BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048461
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
Length = 408
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 132/294 (44%), Gaps = 43/294 (14%)
Query: 64 VDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIY 123
+ E L +++ EL P+ VTR+ T + A+ + + M +GL V EDA GN+
Sbjct: 2 IQGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLI 61
Query: 124 GEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------- 176
G G + V GSH+D++ G +DG GVL +E + +
Sbjct: 62 GRKE--------GTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTH 113
Query: 177 ----------------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEH 214
SR +AG +L + D + IS +A + AG +
Sbjct: 114 HPIEVVAFTDEEGARFRFGMIGSRAMAG--TLPPEALECRDAEGISLAEAMKQAGL--DP 169
Query: 215 NDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAV 274
+ L K G+ A+VELHIEQG +LE+ G +GIVT IA +K EG HAGA
Sbjct: 170 DRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAGAT 229
Query: 275 LMPNRNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQL 328
M R D +E+ +G+ TVGTVG L ++PG IN IP + +
Sbjct: 230 PMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHVYPGGINVIPERVEF 281
>pdb|1Z2L|A Chain A, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
pdb|1Z2L|B Chain B, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli
K12 In Complex With Substrate Allantoate
Length = 423
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 136/326 (41%), Gaps = 54/326 (16%)
Query: 67 ETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEI 126
+ +++ + LS+F PA +TR+L++ + + K M SGL R D VGN+YG +
Sbjct: 9 QAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRL 68
Query: 127 SSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESL 186
+ G E V +GSHID + G DG G L A AI+ LK++ A + ++
Sbjct: 69 N--------GTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTV 120
Query: 187 ----------------------------AKDLTSIVDGKNISFLDAARSAGYAKEHNDLS 218
D+ +I D K SF+DA ++ G+ + L+
Sbjct: 121 EVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLT 180
Query: 219 SVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPN 278
+ AFVELHIEQG +LE G SIG+V AI G HAG M
Sbjct: 181 P----RQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGY 236
Query: 279 RNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSH---- 334
R D + G V T G +E P +N +P K+ I H
Sbjct: 237 RRDTVYAFSRICHQSVEKAKRMGD-PLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAA 295
Query: 335 ---------KPEEYASCEDMENGVKV 351
+ + A C++M+ G+ +
Sbjct: 296 VLRDFTQQLENDMRAICDEMDIGIDI 321
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 331 GYSHKPEEYASCEDMENGVKVLALTLAKLSLQ 362
G SH P E + D+ GVK LAL L +L+ Q
Sbjct: 381 GISHNPAERTNITDLAEGVKTLALMLYQLAWQ 412
>pdb|2IMO|A Chain A, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
pdb|2IMO|B Chain B, Crystal Structure Of Allantoate Amidohydrolase From
Escherichia Coli At Ph 4.6
Length = 423
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 124/297 (41%), Gaps = 43/297 (14%)
Query: 67 ETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEI 126
+ +++ + LS+F PA TR+L++ + + K SGL R D VGN+YG +
Sbjct: 9 QAIEETLPWLSSFGADPAGGXTRLLYSPEWLETQQQFKKRXAASGLETRFDEVGNLYGRL 68
Query: 127 SSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESL 186
+ G E V +GSHID + G DG G L A AI+ LK++ A + ++
Sbjct: 69 N--------GTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTV 120
Query: 187 ----------------------------AKDLTSIVDGKNISFLDAARSAGYAKEHNDLS 218
D+ +I D K SF+DA ++ G+ + L+
Sbjct: 121 EVVAXAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAXKACGFTLPNAPLT 180
Query: 219 SVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPN 278
+ AFVELHIEQG +LE G SIG+V AI G HAG
Sbjct: 181 P----RQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPXGY 236
Query: 279 RNDXXXXXXX-XXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSH 334
R D VEK + V T G +E P +N +P K+ I H
Sbjct: 237 RRDTVYAFSRICHQSVEKAKRXGDPL--VLTFGKVEPRPNTVNVVPGKTTFTIDCRH 291
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 331 GYSHKPEEYASCEDMENGVKVLALTLAKLSLQ 362
G SH P E + D+ GVK LAL L +L+ Q
Sbjct: 381 GISHNPAERTNITDLAEGVKTLALXLYQLAWQ 412
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|B Chain B, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|C Chain C, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|D Chain D, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
Length = 474
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 117/287 (40%), Gaps = 55/287 (19%)
