCEECGARLK 44 (82)
T ss_pred eEEeecccchHHH----HHHhcccCcc-----------------ccChhhChHHH
Confidence 3589999998764 4444432211 57999987543
No 153
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=27.46 E-value=45 Score=19.12 Aligned_cols=23 Identities=39% Similarity=0.790 Sum_probs=9.8
Q ss_pred Ccccccccccccc-ch-HHHHHHHH
Q 048459 23 RRYYCDYCGICRS-KK-SLILSHIA 45 (362)
Q Consensus 23 k~~~C~~C~~~f~-~~-~~l~~H~~ 45 (362)
+.|-|..|+..|. +. +.-..|.+
T Consensus 2 ~ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 2 PRYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp -S-B-TTT--B-S--SHHHHHHHT-
T ss_pred cCeecccccceecCCChHHHHHhhc
Confidence 5699999999994 33 33356654
No 154
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=27.15 E-value=71 Score=25.10 Aligned_cols=31 Identities=32% Similarity=0.647 Sum_probs=19.1
Q ss_pred ceeecccCccccccCchhHHHHHHhhcCCCcc
Q 048459 253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKP 284 (362)
Q Consensus 253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~ 284 (362)
+-.|..+.|.+. .+...|.+|.+..|...+|
T Consensus 107 ~RsC~~e~C~F~-GtY~eLrKHar~~HP~~rP 137 (162)
T PF07800_consen 107 KRSCSQESCSFS-GTYSELRKHARSEHPSARP 137 (162)
T ss_pred CccCcccccccc-cCHHHHHHHHHhhCCCCCC
Confidence 345555555543 3566777777777776655
No 155
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=27.05 E-value=65 Score=26.47 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred CCcccchhHHHHHHHhhccCCCCCceeecc--cCccccccCchhHHHHHHhhcCC
Q 048459 229 CGSMQLKKNIKRHVRTHEARDLSERIKCQF--KGCLLSFSTNSNLRQHVKAVHYE 281 (362)
Q Consensus 229 C~~~~~~~~l~~H~~~h~~~~~~~~~~C~~--~~C~~~f~~~~~L~~H~~~~H~~ 281 (362)
|...+.......|.....- +|+.|++ ..|+..= ....|..|+...|..
T Consensus 24 C~~~~~~~~~~~HE~~C~~----~p~~CP~~~~~C~~~G-~~~~l~~Hl~~~H~~ 73 (198)
T PF03145_consen 24 CTETFPYSEKREHEEECPF----RPCSCPFPGSGCDWQG-SYKELLDHLRDKHSW 73 (198)
T ss_dssp ---EE-GGGHHHHHHT-TT----SEEE-SSSSTT---EE-ECCCHHHHHHHHTTT
T ss_pred CcccccccChhhHhccCCC----cCCcCCCCCCCccccC-CHHHHHHHHHHHCCC
Confidence 4444444444555544432 4566644 3454332 334566666655543
No 156
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=26.68 E-value=16 Score=27.07 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=11.6
Q ss_pred CccccccccccccchH
Q 048459 23 RRYYCDYCGICRSKKS 38 (362)
Q Consensus 23 k~~~C~~C~~~f~~~~ 38 (362)
-.+.|..||..|.-..
T Consensus 69 ~~~~C~~Cg~~~~~~~ 84 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDE 84 (113)
T ss_dssp -EEEETTTS-EEECHH
T ss_pred CcEECCCCCCEEecCC
Confidence 3588999999998753
No 157
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=25.92 E-value=20 Score=30.45 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=11.7
Q ss_pred cccccCCCCCCceeccchhhhhhhhc
Q 048459 283 KPFACSFFGCGMRFAFKHVRDNHEKS 308 (362)
Q Consensus 283 ~~~~C~~~~C~~~f~~~~~l~~H~~~ 308 (362)
+++.|+. ||.....-..|..-.|+
T Consensus 208 k~~PCPK--Cg~et~eTkdLSmStR~ 231 (314)
T PF06524_consen 208 KPIPCPK--CGYETQETKDLSMSTRS 231 (314)
T ss_pred CCCCCCC--CCCcccccccceeeeec
Confidence 4455555 55555444444444443
No 158
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.02 E-value=28 Score=17.41 Aligned_cols=7 Identities=43% Similarity=1.474 Sum_probs=4.4
Q ss_pred ccccccc
Q 048459 69 CEECGAS 75 (362)
Q Consensus 69 C~~C~~~ 75 (362)
|+.||..
