Query 048462
Match_columns 325
No_of_seqs 157 out of 2150
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1E-20 2.3E-25 190.9 17.5 257 3-284 612-910 (1153)
2 PLN00113 leucine-rich repeat r 99.9 8.7E-21 1.9E-25 190.3 16.2 196 2-218 140-343 (968)
3 PLN00113 leucine-rich repeat r 99.8 1.6E-20 3.4E-25 188.5 15.2 266 1-287 163-448 (968)
4 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.4E-26 175.6 -4.0 281 1-318 77-390 (1255)
5 KOG4658 Apoptotic ATPase [Sign 99.8 5.5E-20 1.2E-24 177.9 6.8 308 1-318 570-883 (889)
6 PLN03210 Resistant to P. syrin 99.8 1.2E-17 2.6E-22 169.0 17.1 243 3-285 590-843 (1153)
7 KOG4194 Membrane glycoprotein 99.7 7.7E-18 1.7E-22 149.9 7.0 250 4-286 80-335 (873)
8 KOG4194 Membrane glycoprotein 99.7 8.4E-19 1.8E-23 155.9 0.7 246 3-277 150-426 (873)
9 KOG0472 Leucine-rich repeat pr 99.7 2.1E-19 4.5E-24 153.2 -8.5 250 3-291 46-298 (565)
10 KOG0444 Cytoskeletal regulator 99.7 3.4E-18 7.4E-23 153.4 -3.9 111 1-119 6-117 (1255)
11 KOG0472 Leucine-rich repeat pr 99.5 6E-17 1.3E-21 138.4 -7.4 237 2-278 68-308 (565)
12 KOG0618 Serine/threonine phosp 99.5 4.4E-16 9.6E-21 145.3 -3.9 82 2-86 241-322 (1081)
13 PRK15370 E3 ubiquitin-protein 99.5 4.2E-14 9.2E-19 135.3 9.1 229 3-287 179-407 (754)
14 PRK15370 E3 ubiquitin-protein 99.5 5E-14 1.1E-18 134.8 9.0 224 2-278 199-426 (754)
15 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.2E-18 131.1 12.0 232 4-278 203-456 (788)
16 KOG0618 Serine/threonine phosp 99.5 5.1E-15 1.1E-19 138.4 -1.0 253 3-288 46-330 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.4 1.4E-14 3E-19 127.6 0.7 251 6-281 2-291 (319)
18 cd00116 LRR_RI Leucine-rich re 99.4 9E-14 1.9E-18 122.4 3.0 256 2-277 23-317 (319)
19 KOG0617 Ras suppressor protein 99.4 7.4E-15 1.6E-19 111.9 -5.3 155 3-201 34-189 (264)
20 PRK15387 E3 ubiquitin-protein 99.3 6.3E-12 1.4E-16 120.1 10.9 203 3-254 223-456 (788)
21 KOG4658 Apoptotic ATPase [Sign 99.3 3.1E-12 6.6E-17 124.6 5.0 107 1-116 544-653 (889)
22 KOG4237 Extracellular matrix p 99.3 1.1E-12 2.4E-17 112.3 0.6 108 5-120 70-179 (498)
23 KOG0617 Ras suppressor protein 99.2 2.9E-13 6.4E-18 103.3 -4.1 109 1-119 55-164 (264)
24 KOG4341 F-box protein containi 99.2 9.6E-13 2.1E-17 113.4 -4.2 262 3-282 139-441 (483)
25 KOG2120 SCF ubiquitin ligase, 99.1 1.1E-12 2.3E-17 108.6 -4.8 63 181-254 310-374 (419)
26 KOG3207 Beta-tubulin folding c 99.1 1E-11 2.3E-16 107.7 0.7 205 2-218 121-337 (505)
27 KOG4341 F-box protein containi 99.1 3.8E-12 8.2E-17 109.8 -2.5 236 26-282 138-416 (483)
28 KOG4237 Extracellular matrix p 99.1 3.6E-12 7.7E-17 109.2 -3.3 223 1-252 90-355 (498)
29 KOG1909 Ran GTPase-activating 99.1 2.2E-11 4.7E-16 102.9 0.6 235 2-253 30-308 (382)
30 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.8E-15 101.0 0.9 186 70-275 142-334 (505)
31 KOG2120 SCF ubiquitin ligase, 98.9 3E-11 6.6E-16 100.1 -4.5 114 149-278 256-374 (419)
32 PF14580 LRR_9: Leucine-rich r 98.8 2.7E-09 5.9E-14 84.2 3.5 134 22-194 15-150 (175)
33 COG4886 Leucine-rich repeat (L 98.8 9.6E-09 2.1E-13 93.2 5.8 191 7-220 98-290 (394)
34 PF14580 LRR_9: Leucine-rich r 98.8 7.2E-09 1.6E-13 81.8 3.9 106 3-119 20-127 (175)
35 KOG1259 Nischarin, modulator o 98.7 1.4E-09 3E-14 90.5 -0.9 221 2-254 182-410 (490)
36 PLN03150 hypothetical protein; 98.6 8.8E-08 1.9E-12 91.5 8.4 105 4-116 420-526 (623)
37 KOG0532 Leucine-rich repeat (L 98.6 1.7E-09 3.6E-14 97.2 -3.8 147 4-166 100-247 (722)
38 PF13855 LRR_8: Leucine rich r 98.6 3.1E-08 6.8E-13 64.3 3.0 58 2-60 1-60 (61)
39 KOG1909 Ran GTPase-activating 98.6 9.8E-09 2.1E-13 87.1 0.2 241 20-280 24-310 (382)
40 COG4886 Leucine-rich repeat (L 98.6 8.3E-08 1.8E-12 87.1 5.7 170 2-195 116-288 (394)
41 PF13855 LRR_8: Leucine rich r 98.5 2.1E-07 4.6E-12 60.3 4.4 60 26-86 1-61 (61)
42 KOG1259 Nischarin, modulator o 98.4 2.6E-08 5.7E-13 83.1 -0.9 130 22-166 280-412 (490)
43 KOG0531 Protein phosphatase 1, 98.4 5.2E-08 1.1E-12 88.9 -0.3 79 3-86 96-174 (414)
44 KOG2982 Uncharacterized conser 98.4 1.1E-07 2.3E-12 79.4 0.8 203 6-223 49-265 (418)
45 KOG0532 Leucine-rich repeat (L 98.4 2.9E-08 6.4E-13 89.4 -2.8 170 25-218 74-245 (722)
46 COG5238 RNA1 Ran GTPase-activa 98.3 9E-08 1.9E-12 78.8 -0.1 240 1-253 29-313 (388)
47 KOG0531 Protein phosphatase 1, 98.3 4.4E-08 9.6E-13 89.3 -3.3 147 3-164 73-219 (414)
48 KOG1947 Leucine rich repeat pr 98.3 9.6E-08 2.1E-12 88.9 -1.5 41 242-282 400-442 (482)
49 PF12799 LRR_4: Leucine Rich r 98.3 9.1E-07 2E-11 52.8 3.3 40 2-42 1-40 (44)
50 PLN03150 hypothetical protein; 98.2 4.5E-06 9.7E-11 79.9 7.9 83 28-118 420-503 (623)
51 PRK15386 type III secretion pr 98.1 2.6E-05 5.7E-10 69.4 9.8 55 24-84 50-104 (426)
52 KOG3665 ZYG-1-like serine/thre 98.0 2.3E-06 5.1E-11 82.0 2.3 107 3-118 123-233 (699)
53 KOG1947 Leucine rich repeat pr 98.0 5.2E-07 1.1E-11 83.9 -2.5 213 47-281 186-415 (482)
54 KOG3665 ZYG-1-like serine/thre 98.0 1.6E-06 3.5E-11 83.1 0.4 83 151-253 146-230 (699)
55 PRK15386 type III secretion pr 97.9 6E-05 1.3E-09 67.2 9.3 70 2-84 52-122 (426)
56 KOG2982 Uncharacterized conser 97.9 3.3E-06 7.1E-11 70.7 1.2 195 2-213 71-285 (418)
57 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 47.5 3.5 36 26-61 1-36 (44)
58 KOG1859 Leucine-rich repeat pr 97.7 5E-07 1.1E-11 83.9 -7.1 108 70-195 183-290 (1096)
59 KOG1859 Leucine-rich repeat pr 97.7 1E-06 2.2E-11 82.0 -6.4 87 20-118 181-267 (1096)
60 KOG4579 Leucine-rich repeat (L 97.6 8.1E-06 1.8E-10 60.6 -1.4 105 4-119 29-137 (177)
61 KOG1644 U2-associated snRNP A' 97.6 0.00015 3.3E-09 57.5 5.4 106 132-253 43-150 (233)
62 KOG2123 Uncharacterized conser 97.4 1.8E-05 4E-10 65.8 -1.9 103 3-111 20-123 (388)
63 COG5238 RNA1 Ran GTPase-activa 97.1 0.00075 1.6E-08 56.2 4.2 242 20-282 24-317 (388)
64 KOG4579 Leucine-rich repeat (L 97.0 0.00017 3.7E-09 53.8 -0.0 81 3-86 54-135 (177)
65 KOG1644 U2-associated snRNP A' 96.9 0.0023 5.1E-08 51.0 5.3 42 149-194 109-150 (233)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00098 2.1E-08 55.2 2.0 90 22-119 39-130 (260)
67 PF00560 LRR_1: Leucine Rich R 96.1 0.0018 3.9E-08 32.1 0.4 20 3-23 1-20 (22)
68 KOG2123 Uncharacterized conser 96.1 0.0011 2.5E-08 55.4 -0.6 78 1-80 40-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.0028 6.1E-08 31.4 0.6 21 27-47 1-21 (22)
70 KOG3864 Uncharacterized conser 95.9 0.0014 3E-08 52.2 -1.1 64 182-256 123-189 (221)
71 KOG2739 Leucine-rich acidic nu 95.8 0.005 1.1E-07 51.1 1.7 68 46-121 40-107 (260)
72 PF13504 LRR_7: Leucine rich r 95.2 0.012 2.7E-07 27.0 1.3 17 2-19 1-17 (17)
73 PF13306 LRR_5: Leucine rich r 94.2 0.13 2.8E-06 38.3 5.5 82 21-113 7-89 (129)
74 KOG3864 Uncharacterized conser 94.2 0.0083 1.8E-07 47.9 -1.1 61 75-142 102-162 (221)
75 PF13306 LRR_5: Leucine rich r 93.4 0.31 6.7E-06 36.2 6.3 99 1-113 11-111 (129)
76 smart00367 LRR_CC Leucine-rich 92.1 0.1 2.2E-06 26.9 1.5 16 266-281 1-16 (26)
77 smart00369 LRR_TYP Leucine-ric 91.0 0.25 5.5E-06 25.3 2.3 18 2-20 2-19 (26)
78 smart00370 LRR Leucine-rich re 91.0 0.25 5.5E-06 25.3 2.3 18 2-20 2-19 (26)
79 smart00369 LRR_TYP Leucine-ric 90.6 0.21 4.6E-06 25.6 1.7 21 25-45 1-21 (26)
80 smart00370 LRR Leucine-rich re 90.6 0.21 4.6E-06 25.6 1.7 21 25-45 1-21 (26)
81 KOG0473 Leucine-rich repeat pr 83.7 0.052 1.1E-06 44.6 -4.6 85 22-116 38-122 (326)
82 smart00364 LRR_BAC Leucine-ric 78.3 1.5 3.2E-05 22.6 1.3 17 3-20 3-19 (26)
83 PF13516 LRR_6: Leucine Rich r 77.2 1.1 2.3E-05 22.4 0.5 13 74-86 2-14 (24)
84 KOG0473 Leucine-rich repeat pr 77.1 0.19 4.2E-06 41.4 -3.4 82 2-86 42-123 (326)
85 smart00368 LRR_RI Leucine rich 67.5 4.9 0.00011 20.9 1.7 14 2-16 2-15 (28)
86 KOG3763 mRNA export factor TAP 63.3 3.4 7.3E-05 38.6 1.0 82 181-273 215-307 (585)
87 smart00365 LRR_SD22 Leucine-ri 63.2 6.8 0.00015 20.1 1.7 11 2-12 2-12 (26)
88 KOG3763 mRNA export factor TAP 59.7 2.1 4.5E-05 39.8 -1.0 91 151-251 216-309 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1e-20 Score=190.93 Aligned_cols=257 Identities=21% Similarity=0.292 Sum_probs=150.7
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCC-cccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNT-RIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
+|+.|+++++ .+..++..+..+++|++|+++++ .++.+|. +..+++|++|++++|.....+|.. +.++++|+.|++
T Consensus 612 ~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeC
Confidence 4555555555 45555555555555555555554 2344443 455555666666555555555555 555566666666
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCC--------
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMD-------- 153 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~-------- 153 (325)
.+|.. ...++..+ .+++|+.|.+.+|.... . .+....+|+.|++++.....+|....++
T Consensus 689 ~~c~~-------L~~Lp~~i-~l~sL~~L~Lsgc~~L~--~---~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 689 SRCEN-------LEILPTGI-NLKSLYRLNLSGCSRLK--S---FPDISTNISWLDLDETAIEEFPSNLRLENLDELILC 755 (1153)
T ss_pred CCCCC-------cCccCCcC-CCCCCCEEeCCCCCCcc--c---cccccCCcCeeecCCCcccccccccccccccccccc
Confidence 55543 12223222 34555555555543211 1 1111234555555544433344322233
Q ss_pred -----------------------CCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccccccCCCC
Q 048462 154 -----------------------HLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLKWIRYAPN 208 (325)
Q Consensus 154 -----------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 208 (325)
+|+.|++++|... ..+|. ..+++|+.|++++|..++.+|....+++
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l---------~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s 826 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL---------VELPSSIQNLHKLEHLEIENCINLETLPTGINLES 826 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCc---------cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence 4444444444332 12232 5677888888888877877776657788
Q ss_pred ccEEEEeccCCchhhcccCCCC--------CCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCC
Q 048462 209 LQFLYVSYCPRLSEIIGTYESP--------GTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSL 280 (325)
Q Consensus 209 L~~L~l~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 280 (325)
|+.|++++|..+..+....... ....+|.++..+++|+.|++.+|+++..++.....+++|+.+++++|..|
T Consensus 827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 8888888887665543211100 23456667788999999999999999988888778899999999999988
Q ss_pred CCCC
Q 048462 281 RKLP 284 (325)
Q Consensus 281 ~~ip 284 (325)
+.++
T Consensus 907 ~~~~ 910 (1153)
T PLN03210 907 TEAS 910 (1153)
T ss_pred cccc
Confidence 8654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=8.7e-21 Score=190.35 Aligned_cols=196 Identities=23% Similarity=0.300 Sum_probs=103.7
Q ss_pred CCCcEEecCCCCCCC-cCchhhhCcccCceecCCCCcc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .+. .+|..++.+++|++|++++|.+ +.+|..+.++++|++|++++|...+.+|.. ++++++|++|
T Consensus 140 ~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEE
Confidence 34555555555 333 4455566666666666666655 355556666666666666666555555555 6666666666
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc-cccCCCCCe
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMDHLET 157 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~~L~~ 157 (325)
++.+|.+ ....+..+..+++|++|++.+|...+.. ........+|+.|+++++... .+|. +..+++|++
T Consensus 218 ~L~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 218 YLGYNNL-------SGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred ECcCCcc-------CCcCChhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 6666655 3445555666666666666665543210 001111224566666544332 2333 555666666
Q ss_pred EEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCc-c-ccccCCCCccEEEEeccC
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD-L-KWIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-l-~~~~~~~~L~~L~l~~~~ 218 (325)
|++++|... +.+|. ..+++|++|+++++ .+.. + ..+..+++|+.|++++|.