Query: 87 VTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVAT 146
+ R+ T D R + N G V+ D +GN++ + G AT
Sbjct: 60 MRRLAGTALDGAMRDWFTNECESLGCKVKVDKIGNMFAVYPGKNGG---------KPTAT 110
Query: 147 GSHIDAIPYSGKYDGVTGVLGALEAINVLK-----------------------SRLLAGI 183
GSH+D P +GKYDG+ GVL LE + K +R G
Sbjct: 111 GSHLDTQPEAGKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCTGS 170
Query: 184 ESLAKDLT--------SIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHI 235
+ DL+ S+ + K S D+ ++ GY + + K+ A ELHI
Sbjct: 171 SVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGD----TPASYKENEIDAHFELHI 226
Query: 236 EQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDXXXXXXXXXXXVEK 295
EQGPILE E +IGIVT + A K G G HAG R D K
Sbjct: 227 EQGPILEDENKAIGIVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSS-------K 279
Query: 296 HVLESGSI----DTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEE 338
++ + I + + T GI++ P ++N IP + + ++H ++
Sbjct: 280 MIVAASEIAQRHNGLFTCGIIDAKPYSVNIIPGEVSFTLDFAHPSDD 326
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 316 PGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVL 352
P ++ IP K G SH EY+S E++ENG KVL
Sbjct: 406 PTSMIFIPSKD----GLSHNYYEYSSPEEIENGFKVL 438
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 116/287 (40%), Gaps = 55/287 (19%)
Query: 87 VTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVAT 146
+ R+ T D R + N G V+ D +GN++ + G AT
Sbjct: 60 MRRLAGTALDGAMRDWFTNECESLGCKVKVDKIGNMFAVYPGKNGG---------KPTAT 110
Query: 147 GSHIDAIPYSGKYDGVTGVLGALEAINVLK-----------------------SRLLAGI 183
GSH+D P +GKYDG+ GVL LE + K +R G
Sbjct: 111 GSHLDTQPEAGKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCTGS 170
Query: 184 ESLAKDLT--------SIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHI 235
+ DL+ S+ + K S D+ ++ GY + + K+ A ELHI
Sbjct: 171 SVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGD----TPASYKENEIDAHFELHI 226
Query: 236 EQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDXXXXXXXXXXXVEK 295
EQGPILE E +IGIVT + A K G G HAG R D K
Sbjct: 227 EQGPILEDENKAIGIVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSS-------K 279
Query: 296 HVLESGSI----DTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEE 338
++ + I + + T GI++ P ++N IP + + + H ++
Sbjct: 280 MIVAASEIAQRHNGLFTCGIIDAKPYSVNIIPGEVSFTLDFRHPSDD 326
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 316 PGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVL 352
P ++ IP K G SH EY+S E++ENG KVL
Sbjct: 406 PTSMIFIPSKD----GLSHNYYEYSSPEEIENGFKVL 438
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8D|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8H|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|C Chain C, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|D Chain D, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
Length = 474
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 116/287 (40%), Gaps = 55/287 (19%)
Query: 87 VTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVAT 146
+ R+ T D R + N G V+ D +GN++ + G AT
Sbjct: 60 MRRLAGTALDGAMRDWFTNECESLGCKVKVDKIGNMFAVYPGKNGG---------KPTAT 110
Query: 147 GSHIDAIPYSGKYDGVTGVLGALEAINVLK-----------------------SRLLAGI 183
GSH+D P +GKYDG+ GVL LE + K +R G
Sbjct: 111 GSHLDTQPEAGKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEGARFARSCTGS 170
Query: 184 ESLAKDLT--------SIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHI 235
+ DL+ S+ + K S D+ ++ GY + + K+ A ELHI
Sbjct: 171 SVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGD----TPASYKENEIDAHFELHI 226
Query: 236 EQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDXXXXXXXXXXXVEK 295
EQGPILE E +IGIVT + A K G G HAG R D K
Sbjct: 227 EQGPILEDENKAIGIVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSS-------K 279
Query: 296 HVLESGSI----DTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEE 338
++ + I + + T GI++ P ++N IP + + + H ++
Sbjct: 280 MIVAASEIAQRHNGLFTCGIIDAKPYSVNIIPGEVSFTLDFRHPSDD 326
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 316 PGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVL 352
P ++ IP K G SH EY+S E++ENG KVL
Sbjct: 406 PTSMIFIPSKD----GLSHNYYEYSSPEEIENGFKVL 438
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 116/287 (40%), Gaps = 55/287 (19%)
Query: 87 VTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVAT 146
+ R+ T D R + N G V+ D +GN++ + G AT
Sbjct: 60 MRRLAGTALDGAMRDWFTNECESLGCKVKVDKIGNMFAVYPGKNGG---------KPTAT 110
Query: 147 GSHIDAIPYSGKYDGVTGVLGALEAINVLK-----------------------SRLLAGI 183