T Consensus 16 C~~CG~~ 22 (23)
T PF13240_consen 16 CPNCGTP 22 (23)
T ss_pred hhhhCCc
Confidence 7777654
No 159
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=24.93 E-value=75 Score=28.11 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=50.2
Q ss_pred cccccccccccCChhHHHHHHHhccCCCCeeccc--ccccccccChhHHHHHHHHcCCCcccCCcc--CCchhccChhHH
Q 048459 66 CNTCEECGASFKKPAYLKQHMLSHLLERPFRCSV--DDCHASYRRKDHLTRHLLRHQGKLFKCPIE--NCNREFTIQGNM 141 (362)
Q Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~--~C~~~f~~~~~l 141 (362)
...||.|...+... ..++|..-.....+.|+. -+|.+.|..... ..|.+.-...||.|++. +|+.. .....|
T Consensus 80 ~~~CP~Cr~~~g~~--R~~amEkV~e~~~vpC~~~~~GC~~~~~Y~~~-~~HE~~C~f~~~~CP~p~~~C~~~-G~~~~l 155 (299)
T KOG3002|consen 80 SNKCPTCRLPIGNI--RCRAMEKVAEAVLVPCKNAKLGCTKSFPYGEK-SKHEKVCEFRPCSCPVPGAECKYT-GSYKDL 155 (299)
T ss_pred cccCCccccccccH--HHHHHHHHHHhceecccccccCCceeeccccc-cccccccccCCcCCCCCcccCCcc-CcHHHH
Confidence 36788888888755 334444434444556642 367777776655 45655544478888876 56554 335567
Q ss_pred HHHHHHhcC
Q 048459 142 KRHVKELHH 150 (362)
Q Consensus 142 ~~H~~~~h~ 150 (362)
..|....|.
T Consensus 156 ~~H~~~~hk 164 (299)
T KOG3002|consen 156 YAHLNDTHK 164 (299)
T ss_pred HHHHHhhCh
Confidence 888776664
No 160
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=24.29 E-value=68 Score=19.10 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=6.3
Q ss_pred eeecccCcccccc
Q 048459 254 IKCQFKGCLLSFS 266 (362)
Q Consensus 254 ~~C~~~~C~~~f~ 266 (362)
|.| ..||..|.
T Consensus 3 Y~C--~~Cg~~~~ 13 (44)
T smart00659 3 YIC--GECGRENE 13 (44)
T ss_pred EEC--CCCCCEee
Confidence 556 55666554
No 161
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=24.20 E-value=30 Score=33.05 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=16.5
Q ss_pred CCCCCCCccccccccccccch
Q 048459 17 PKSRDVRRYYCDYCGICRSKK 37 (362)
Q Consensus 17 ~~~~~~k~~~C~~C~~~f~~~ 37 (362)
....+.+.|+|..||..|...
T Consensus 418 ~~~~~~~~~~c~~c~~~yd~~ 438 (479)
T PRK05452 418 TTADLGPRMQCSVCQWIYDPA 438 (479)
T ss_pred cccCCCCeEEECCCCeEECCC
Confidence 344567789999999998764
No 162
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=23.94 E-value=42 Score=25.41 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=36.5
Q ss_pred CCCcccccCCCCCCceeccchhhhhhhhccCccccCCCcccchhhhhcccc-CCCcCCCChhhHHHhhcc
Q 048459 280 YEIKPFACSFFGCGMRFAFKHVRDNHEKSGHHVYSSGDFVESDERFRSRER-GGRKRKCPTVEMLIRKRV 348 (362)
Q Consensus 280 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~c~~~f~~~~~-~~~~~~c~~c~~~~~~r~ 348 (362)
.+.+.|+|.+ |..+.....-| +|.+|-.-.+|+.-....+. ...+-.||.|...|+.-.
T Consensus 76 ~d~~lYeCnI--C~etS~ee~FL--------KPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 76 LDPKLYECNI--CKETSAEERFL--------KPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred cCCCceeccC--cccccchhhcC--------CcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4456788888 87765433222 34556556677777766653 334556888887776543
No 163
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=22.94 E-value=58 Score=30.15 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCCccccccccccccchHHHHHHHHhhccccc
Q 048459 21 DVRRYYCDYCGICRSKKSLILSHIASHHKEDE 52 (362)
Q Consensus 21 ~~k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 52 (362)
...-|.|++|.+.|.+.+.|..|+..-|.+..