T Consensus 289 L~Ls~n~l~---------~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 289 LDLSDNSLS---------GEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EECcCCeec---------cCCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCC
Confidence 666655432 11221 34556666666655 3332 2 124455666666666554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.6e-20 Score=188.46 Aligned_cols=266 Identities=19% Similarity=0.217 Sum_probs=191.7
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+++|++|++++|...+.+|..++++++|++|++++|.+ +.+|..+.++++|++|++++|...+.+|.. ++++++|++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEE
Confidence 47899999999944457799999999999999999987 478999999999999999999888888988 9999999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc-cccCCCCCe
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMDHLET 157 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~~L~~ 157 (325)
++++|.+ ....+..+..+++|+.|++.+|...+.. ........+|+.|+++++... .+|. +..+++|+.
T Consensus 242 ~L~~n~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 242 DLVYNNL-------TGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred ECcCcee-------ccccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 9999987 5677888999999999999988765321 111112245888999866543 4455 778899999
Q ss_pred EEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCC-ccc-cccCCCCccEEEEeccCCchhhccc-------
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMT-DLK-WIRYAPNLQFLYVSYCPRLSEIIGT------- 226 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~-~l~-~~~~~~~L~~L~l~~~~~l~~~~~~------- 226 (325)
|++++|... +..|. ..+++|+.|++++| .+. .++ .++.+++|+.|++++|.....+...
T Consensus 313 L~l~~n~~~---------~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 313 LHLFSNNFT---------GKIPVALTSLPRLQVLQLWSN-KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred EECCCCccC---------CcCChhHhcCCCCCEEECcCC-CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 999888763 22222 45778888888888 444 333 4566778888888777543222110
Q ss_pred ------CCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462 227 ------YESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS 287 (325)
Q Consensus 227 ------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~ 287 (325)
.+. -...++..+..+++|+.|++.+|.-...++.....+++|+.+++++|.--..+|...
T Consensus 383 ~~L~l~~n~-l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 383 FKLILFSNS-LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred CEEECcCCE-ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 000 112334556678888888888875444555556668888888888774333445433
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.1e-21 Score=175.58 Aligned_cols=281 Identities=17% Similarity=0.200 Sum_probs=174.5
Q ss_pred CCCCcEEecCCCCCCC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 1 MHALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
++.||.++++.| .++ .+|+.+..+..|..|+++.|++++.|.++.+.+++-.|++++| .+..+|..++.++..|-.
T Consensus 77 Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhh
Confidence 466788888887 555 6788888888888888888888888888888888888888884 445567665777888888
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccc--cccccCccccCCceEEEEceeee--ecccc-cccCC
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV--NRVKSSPKLQSCIKRLAVVLMAS--FLLPL-DLRMD 153 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~--~~l~~-l~~l~ 153 (325)
|++++|++ +..|..+..+.+|+.|.+++|....+ ..++.+. +|+.|.+++.+. ..+|. +..+.
T Consensus 155 LDLS~NrL--------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt----sL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 155 LDLSNNRL--------EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT----SLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred hccccchh--------hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch----hhhhhhcccccchhhcCCCchhhhh
Confidence 88888876 56677777777777777777765432 2222211 245555553322 13333 44444
Q ss_pred CCCeEEEc-----------------------CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCc
Q 048462 154 HLETLEID-----------------------RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNL 209 (325)
Q Consensus 154 ~L~~L~l~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L 209 (325)
||..++++ +|...+... ......+|+.|+++++ .++.+| .+..++.|
T Consensus 223 NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~--------~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM--------TEGEWENLETLNLSRN-QLTVLPDAVCKLTKL 293 (1255)
T ss_pred hhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec--------cHHHHhhhhhhccccc-hhccchHHHhhhHHH
Confidence 55555544 444332111 1123345555555555 444443 23445555
Q ss_pred cEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCC
Q 048462 210 QFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGS 289 (325)
Q Consensus 210 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~ 289 (325)
+.|.+.+|+. ...++|+.++.+.+|+.+...++ .+.-+|.+.+.|++|+.|.+. |+++-.+|+.+-.
T Consensus 294 ~kLy~n~NkL-----------~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHl 360 (1255)
T KOG0444|consen 294 TKLYANNNKL-----------TFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHL 360 (1255)
T ss_pred HHHHhccCcc-----------cccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccc-ccceeechhhhhh
Confidence 5555554432 55677788888888888888775 777778888788888888884 4566667777654
Q ss_pred cccceeE--EechHHHHhhcccCCccccccc
Q 048462 290 AKNSLNA--IRGSREWWDRLEWEDEDTRNVF 318 (325)
Q Consensus 290 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 318 (325)
+ +.+.. ++.+++....++..+..++.-|
T Consensus 361 L-~~l~vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 361 L-PDLKVLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred c-CCcceeeccCCcCccCCCCcchhhhccee
Confidence 4 33333 3444444444444444444333
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.80 E-value=5.5e-20 Score=177.88 Aligned_cols=308 Identities=31% Similarity=0.455 Sum_probs=217.2
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
||.|++||+++|...+.+|+.++.+.+||||+++++.+..+|.+++++.+|.+|++..+......|.. ...+.+|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEE
Confidence 68999999999988899999999999999999999999999999999999999999987766666654 66699999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccccccCCCCCeEE
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPLDLRMDHLETLE 159 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~l~~l~~L~~L~ 159 (325)
+..... ..+.....++..+++|+.+.+..........+.....+....+.+.+.++... ..+.+..+++|+.|.
T Consensus 649 l~~s~~-----~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 649 LPRSAL-----SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELS 723 (889)
T ss_pred eecccc-----ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEE
Confidence 998652 22455677778888888888866554222333223333223334443332322 344488899999999
Q ss_pred EcCCCCceeccccCCCCCcccc-ccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462 160 IDRCSLESKNDYFGDQGRTRTY-CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES 238 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 238 (325)
+.+|...+....... ..... .|+++..+.+.+|....++.+....|+|++|.+.+|..++++.+........ ...
T Consensus 724 i~~~~~~e~~~~~~~--~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l--~~~ 799 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEE--SLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL--KEL 799 (889)
T ss_pred EEcCCCchhhccccc--ccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc--ccE
Confidence 999998643321111 11112 2667888888899888888888889999999999999998887532211000 011
Q ss_pred cccCCcccEE-eccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcc-c--ceeEEechHHHHhhcccCCccc
Q 048462 239 QDFFSNLMVI-DLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAK-N--SLNAIRGSREWWDRLEWEDEDT 314 (325)
Q Consensus 239 ~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~-~--~l~~~~~~~~~~~~~~~~~~~~ 314 (325)
.-.|.++..+ .+.+.+.+..+-.....++.|+.+.+..||+++.+|....... . ......-+..|.+.++|.++++
T Consensus 800 i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 879 (889)
T KOG4658|consen 800 ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELT 879 (889)
T ss_pred EecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhh
Confidence 2334555555 3555555555555555677799999999999999997755444 1 2334444445688999999998
Q ss_pred cccc
Q 048462 315 RNVF 318 (325)
Q Consensus 315 ~~~~ 318 (325)
+..+
T Consensus 880 ~~~~ 883 (889)
T KOG4658|consen 880 KLRF 883 (889)
T ss_pred hhhc
Confidence 8776
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=1.2e-17 Score=168.97 Aligned_cols=243 Identities=20% Similarity=0.311 Sum_probs=154.7
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+|+.|.+.++ .++.+|..+ ...+|+.|++.++.++.+|.++..+++|+.|+++++.....+|. ++.+++|+.|++.
T Consensus 590 ~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence 4677777777 677777666 46788888888888888888888888888888888777777775 7788888888888
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcc-cccccccCccccCCceEEEEceeeee-cccccccCCCCCeEEE
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVD-AVNRVKSSPKLQSCIKRLAVVLMASF-LLPLDLRMDHLETLEI 160 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~l~~l~~L~~L~l 160 (325)
+|.. ....+..+..+++|+.|++.+|... .++... ...+|+.|++++|... .+|. ...+|+.|++
T Consensus 666 ~c~~-------L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L 732 (1153)
T PLN03210 666 DCSS-------LVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDL 732 (1153)
T ss_pred CCCC-------ccccchhhhccCCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCcccccc--ccCCcCeeec
Confidence 8765 4566777888888888888877432 222211 2345788888876543 2332 2457888888
Q ss_pred cCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc-------cc--ccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462 161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL-------KW--IRYAPNLQFLYVSYCPRLSEIIGTYESPG 231 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-------~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 231 (325)
.++...+.+ .. ..+++|++|++.++. ...+ .. ....++|+.|++++|+.+..++
T Consensus 733 ~~n~i~~lP------~~---~~l~~L~~L~l~~~~-~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------- 795 (1153)
T PLN03210 733 DETAIEEFP------SN---LRLENLDELILCEMK-SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------- 795 (1153)
T ss_pred CCCcccccc------cc---ccccccccccccccc-hhhccccccccchhhhhccccchheeCCCCCCccccC-------
Confidence 877743211 11 234555555555431 1110 00 1123456666666665444332
Q ss_pred CCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCC
Q 048462 232 TSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPL 285 (325)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~ 285 (325)
..++.+++|+.|++.+|..+..+|... .+++|+.|++++|..++.+|.
T Consensus 796 -----~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 796 -----SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred -----hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 355666666777776666666665543 456666666666666665554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=7.7e-18 Score=149.91 Aligned_cols=250 Identities=17% Similarity=0.146 Sum_probs=181.6
Q ss_pred CcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 4 LAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 4 L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
-+.||+++| .+..+ +..|-++++|+.+++..|.++.+|....-..+|+.|++.+|.+......+ ++.++.|+.||++
T Consensus 80 t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLS 157 (873)
T ss_pred eeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhh
Confidence 467999999 77766 67788999999999999999999998778888999999996555544455 8999999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEE
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEI 160 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l 160 (325)
.|.+ +..-...+..-.++++|++++|.++.+..... .++ .+|-.|.++..+...+|. +..+++|+.|++
T Consensus 158 rN~i-------s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 158 RNLI-------SEIPKPSFPAKVNIKKLNLASNRITTLETGHF-DSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hchh-------hcccCCCCCCCCCceEEeeccccccccccccc-ccc-chheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 9987 33334455566789999999999887643321 122 258888999877777777 888999999999
Q ss_pred cCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462 161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES 238 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 238 (325)
..|..-... +.-...+++|+.|.+..+ ++..+. .+..+.++++|+|+.|. ++.+.. .+
T Consensus 229 nrN~irive-------~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~-----------g~ 288 (873)
T KOG4194|consen 229 NRNRIRIVE-------GLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNR-LQAVNE-----------GW 288 (873)
T ss_pred cccceeeeh-------hhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccch-hhhhhc-----------cc
Confidence 998864221 111145778888888877 566553 34457788888888775 333332 26
Q ss_pred cccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462 239 QDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCPSLRKLPLN 286 (325)
Q Consensus 239 ~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~ip~~ 286 (325)
+-++.+|+.|+++.+ .+..+ +....-+++|+.|+++.+ +|++++++
T Consensus 289 lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~ 335 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEG 335 (873)
T ss_pred ccccchhhhhccchh-hhheeecchhhhcccceeEecccc-ccccCChh
Confidence 667788888888876 33333 222333678888888765 77777654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=8.4e-19 Score=155.95 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=111.2
Q ss_pred CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
.||+||||.| .+..+| ..+..=.+|++|++++|.++.+-. .+..+.+|.+|.++.|.+ +.+|..+|+++++|+.|+
T Consensus 150 alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 150 ALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhh
Confidence 4455555555 444443 223333455555555555543322 234455555666665333 334433366666666666
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee--cccccccCCCCCeE
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF--LLPLDLRMDHLETL 158 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~l~~l~~L~~L 158 (325)
+..|.+ ...-...+..++.|+.|.+..|.+....+.+. --+..+++|++...+.. .-.++-++..|+.|
T Consensus 228 LnrN~i-------rive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 228 LNRNRI-------RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred ccccce-------eeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhhhhhcccccccchhhhh
Confidence 666665 11112334444444444444444333222110 00112344444422111 11113344444555
Q ss_pred EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--------------------------cccCCCCccEE
Q 048462 159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--------------------------WIRYAPNLQFL 212 (325)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--------------------------~~~~~~~L~~L 212 (325)
++++|....+.. ++| ..+++|+.|+++++ .++.++ .+..+++|+.|
T Consensus 299 ~lS~NaI~rih~----d~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 299 DLSYNAIQRIHI----DSW---SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ccchhhhheeec----chh---hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 554444321111 122 12344555555444 444432 22334555666
Q ss_pred EEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC-cccCCCccEEeeeCC
Q 048462 213 YVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VVPFPSLQTISVNGC 277 (325)
Q Consensus 213 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c 277 (325)
+|++|..--.+ ++....+..+++|+.|++.|+ +++.++-. ...++.|+.|++.++
T Consensus 371 dLr~N~ls~~I---------EDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 371 DLRSNELSWCI---------EDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cCcCCeEEEEE---------ecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 65555421111 111224455777777777775 66666543 223677777777655
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=2.1e-19 Score=153.24 Aligned_cols=250 Identities=24% Similarity=0.273 Sum_probs=205.2
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
.++.++++.| .+..+.+.+.++..|.+++++.+++.++|++++.+..++.+++++ +....+|.+ +..+.+|.+++.+
T Consensus 46 ~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~-i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQ-IGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHH-Hhhhhhhhhhhcc
Confidence 3677889999 788888889999999999999999999999999999999999999 556678888 9999999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEc
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEID 161 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~ 161 (325)
.+.. ...+.+++.+..|+.++..+|++.+.++-... +..+..+++.+.....+|. .-.++.|++++..
T Consensus 123 ~n~~--------~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~---~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 123 SNEL--------KELPDSIGRLLDLEDLDATNNQISSLPEDMVN---LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred ccce--------eecCchHHHHhhhhhhhccccccccCchHHHH---HHHHHHhhccccchhhCCHHHHHHHHHHhcccc
Confidence 9887 57788888899999999998887776543321 2235667777666666666 4458999999988
Q ss_pred CCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCcccccc
Q 048462 162 RCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQ 239 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (325)
.|.. +.+|. +.+.+|+.|++.++ ++..+|.+..+..|+.+++..+. ++.+.. +..
