BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048462
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGM 59
+ L L L +N ++P + NL +++LSN R+ G++P I L+NL IL+L
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 60 RYLAFVPCQV 69
+ +P ++
Sbjct: 525 SFSGNIPAEL 534
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRY 61
++ LD+SYN+ +P+ IG + L LNL + I G +P + L+ L IL L +
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 62 LAFVPCQVISSLSSL 76
+P Q +S+L+ L
Sbjct: 693 DGRIP-QAMSALTML 706
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLS-NTRIGQLPTGITYLKNLKILRLDGMRYL 62
L L LS+N +P ++G L L L L N G++P + Y+K L+ L LD
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 63 AFVPCQVISSLSSLQVFSWFS 83
+P S LS+ +W S
Sbjct: 480 GEIP----SGLSNCTNLNWIS 496
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGM 59
+ L L L +N ++P + NL +++LSN R+ G++P I L+NL IL+L
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 60 RYLAFVPCQV 69
+ +P ++
Sbjct: 522 SFSGNIPAEL 531
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRY 61
++ LD+SYN+ +P+ IG + L LNL + I G +P + L+ L IL L +
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 62 LAFVPCQVISSLSSL 76
+P Q +S+L+ L
Sbjct: 690 DGRIP-QAMSALTML 703
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLS-NTRIGQLPTGITYLKNLKILRLDGMRYL 62
L L LS+N +P ++G L L L L N G++P + Y+K L+ L LD
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 63 AFVPCQVISSLSSLQVFSWFS 83
+P S LS+ +W S
Sbjct: 477 GEIP----SGLSNCTNLNWIS 493
>pdb|3O0Y|A Chain A, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|B Chain B, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|C Chain C, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
Length = 609
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 168 KNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTY 227
+ND FGD GR + FR +R L V T + D +W R +SY +SE GT
Sbjct: 488 ENDPFGDLGRLQAELFRAVR-LVVDT--GLHDKRWTREQA------ISY---MSEQTGTA 535
Query: 228 ESPGTSEIE 236
ES +EIE
Sbjct: 536 ESDVVAEIE 544
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 4 LAVLDLSYNLDLVKLPEAI-GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYL 62
L VLDL N L LP A+ +L++L L + ++ +LP GI L +L L LD L
Sbjct: 90 LTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD-QNQL 147
Query: 63 AFVPCQVISSLSSL 76
+P LSSL
Sbjct: 148 KSIPHGAFDRLSSL 161
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 19 PEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ 77
P LINL L L + ++G LP G+ L L +L L G L +P V L L+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLK 115
Query: 78 VFSWFSTELVEL 89
+L EL
Sbjct: 116 ELFMCCNKLTEL 127
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 15 LVKLPEAI-GKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPCQVISS 72
L LP+ + KL NL YLNL++ ++ LP G+ L NL L L L +P V
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDK 179
Query: 73 LSSLQVFSWFSTEL 86
L+ L+ + +L
Sbjct: 180 LTQLKDLRLYQNQL 193
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 15 LVKLPEAI-GKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPCQVISS 72
L LP + KL +L YLNLS ++ LP G+ L LK L L+ L +P V
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDK 122
Query: 73 LSSLQVFSWFSTELVELHYVDSTSVLAELESLENI--HD 109
L+ L+ + +L + V L SL+ I HD
Sbjct: 123 LTQLKDLRLYQNQLKSV----PDGVFDRLTSLQYIWLHD 157
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 15 LVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLS 74
L +LP+ + L L L+ + LP I L L+ L + L +P + S+ +
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 75 SLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVN-RVKSSPKLQ--- 130
S + + + + L + S+ A + +L+N+ + + + A+ + PKL+
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235
Query: 131 -----------------SCIKRLAVVLMASFL-LPLDL-RMDHLETLEIDRC 163
+ +KRL + ++ L LPLD+ R+ LE L++ C
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 24/109 (22%)
Query: 186 LRHLSVKTCPCMTDLKWIRYAP----------NLQFLYVSYCPRLSEIIGTYESPGTSEI 235
LR LS++ CP +T+L + NLQ L + + G +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-------------GIRSL 198
Query: 236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284
S NL + +R+ P L+++ + P L+ + + GC +LR P
Sbjct: 199 PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYP 246
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 203 IRYAPNLQFLYVSYCPRLSEII-GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICC 261
+R P QF ++ RLS + T ++ G E+ ++ F+ L + L P L ++
Sbjct: 88 LRSVPLPQFPDQAF--RLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNP-LRALPA 144
Query: 262 GVVPFPSLQTISVNGCPSLRKLP 284
+ L+ +S+ CP L +LP
Sbjct: 145 SIASLNRLRELSIRACPELTELP 167
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDG 58
L VLDLS+N L LP +G L Y + + LP L NL+ L ++G
Sbjct: 272 LRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 6 VLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFV 65
LDLS NL + + I K L L L+ + +LP I L NL++L L R L +
Sbjct: 228 ALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSL 285
Query: 66 PCQVISSLSSLQVFSWFSTELVELHY 91
P + + S L+ F +F + L +
Sbjct: 286 PAE-LGSCFQLKYFYFFDNMVTTLPW 310
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2
At 1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2
At 1.50 A Resolution
Length = 197
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 28 LCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78
L Y+ L+N + L TGI Y N+K L ++ + + P +S+L L++
Sbjct: 46 LTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRI 95
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITY-LKNLKILRLDGMRYL 62
L VL+L+YN EA L NL LNLS +G+L + Y L + + L ++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK-NHI 350
Query: 63 AFVPCQVISSLSSLQVFSWFSTELVELHYVDS 94
A + Q L LQ L +H++ S
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 31 LNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81
L+L N RI +P +T+L+ L+ L + L VP V L+SLQ + W
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNV-ASNQLKSVPDGVFDRLTSLQ-YIW 503
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,260,020
Number of Sequences: 62578
Number of extensions: 311147
Number of successful extensions: 631
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 35
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)