BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048461
(362 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q57051|Y588_HAEIN Uncharacterized hydrolase HI_0588 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0588 PE=1 SV=1
Length = 411
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 42/291 (14%)
Query: 62 LSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGN 121
+S++ +Q I++L+ S P +TR+ TE D A + I L LS+R D++GN
Sbjct: 1 MSINLNRVQNLIEKLAFISSVPN-ELTRLAFTEEDEKAHNMIIELCKEYDLSIRRDSIGN 59
Query: 122 IYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAI------NV- 174
++ + G E L +VA GSHID + +GK+DG G + LE + N+
Sbjct: 60 LFIRKA--------GKEDFLPAVAFGSHIDTVVNAGKFDGPLGSVAGLEILLQLCEQNIQ 111
Query: 175 ----------------------LKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAK 212
L S+++ GI + K L+S+ D + +A G
Sbjct: 112 TRYPLELIIFTCEESSRFNFATLGSKVMCGIVNQEK-LSSLRDKQGKGLSEAMAEVGM-- 168
Query: 213 EHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAG 272
N ++ + F ELHIEQGP LE EG +IG+VT IAAP +G H+G
Sbjct: 169 NFNLVNQAKRDAKEFKCFFELHIEQGPRLENEGKTIGVVTGIAAPIRAIVKIKGQADHSG 228
Query: 273 AVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIP 323
A M R+DA L +EL+LA+E+ +++G TV TVG + PG +N +P
Sbjct: 229 ATAMHYRHDALLGGSELSLAIERAAIQAGH-STVATVGNITAKPGVMNVVP 278
>sp|Q53389|AMAB2_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=1 SV=1
Length = 409
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 138/294 (46%), Gaps = 43/294 (14%)
Query: 64 VDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIY 123
+ E L +++ EL P+ VTR+ T + A+ + + M +GL V EDA GN+
Sbjct: 2 IQGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLI 61
Query: 124 GEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------- 176
G G + V GSH+D++ G +DG GVL +E + +
Sbjct: 62 GRKE--------GTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTH 113
Query: 177 ----------------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEH 214
SR +AG +L + D + IS +A + AG +
Sbjct: 114 HPIEVVAFTDEEGARFRFGMIGSRAMAG--TLPPEALECRDAEGISLAEAMKQAGL--DP 169
Query: 215 NDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAV 274
+ L K G+ A+VELHIEQG +LE+ G +GIVT IA +K EG HAGA
Sbjct: 170 DRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAGAT 229
Query: 275 LMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQL 328
M R D AAA++ + +E+ +G+ TVGTVG L ++PG IN IP + +
Sbjct: 230 PMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHVYPGGINVIPERVEF 281
>sp|Q01264|HYUC_PSESN Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671)
GN=hyuC PE=1 SV=1
Length = 414
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 132/293 (45%), Gaps = 37/293 (12%)
Query: 59 VSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDA 118
+ ++++ E L+ I++L T V R+ ++ D A + M +GL+V D
Sbjct: 1 MKTVTISKERLRIHIEQLGEIGKTKDKGVQRLALSKEDREATLLVSEWMREAGLTVTHDH 60
Query: 119 VGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK-- 176
GN+ G G L SV GSHID++ GK+DGV GVL +E ++ +
Sbjct: 61 FGNLIGRKE--------GETPSLPSVMIGSHIDSVRNGGKFDGVIGVLAGIEIVHAISEA 112
Query: 177 ------------------SRLLAGI--------ESLAKDLTSIVDGKNISFLDAARSAGY 210
SR G+ + +DL VD N++ +A ++ G+
Sbjct: 113 NVVHEHSIEVVAFCEEEGSRFNDGLFGSRGMVGKVKPEDLQK-VDDNNVTRYEALKTFGF 171
Query: 211 AKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGH 270
+ + + G + E+HIEQGP LEK IGIV+ IA P+ K G GH
Sbjct: 172 GIDPDFTHQSIREIGDIKHYFEMHIEQGPYLEKNNYPIGIVSGIAGPSWFKVRLVGEAGH 231
Query: 271 AGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIP 323
AG V M R D + AAE+ VE + + TVGTVG + PG N IP
Sbjct: 232 AGTVPMSLRKDPLVGAAEVIKEVETLCMNDPNAPTVGTVGRIAAFPGGSNIIP 284
>sp|P77425|ALLC_ECOLI Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC
PE=1 SV=1
Length = 411
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 142/327 (43%), Gaps = 56/327 (17%)
Query: 67 ETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEI 126
+ +++ + LS+F PA +TR+L++ + + K M SGL R D VGN+YG +
Sbjct: 7 QAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRL 66
Query: 127 SSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESL 186