T Consensus 12 i~egflCPiC~~dl~~~~~L~~H~d~eH~~ed 43 (505)
T KOG1842|consen 12 ILEGFLCPICLLDLPNLSALNDHLDVEHFEED 43 (505)
T ss_pred hhhcccCchHhhhhhhHHHHHHHHhhhccccc
Confidence 34559999999999999999999987766544
No 164
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=22.89 E-value=38 Score=18.29 Aligned_cols=25 Identities=20% Similarity=0.591 Sum_probs=9.4
Q ss_pred cccccccccCChhHHHHHHHhccCCCCeeccccccccc
Q 048459 68 TCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHAS 105 (362)
Q Consensus 68 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~ 105 (362)
.|+.|+..+.. .+...|.| +.|+..
T Consensus 4 ~Cp~C~se~~y-----------~D~~~~vC--p~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTY-----------EDGELLVC--PECGHE 28 (30)
T ss_dssp --TTT-----E-----------E-SSSEEE--TTTTEE
T ss_pred CCCCCCCccee-----------ccCCEEeC--Cccccc
Confidence 46777665554 34445677 446643
No 165
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.56 E-value=87 Score=26.73 Aligned_cols=85 Identities=18% Similarity=0.415 Sum_probs=41.1
Q ss_pred ccccccccccCChhHHHHHHHhccCCCCeecccccccccccChhHHHHHHHHcCCCcccCCccCCchhccChhHHHHHHH
Q 048459 67 NTCEECGASFKKPAYLKQHMLSHLLERPFRCSVDDCHASYRRKDHLTRHLLRHQGKLFKCPIENCNREFTIQGNMKRHVK 146 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~~~C~~~f~~~~~l~~H~~ 146 (362)
.+|..|+....-+. .-.|.+..+|+. .|--.....+ ....|+-.+|.+...-... |
T Consensus 86 VkC~~CnEATPIr~-------aPpGKKYVRCPC-NCLLICk~sS-----------~rIaCPRp~CkRiI~L~~~---~-- 141 (256)
T PF09788_consen 86 VKCSVCNEATPIRN-------APPGKKYVRCPC-NCLLICKSSS-----------QRIACPRPNCKRIINLGPS---H-- 141 (256)
T ss_pred EECCCCCccccccC-------CCCCCeeEecCC-ceEEEeeccc-----------ccccCCCCCCcceEEeCCc---c--
Confidence 45666766544321 234556667763 3333322211 2356776677775543322 0
Q ss_pred HhcCCCCCCCCCCCCCccccCCCCcchhccCH
Q 048459 147 ELHHEGTTSTDSGDQKQYICQEIGCGKVFKYA 178 (362)
Q Consensus 147 ~~h~~~~~~~~~~~~~~~~C~~~~C~~~f~~~ 178 (362)
............+.-.+.|.. |...|...
T Consensus 142 -~~p~~~~~~~~p~~~rv~Cgh--C~~~Fl~~ 170 (256)
T PF09788_consen 142 -QGPVTPPVPTQPGSCRVICGH--CSNTFLFN 170 (256)
T ss_pred -CCCCCCCCCCCCCceeEECCC--CCCcEecc
Confidence 001111111122345588888 88888655
No 166
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=21.93 E-value=47 Score=25.25 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=4.8
Q ss_pred ccchhhhhcc
Q 048459 319 VESDERFRSR 328 (362)
Q Consensus 319 ~~c~~~f~~~ 328 (362)
..|+++|...
T Consensus 57 ~~C~~tf~~~ 66 (129)
T COG3677 57 KSCGSTFTVE 66 (129)
T ss_pred CCcCcceeee
Confidence 3555555443
No 167
>PF14353 CpXC: CpXC protein
Probab=21.54 E-value=25 Score=26.56 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=21.1
Q ss_pred cccccCCCCCCceeccchhhhhhhhccC
Q 048459 283 KPFACSFFGCGMRFAFKHVRDNHEKSGH 310 (362)
Q Consensus 283 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h 310 (362)
..|.|+. ||..|.-...+..|-..+.
T Consensus 37 ~~~~CP~--Cg~~~~~~~p~lY~D~~~~ 62 (128)
T PF14353_consen 37 FSFTCPS--CGHKFRLEYPLLYHDPEKK 62 (128)
T ss_pred CEEECCC--CCCceecCCCEEEEcCCCC
Confidence 3589999 9999998888888877654
No 168
>PRK00420 hypothetical protein; Validated
Probab=21.53 E-value=50 Score=24.33 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=7.1
Q ss_pred CCCcCCCCCCcc
Q 048459 221 HQYIPCEICGSM 232 (362)
Q Consensus 221 h~~~~C~~C~~~ 232 (362)
.+...|+.||..