T Consensus 192 ~N~L----------~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpa-----------e~~ 248 (565)
T KOG0472|consen 192 SNLL----------ETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPA-----------EHL 248 (565)
T ss_pred hhhh----------hcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHH-----------HHh
Confidence 7774 34444 77899999999999 89999999999999999998875 333332 234
Q ss_pred ccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcc
Q 048462 240 DFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAK 291 (325)
Q Consensus 240 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~ 291 (325)
.+++++..||++.+ +++++|++.+-+.+|++||++++ .|+.+|..++.+.
T Consensus 249 ~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlh 298 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLH 298 (565)
T ss_pred cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCCcccccce
Confidence 58999999999996 99999999999999999999876 9999999988774
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=3.4e-18 Score=153.45 Aligned_cols=111 Identities=16% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCcEEecCCCCCCC-cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+|.+|-+|+++|...+ ..|..+..|..++.|.+..+++..+|..++.+.+|++|.+++|+... +..+ ++.++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGE-Ls~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGE-LSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhh-hccchhhHHH
Confidence 3566778888883332 56888888888888888888888888888888888888777754433 2333 5566666666
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
.+..|.+ +...+|..+..+..|..|+++.|+...
T Consensus 84 ~~R~N~L------KnsGiP~diF~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 84 IVRDNNL------KNSGIPTDIFRLKDLTILDLSHNQLRE 117 (1255)
T ss_pred hhhcccc------ccCCCCchhcccccceeeecchhhhhh
Confidence 6666554 244455555556666666665555443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=6e-17 Score=138.37 Aligned_cols=237 Identities=22% Similarity=0.252 Sum_probs=172.9
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
..|.+|++.++ ....+|++++.+..+..++.+.+++.++|+.++.+.+|.+++.+++.. ..++.. ++.+..|+.++.
T Consensus 68 ~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~-i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL-KELPDS-IGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-eecCch-HHHHhhhhhhhc
Confidence 45788999999 788999999999999999999999999999999999999999999554 455666 899999999999
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEE
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEI 160 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l 160 (325)
.+|.+ ...+.++..+.+|..+.+.++.....+.-... ++.|++++....--..+|. ++.+.+|..|++
T Consensus 145 ~~N~i--------~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~---m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 145 TNNQI--------SSLPEDMVNLSKLSKLDLEGNKLKALPENHIA---MKRLKHLDCNSNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred ccccc--------ccCchHHHHHHHHHHhhccccchhhCCHHHHH---HHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence 99887 56788888888888888888876655433222 2346777665433446666 888888888888
Q ss_pred cCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462 161 DRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE 237 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 237 (325)
+.|... ++|. ..|+.|.++++..+ .++-++. ..+++++..|++.+++ ++++ |.
T Consensus 214 ~~Nki~----------~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk-lke~------------Pd 269 (565)
T KOG0472|consen 214 RRNKIR----------FLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK-LKEV------------PD 269 (565)
T ss_pred hhcccc----------cCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-cccC------------ch
Confidence 888754 2333 45667777777666 5555442 3357777777777775 3333 33
Q ss_pred ccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462 238 SQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP 278 (325)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 278 (325)
.+.-+.+|+.||++++ .++.++...+.+ .|+.|.+.|+|
T Consensus 270 e~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 5566677777777775 667777776666 67777766653
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=4.4e-16 Score=145.35 Aligned_cols=82 Identities=34% Similarity=0.423 Sum_probs=63.2
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
.+|++++++.+ .+..+|+.++.|.+|+.++...|.+.++|..+..+.+|+.|.+..| ....+|.. ....+.|++|++
T Consensus 241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeee
Confidence 35778888888 7778887788888888888888888888888888888888888774 45566665 666888888888
Q ss_pred cccce
Q 048462 82 FSTEL 86 (325)
Q Consensus 82 ~~~~~ 86 (325)
..|.+
T Consensus 318 ~~N~L 322 (1081)
T KOG0618|consen 318 QSNNL 322 (1081)
T ss_pred hhccc
Confidence 88776
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=4.2e-14 Score=135.31 Aligned_cols=229 Identities=19% Similarity=0.243 Sum_probs=133.9
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+...|+++++ .++.+|..+. .+|+.|++++|+++.+|..+. .+|++|++++|. ...+|.. +. .+|+.|+++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~-l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT-LP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChh-hh--ccccEEECc
Confidence 4567777777 6777776553 467788888887777776553 478888887754 3456654 32 367778888
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR 162 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~ 162 (325)
+|.+ ..++..+. .+|+.|++++|....++.. .+.+|+.|+++++....+|.- ..++|+.|++++
T Consensus 250 ~N~L--------~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-----l~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~ 313 (754)
T PRK15370 250 INRI--------TELPERLP--SALQSLDLFHNKISCLPEN-----LPEELRYLSVYDNSIRTLPAH-LPSGITHLNVQS 313 (754)
T ss_pred CCcc--------CcCChhHh--CCCCEEECcCCccCccccc-----cCCCCcEEECCCCccccCccc-chhhHHHHHhcC
Confidence 7776 23444443 4677777777766554331 223577777776554444431 123566777776
Q ss_pred CCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccC
Q 048462 163 CSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFF 242 (325)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (325)
|... .+|....++|+.|++++| .++.++.. -.++|+.|++++|. +..+.. .+ .
T Consensus 314 N~Lt----------~LP~~l~~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~------------~l--p 366 (754)
T PRK15370 314 NSLT----------ALPETLPPGLKTLEAGEN-ALTSLPAS-LPPELQVLDVSKNQ-ITVLPE------------TL--P 366 (754)
T ss_pred Cccc----------cCCccccccceeccccCC-ccccCChh-hcCcccEEECCCCC-CCcCCh------------hh--c
Confidence 6643 122222356777777776 56655431 13567777777764 222211 11 2
Q ss_pred CcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462 243 SNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS 287 (325)
Q Consensus 243 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~ 287 (325)
++|+.|++.+| .+..+|.... ..|+.|++++| +++.+|..+
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl 407 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPESL 407 (754)
T ss_pred CCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchhH
Confidence 46777777765 4555554322 35666666665 566666543
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=5e-14 Score=134.81 Aligned_cols=224 Identities=22% Similarity=0.235 Sum_probs=160.4
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++|+.|++++| .++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+. .+|.. +. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~-l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPER-LP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChh-Hh--CCCCEEEC
Confidence 46899999999 8999987765 589999999999999987654 47999999997654 67765 53 58999999
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID 161 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~ 161 (325)
++|.+ ..++..+. ++|+.|++++|....++.. ++..|+.|+++++....+|.. ..++|+.|+++
T Consensus 270 s~N~L--------~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-----lp~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls 333 (754)
T PRK15370 270 FHNKI--------SCLPENLP--EELRYLSVYDNSIRTLPAH-----LPSGITHLNVQSNSLTALPET-LPPGLKTLEAG 333 (754)
T ss_pred cCCcc--------CccccccC--CCCcEEECCCCccccCccc-----chhhHHHHHhcCCccccCCcc-ccccceecccc
Confidence 99887 24454443 5899999999987765432 223578888887655555541 23689999999
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCcccccccc
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF 241 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 241 (325)
+|.... +|....++|+.|++++| +++.++.. -.++|++|++++|. +..++. .+
T Consensus 334 ~N~Lt~----------LP~~l~~sL~~L~Ls~N-~L~~LP~~-lp~~L~~LdLs~N~-Lt~LP~------------~l-- 386 (754)
T PRK15370 334 ENALTS----------LPASLPPELQVLDVSKN-QITVLPET-LPPTITTLDVSRNA-LTNLPE------------NL-- 386 (754)
T ss_pred CCcccc----------CChhhcCcccEEECCCC-CCCcCChh-hcCCcCEEECCCCc-CCCCCH------------hH--
Confidence 887542 22223468999999998 67766532 24689999999985 333322 22
Q ss_pred CCcccEEeccCCCCcceeccCcc----cCCCccEEeeeCCC
Q 048462 242 FSNLMVIDLRHLPSLTSICCGVV----PFPSLQTISVNGCP 278 (325)
Q Consensus 242 ~~~L~~L~l~~~~~l~~~~~~~~----~~~~L~~L~l~~c~ 278 (325)
..+|+.|++.+| ++..+|.... .++.+..+++.+++
T Consensus 387 ~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 136888888886 5666655332 24778888887764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.5e-13 Score=131.10 Aligned_cols=232 Identities=21% Similarity=0.230 Sum_probs=120.0
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
-..|+++++ .++.+|+.+. .+|+.|++.+|+++.+|.. .++|++|++++|.+ ..+|.. .++|+.|++..
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~L-tsLP~l----p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-TSLPVL----PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCcc-CcccCc----ccccceeeccC
Confidence 346778887 7777777665 3677777777777777653 46777777777533 344432 23555555555
Q ss_pred cceeee----------eec--cCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccccccc
Q 048462 84 TELVEL----------HYV--DSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLR 151 (325)
Q Consensus 84 ~~~~~~----------~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~ 151 (325)
|.+... +.. .-..++. ..++|+.|++++|....++.+ +..|+.|+++++....+|.+
T Consensus 272 N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~~LP~l-- 340 (788)
T PRK15387 272 NPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLTSLPTL-- 340 (788)
T ss_pred CchhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCCC------cccccccccccCcccccccc--
Confidence 544100 000 0011111 124567777766665544322 12345555554443334431
Q ss_pred CCCCCeEEEcCCCCceecccc----------CCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCch
Q 048462 152 MDHLETLEIDRCSLESKNDYF----------GDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLS 221 (325)
Q Consensus 152 l~~L~~L~l~~~~~~~~~~~~----------~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~ 221 (325)
..+|+.|++++|....+.... .....+| ....+|+.|+++++ .++.++.. .++|+.|++++|. +.
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP-~l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-Ls 415 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LT 415 (788)
T ss_pred ccccceEecCCCccCCCCCCCcccceehhhccccccCc-ccccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CC
Confidence 136677777766643211000 0000111 11234555555555 44444432 2456666666554 22
Q ss_pred hhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462 222 EIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP 278 (325)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 278 (325)
.++ . .+.+|+.|++.++ +++.+|.....+++|+.|++++++
T Consensus 416 sIP------------~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 416 SLP------------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCC------------c---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 221 1 1235667777775 566777666677888888887763
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=5.1e-15 Score=138.38 Aligned_cols=253 Identities=21% Similarity=0.195 Sum_probs=152.6
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+|++||+++| .+...|..+..+.+|+.|+++.|.+..+|....++.+|+++.+.. +....+|.. +.++++|+.|+++
T Consensus 46 ~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~-~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPAS-ISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchh-HHhhhcccccccc
Confidence 4899999999 899999999999999999999999999999999999999999988 778889988 9999999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEec-------------------CcccccccccCccccCCce-EEEEceee
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLC-------------------NVDAVNRVKSSPKLQSCIK-RLAVVLMA 142 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~~L~-~L~l~~~~ 142 (325)
.|.. ..++.-+..+..++.+..++| ....- +.... .+++ .|++....
T Consensus 123 ~N~f--------~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~--~~~~i---~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 123 FNHF--------GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGS--FLIDI---YNLTHQLDLRYNE 189 (1081)
T ss_pred hhcc--------CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccc--hhcch---hhhheeeecccch
Confidence 9987 334444444444444444433 11100 00000 0112 24444322
Q ss_pred eecccccccCCCCCeEEEcCCCCceecccc----------CC-CCCccccccccccEEEecCCCCCCccc-cccCCCCcc
Q 048462 143 SFLLPLDLRMDHLETLEIDRCSLESKNDYF----------GD-QGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQ 210 (325)
Q Consensus 143 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~ 210 (325)
.. ...+..+++|+.+....+......+.. .. ....+.....+|+++++++. ++..++ |+..+++|+
T Consensus 190 ~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 190 ME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEWIGACANLE 267 (1081)
T ss_pred hh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcchHHHHhcccce
Confidence 22 222333444444444333322111000 00 00011122345666666655 444443 455566666
Q ss_pred EEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCC
Q 048462 211 FLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSG 288 (325)
Q Consensus 211 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~ 288 (325)
.|++.+|.. ..+. ..+....+|+.|++..| ++..++.....+.+|++|++..+ +|..+|+.+.
T Consensus 268 ~l~~n~N~l-~~lp------------~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l 330 (1081)
T KOG0618|consen 268 ALNANHNRL-VALP------------LRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFL 330 (1081)
T ss_pred EecccchhH-HhhH------------HHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHH
Confidence 666665542 2222 24445556666666665 66666666666788888888654 7777777443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=1.4e-14 Score=127.56 Aligned_cols=251 Identities=16% Similarity=0.118 Sum_probs=142.1
Q ss_pred EEecCCCCCCC--cCchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCC------eeechhhhhC
Q 048462 6 VLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYL------AFVPCQVISS 72 (325)
Q Consensus 6 ~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~~ 72 (325)
.|+|.++ .++ .....+..+.+|+.|+++++.++ .++..+...++|++++++++... ..++.. +..
T Consensus 2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~-l~~ 79 (319)
T cd00116 2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG-LTK 79 (319)
T ss_pred ccccccC-cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH-HHh
Confidence 3556665 443 33555666777888888888762 35555667777888888775544 122334 666
Q ss_pred CCcccEEEecccceeeeeeccCccchhhhccC---CCcceEEEEecCcccc--ccccc-CccccCCceEEEEceeeee--
Q 048462 73 LSSLQVFSWFSTELVELHYVDSTSVLAELESL---ENIHDISVTLCNVDAV--NRVKS-SPKLQSCIKRLAVVLMASF-- 144 (325)
Q Consensus 73 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~--~~~~~-~~~~~~~L~~L~l~~~~~~-- 144 (325)
+++|+.|++.+|.+ .......+..+ ++|++|++.+|..... ..+.. ......+|+.|+++++...
T Consensus 80 ~~~L~~L~l~~~~~-------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 80 GCGLQELDLSDNAL-------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred cCceeEEEccCCCC-------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 77888888888776 32333333333 3488888887765421 11111 1111245788888765433
Q ss_pred ---cccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCcc------ccccCCCCccEE
Q 048462 145 ---LLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDL------KWIRYAPNLQFL 212 (325)
Q Consensus 145 ---~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l------~~~~~~~~L~~L 212 (325)
.+.. +..+++|++|++++|...+... ..++. ..+++|++|++++| .+++. ..+..+++|++|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGI-----RALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHH-----HHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEE
Confidence 1222 5566788888888876531110 01111 23468888888888 55532 234467788888
Q ss_pred EEeccCCchhhcccCCCCCCCccccc-cccCCcccEEeccCCCCcc-----eeccCcccCCCccEEeeeCCCCCC
Q 048462 213 YVSYCPRLSEIIGTYESPGTSEIEES-QDFFSNLMVIDLRHLPSLT-----SICCGVVPFPSLQTISVNGCPSLR 281 (325)
Q Consensus 213 ~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~l~~c~~l~ 281 (325)
++++|.. .+.... .+... ....+.|++|++.+| .++ .+......+++|+.++++++ .++
T Consensus 227 ~ls~n~l-~~~~~~-------~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~ 291 (319)
T cd00116 227 NLGDNNL-TDAGAA-------ALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFG 291 (319)
T ss_pred ecCCCcC-chHHHH-------HHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCc
Confidence 8888763 221110 00000 012467888888887 332 12222334578888888776 444
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=9e-14 Score=122.36 Aligned_cols=256 Identities=18% Similarity=0.111 Sum_probs=164.8
Q ss_pred CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCcccc-------cChhhhccccCceeeccCCCCCeeechhh
Q 048462 2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIGQ-------LPTGITYLKNLKILRLDGMRYLAFVPCQV 69 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~-------lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 69 (325)
+.|+.|++++| .++ .++..+...+.|++++++++.+.. ++..+.++++|+.|++++|.+....+..