+ G E V +GSHID + G DG G L A AI+ LK++ A + ++
Sbjct: 67 N--------GTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTV 118
Query: 187 ----------------------------AKDLTSIVDGKNISFLDAARSAGYAKEHNDLS 218
D+ +I D K SF+DA ++ G+ + L+
Sbjct: 119 EVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLT 178
Query: 219 SVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPN 278
+ AFVELHIEQG +LE G SIG+V AI G HAG M
Sbjct: 179 P----RQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGY 234
Query: 279 RNDAGLAAAELA-LAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSH--- 334
R D A + + +VEK + V T G +E P +N +P K+ I H
Sbjct: 235 RRDTVYAFSRICHQSVEKAKRMGDPL--VLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDA 292
Query: 335 ----------KPEEYASCEDMENGVKV 351
+ + A C++M+ G+ +
Sbjct: 293 AVLRDFTQQLENDMRAICDEMDIGIDI 319
>sp|P37113|AMAB1_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=3 SV=2
Length = 409
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 137/294 (46%), Gaps = 43/294 (14%)
Query: 64 VDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIY 123
+ E L +++ EL P+ VTR+ T + A+ + + M +GL V EDA GN+
Sbjct: 2 IQGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLI 61
Query: 124 GEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------- 176
G G + V GSH+D++ G +DG GVL +E + +
Sbjct: 62 GRKE--------GTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTH 113
Query: 177 ----------------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEH 214
SR +AG +L + D + IS +A + AG +
Sbjct: 114 HPIEVVAFTDEEGARFRFGMIGSRAMAG--TLPPEALECRDAEGISLAEAMKQAGL--DP 169
Query: 215 NDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAV 274
+ L K G+ A+VELHIEQG +LE+ G +GIVT IA +K G HAGA
Sbjct: 170 DRLPQAARKPGTVKAYVELHIEQGRVLEEAGLPVGIVTGIAGLIWVKFTIAGPAEHAGAT 229
Query: 275 LMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQL 328
M R D AAA++ + +E+ +G+ TVGTVG L ++PG IN IP + +
Sbjct: 230 PMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHVYPGGINVIPERVEF 281
>sp|O32149|ALLC_BACSU Allantoate amidohydrolase OS=Bacillus subtilis (strain 168) GN=pucF
PE=2 SV=1
Length = 412
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 132/291 (45%), Gaps = 41/291 (14%)
Query: 73 IDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRG 132
I+ L+ + + VTR+L+T+ + A+ +K M GL R D VGN++G +S
Sbjct: 16 IEWLAQYGASADGGVTRLLYTKEWMDAQLAVKTEMSSFGLETRFDDVGNVFGRLS----- 70
Query: 133 VWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTS 192
G ++ + TGSHID + GKYDG GVL A+ A+ LK A ++L + S
Sbjct: 71 ---GTQSPDEVIVTGSHIDTVINGGKYDGAYGVLAAMLALKQLKETYGAPKKTL--EAVS 125
Query: 193 IVDGKNISF---------LDAARSAGYAKEHNDLSSVFLK---------KGSYF------ 228
+ + + F + S AKE D S V L+ KG +
Sbjct: 126 LCEEEGSRFPMTYWGSGNMTGVFSEQDAKEPRDESGVSLQTAMHESGFGKGVFQSAYRTD 185
Query: 229 --AFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAA 286
AFVELHIEQG LE G +GIVT+IA EG HAG M R D A+
Sbjct: 186 ISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNHAGTTSMKWRKDPLAAS 245
Query: 287 AELALAVEKHVLESGSI--DTVGTVGILELHPGAINSIPIKSQLEIGYSHK 335
+ + + + +L S + + T G + P N IP + Q I H+
Sbjct: 246 SRI---IHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFSIDIRHQ 293
>sp|O49434|AAH_ARATH Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH
PE=1 SV=2
Length = 525
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 130/303 (42%), Gaps = 65/303 (21%)
Query: 72 QIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEI---SS 128
++ EL SD A + R + + A I+ M +GLS D +GN++G + +
Sbjct: 99 RLHELGQVSDA-ATHLERTFMSPASIRAIPLIRGWMEDAGLSTWVDYMGNVHGRVEPKNG 157
Query: 129 SSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------------ 176
SS+ + IG SH+D + +GKYDG G++ A+ A+ VLK
Sbjct: 158 SSQALLIG-----------SHMDTVIDAGKYDGSLGIISAISALKVLKIDGRLGELKRPV 206
Query: 177 -------------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDL 217
S LAGI +++ + D IS DA + +L
Sbjct: 207 EVIAFSDEEGVRFQSTFLGSAALAGIMPVSR--LEVTDKSGISVQDALKENSIDITDENL 264
Query: 218 SSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMP 277