T Consensus 38 ~g~~~Cp~Cg~~ 49 (112)
T PRK00420 38 DGEVVCPVHGKV 49 (112)
T ss_pred CCceECCCCCCe
Confidence 455666666643
No 169
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=21.48 E-value=33 Score=20.16 Aligned_cols=15 Identities=27% Similarity=0.529 Sum_probs=10.1
Q ss_pred Cccccccccccccch
Q 048459 23 RRYYCDYCGICRSKK 37 (362)
Q Consensus 23 k~~~C~~C~~~f~~~ 37 (362)
-+|.|..|+..|=..
T Consensus 12 ~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLK 26 (43)
T ss_dssp SHEE-TTTS-EE-TT
T ss_pred CCeECCCCCcccCcc
Confidence 589999999999765
No 170
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.31 E-value=60 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.5
Q ss_pred cccccccccccchHHHHH
Q 048459 25 YYCDYCGICRSKKSLILS 42 (362)
Q Consensus 25 ~~C~~C~~~f~~~~~l~~ 42 (362)
=.|.+||+.|+-+..+.+
T Consensus 9 K~C~~C~rpf~WRKKW~~ 26 (42)
T PF10013_consen 9 KICPVCGRPFTWRKKWAR 26 (42)
T ss_pred CcCcccCCcchHHHHHHH
Confidence 469999999998876653
No 171
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=20.86 E-value=25 Score=30.75 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.1
Q ss_pred ccccccccccCChhHHHHH
Q 048459 67 NTCEECGASFKKPAYLKQH 85 (362)
Q Consensus 67 ~~C~~C~~~f~~~~~l~~H 85 (362)
|+||.|+..|-+..-++.|
T Consensus 20 YtCPRCn~~YCsl~CYr~h 38 (383)
T KOG4317|consen 20 YTCPRCNLLYCSLKCYRNH 38 (383)
T ss_pred ccCCCCCccceeeeeecCC
Confidence 8999999988877666555
No 172
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.27 E-value=70 Score=25.49 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=18.7
Q ss_pred ceeecccCccccccCchhHHHHHHhhcCCCcccccCCCCCCc
Q 048459 253 RIKCQFKGCLLSFSTNSNLRQHVKAVHYEIKPFACSFFGCGM 294 (362)
Q Consensus 253 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~ 294 (362)
.|.| ++||. .|.++.|-+|++ ||.
T Consensus 134 ~~vC--~vCGy--------------~~~ge~P~~CPi--Cga 157 (166)
T COG1592 134 VWVC--PVCGY--------------THEGEAPEVCPI--CGA 157 (166)
T ss_pred EEEc--CCCCC--------------cccCCCCCcCCC--CCC
Confidence 5889 77984 455688899999 984
No 173
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=20.11 E-value=43 Score=20.49 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=16.5
Q ss_pred CCccccccccccccchHHHHHHH
Q 048459 22 VRRYYCDYCGICRSKKSLILSHI 44 (362)
Q Consensus 22 ~k~~~C~~C~~~f~~~~~l~~H~ 44 (362)
.+.+.|..||..|.-...=+.-.
T Consensus 2 Dk~l~C~dCg~~FvfTa~EQ~fy 24 (49)
T PF13451_consen 2 DKTLTCKDCGAEFVFTAGEQKFY 24 (49)
T ss_pred CeeEEcccCCCeEEEehhHHHHH
Confidence 46789999999998765444433
No 174
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=20.10 E-value=43 Score=24.79 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=6.9
Q ss_pred ccccCCcCccCC
Q 048459 197 FCSEPGCMKYFT 208 (362)
Q Consensus 197 ~~~C~~C~~~f~ 208 (362)
.+.|..|+..|.
T Consensus 70 ~~~C~~Cg~~~~ 81 (114)
T PRK03681 70 ECWCETCQQYVT 81 (114)
T ss_pred EEEcccCCCeee
Confidence 345666766554
No 175
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=20.05 E-value=48 Score=20.40 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.3
Q ss_pred ccccccccccccch
Q 048459 24 RYYCDYCGICRSKK 37 (362)
Q Consensus 24 ~~~C~~C~~~f~~~ 37 (362)
.|+|..||..|...
T Consensus 1 ~y~C~~CgyiYd~~ 14 (50)
T cd00730 1 KYECRICGYIYDPA 14 (50)
T ss_pred CcCCCCCCeEECCC
Confidence 38899999988754
Done!