T Consensus 23 ~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~- 100 (319)
T cd00116 23 LCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV- 100 (319)
T ss_pred hhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-
Confidence 45889999999 663 356667778889999999886542 3445677889999999998876555544
Q ss_pred hhCCCc---ccEEEecccceeeeeeccCccchhhhccC-CCcceEEEEecCcccc--cccccCccccCCceEEEEceeee
Q 048462 70 ISSLSS---LQVFSWFSTELVELHYVDSTSVLAELESL-ENIHDISVTLCNVDAV--NRVKSSPKLQSCIKRLAVVLMAS 143 (325)
Q Consensus 70 ~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~ 143 (325)
+..+.+ |++|++++|.... .........+..+ ++|+.|++++|..... ..+.........|++|+++++..
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGD---RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHhccCcccEEEeeCCccch---HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 555554 9999999998700 0001233456667 8999999999986631 22222222234689999986543
Q ss_pred e--c---ccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCcc--cccc-----CCCC
Q 048462 144 F--L---LPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDL--KWIR-----YAPN 208 (325)
Q Consensus 144 ~--~---l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l--~~~~-----~~~~ 208 (325)
. . ++. +..+++|++|++++|...+... ..+.. ..+++|++|++++| .+++. ..+. ..+.
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNIS 251 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCC
Confidence 3 1 222 4556799999999997642111 11111 45789999999998 67652 1111 2479
Q ss_pred ccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee-----ccCcccC-CCccEEeeeCC
Q 048462 209 LQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-----CCGVVPF-PSLQTISVNGC 277 (325)
Q Consensus 209 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~-~~L~~L~l~~c 277 (325)
|++|++.+|....... ..+......+++|++++++++ .+.+. ......+ +.|++++|.+.
T Consensus 252 L~~L~l~~n~i~~~~~--------~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 252 LLTLSLSCNDITDDGA--------KDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ceEEEccCCCCCcHHH--------HHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 9999999996431111 011234556689999999997 44322 2122234 67888887654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=7.4e-15 Score=111.92 Aligned_cols=155 Identities=27% Similarity=0.359 Sum_probs=97.7
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+...|.+++| .++.+|+.++.+++|+.|++.+|+++++|..++.+++|++|++.- +....+|.+ ++.++.|+.||+.
T Consensus 34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprg-fgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRG-FGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccc-cCCCchhhhhhcc
Confidence 4455666777 666667777777777777777777777777777777777777765 344456666 7777777777777
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEc
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEID 161 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~ 161 (325)
++.+ .+...+..+..++.|+.|.++.+... .+|. ++.+.+|+.|.+.
T Consensus 111 ynnl------~e~~lpgnff~m~tlralyl~dndfe--------------------------~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 111 YNNL------NENSLPGNFFYMTTLRALYLGDNDFE--------------------------ILPPDVGKLTNLQILSLR 158 (264)
T ss_pred cccc------ccccCCcchhHHHHHHHHHhcCCCcc--------------------------cCChhhhhhcceeEEeec
Confidence 7665 13344555666666666666555433 3333 6677777777777
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK 201 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 201 (325)
+|+.++...+ + +.+..|++|.+.++ .++.++
T Consensus 159 dndll~lpke------i--g~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 159 DNDLLSLPKE------I--GDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred cCchhhCcHH------H--HHHHHHHHHhcccc-eeeecC
Confidence 7775422110 0 45667777777777 565543
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=6.3e-12 Score=120.14 Aligned_cols=203 Identities=23% Similarity=0.216 Sum_probs=117.0
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhc-----------------cccCceeeccCCCCCeee
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITY-----------------LKNLKILRLDGMRYLAFV 65 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~-----------------l~~L~~L~l~~~~~~~~~ 65 (325)
+|+.|++.+| .++.+|.. .++|++|++++|+++.+|....+ ..+|+.|++++|. ...+
T Consensus 223 ~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~-Lt~L 297 (788)
T PRK15387 223 HITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ-LTSL 297 (788)
T ss_pred CCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCc-cccc
Confidence 4566666666 56666542 35666666666666555532110 1233344444432 2223
Q ss_pred chhhhhCCCcccEEEecccceeeeeeccCccchhh-------------hccC-CCcceEEEEecCcccccccccCccccC
Q 048462 66 PCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAE-------------LESL-ENIHDISVTLCNVDAVNRVKSSPKLQS 131 (325)
Q Consensus 66 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~ 131 (325)
|. ..++|+.|++++|.+... ...+.. +..+ .+|+.|++++|.+..++.. ..
T Consensus 298 P~----~p~~L~~LdLS~N~L~~L-----p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l------p~ 362 (788)
T PRK15387 298 PV----LPPGLQELSVSDNQLASL-----PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL------PS 362 (788)
T ss_pred cc----cccccceeECCCCccccC-----CCCcccccccccccCccccccccccccceEecCCCccCCCCCC------Cc
Confidence 32 135678888887766110 001100 1111 2566666666665544322 23
Q ss_pred CceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccE
Q 048462 132 CIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQF 211 (325)
Q Consensus 132 ~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~ 211 (325)
+|+.|++++.....+|.+ ..+|+.|++++|... .+| ...++|+.|+++++ .++.++.. ..+|+.
T Consensus 363 ~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt----------~LP-~l~s~L~~LdLS~N-~LssIP~l--~~~L~~ 426 (788)
T PRK15387 363 ELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT----------SLP-VLPSELKELMVSGN-RLTSLPML--PSGLLS 426 (788)
T ss_pred ccceehhhccccccCccc--ccccceEEecCCccc----------CCC-CcccCCCEEEccCC-cCCCCCcc--hhhhhh
Confidence 466666665444445542 357888888888753 222 12468999999999 78877653 457889
Q ss_pred EEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462 212 LYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 212 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (325)
|++++|. ++.+ |..+..+++|+.|++++++
T Consensus 427 L~Ls~Nq-Lt~L------------P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 427 LSVYRNQ-LTRL------------PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhccCc-cccc------------ChHHhhccCCCeEECCCCC
Confidence 9999886 3333 3477889999999999984
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=3.1e-12 Score=124.58 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=80.6
Q ss_pred CCCCcEEecCCCCC-CCcCc-hhhhCcccCceecCCCC-cccccChhhhccccCceeeccCCCCCeeechhhhhCCCccc
Q 048462 1 MHALAVLDLSYNLD-LVKLP-EAIGKLINLCYLNLSNT-RIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ 77 (325)
Q Consensus 1 ~~~L~~L~l~~~~~-~~~lp-~~~~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 77 (325)
++.|++|-+.++.. +..++ +.|..++.|++||+++| .+.++|..++.+.+||+|++++ +.+..+|.+ ++++++|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~-l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSG-LGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchH-HHHHHhhh
Confidence 35677777777732 45554 44777899999999987 6788999999999999999988 556688888 88999999
Q ss_pred EEEecccceeeeeeccCccchhhhccCCCcceEEEEecC
Q 048462 78 VFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCN 116 (325)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 116 (325)
+|++..+.. ....+.....+++|+.|.+....
T Consensus 622 ~Lnl~~~~~-------l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGR-------LESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccc-------cccccchhhhcccccEEEeeccc
Confidence 998888765 23334455568888888887664
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=1.1e-12 Score=112.30 Aligned_cols=108 Identities=23% Similarity=0.278 Sum_probs=91.0
Q ss_pred cEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 5 AVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
..+.|..| .|+.+| .+|+.+++||.|+++.|.|..+ |.++..+.+|..|-+.+++.++.+|..+++++..|+.|.+.
T Consensus 70 veirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 45778888 899996 6688999999999999999755 67789999999999988888999998889999999999998
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccc
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV 120 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 120 (325)
-+.+ ...-...+..+++|..|.+..+.+..+
T Consensus 149 an~i-------~Cir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 149 ANHI-------NCIRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred hhhh-------cchhHHHHHHhhhcchhcccchhhhhh
Confidence 8887 555666788889998888888865543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=2.9e-13 Score=103.28 Aligned_cols=109 Identities=23% Similarity=0.343 Sum_probs=96.5
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCe-eechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLA-FVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L 79 (325)
+.+|++|++++| .++++|..++.+++|+.|+++-|++..+|.+++.++-|+.||+.+|+... .+|.. +..+..|+-|
T Consensus 55 l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn-ff~m~tlral 132 (264)
T KOG0617|consen 55 LKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRAL 132 (264)
T ss_pred hhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc-hhHHHHHHHH
Confidence 367899999999 89999999999999999999999999999999999999999999987665 56665 8888999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
++..+.. +..+.+++++++|+.|.+..+....
T Consensus 133 yl~dndf--------e~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 133 YLGDNDF--------EILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred HhcCCCc--------ccCChhhhhhcceeEEeeccCchhh
Confidence 9999887 6788999999999999988876544
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=9.6e-13 Score=113.42 Aligned_cols=262 Identities=18% Similarity=0.187 Sum_probs=139.5
Q ss_pred CCcEEecCCCCCCC--cCchhhhCcccCceecCCCC-ccc--ccChhhhccccCceeeccCCCCCeeec-hhhhhCCCcc
Q 048462 3 ALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNT-RIG--QLPTGITYLKNLKILRLDGMRYLAFVP-CQVISSLSSL 76 (325)
Q Consensus 3 ~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~-~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L 76 (325)
.|+.|.++||..+. .+-.....|++++.|.+.+| +++ .+-..-.+|.+|+++++..|...+... ......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46788888884444 33455667888888888888 453 222223568888888888876555443 2224458888
Q ss_pred cEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCc--------------------------ccc
Q 048462 77 QVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSP--------------------------KLQ 130 (325)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------~~~ 130 (325)
++|.+++|.-+. ....-.....++.++.+...+|.....+.+..+. ..+
T Consensus 219 ~~lNlSwc~qi~-----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQIS-----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHhhhccCchhh-----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 888888886521 1111122233444555544455443333333222 223
Q ss_pred CCceEEEEceeeeeccc---c-cccCCCCCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCcc---cc
Q 048462 131 SCIKRLAVVLMASFLLP---L-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDL---KW 202 (325)
Q Consensus 131 ~~L~~L~l~~~~~~~l~---~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l---~~ 202 (325)
..++.++.++++.+... + .++.++|+.+.+++|..... .++... .+++.|+.+++.+|....+- ..
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd------~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD------RGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh------hhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 33444444444333221 1 23456666666666654210 111111 45566666666666433332 12
Q ss_pred ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC-cccCCCccEEeeeCCCCCC
Q 048462 203 IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VVPFPSLQTISVNGCPSLR 281 (325)
Q Consensus 203 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~ 281 (325)
..+++.|+.|.+++|..+++.+... +.........|+.+.+.+|+.+.+.... ...++.|+.+++.+|..++
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~-------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRH-------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhh-------hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 2346667777777776665542211 1123344566667777777665543221 2346677777777776665
Q ss_pred C
Q 048462 282 K 282 (325)
Q Consensus 282 ~ 282 (325)
+
T Consensus 441 k 441 (483)
T KOG4341|consen 441 K 441 (483)
T ss_pred h
Confidence 3
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-12 Score=108.57 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=43.0
Q ss_pred cccccccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462 181 YCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (325)
..+|+|.+|++++|..++. +..+.+++.|++|.++.|+.+..-.. -.+...|.|.+|++.||-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~-----------~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL-----------LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe-----------eeeccCcceEEEEecccc
Confidence 5677888888888766655 33455678888888888875533221 245667888888888873
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-11 Score=107.68 Aligned_cols=205 Identities=17% Similarity=0.127 Sum_probs=133.9
Q ss_pred CCCcEEecCCCCCCCcCc--hhhhCcccCceecCCCCcc---cccChhhhccccCceeeccCCCCCeeechhhhhCCCcc
Q 048462 2 HALAVLDLSYNLDLVKLP--EAIGKLINLCYLNLSNTRI---GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSL 76 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~l---~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 76 (325)
++|+...|.++ .+...+ .....|++++.|+++.|=+ ..+-.....+|+|+.|+++.|..........-..++.|
T Consensus 121 kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 56788888888 676665 3677788999999988844 34444467789999999988755443333212346788
Q ss_pred cEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc---cccCC
Q 048462 77 QVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL---DLRMD 153 (325)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~---l~~l~ 153 (325)
+.|.++.|++ .+.....-+..+|+|+.|.+..|......... ......|+.|+|++.....++. ++.+|
T Consensus 200 K~L~l~~CGl------s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 200 KQLVLNSCGL------SWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred heEEeccCCC------CHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccccccc
Confidence 8889999887 13333444556788999999888533322221 1223458888888766665553 77888
Q ss_pred CCCeEEEcCCCCceeccccCCCCCcc-ccccccccEEEecCCCCCCccc---cccCCCCccEEEEeccC
Q 048462 154 HLETLEIDRCSLESKNDYFGDQGRTR-TYCFRNLRHLSVKTCPCMTDLK---WIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~~~ 218 (325)
.|+.|+++.++..++...-.+ ... ...+++|++|++..+ .+.+++ .+..+++|++|.+..++
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~--s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVE--SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred chhhhhccccCcchhcCCCcc--chhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 888888888886543321110 000 156788999988888 454444 44556777777765554
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.12 E-value=3.8e-12 Score=109.80 Aligned_cols=236 Identities=17% Similarity=0.197 Sum_probs=139.9
Q ss_pred ccCceecCCCCc-c--cccChhhhccccCceeeccCCCCCeeech-hhhhCCCcccEEEecccceeeeeeccCccchhh-
Q 048462 26 INLCYLNLSNTR-I--GQLPTGITYLKNLKILRLDGMRYLAFVPC-QVISSLSSLQVFSWFSTELVELHYVDSTSVLAE- 100 (325)
Q Consensus 26 ~~L~~L~l~~~~-l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~- 100 (325)
-.|+.|.++++. . ..+-....+++++++|++.+|..++.-.. ..-..+++|++|++..|..+ +....+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i------T~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI------TDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh------HHHHHHHH
Confidence 368999999983 3 35555678899999999999986664332 21345999999999997641 4444443
Q ss_pred hccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccccc----ccCCCCCeEEEcCCCCceeccccCCCC
Q 048462 101 LESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLD----LRMDHLETLEIDRCSLESKNDYFGDQG 176 (325)
Q Consensus 101 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~ 176 (325)
...+++|..++++++....-.++.....-++.++++...||....+..+ ++++-+.++++..|..+... ..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-----~~ 286 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-----DL 286 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-----HH
Confidence 3578999999999997544333222222223355555556655544442 23344556665555433110 01
Q ss_pred Cccc--------------------------cccccccEEEecCCCCCCccc--c-ccCCCCccEEEEeccCCchhhcccC
Q 048462 177 RTRT--------------------------YCFRNLRHLSVKTCPCMTDLK--W-IRYAPNLQFLYVSYCPRLSEIIGTY 227 (325)
Q Consensus 177 ~~~~--------------------------~~~~~L~~L~l~~~~~l~~l~--~-~~~~~~L~~L~l~~~~~l~~~~~~~ 227 (325)
|... ...++|+.+-++.|.++++.. . -..++.|+.+++..|..+.+.