GSH+D P +GKYDG+ GVL LE + K +R G
Sbjct: 111 GSHLDTQPEAGKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCTGS 170
Query: 184 ESLAKDLT--------SIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHI 235
+ DL+ S+ + K S D+ ++ GY + + K+ A ELHI
Sbjct: 171 SVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGD----TPASYKENEIDAHFELHI 226
Query: 236 EQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDXXXXXXXXXXXVEK 295
EQGPILE E +IGIVT + A K G G HAG R D K
Sbjct: 227 EQGPILEDENKAIGIVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSS-------K 279
Query: 296 HVLESGSI----DTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEE 338
++ + I + + T GI++ P ++N IP + + + H ++
Sbjct: 280 MIVAASEIAQRHNGLFTCGIIDAKPYSVNIIPGEVSFTLDFRHPSDD 326
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 316 PGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVL 352
P ++ IP K G SH EY+S E++ENG KVL
Sbjct: 406 PTSMIFIPSKD----GLSHNYYEYSSPEEIENGFKVL 438
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
pdb|1R43|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
Length = 463
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 115/285 (40%), Gaps = 55/285 (19%)
Query: 89 RVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGS 148
R+ T D R + N G V+ D +GN + + G ATGS
Sbjct: 63 RLAGTALDGAXRDWFTNECESLGCKVKVDKIGNXFAVYPGKNGG---------KPTATGS 113
Query: 149 HIDAIPYSGKYDGVTGVLGALEAINVLK-----------------------SRLLAGIES 185
H+D P +GKYDG+ GVL LE + K +R G
Sbjct: 114 HLDTQPEAGKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCTGSSV 173
Query: 186 LAKDLT--------SIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQ 237
+ DL+ S+ + K S D+ ++ GY + + K+ A ELHIEQ
Sbjct: 174 WSHDLSLEEAYGLXSVGEDKPESVYDSLKNIGYIGD----TPASYKENEIDAHFELHIEQ 229
Query: 238 GPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDXXXXXXXXXXXVEKHV 297
GPILE E +IGIVT + A K G G HAG R D K +
Sbjct: 230 GPILEDENKAIGIVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLXSS-------KXI 282
Query: 298 LESGSI----DTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEE 338
+ + I + + T GI++ P ++N IP + + + H ++
Sbjct: 283 VAASEIAQRHNGLFTCGIIDAKPYSVNIIPGEVSFTLDFRHPSDD 327
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 331 GYSHKPEEYASCEDMENGVKVL 352
G SH EY+S E++ENG KVL
Sbjct: 418 GLSHNYYEYSSPEEIENGFKVL 439
>pdb|1QIU|A Chain A, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|B Chain B, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|C Chain C, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|D Chain D, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|E Chain E, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|F Chain F, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
Length = 264
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 44 SGYPIHESNSFVTNLVSSLSVDTE---TLQKQIDELSTFSDTPAPSVTRVLHTEND---- 96
SG +E+ + +T L + LS D T+ + D+ T TP PS +H++ND
Sbjct: 45 SGIDYNENGAMITKLGAGLSFDNSGAITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFT 104
Query: 97 -VLARSYIKNLMGISGLSVREDAVGNIYGEISSSS-------RGVWIGN---EAELASVA 145
VL + + L ++ L+V D + ++ G ++S S GV + N + +
Sbjct: 105 LVLTKCGSQVLATVAALAVSGD-LSSMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFR 163
Query: 146 TGSHIDAIPYS 156
G+ +A PY+
Sbjct: 164 NGNSTNANPYT 174
>pdb|3EZ1|A Chain A, Crystal Structure Of Putative Aminotransferase (Mocr
Family) (Yp_604413.1) From Deinococcus Geothermalis Dsm
11300 At 2.60 A Resolution
pdb|3EZ1|B Chain B, Crystal Structure Of Putative Aminotransferase (Mocr
Family) (Yp_604413.1) From Deinococcus Geothermalis Dsm
11300 At 2.60 A Resolution
Length = 423
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 13/54 (24%)
Query: 170 EAINVLKSRLLAGIESLAKDLTSIVD-------------GKNISFLDAARSAGY 210
E I++ K+R LAG+++ A D T D + ++F+ AR AGY
Sbjct: 188 ETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGY 241
>pdb|1NIO|A Chain A, Crystal Structure Of Beta-Luffin, A Ribosome Inactivating
Protein At 2.0a Resolution
Length = 247
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 119 VGNIY--GEISSSSRGVWIGNEAELAS--VATGSHIDAIPYSGKYDGVTGVLGALE 170
V N+Y G + +S+ + ++A+LAS V GS I +PYSG Y+ + G +
Sbjct: 67 VTNVYIMGYLVNSTSYFFNESDAKLASQYVFKGSTIVTLPYSGNYERLQNAAGKVR 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,831,499
Number of Sequences: 62578
Number of extensions: 387899
Number of successful extensions: 762
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 39
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)