+ S + +VE+HIEQGP+LE G +G+V IA +K +G+ GHAG V M
Sbjct: 265 MQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGVVKGIAGQTRLKVTVKGSQGHAGTVPMS 324
Query: 278 NRNDAGLAAAELALAVE-----------------KHVLESGSIDTVGTVGILELHPGAIN 320
R D AAEL + +E + +ES + V TVG + P A N
Sbjct: 325 MRQDPMTGAAELIVLLESVCKNPKDYLSCNVQCNEDTVESLANSLVCTVGEISTWPSASN 384
Query: 321 SIP 323
IP
Sbjct: 385 VIP 387
>sp|A0QZE3|Y3995_MYCS2 Putative hydrolase MSMEG_3995/MSMEI_3903 OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_3995 PE=1 SV=1
Length = 438
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 117/282 (41%), Gaps = 50/282 (17%)
Query: 56 TNLVSSLSVDTETLQKQID---ELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGL 112
TNL + +DT ++ +D EL TPA V R T D R ++ + G
Sbjct: 8 TNL--RIPLDTGRDREFLDSWAELEAIGATPAGGVERQAGTAEDGQMRDWLSRWLRTRGF 65
Query: 113 SVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVL-GALEA 171
SV D +GN++G + + + V GSH+D+ P G++DG GVL GA+ A
Sbjct: 66 SVEVDPIGNLFGLLEFNPGAPY---------VLVGSHLDSQPRGGRFDGAYGVLAGAVAA 116
Query: 172 --------------------------------INVLKSRLLAGIESLAKDLTSIVDGKNI 199
+++ S + G L + L + D +
Sbjct: 117 DRTRRYVTRSGFTPRYNVAVVDWFNEEGSRFKPSMMGSAVFTGTLDLEEALNT-TDDDGV 175
Query: 200 SFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPAS 259
S DA + + SS ++ A+ E+HIEQG LEK +IG+V A
Sbjct: 176 SVRDALAAINGIGDREVFSSTGPRQ--LAAYAEIHIEQGRELEKNNVTIGLVDRTWAANK 233
Query: 260 IKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESG 301
+ + G GH GA + +R DA L AA + +A+ E G
Sbjct: 234 YELNVVGIQGHTGATAIEDRQDALLGAALIVVALRDIADEFG 275
>sp|Q2GDF7|MUTL_NEOSM DNA mismatch repair protein MutL OS=Neorickettsia sennetsu (strain
Miyayama) GN=mutL PE=3 SV=1
Length = 652
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 238 GPILEKEGTSIG--IVTAI-AAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVE 294
G ILEK ++ + AI A SIK + E G + V N G++ +L LA+E
Sbjct: 17 GEILEKPANAVKELVENAIDAGSTSIKVELEEVGRNLIRV---TDNGVGISREDLPLAIE 73
Query: 295 KHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIG 331
KH + + + L A++SI I S+++I
Sbjct: 74 KHATSKLNTKDLYDISYLGFRGEALHSIAITSEMKIA 110
>sp|Q5SNZ0|GRDN_MOUSE Girdin OS=Mus musculus GN=Ccdc88a PE=1 SV=2
Length = 1873
Score = 33.1 bits (74), Expect = 3.2, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 49 HESNSFVTNLVSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTEND 96
HE N ++ + L ++ ++L K ++EL + +D+ A S +++L E +
Sbjct: 452 HEVNELTSSKLLKLEMENQSLTKTVEELRSTADSAAGSTSKILKVEKE 499
>sp|Q0Q4F2|SPIKE_BC133 Spike glycoprotein OS=Bat coronavirus 133/2005 GN=S PE=3 SV=1
Length = 1350
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 7 NSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDT 66
N +H+ VP + +++A Y N + + GY F+TN ++ SVDT
Sbjct: 1129 NGFYFFHVGYVPTNYTNVTAAYGLCNHNNPPLCIAPIDGY-------FITNQTTTYSVDT 1181
Query: 67 E 67
E
Sbjct: 1182 E 1182
>sp|A3EX94|SPIKE_BCHK4 Spike glycoprotein OS=Bat coronavirus HKU4 GN=S PE=3 SV=1
Length = 1352
Score = 31.6 bits (70), Expect = 8.8, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 7 NSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDT 66
N +H+ VP + +++A Y N + + GY F+TN ++ SVDT
Sbjct: 1131 NGFYFFHVGYVPTNYTNVTAAYGLCNNNNPPLCIAPIDGY-------FITNQTTTYSVDT 1183
Query: 67 E 67
E
Sbjct: 1184 E 1184
>sp|Q3AYD4|PROA_SYNS9 Gamma-glutamyl phosphate reductase OS=Synechococcus sp. (strain
CC9902) GN=proA PE=3 SV=2
Length = 437
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 50 ESNSFVTNLVSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDV-LARSYIKNLMG 108
E+ + L++ L +D LQ ID + + P P R LH E D L I +G
Sbjct: 63 EAEGLASALMARLKLDATKLQAAIDGVRKVASLPDPLGLRQLHRELDTDLVLERITVPLG 122
Query: 109 ISGL--SVREDAVGNIYGEISSSSRGVWI--GNEAE 140
+ G+ R DAV I S G + G+EA
Sbjct: 123 VVGVIFEARPDAVVQIASLAIRSGNGALLKGGSEAR 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,337,650
Number of Sequences: 539616
Number of extensions: 5288237
Number of successful extensions: 12190
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 12135
Number of HSP's gapped (non-prelim): 75
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)