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~---- 362 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG---- 362 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----
Confidence 1111 233455555555554444421 1 123445555555554433222
Q ss_pred CCCCCCccccccccCCcccEEeccCCCCccee-----ccCcccCCCccEEeeeCCCCCCC
Q 048462 228 ESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-----CCGVVPFPSLQTISVNGCPSLRK 282 (325)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~ 282 (325)
.+.....+++.|+.+.+++|...++. .....++..|+.+++++|+.++.
T Consensus 363 ------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 363 ------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 12234467889999999988766554 44445677899999999988874
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=3.6e-12 Score=109.23 Aligned_cols=223 Identities=17% Similarity=0.229 Sum_probs=140.6
Q ss_pred CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCC-CcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCccc
Q 048462 1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSN-TRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ 77 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~-~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 77 (325)
+++||.|||+.| .|+.+ |++|.+++.|.+|-+.+ |+|+.+|.. +.++..|+.|.+.-|...- ++..++..+++|.
T Consensus 90 l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~ 167 (498)
T KOG4237|consen 90 LHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLS 167 (498)
T ss_pred hhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcc
Confidence 468999999999 89988 89999999999988887 699999987 6789999999998855443 4444489999999
Q ss_pred EEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccc------cc----------ccc-c---------------
Q 048462 78 VFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA------VN----------RVK-S--------------- 125 (325)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------~~----------~~~-~--------------- 125 (325)
.|++..+.+ ....-..+..+..++.+.++.+.... .. ++. .
T Consensus 168 lLslyDn~~-------q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 168 LLSLYDNKI-------QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred hhcccchhh-------hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 999999876 22222255566666666655554110 00 000 0
Q ss_pred CccccCCceEE--EEc-eee-eecccc--cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc
Q 048462 126 SPKLQSCIKRL--AVV-LMA-SFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD 199 (325)
Q Consensus 126 ~~~~~~~L~~L--~l~-~~~-~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 199 (325)
+..+..+++.+ .+. .+. ...-|. +..+++|++|++++|....+. ++++ .....+++|.+.++ ++..
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-----~~aF--e~~a~l~eL~L~~N-~l~~ 312 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-----DGAF--EGAAELQELYLTRN-KLEF 312 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-----hhhh--cchhhhhhhhcCcc-hHHH
Confidence 00000011111 000 111 112233 778899999999998865322 3333 24567778878777 6665
Q ss_pred cc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccC
Q 048462 200 LK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRH 252 (325)
Q Consensus 200 l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 252 (325)
+. .+..+.+|+.|++++|. ++.+.. ..+.....|..|.+-.
T Consensus 313 v~~~~f~~ls~L~tL~L~~N~-it~~~~-----------~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 313 VSSGMFQGLSGLKTLSLYDNQ-ITTVAP-----------GAFQTLFSLSTLNLLS 355 (498)
T ss_pred HHHHhhhccccceeeeecCCe-eEEEec-----------ccccccceeeeeehcc
Confidence 53 45567788888888876 344432 2344455556665553
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=2.2e-11 Score=102.93 Aligned_cols=235 Identities=14% Similarity=0.119 Sum_probs=141.7
Q ss_pred CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCc---c-cccChh-------hhccccCceeeccCCCCCeee
Q 048462 2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTR---I-GQLPTG-------ITYLKNLKILRLDGMRYLAFV 65 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~---l-~~lp~~-------l~~l~~L~~L~l~~~~~~~~~ 65 (325)
..+.++++++| .++ .+.+.+.+.++|+..++++-. . .++|.. +..+++|+++++++|-+....
T Consensus 30 ~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 46789999999 665 345567778889998888752 2 355554 567889999999998665544
Q ss_pred ch---hhhhCCCcccEEEecccceeeeeeccCcc---------chhhhccCCCcceEEEEecCccccc--ccccCccccC
Q 048462 66 PC---QVISSLSSLQVFSWFSTELVELHYVDSTS---------VLAELESLENIHDISVTLCNVDAVN--RVKSSPKLQS 131 (325)
Q Consensus 66 ~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~ 131 (325)
+. ..++.+..|++|++.+|++-.. .... ..+-+.+-++|+.+....|+..... .+.......+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 32 2267899999999999987100 0000 1122345578999998888765432 2222333344
Q ss_pred CceEEEEce--eeeecc----cccccCCCCCeEEEcCCCCceec-cccCCCCCccccccccccEEEecCCCCCCccc---
Q 048462 132 CIKRLAVVL--MASFLL----PLDLRMDHLETLEIDRCSLESKN-DYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--- 201 (325)
Q Consensus 132 ~L~~L~l~~--~~~~~l----~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--- 201 (325)
.|+.+.+.. ++.-.+ .++.++++|+.|++.+|.+.... ... -..+ ..+++|+.|++++| .+.+=.
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L--akaL--~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL--AKAL--SSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH--HHHh--cccchheeeccccc-ccccccHHH
Confidence 577777762 222222 22677888888888888764211 000 0001 45677888888888 565421
Q ss_pred ---c-ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462 202 ---W-IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL 253 (325)
Q Consensus 202 ---~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (325)
. -...|+|+.|.+.+|..-.+-.. .+.......|.|+.|++.+|
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHHhcCCcc
Confidence 1 12367777777777754333221 11123344666777777766
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-10 Score=100.97 Aligned_cols=186 Identities=14% Similarity=0.123 Sum_probs=92.3
Q ss_pred hhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeee--eccc
Q 048462 70 ISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMAS--FLLP 147 (325)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~l~ 147 (325)
...|++++.|+++.|-+ .......+....+++|+.|+++.|......+-.... ...+++.|.++.|.. ..+.
T Consensus 142 ~k~~~~v~~LdLS~NL~-----~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLF-----HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-LLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhhCCcceeecchhhhH-----HhHHHHHHHHHhcccchhcccccccccCCccccchh-hhhhhheEEeccCCCCHHHHH
Confidence 44455555555555433 112223333445555555555555433221111000 122355555553332 2222
Q ss_pred c-cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhc
Q 048462 148 L-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEII 224 (325)
Q Consensus 148 ~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~ 224 (325)
. +..+|+|+.|.+.+|...- ....+...++.|+.|+|++++.+.. ++..+.+|+|..|+++.|. +.++.
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~-------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~ 287 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIIL-------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA 287 (505)
T ss_pred HHHHhCCcHHHhhhhcccccc-------eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhc
Confidence 2 4466777777777774320 1112224466788888887743322 2456677888888777765 33333
Q ss_pred ccCCCCCCCccccccccCCcccEEeccCCCCcceeccC--cccCCCccEEeee
Q 048462 225 GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG--VVPFPSLQTISVN 275 (325)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~ 275 (325)
. -+.+.......||+|++|++..+ ++++|+.. ....++|+.+.+.
T Consensus 288 ~-----~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 288 E-----PDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred C-----CCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence 2 11122234567888888888876 33333332 2235666666653
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3e-11 Score=100.09 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=80.3
Q ss_pred cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCC-C--cccc-ccCCCCccEEEEeccCCchhhc
Q 048462 149 DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCM-T--DLKW-IRYAPNLQFLYVSYCPRLSEII 224 (325)
Q Consensus 149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~--~l~~-~~~~~~L~~L~l~~~~~l~~~~ 224 (325)
+..+..|..|++++|......+ ..+...--++|+.|+++++.+- . .+.. .+.+|+|.+|++++|..+++-.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~V-----tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKV-----TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHhhhhHhhcCchHhhccchhh-----hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 5578899999999998652111 1111134578999999998422 1 1222 2369999999999998876643
Q ss_pred ccCCCCCCCccccccccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCC
Q 048462 225 GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCP 278 (325)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~ 278 (325)
. ..+..|+.|++|.++.|..+..- -......|+|.+|++.||-
T Consensus 331 ~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 331 F-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred H-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 2 46678999999999999776432 2224568999999999984
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.7e-09 Score=84.22 Aligned_cols=134 Identities=18% Similarity=0.288 Sum_probs=42.2
Q ss_pred hhCcccCceecCCCCcccccChhhh-ccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhh
Q 048462 22 IGKLINLCYLNLSNTRIGQLPTGIT-YLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAE 100 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 100 (325)
+.++.++++|+++++.++.+. .++ .+.+|+.|++++|.+. .++. +..++.|+.|++++|.+ . .....
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I-------~-~i~~~ 82 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRI-------S-SISEG 82 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS-----------S-CHH
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCC-------C-ccccc
Confidence 445557788888888776653 354 4777888888885443 3443 67778888888888877 2 22223
Q ss_pred h-ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcc
Q 048462 101 L-ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTR 179 (325)
Q Consensus 101 l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 179 (325)
+ ..+++|++|.+++|.+..+..+ ..+..+++|+.|++.+|+..+..-+ -.+.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l-----------------------~~L~~l~~L~~L~L~~NPv~~~~~Y----R~~v 135 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNEL-----------------------EPLSSLPKLRVLSLEGNPVCEKKNY----RLFV 135 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCC-----------------------GGGGG-TT--EEE-TT-GGGGSTTH----HHHH
T ss_pred hHHhCCcCCEEECcCCcCCChHHh-----------------------HHHHcCCCcceeeccCCcccchhhH----HHHH
Confidence 3 3577888888877766544322 2234667777777777776421100 0001
Q ss_pred ccccccccEEEecCC
Q 048462 180 TYCFRNLRHLSVKTC 194 (325)
Q Consensus 180 ~~~~~~L~~L~l~~~ 194 (325)
...+|+|+.||-...
T Consensus 136 i~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 136 IYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHH-TT-SEETTEET
T ss_pred HHHcChhheeCCEEc
Confidence 155677777765543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=9.6e-09 Score=93.23 Aligned_cols=191 Identities=23% Similarity=0.264 Sum_probs=129.7
Q ss_pred EecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccc-cCceeeccCCCCCeeechhhhhCCCcccEEEecccc
Q 048462 7 LDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLK-NLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTE 85 (325)
Q Consensus 7 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 85 (325)
+++..+ .+..-+..+.....++.|++.++.+..++.....+. +|+.|+++++. ...+|.. +..+++|+.|++..|.
T Consensus 98 l~~~~~-~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~-~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLN-RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSP-LRNLPNLKNLDLSFND 174 (394)
T ss_pred eecccc-ccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhh-hhccccccccccCCch
Confidence 555555 443334445566778888888888888887777774 88888888843 4445444 7788888888888887
Q ss_pred eeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEcCCC
Q 048462 86 LVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEIDRCS 164 (325)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~~~ 164 (325)
+ ...+......++|+.|.++++....++... .....|+++.+++......+. +..+.++..+.+.++.
T Consensus 175 l--------~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 175 L--------SDLPKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred h--------hhhhhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcceecchhhhhcccccccccCCce
Confidence 6 445555557788888888888776665432 223346777777654444444 6677777777777766
Q ss_pred CceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCc
Q 048462 165 LESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRL 220 (325)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l 220 (325)
.... .-....++++++|+++++ .+++++.++...+++.|+++++...
T Consensus 244 ~~~~--------~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 244 LEDL--------PESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eeec--------cchhccccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence 5311 011145677899999888 7888877888888999988887543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=7.2e-09 Score=81.83 Aligned_cols=106 Identities=28% Similarity=0.331 Sum_probs=43.2
Q ss_pred CCcEEecCCCCCCCcCchhhh-CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhh-hCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKLPEAIG-KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVI-SSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~ 80 (325)
+++.|+|+++ .+..+ +.++ .+.+|+.|++++|.++.+. ++..+++|++|++++|.+. .++.. + ..+++|++|+
T Consensus 20 ~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~-l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEG-LDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHH-HHHH-TT--EEE
T ss_pred cccccccccc-ccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccc-hHHhCCcCCEEE
Confidence 5789999999 88876 3465 5889999999999998885 5888999999999996554 45444 4 4699999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
+++|.+. .-.....+..+++|+.|++.+|....
T Consensus 95 L~~N~I~------~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 95 LSNNKIS------DLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TTS---------SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCcCC------ChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999982 22335677889999999999887653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.4e-09 Score=90.54 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=138.0
Q ss_pred CCCcEEecCCCCC------CC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCC
Q 048462 2 HALAVLDLSYNLD------LV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSL 73 (325)
Q Consensus 2 ~~L~~L~l~~~~~------~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 73 (325)
..|.+|.+++... +. .+|-.+.-.++|..+.++.|.-+.+......-|.|+++.+..... ...|. +-..
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~-~~~~~--l~pe 258 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTI-QDVPS--LLPE 258 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccc-ccccc--ccch
Confidence 4567777776521 11 234445556788888888875444433334457788888877332 22222 1122
Q ss_pred CcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCC
Q 048462 74 SSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMD 153 (325)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~ 153 (325)
.++.....+.-.. .+......+.-.+.|+++++++|.+..+..- .++.+.++.|+++......+.+++.++
T Consensus 259 ~~~~D~~~~E~~t------~~G~~~~~~dTWq~LtelDLS~N~I~~iDES---vKL~Pkir~L~lS~N~i~~v~nLa~L~ 329 (490)
T KOG1259|consen 259 TILADPSGSEPST------SNGSALVSADTWQELTELDLSGNLITQIDES---VKLAPKLRRLILSQNRIRTVQNLAELP 329 (490)
T ss_pred hhhcCccCCCCCc------cCCceEEecchHhhhhhccccccchhhhhhh---hhhccceeEEeccccceeeehhhhhcc
Confidence 2222111111000 1222233344446678888888876654322 223334788888877777777788999
Q ss_pred CCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCC
Q 048462 154 HLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS 233 (325)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 233 (325)
+|+.|++++|...+. .||. ..+-+++.|.++++ .+.+++.++.+=+|..|++++|. ++...
T Consensus 330 ~L~~LDLS~N~Ls~~------~Gwh--~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ld--------- 390 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAEC------VGWH--LKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELD--------- 390 (490)
T ss_pred cceEeecccchhHhh------hhhH--hhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHH---------
Confidence 999999999876432 3444 35778999999998 88989999889999999999886 33332
Q ss_pred ccccccccCCcccEEeccCCC
Q 048462 234 EIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 234 ~~~~~~~~~~~L~~L~l~~~~ 254 (325)
....++.+|-|+.+.+.+++
T Consensus 391 -eV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 391 -EVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -HhcccccccHHHHHhhcCCC
Confidence 23578889999999998875
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.64 E-value=8.8e-08 Score=91.51 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=69.1
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCccc-ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIG-QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
++.|+|++|..-+.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+.+|.. ++++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 556777777322356777777777777777777763 66767777777777777777776677766 7777777777777
Q ss_pred ccceeeeeeccCccchhhhccC-CCcceEEEEecC
Q 048462 83 STELVELHYVDSTSVLAELESL-ENIHDISVTLCN 116 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 116 (325)
+|.+ ....+..+... .++..+++.+|.
T Consensus 499 ~N~l-------~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSL-------SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcc-------cccCChHHhhccccCceEEecCCc
Confidence 7766 45555555442 344555555553
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=1.7e-09 Score=97.20 Aligned_cols=147 Identities=27% Similarity=0.388 Sum_probs=121.1
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
|..+.+..| .+..+|..++.+..|.+++++.|.+..+|..+..|+ |+.|-+++ +..+.+|.+ ++....|.+|+.+.
T Consensus 100 Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~-ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEE-IGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcc-cccchhHHHhhhhh
Confidence 445566666 677888888889999999999998888888888877 88888877 667888888 88888999999999
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEcC
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEIDR 162 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~ 162 (325)
|.+ ...+..++.+..|+.|.+..|....++.... . -.|.+|++++.....+|. +..|+.|++|-+.+
T Consensus 176 nei--------~slpsql~~l~slr~l~vrRn~l~~lp~El~--~--LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 176 NEI--------QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC--S--LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred hhh--------hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh--C--CceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 987 6788899999999999999988777644322 1 237999999888888998 99999999999999
Q ss_pred CCCc
Q 048462 163 CSLE 166 (325)
Q Consensus 163 ~~~~ 166 (325)
|+..
T Consensus 244 NPLq 247 (722)
T KOG0532|consen 244 NPLQ 247 (722)
T ss_pred CCCC
Confidence 9863
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.61 E-value=3.1e-08 Score=64.27 Aligned_cols=58 Identities=36% Similarity=0.554 Sum_probs=37.9
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCC
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMR 60 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 60 (325)
|+|++|++++| .++.+| ..+..+++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46677777777 666665 456667777777777776665544 35666777777766653
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.59 E-value=9.8e-09 Score=87.13 Aligned_cols=241 Identities=15% Similarity=0.148 Sum_probs=157.8
Q ss_pred hhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCeee----c-------hhhhhCCCcccEEEecc
Q 048462 20 EAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAFV----P-------CQVISSLSSLQVFSWFS 83 (325)
Q Consensus 20 ~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~----~-------~~~~~~l~~L~~L~l~~ 83 (325)
+.+..+..+..+++++|.++ .+-..+.+-++|+..++++ .+.+.. | .. +-.+++|+.|+++.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~a-L~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKA-LLGCPKLQKLDLSD 101 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHH-HhcCCceeEeeccc
Confidence 44567889999999999873 4445577788899998887 444422 2 22 55678999999999
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCccccccc-----------ccCccccCCceEEEEceeeeecccc----
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRV-----------KSSPKLQSCIKRLAVVLMASFLLPL---- 148 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~~l~~---- 148 (325)
|-+- ......+..-+.++..|++|.+.+|......+- .........|+.+.+.+.+...-+.
T Consensus 102 NA~G---~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 102 NAFG---PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred cccC---ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 8761 001122334466789999999999976543211 1122233458888888554443333
Q ss_pred --cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCcc------ccccCCCCccEEEEeccC
Q 048462 149 --DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDL------KWIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 149 --l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l------~~~~~~~~L~~L~l~~~~ 218 (325)
++.++.|+.+.+..|......+ ..+.. ..+++|+.|+|.++ .++.- ..+..+++|+.|++.+|-
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~-----~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGV-----TALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHhccccceEEEecccccCchh-----HHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc
Confidence 7778999999999888652111 00111 57899999999998 55542 235568899999999996
Q ss_pred CchhhcccCCCCCCCcccc-ccccCCcccEEeccCCCCcce----eccCcccCCCccEEeeeCCCCC
Q 048462 219 RLSEIIGTYESPGTSEIEE-SQDFFSNLMVIDLRHLPSLTS----ICCGVVPFPSLQTISVNGCPSL 280 (325)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~c~~l 280 (325)
.-+. +...+.. ....+|+|+.+.+.+|..-.+ +.......|.|+.|++++| ++
T Consensus 253 l~~~--------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 253 LENE--------GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred cccc--------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 4222 1222222 234589999999999843322 2222334799999999998 44
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=8.3e-08 Score=87.11 Aligned_cols=170 Identities=26% Similarity=0.340 Sum_probs=125.9
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcc-cCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLI-NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+.++.|++.++ .++++|....... +|+.|+++++.+..+|..+..+++|+.|++++|. ...+|.. ....++|+.|+
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL-LSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh-hhhhhhhhhee
Confidence 45789999999 8999998888885 9999999999999998889999999999999954 4556654 45899999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccc-cccccCccccCCceEEEEceeeeecccc-cccCCCCCeE
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAV-NRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETL 158 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L 158 (325)
++++.+ ...+..+.....|+++.+.++..... ..+... ..+..+.+.+.....++. ++.++.++.|
T Consensus 193 ls~N~i--------~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~----~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 193 LSGNKI--------SDLPPEIELLSALEELDLSNNSIIELLSSLSNL----KNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred ccCCcc--------ccCchhhhhhhhhhhhhhcCCcceecchhhhhc----ccccccccCCceeeeccchhcccccccee
Confidence 999987 45555555666799999988853222 112111 124455555545445344 7788899999
Q ss_pred EEcCCCCceeccccCCCCCccccccccccEEEecCCC
Q 048462 159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCP 195 (325)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (325)
++++|...+.. . .....++++|++++..
T Consensus 261 ~~s~n~i~~i~------~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 261 DLSNNQISSIS------S---LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccccccccc------c---ccccCccCEEeccCcc
Confidence 99998865321 1 2567899999999873
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=2.1e-07 Score=60.34 Aligned_cols=60 Identities=28% Similarity=0.430 Sum_probs=47.3
Q ss_pred ccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccce
Q 048462 26 INLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTEL 86 (325)
Q Consensus 26 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 86 (325)
++|++|++++|+++.+|. .+.++++|++|++++|... .++..++..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 468899999998888875 4678999999999986554 45544488899999999988763
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=2.6e-08 Score=83.12 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=73.7
Q ss_pred hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462 22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 101 (325)
+..++.|+++|+++|.++++-.++.=.|+++.|++++|.+.. +.. +..+++|++||+++|.+ .....-=
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~n--La~L~~L~~LDLS~N~L--------s~~~Gwh 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQN--LAELPQLQLLDLSGNLL--------AECVGWH 348 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-ehh--hhhcccceEeecccchh--------HhhhhhH
Confidence 334556666666666666665555556666666666644332 222 55566666666666654 1111111
Q ss_pred ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc---ccccCCCCCeEEEcCCCCc
Q 048462 102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP---LDLRMDHLETLEIDRCSLE 166 (325)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~---~l~~l~~L~~L~l~~~~~~ 166 (325)
.++-+++.|.+++|.+.+..++....+ |..|++++.+.-.+. +++++|-|+.+.+.+|+.-
T Consensus 349 ~KLGNIKtL~La~N~iE~LSGL~KLYS----LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSGLRKLYS----LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhhhHhhhh----heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 244556666666665555444433332 466666654444333 3778888888888888853
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=5.2e-08 Score=88.86 Aligned_cols=79 Identities=32% Similarity=0.428 Sum_probs=34.9
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+|.+|++.+| .+..+...+..|.+|++|++++|.++.+. ++..++.|+.|++.+|.+ ..+.. +..+++|+.+++.
T Consensus 96 ~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i-~~~~~--~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI-SDISG--LESLKSLKLLDLS 170 (414)
T ss_pred ceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc-hhccC--CccchhhhcccCC
Confidence 4444555555 44444332444555555555555444442 234444455555555322 22222 3334445555555
Q ss_pred ccce
Q 048462 83 STEL 86 (325)
Q Consensus 83 ~~~~ 86 (325)
++.+
T Consensus 171 ~n~i 174 (414)
T KOG0531|consen 171 YNRI 174 (414)
T ss_pred cchh
Confidence 5444
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.1e-07 Score=79.40 Aligned_cols=203 Identities=15% Similarity=0.106 Sum_probs=102.0
Q ss_pred EEecCCCCCCCcC---chhhhCcccCceecCCCCccc---ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 6 VLDLSYNLDLVKL---PEAIGKLINLCYLNLSNTRIG---QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 6 ~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
.|.+.+| .+... ...-..+.+++.+++.+|.+. ++...+.+||.|++|+++.|.....+... -....+|+.|
T Consensus 49 llvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~l 126 (418)
T KOG2982|consen 49 LLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVL 126 (418)
T ss_pred hheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEE
Confidence 4455555 44432 122335778888888888773 55555678888888888887655443321 1245678888
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc-cCccccCCceEEEEceeeeecccc----cccCCC
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK-SSPKLQSCIKRLAVVLMASFLLPL----DLRMDH 154 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~----l~~l~~ 154 (325)
-+.++.+ .....-..+..+|.+++|+++.|....+..-. .+......+++++..+|....+.. ..-+|+
T Consensus 127 VLNgT~L------~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 127 VLNGTGL------SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EEcCCCC------ChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 8887765 12334445666777777777776432211000 000011123444444332221111 113456
Q ss_pred CCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc---ccccCCCCccEEEEeccCCchhh
Q 048462 155 LETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL---KWIRYAPNLQFLYVSYCPRLSEI 223 (325)
Q Consensus 155 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~L~~L~l~~~~~l~~~ 223 (325)
+..+.+..|+.-+...+ .++ ..++.+..|+++.. ++.++ ..+..+|.|..|.+.+++..+.+
T Consensus 201 v~sv~v~e~PlK~~s~e---k~s---e~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSE---KGS---EPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred chheeeecCcccchhhc---ccC---CCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 66666655543211100 011 22344445555544 44443 23445566666666666655444
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.35 E-value=2.9e-08 Score=89.38 Aligned_cols=170 Identities=21% Similarity=0.224 Sum_probs=116.2
Q ss_pred cccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccC
Q 048462 25 LINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104 (325)
Q Consensus 25 l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 104 (325)
+.--...+++.|++.++|.....+..|+.+.+..| ....+|.. +.++..|..++++.|++ ...+..++.+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~Nql--------S~lp~~lC~l 143 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSNQL--------SHLPDGLCDL 143 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccchh--------hcCChhhhcC
Confidence 33445567777777778877777777777777773 34455655 77788888888888776 5566667666
Q ss_pred CCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc-cccCCCCCeEEEcCCCCceeccccCCCCCcccccc
Q 048462 105 ENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCF 183 (325)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (325)
+ |+.|-+++|+....+.-.. ....+..|+.+.++...+|+ ++++..|+.|.+..|...+...+. . .
T Consensus 144 p-Lkvli~sNNkl~~lp~~ig---~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El--------~-~ 210 (722)
T KOG0532|consen 144 P-LKVLIVSNNKLTSLPEEIG---LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL--------C-S 210 (722)
T ss_pred c-ceeEEEecCccccCCcccc---cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH--------h-C
Confidence 6 7777777777665543222 33346777777777777777 888888888888888764221111 1 2
Q ss_pred ccccEEEecCCCCCCcccc-ccCCCCccEEEEeccC
Q 048462 184 RNLRHLSVKTCPCMTDLKW-IRYAPNLQFLYVSYCP 218 (325)
Q Consensus 184 ~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~ 218 (325)
-.|..|+++.+ ++..+|. ++++.+|++|.|.+|+
T Consensus 211 LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 211 LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CceeeeecccC-ceeecchhhhhhhhheeeeeccCC
Confidence 24777788777 7887774 6678888888888887
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=9e-08 Score=78.85 Aligned_cols=240 Identities=17% Similarity=0.141 Sum_probs=148.5
Q ss_pred CCCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCcc----cccCh-------hhhccccCceeeccCCCCCee
Q 048462 1 MHALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRI----GQLPT-------GITYLKNLKILRLDGMRYLAF 64 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l----~~lp~-------~l~~l~~L~~L~l~~~~~~~~ 64 (325)
+..+..++|||| .++ .+...+.+-++|+..+++.-.. .+++. .+-+||+|+..++++|-+...
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356788999999 666 3444566677888888876422 24444 357899999999999988776
Q ss_pred echh---hhhCCCcccEEEecccceeeeeeccCc------cchhhhccCCCcceEEEEecCccccc--ccccCccccCCc
Q 048462 65 VPCQ---VISSLSSLQVFSWFSTELVELHYVDST------SVLAELESLENIHDISVTLCNVDAVN--RVKSSPKLQSCI 133 (325)
Q Consensus 65 ~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L 133 (325)
.|.. .++.-..|.+|.+.+|+.-++--.... ...+-...-|.|+.+....|+..... .+.........|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 6632 267788999999999987211000000 01112334578999988888755332 222223333567
Q ss_pred eEEEEc--eeeeec-----ccccccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc---
Q 048462 134 KRLAVV--LMASFL-----LPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK--- 201 (325)
Q Consensus 134 ~~L~l~--~~~~~~-----l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~--- 201 (325)
+.+.+. ++++.. +-.+..+.+|+.|++++|-+...+. ..+.. ..++.|+.|.+.+| -++.-.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS-----~~La~al~~W~~lrEL~lnDC-lls~~G~~~ 261 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS-----RYLADALCEWNLLRELRLNDC-LLSNEGVKS 261 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH-----HHHHHHhcccchhhhccccch-hhccccHHH
Confidence 888777 344332 2236678999999999988752110 00111 34677999999999 554311
Q ss_pred ---cc--cCCCCccEEEEeccCCchhhcccCCCCCCCccc-cccccCCcccEEeccCC
Q 048462 202 ---WI--RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE-ESQDFFSNLMVIDLRHL 253 (325)
Q Consensus 202 ---~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 253 (325)
.+ ...|+|..|...++..-..+... ...+ ..-+.+|-|..|.+.|+
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~------~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGGIILD------ISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCceeee------echhhhhhcccHHHHHHHHccC
Confidence 11 14788999988888754444321 0111 12246777777877775
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=4.4e-08 Score=89.31 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=90.5
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
.++.++++.+ .++.+-..+..+++|..+++.++.++.+...+..+++|++|++++|. ++.+.. +..+..|+.|++.
T Consensus 73 ~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhhheec
Confidence 3455556666 56654444777888888888888887776557788888888888844 444443 6677778888888
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR 162 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~ 162 (325)
+|.+ ..+..+..++.|+.+++.++....++... ......++.+.+.+.....+..+..+..+..+++..
T Consensus 149 ~N~i---------~~~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 149 GNLI---------SDISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLD 217 (414)
T ss_pred cCcc---------hhccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccchHHHHHHHHhhccc
Confidence 8876 33445555777888888888766654420 112223555555544433333333333343334444
Q ss_pred CC
Q 048462 163 CS 164 (325)
Q Consensus 163 ~~ 164 (325)
+.
T Consensus 218 n~ 219 (414)
T KOG0531|consen 218 NK 219 (414)
T ss_pred cc
Confidence 43
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.27 E-value=9.6e-08 Score=88.86 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=25.7
Q ss_pred CCcccEEeccCCCCcceeccCccc--CCCccEEeeeCCCCCCC
Q 048462 242 FSNLMVIDLRHLPSLTSICCGVVP--FPSLQTISVNGCPSLRK 282 (325)
Q Consensus 242 ~~~L~~L~l~~~~~l~~~~~~~~~--~~~L~~L~l~~c~~l~~ 282 (325)
+..++.|++..|...+.-...... +..++.+++.+|+.++.
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 344788888888655543222111 66778888888877763
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=9.1e-07 Score=52.83 Aligned_cols=40 Identities=43% Similarity=0.577 Sum_probs=27.3
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP 42 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp 42 (325)
++|++|++++| .++.+|+.+++|++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46777777777 67777766777777777777777766553
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=4.5e-06 Score=79.93 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=61.1
Q ss_pred CceecCCCCcc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCC
Q 048462 28 LCYLNLSNTRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN 106 (325)
Q Consensus 28 L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 106 (325)
++.|+++++.+ +.+|..+.++++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+ ....+..++.+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l-------sg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF-------NGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC-------CCCCchHHhcCCC
Confidence 66777777776 367777777777888888777777777766 77777788888777776 5566777777777
Q ss_pred cceEEEEecCcc
Q 048462 107 IHDISVTLCNVD 118 (325)
Q Consensus 107 L~~L~l~~~~~~ 118 (325)
|+.|++++|...
T Consensus 492 L~~L~Ls~N~l~ 503 (623)
T PLN03150 492 LRILNLNGNSLS 503 (623)
T ss_pred CCEEECcCCccc
Confidence 777777777544
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=2.6e-05 Score=69.45 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=33.6
Q ss_pred CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccc
Q 048462 24 KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFST 84 (325)
Q Consensus 24 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 84 (325)
.|.++++|++++|.++.+|. --.+|+.|.+++|.....+|.. + ..+|+.|++.+|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 45667777777776666662 1224777777766666666543 3 246677777766
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=2.3e-06 Score=81.97 Aligned_cols=107 Identities=25% Similarity=0.308 Sum_probs=70.7
Q ss_pred CCcEEecCCCCCCCcC-chhhhC-cccCceecCCCCcc--cccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 3 ALAVLDLSYNLDLVKL-PEAIGK-LINLCYLNLSNTRI--GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~l-p~~~~~-l~~L~~L~l~~~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+|+.||++|...+..- |..++. +|.|++|.+++-.+ +++.....++|+|..||+++++ ++.+ .+ ++.+++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G-IS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG-ISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HH-HhccccHHH
Confidence 5788888886433322 444443 68888888887654 3444445678888888888843 3444 44 888888888
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (325)
|.+.+-.+ .......++..+++|+.|+|+.....
T Consensus 200 L~mrnLe~------e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEF------ESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCC------CchhhHHHHhcccCCCeeeccccccc
Confidence 88887665 12245667777888888888766543
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.00 E-value=5.2e-07 Score=83.95 Aligned_cols=213 Identities=18% Similarity=0.216 Sum_probs=96.4
Q ss_pred ccccCceeeccCCCCCee--echhhhhCCCcccEEEeccc-ceeeeeeccCccchhhhccCCCcceEEEEecCccccccc
Q 048462 47 YLKNLKILRLDGMRYLAF--VPCQVISSLSSLQVFSWFST-ELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRV 123 (325)
Q Consensus 47 ~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 123 (325)
.++.|+.+.+.+|..... +-.. ...+++|+.|++..+ .... ............+++|+.+++.++.......+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLIT---LSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccc---cchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 356666666666554443 2222 455666666666652 1100 00001112333446666666666653333333
Q ss_pred ccCccccCCceEEEEceeeee---cccc-cccCCCCCeEEEcCCCCc-eeccccCCCCCccccccccccEEEecCCC---
Q 048462 124 KSSPKLQSCIKRLAVVLMASF---LLPL-DLRMDHLETLEIDRCSLE-SKNDYFGDQGRTRTYCFRNLRHLSVKTCP--- 195 (325)
Q Consensus 124 ~~~~~~~~~L~~L~l~~~~~~---~l~~-l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--- 195 (325)
......++.|+.|.+.++..+ .+.. ...+++|++|++++|..+ +..+ ... ...+++|+.+.+..+.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l----~~~--~~~c~~l~~l~~~~~~~c~ 335 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL----EAL--LKNCPNLRELKLLSLNGCP 335 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH----HHH--HHhCcchhhhhhhhcCCCc
Confidence 333333445666665544432 2333 445677888888877765 1111 001 1235555554443332
Q ss_pred CCCcccc--ccCCC--CccEEEEeccCCchhhcccCCCCCCCccccccccCCccc-EEeccCCCCc-ceeccCcccCCCc
Q 048462 196 CMTDLKW--IRYAP--NLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLM-VIDLRHLPSL-TSICCGVVPFPSL 269 (325)
Q Consensus 196 ~l~~l~~--~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~~~~~~~~~~~L 269 (325)
.+++... ..... .+..+.+.+|+.+++.... ..+ ..... .+.+.+|+.+ ..+......+..+
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~-----------~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l 403 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLS-----------YCG-ISDLGLELSLRGCPNLTESLELRLCRSDSL 403 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhh-----------hhh-ccCcchHHHhcCCcccchHHHHHhccCCcc
Confidence 2332211 11111 3444444455444443320 111 11111 4556666666 2333223334448
Q ss_pred cEEeeeCCCCCC
Q 048462 270 QTISVNGCPSLR 281 (325)
Q Consensus 270 ~~L~l~~c~~l~ 281 (325)
+.|++..|...+
T Consensus 404 ~~L~l~~~~~~t 415 (482)
T KOG1947|consen 404 RVLNLSDCRLVT 415 (482)
T ss_pred ceEecccCcccc
Confidence 888888886665
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=1.6e-06 Score=83.08 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=45.3
Q ss_pred cCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCC
Q 048462 151 RMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYE 228 (325)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 228 (325)
.+|.|++|.+.+-.... +.+.. .+||+|..||++++ +++.+..+..+++|+.|.+.+-+....
T Consensus 146 ~LPsL~sL~i~~~~~~~--------~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~------ 210 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDN--------DDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESY------ 210 (699)
T ss_pred hCcccceEEecCceecc--------hhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCch------
Confidence 45667777766654431 11111 46677777777777 666666666666666666655432210
Q ss_pred CCCCCccccccccCCcccEEeccCC
Q 048462 229 SPGTSEIEESQDFFSNLMVIDLRHL 253 (325)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (325)
.....+-.+.+|+.||++.-
T Consensus 211 -----~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 211 -----QDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred -----hhHHHHhcccCCCeeecccc
Confidence 00123345666666666653
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=6e-05 Score=67.22 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=43.0
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCC-cccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNT-RIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++++.|++++| .++.+|. + -.+|++|.+++| .++.+|..+ ..+|++|++++|.....+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceEE
Confidence 56777777777 6777762 1 135777777776 456666544 24677777777655444443 255565
Q ss_pred eccc
Q 048462 81 WFST 84 (325)
Q Consensus 81 l~~~ 84 (325)
+..+
T Consensus 119 L~~n 122 (426)
T PRK15386 119 IKGS 122 (426)
T ss_pred eCCC
Confidence 5543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=3.3e-06 Score=70.71 Aligned_cols=195 Identities=18% Similarity=0.178 Sum_probs=103.5
Q ss_pred CCCcEEecCCCCCCCc---CchhhhCcccCceecCCCCcc----cccChhhhccccCceeeccCCCCCeeechhhhhCCC
Q 048462 2 HALAVLDLSYNLDLVK---LPEAIGKLINLCYLNLSNTRI----GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLS 74 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~---lp~~~~~l~~L~~L~l~~~~l----~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 74 (325)
.+++.+||.+| .+.+ +-..+.+|++|++|+++.|.+ +.+| ....+|+.|-+.+......-.......++
T Consensus 71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 56788999999 6663 444566899999999998865 3444 34668888888885444333333266788
Q ss_pred cccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc---ccc
Q 048462 75 SLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL---DLR 151 (325)
Q Consensus 75 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~---l~~ 151 (325)
.++.|.++.|....+... ..-... --+.+.+++...|..............-+++..+.+..+......+ ...
T Consensus 147 ~vtelHmS~N~~rq~n~D--d~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLD--DNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hhhhhhhccchhhhhccc--cccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCC
Confidence 888888888744111000 000000 1123444444444322211111111112223333333221111111 334
Q ss_pred CCCCCeEEEcCCCCceeccccCCCCCccc---cccccccEEEecCCCCCCcccc-------ccCCCCccEEE
Q 048462 152 MDHLETLEIDRCSLESKNDYFGDQGRTRT---YCFRNLRHLSVKTCPCMTDLKW-------IRYAPNLQFLY 213 (325)
Q Consensus 152 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~~-------~~~~~~L~~L~ 213 (325)
+|.+..|++..+.. .+|... ..|+.|..|.+.+.|-+..+.. ++.+++++.|+
T Consensus 223 ~p~~~~LnL~~~~i---------dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 223 FPSLSCLNLGANNI---------DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCcchhhhhccccc---------ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 56666677766654 233222 6789999998888865444322 33456666554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.6e-05 Score=47.48 Aligned_cols=36 Identities=39% Similarity=0.492 Sum_probs=27.3
Q ss_pred ccCceecCCCCcccccChhhhccccCceeeccCCCC
Q 048462 26 INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRY 61 (325)
Q Consensus 26 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 61 (325)
++|++|++++|+++.+|..+.+|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 468888888888888887788888888888888643
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=5e-07 Score=83.92 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=75.8
Q ss_pred hhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccccc
Q 048462 70 ISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLD 149 (325)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l 149 (325)
+.-++.|++|+++.|+. .....+..+++|++|++++|....++.+.... ..|..|.++|..-..+-.+
T Consensus 183 Lqll~ale~LnLshNk~---------~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g---c~L~~L~lrnN~l~tL~gi 250 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKF---------TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVG---CKLQLLNLRNNALTTLRGI 250 (1096)
T ss_pred HHHHHHhhhhccchhhh---------hhhHHHHhcccccccccccchhccccccchhh---hhheeeeecccHHHhhhhH
Confidence 45567788888888876 22336777888888888888877766554332 2378888888777777778
Q ss_pred ccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCC
Q 048462 150 LRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCP 195 (325)
Q Consensus 150 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (325)
.++++|+.|++++|-..+. ....|...+..|+.|+|.+++
T Consensus 251 e~LksL~~LDlsyNll~~h------seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEH------SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHhhhhcc------hhhhHHHHHHHHHHHhhcCCc
Confidence 8889999999988875421 111222456778888888874
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=1e-06 Score=81.96 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=38.2
Q ss_pred hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462 20 EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA 99 (325)
Q Consensus 20 ~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 99 (325)
.++.-++.|+.|+++.|+++... .+..|++|++||+++| ....+|......++ |+.|.+++|.+ .-..
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l---------~tL~ 248 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNAL---------TTLR 248 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHH---------Hhhh
Confidence 33444455555555555554432 4455555555555552 23333321122233 45555554433 2233
Q ss_pred hhccCCCcceEEEEecCcc
Q 048462 100 ELESLENIHDISVTLCNVD 118 (325)
Q Consensus 100 ~l~~l~~L~~L~l~~~~~~ 118 (325)
.+.++++|+.|++++|-+.
T Consensus 249 gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred hHHhhhhhhccchhHhhhh
Confidence 3444444555555444433
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=8.1e-06 Score=60.64 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=77.1
Q ss_pred CcEEecCCCCCCCcCchh---hhCcccCceecCCCCcccccChhhh-ccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 4 LAVLDLSYNLDLVKLPEA---IGKLINLCYLNLSNTRIGQLPTGIT-YLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~---~~~l~~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+-.++|+.| .+..+++. +.+..+|...++++|.++.+|..+. +++-++++++.+ +.+..+|.+ +..++.|+.|
T Consensus 29 ~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSL 105 (177)
T ss_pred hhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhc
Confidence 346788888 66666554 4456677778889988888887764 466888888888 556678888 8888999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
+++.|.+ ...+..+..+.++..|+..++....
T Consensus 106 Nl~~N~l--------~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 106 NLRFNPL--------NAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ccccCcc--------ccchHHHHHHHhHHHhcCCCCcccc
Confidence 9988887 4556666667777777776665443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00015 Score=57.53 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=76.6
Q ss_pred CceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCC--CCCCccccccCCCCc
Q 048462 132 CIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC--PCMTDLKWIRYAPNL 209 (325)
Q Consensus 132 ~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~l~~~~~~~~L 209 (325)
....+++++.....++.+..+++|.+|.+.+|....+.- +.- ..+++|..|.+.++ ..+.++..++.+|.|
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-----~L~--~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-----DLD--TFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeecc-----chh--hhccccceEEecCcchhhhhhcchhccCCcc
Confidence 356777887777777778899999999999999764321 111 35788999999986 244456678889999
Q ss_pred cEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462 210 QFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL 253 (325)
Q Consensus 210 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (325)
++|.+-+++.-+.-.= . ...+..+|+|+.||+.+.
T Consensus 116 ~~Ltll~Npv~~k~~Y-R--------~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNY-R--------LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCc-e--------eEEEEecCcceEeehhhh
Confidence 9999999885332210 0 025677999999999875
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=1.8e-05 Score=65.75 Aligned_cols=103 Identities=18% Similarity=0.120 Sum_probs=74.2
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+.+.|+.+|| +++++ ....+|+.|+.|.|+-|++..+-. +.+|++|++|++..|.+.....-+-++++++|+.|-+.
T Consensus 20 ~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCC-CccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 5678999999 88887 457789999999999999988744 89999999999999765543332227889999999888
Q ss_pred ccceeeeeeccCcc-chhhhccCCCcceEE
Q 048462 83 STELVELHYVDSTS-VLAELESLENIHDIS 111 (325)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~ 111 (325)
.|.-.. ..... -...+.-+++|+.|+
T Consensus 97 ENPCc~---~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCG---EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCccc---ccchhHHHHHHHHcccchhcc
Confidence 865410 00001 123456677777775
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.05 E-value=0.00075 Score=56.24 Aligned_cols=242 Identities=13% Similarity=0.094 Sum_probs=135.5
Q ss_pred hhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCeee-----------chhhhhCCCcccEEEecc
Q 048462 20 EAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAFV-----------PCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 20 ~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~l~~L~~L~l~~ 83 (325)
..+.-+..+..+++++|.++ .+...+.+-.+|+..++++ .+.+.. ... +-+|+.|+..+++.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~a-Llkcp~l~~v~LSD 101 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKA-LLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHH-HhcCCcceeeeccc
Confidence 33455788999999999773 3444466667788888876 443322 122 66889999999999
Q ss_pred cceeeeeeccCccchh----hhccCCCcceEEEEecCcccccccccC-----------ccccCCceEEEEceeeeecccc
Q 048462 84 TELVELHYVDSTSVLA----ELESLENIHDISVTLCNVDAVNRVKSS-----------PKLQSCIKRLAVVLMASFLLPL 148 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~-----------~~~~~~L~~L~l~~~~~~~l~~ 148 (325)
|-+ ...++. .+.+.+.|.+|.+.+|....+.+-... ..-.+.|+.+.+...+...-+.
T Consensus 102 NAf-------g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 102 NAF-------GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccc-------CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 876 333333 355678899999999876543221110 1112346777666433322222
Q ss_pred ------cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc------cccCCCCccEEEEec
Q 048462 149 ------DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK------WIRYAPNLQFLYVSY 216 (325)
Q Consensus 149 ------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~------~~~~~~~L~~L~l~~ 216 (325)
+....+|+.+.+..|..-..++.. ........+.+|+.|+++++ .++-.. .+...+.|+.|.+.+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~--L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTM--LAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHH--HHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccc
Confidence 445568888888877754211100 00011145678888888877 444321 233456778888888
Q ss_pred cCCchhhcccCCCCCCCccc--cccccCCcccEEeccCCCCcce-ec------cCcccCCCccEEeeeCCCCCCC
Q 048462 217 CPRLSEIIGTYESPGTSEIE--ESQDFFSNLMVIDLRHLPSLTS-IC------CGVVPFPSLQTISVNGCPSLRK 282 (325)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~-~~------~~~~~~~~L~~L~l~~c~~l~~ 282 (325)
|-.-..-. ..+. +.-..+|+|..|....+..-.. +. +...++|-|..|.+.|+ +++.
T Consensus 252 Clls~~G~--------~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 252 CLLSNEGV--------KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred hhhccccH--------HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchh
Confidence 75321111 1111 1223467777776665422111 11 12234677777777665 5543
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.99 E-value=0.00017 Score=53.80 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=69.1
Q ss_pred CCcEEecCCCCCCCcCchhhhCc-ccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKL-INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
+|...+|++| .+.+.|+.+... +.+++|++.+|++..+|..+..++.|+.|+++.|.+ ...|.- +..+.++-.|+.
T Consensus 54 el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l-~~~p~v-i~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL-NAEPRV-IAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc-ccchHH-HHHHHhHHHhcC
Confidence 5778899999 899998877754 589999999999999999999999999999999554 445655 777999999998
Q ss_pred cccce
Q 048462 82 FSTEL 86 (325)
Q Consensus 82 ~~~~~ 86 (325)
..+..
T Consensus 131 ~~na~ 135 (177)
T KOG4579|consen 131 PENAR 135 (177)
T ss_pred CCCcc
Confidence 88876
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.0023 Score=50.99 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=19.7
Q ss_pred cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCC
Q 048462 149 DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC 194 (325)
Q Consensus 149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (325)
+..+|.|++|.+-+|+..+..-+ -......+|+|+.|++++.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~Y----R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNY----RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCchhcccCc----eeEEEEecCcceEeehhhh
Confidence 34556666666666654321100 0011134566666666554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.00098 Score=55.15 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=58.1
Q ss_pred hhCcccCceecCCCCcccccChhhhccccCceeeccCC--CCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462 22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGM--RYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA 99 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 99 (325)
......|+.+++.++.++.+ ..+-.|++|++|.++.| .....++.- ..++++|+++.++.|++. .-....
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~------~lstl~ 110 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK------DLSTLR 110 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc------cccccc
Confidence 34456677777777655433 12345789999999988 455555544 556799999999999871 112233
Q ss_pred hhccCCCcceEEEEecCccc
Q 048462 100 ELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 100 ~l~~l~~L~~L~l~~~~~~~ 119 (325)
-+..+++|..|++..|....
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 34556677788888876543
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.12 E-value=0.0018 Score=32.14 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=10.9
Q ss_pred CCcEEecCCCCCCCcCchhhh
Q 048462 3 ALAVLDLSYNLDLVKLPEAIG 23 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~ 23 (325)
+|++||+++| .++.+|+.++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3556666666 5555555444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.0011 Score=55.36 Aligned_cols=78 Identities=27% Similarity=0.287 Sum_probs=61.2
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC--hhhhccccCceeeccCCCCCeeec----hhhhhCCC
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP--TGITYLKNLKILRLDGMRYLAFVP----CQVISSLS 74 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~ 74 (325)
|+.|++|.|+-| .|+.+ ..+..|++|+.|+|+.|.|..+- .-+.++++|+.|-+..|-..+.-+ ..++.-++
T Consensus 40 Mp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 40 MPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred cccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 688999999999 88888 45899999999999999886442 237889999999988775544333 33466788
Q ss_pred cccEEE
Q 048462 75 SLQVFS 80 (325)
Q Consensus 75 ~L~~L~ 80 (325)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 888886
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0028 Score=31.41 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=12.6
Q ss_pred cCceecCCCCcccccChhhhc
Q 048462 27 NLCYLNLSNTRIGQLPTGITY 47 (325)
Q Consensus 27 ~L~~L~l~~~~l~~lp~~l~~ 47 (325)
+|++|++++|.++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.0014 Score=52.23 Aligned_cols=64 Identities=30% Similarity=0.426 Sum_probs=35.3
Q ss_pred ccccccEEEecCCCCCCcc--cccc-CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCc
Q 048462 182 CFRNLRHLSVKTCPCMTDL--KWIR-YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSL 256 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~l--~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 256 (325)
.++.++.|.+.+|.++.+. ..++ -.|+|+.|+|++|+.+++... ..+..+++|+.|.+.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhh
Confidence 3455555566666555542 2222 356666666666666665543 45556666666666655433
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.75 E-value=0.005 Score=51.05 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=40.5
Q ss_pred hccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccccc
Q 048462 46 TYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVN 121 (325)
Q Consensus 46 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 121 (325)
-.+..|+.+.+.++..++ +.. +..+++|+.|.++.|.. .....+..-...+++|+++.+++|++..+.
T Consensus 40 d~~~~le~ls~~n~gltt-~~~--~P~Lp~LkkL~lsdn~~-----~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-LTN--FPKLPKLKKLELSDNYR-----RVSGGLEVLAEKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred ccccchhhhhhhccceee-ccc--CCCcchhhhhcccCCcc-----cccccceehhhhCCceeEEeecCCcccccc
Confidence 345566666666643322 222 55678888888888832 003333434445588888888888766543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.20 E-value=0.012 Score=27.02 Aligned_cols=17 Identities=53% Similarity=0.681 Sum_probs=7.6
Q ss_pred CCCcEEecCCCCCCCcCc
Q 048462 2 HALAVLDLSYNLDLVKLP 19 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp 19 (325)
++|++|++++| .++.+|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 35666666666 455543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.18 E-value=0.13 Score=38.26 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=37.3
Q ss_pred hhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462 21 AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA 99 (325)
Q Consensus 21 ~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 99 (325)
.+.++.+|+.+.+.. .++.++.. +..+.+|+.+.+.+. ...++..++..+++|+.+.+..... .....
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~~~--------~i~~~ 75 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNNLK--------SIGDN 75 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETSTT---------EE-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccccc--------ccccc
Confidence 455666777777664 34444333 455667777777652 4444444466666677777755221 11222
Q ss_pred hhccCCCcceEEEE
Q 048462 100 ELESLENIHDISVT 113 (325)
Q Consensus 100 ~l~~l~~L~~L~l~ 113 (325)
.+..+++|+.+.+.
T Consensus 76 ~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 AFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TTECEEEET
T ss_pred cccccccccccccC
Confidence 34446666666653
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=0.0083 Score=47.93 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=34.0
Q ss_pred cccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceee
Q 048462 75 SLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMA 142 (325)
Q Consensus 75 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 142 (325)
.++.++-+++.+ ...-...+..++.++.|.+.+|...+...+..+.....+|+.|+|++|.
T Consensus 102 ~IeaVDAsds~I-------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSI-------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchH-------HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 356666666655 4445566667777777777777655444443333333444444444433
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.35 E-value=0.31 Score=36.18 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=54.7
Q ss_pred CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
|.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++.. +.++++|+.+.+.. ....++...+..+++|+.
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECE
T ss_pred CCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccc
Confidence 35788888874 356664 55888989999999875 6555443 56788899999976 334445443788999999
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEE
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVT 113 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 113 (325)
+.+..+ . .......+..+ +|+.+.+.
T Consensus 86 i~~~~~-~-------~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 86 IDIPSN-I-------TEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETTT---------BEEHTTTTTT--T--EEE-T
T ss_pred cccCcc-c-------cEEchhhhcCC-CceEEEEC
Confidence 999764 3 12223345555 77776654
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.14 E-value=0.1 Score=26.88 Aligned_cols=16 Identities=25% Similarity=0.850 Sum_probs=13.3
Q ss_pred CCCccEEeeeCCCCCC
Q 048462 266 FPSLQTISVNGCPSLR 281 (325)
Q Consensus 266 ~~~L~~L~l~~c~~l~ 281 (325)
+++|+.|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788888998888887
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.97 E-value=0.25 Score=25.26 Aligned_cols=18 Identities=50% Similarity=0.602 Sum_probs=10.2
Q ss_pred CCCcEEecCCCCCCCcCch
Q 048462 2 HALAVLDLSYNLDLVKLPE 20 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~ 20 (325)
++|++|++++| .++.+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45556666666 5555554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.97 E-value=0.25 Score=25.26 Aligned_cols=18 Identities=50% Similarity=0.602 Sum_probs=10.2
Q ss_pred CCCcEEecCCCCCCCcCch
Q 048462 2 HALAVLDLSYNLDLVKLPE 20 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~ 20 (325)
++|++|++++| .++.+|.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45556666666 5555554
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.61 E-value=0.21 Score=25.56 Aligned_cols=21 Identities=48% Similarity=0.689 Sum_probs=15.0
Q ss_pred cccCceecCCCCcccccChhh
Q 048462 25 LINLCYLNLSNTRIGQLPTGI 45 (325)
Q Consensus 25 l~~L~~L~l~~~~l~~lp~~l 45 (325)
+.+|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356778888888777777653
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.61 E-value=0.21 Score=25.56 Aligned_cols=21 Identities=48% Similarity=0.689 Sum_probs=15.0
Q ss_pred cccCceecCCCCcccccChhh
Q 048462 25 LINLCYLNLSNTRIGQLPTGI 45 (325)
Q Consensus 25 l~~L~~L~l~~~~l~~lp~~l 45 (325)
+.+|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356778888888777777653
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.74 E-value=0.052 Score=44.56 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=44.1
Q ss_pred hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462 22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 101 (325)
+..-+.-..||++.+.+..+-..++.+..|..|+++. +-...+|.. ++....+.+++..+|.. +..|.+.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d-~~q~~e~~~~~~~~n~~--------~~~p~s~ 107 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKD-AKQQRETVNAASHKNNH--------SQQPKSQ 107 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhh-HHHHHHHHHHHhhccch--------hhCCccc
Confidence 3344455555555555544444455555555566655 223344444 55555555555555543 3445555
Q ss_pred ccCCCcceEEEEecC
Q 048462 102 ESLENIHDISVTLCN 116 (325)
Q Consensus 102 ~~l~~L~~L~l~~~~ 116 (325)
+..++++.+...++.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 555555555555443
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.26 E-value=1.5 Score=22.56 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=8.7
Q ss_pred CCcEEecCCCCCCCcCch
Q 048462 3 ALAVLDLSYNLDLVKLPE 20 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~ 20 (325)
+|++|++++| .++.+|+
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 4555555555 4555543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.18 E-value=1.1 Score=22.36 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=5.4
Q ss_pred CcccEEEecccce
Q 048462 74 SSLQVFSWFSTEL 86 (325)
Q Consensus 74 ~~L~~L~l~~~~~ 86 (325)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555544
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.08 E-value=0.19 Score=41.36 Aligned_cols=82 Identities=24% Similarity=0.193 Sum_probs=52.9
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
+..++||++.+ ....+-..++.+..|..|+++.+.+..+|...+....+.+++... +.....|.. .+..+.++.++.
T Consensus 42 kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcchhhh
Confidence 34566777777 555555566666777777777766666777666666666666665 334455655 666666776666
Q ss_pred cccce
Q 048462 82 FSTEL 86 (325)
Q Consensus 82 ~~~~~ 86 (325)
..+.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66654
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.53 E-value=4.9 Score=20.93 Aligned_cols=14 Identities=50% Similarity=0.477 Sum_probs=8.8
Q ss_pred CCCcEEecCCCCCCC
Q 048462 2 HALAVLDLSYNLDLV 16 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~ 16 (325)
++|++|||++| .++
T Consensus 2 ~~L~~LdL~~N-~i~ 15 (28)
T smart00368 2 PSLRELDLSNN-KLG 15 (28)
T ss_pred CccCEEECCCC-CCC
Confidence 45677777777 444
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.32 E-value=3.4 Score=38.55 Aligned_cols=82 Identities=22% Similarity=0.130 Sum_probs=45.6
Q ss_pred cccccccEEEecCCCCCCcccccc----CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCc
Q 048462 181 YCFRNLRHLSVKTCPCMTDLKWIR----YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSL 256 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~~l~~l~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 256 (325)
.+++.+..++++++ ++..+..+. ..|+|+.|+|++|...-.-. +++ .--....|++|.+.|++--
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--------~el--~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--------SEL--DKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcch--------hhh--hhhcCCCHHHeeecCCccc
Confidence 45677888888877 566554332 36888888888872111100 000 1123444777888887554
Q ss_pred ceeccC-------cccCCCccEEe
Q 048462 257 TSICCG-------VVPFPSLQTIS 273 (325)
Q Consensus 257 ~~~~~~-------~~~~~~L~~L~ 273 (325)
+..... ...||+|..||
T Consensus 284 ~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cchhhhHHHHHHHHHhcchheeec
Confidence 433221 12477777765
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.19 E-value=6.8 Score=20.14 Aligned_cols=11 Identities=55% Similarity=0.561 Sum_probs=5.4
Q ss_pred CCCcEEecCCC
Q 048462 2 HALAVLDLSYN 12 (325)
Q Consensus 2 ~~L~~L~l~~~ 12 (325)
.+|+.|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 34455555555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.73 E-value=2.1 Score=39.85 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=54.6
Q ss_pred cCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCC-CCCccccccC--CCCccEEEEeccCCchhhcccC
Q 048462 151 RMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCP-CMTDLKWIRY--APNLQFLYVSYCPRLSEIIGTY 227 (325)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~ 227 (325)
+.+.+..+++++|....... ...+. ...|+|..|+|+++. .+.+..++.+ ...|++|.+.+|+..+....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~----~ssls-q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~-- 288 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA----LSSLS-QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSD-- 288 (585)
T ss_pred CCcceeeeecccchhhchhh----hhHHH-HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhh--
Confidence 45677778888877542211 01111 457889999998862 3333334443 45688899999988777654
Q ss_pred CCCCCCccccccccCCcccEEecc
Q 048462 228 ESPGTSEIEESQDFFSNLMVIDLR 251 (325)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~L~l~ 251 (325)
..+-+.+....||+|..||=.
T Consensus 289 ---~s~yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 289 ---RSEYVSAIRELFPKLLRLDGV 309 (585)
T ss_pred ---hHHHHHHHHHhcchheeecCc
Confidence 122222344578888887633
Done!