Query 048462
Match_columns 325
No_of_seqs 157 out of 2150
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.5E-24 8.7E-29 188.9 16.9 236 26-308 81-317 (328)
2 4fmz_A Internalin; leucine ric 99.9 8E-24 2.7E-28 187.1 19.2 249 1-284 65-327 (347)
3 2id5_A Lingo-1, leucine rich r 99.9 3E-23 1E-27 191.3 22.4 250 3-287 33-315 (477)
4 3o6n_A APL1; leucine-rich repe 99.9 1.8E-23 6.2E-28 187.9 19.2 45 238-284 290-334 (390)
5 1ogq_A PGIP-2, polygalacturona 99.9 6.1E-24 2.1E-28 185.3 12.2 251 2-285 50-309 (313)
6 3oja_B Anopheles plasmodium-re 99.9 5.2E-23 1.8E-27 194.8 18.6 250 2-284 75-340 (597)
7 3v47_A TOLL-like receptor 5B a 99.9 1.9E-22 6.6E-27 184.7 21.6 271 2-298 30-401 (455)
8 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5E-27 179.0 19.8 239 1-277 87-343 (347)
9 1o6v_A Internalin A; bacterial 99.9 5.7E-22 1.9E-26 182.2 22.9 248 2-284 68-325 (466)
10 4eco_A Uncharacterized protein 99.9 5.9E-23 2E-27 195.6 16.5 275 1-300 248-595 (636)
11 3o6n_A APL1; leucine-rich repe 99.9 2.6E-22 8.8E-27 180.4 18.6 244 1-277 68-349 (390)
12 4eco_A Uncharacterized protein 99.9 5.9E-23 2E-27 195.7 14.6 276 1-299 205-543 (636)
13 4ecn_A Leucine-rich repeat pro 99.9 4.5E-22 1.5E-26 193.8 18.9 270 1-300 514-835 (876)
14 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5E-26 179.5 21.0 264 1-299 89-382 (466)
15 2z7x_B TOLL-like receptor 1, v 99.9 3E-21 1E-25 179.8 23.1 112 181-296 345-472 (520)
16 3rgz_A Protein brassinosteroid 99.9 2E-22 6.8E-27 196.1 15.5 266 2-288 269-559 (768)
17 4ecn_A Leucine-rich repeat pro 99.9 2.3E-22 7.8E-27 195.9 15.1 276 1-299 447-783 (876)
18 2id5_A Lingo-1, leucine rich r 99.9 2.8E-21 9.5E-26 178.1 21.6 260 5-287 14-292 (477)
19 3oja_B Anopheles plasmodium-re 99.9 1.4E-21 4.7E-26 185.0 19.2 237 1-278 98-356 (597)
20 3t6q_A CD180 antigen; protein- 99.9 1.4E-21 4.8E-26 185.4 19.3 154 3-165 255-412 (606)
21 1xku_A Decorin; proteoglycan, 99.9 3.1E-21 1.1E-25 169.4 19.4 244 3-287 32-282 (330)
22 3t6q_A CD180 antigen; protein- 99.9 2.2E-21 7.6E-26 184.0 19.7 254 1-286 277-541 (606)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-20 4.5E-25 177.1 24.6 129 150-290 350-496 (562)
24 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-21 5.3E-26 185.1 18.3 262 1-298 284-551 (606)
25 3v47_A TOLL-like receptor 5B a 99.9 1.3E-21 4.6E-26 179.1 17.1 251 1-281 53-408 (455)
26 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-21 6.6E-26 184.4 18.6 111 1-120 55-168 (606)
27 1xku_A Decorin; proteoglycan, 99.9 5E-21 1.7E-25 168.1 19.8 242 2-278 52-304 (330)
28 3rgz_A Protein brassinosteroid 99.9 5.4E-22 1.9E-26 193.0 14.6 246 1-272 293-567 (768)
29 4fcg_A Uncharacterized protein 99.9 1.1E-21 3.9E-26 172.0 14.6 220 2-276 81-310 (328)
30 2z81_A CD282 antigen, TOLL-lik 99.9 3.3E-21 1.1E-25 180.7 18.6 44 240-286 448-491 (549)
31 2ft3_A Biglycan; proteoglycan, 99.9 2.8E-21 9.7E-26 169.8 15.6 242 2-279 54-306 (332)
32 1ogq_A PGIP-2, polygalacturona 99.9 6.6E-22 2.3E-26 172.4 10.5 223 1-258 75-306 (313)
33 2z66_A Variable lymphocyte rec 99.9 6E-21 2.1E-25 165.8 16.5 241 5-277 10-258 (306)
34 2z80_A TOLL-like receptor 2, v 99.9 8.9E-21 3.1E-25 168.0 17.8 244 2-277 52-311 (353)
35 3bz5_A Internalin-J, INLJ; leu 99.9 8.5E-21 2.9E-25 173.7 17.7 182 1-218 41-244 (457)
36 2z81_A CD282 antigen, TOLL-lik 99.9 9.3E-21 3.2E-25 177.6 18.1 106 2-116 26-134 (549)
37 2ft3_A Biglycan; proteoglycan, 99.9 7E-21 2.4E-25 167.3 16.2 242 3-286 34-282 (332)
38 1ziw_A TOLL-like receptor 3; i 99.9 3.2E-20 1.1E-24 178.4 21.3 106 3-117 26-133 (680)
39 2z7x_B TOLL-like receptor 1, v 99.9 5.8E-20 2E-24 171.1 21.4 104 2-117 21-127 (520)
40 2z63_A TOLL-like receptor 4, v 99.8 4.5E-20 1.6E-24 173.6 18.7 108 1-117 51-161 (570)
41 3bz5_A Internalin-J, INLJ; leu 99.8 8.4E-20 2.9E-24 167.1 19.4 168 19-218 35-202 (457)
42 2z80_A TOLL-like receptor 2, v 99.8 3.6E-20 1.2E-24 164.2 16.1 267 1-298 30-307 (353)
43 3zyi_A Leucine-rich repeat-con 99.8 4.6E-20 1.6E-24 168.9 17.0 222 2-254 75-301 (452)
44 3zyi_A Leucine-rich repeat-con 99.8 2E-19 6.8E-24 164.6 20.9 237 5-277 57-300 (452)
45 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4.1E-24 178.3 20.5 111 1-118 47-161 (844)
46 2z63_A TOLL-like receptor 4, v 99.8 8.7E-20 3E-24 171.7 18.7 84 1-86 75-161 (570)
47 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-19 5.6E-24 177.3 21.2 131 2-142 24-159 (844)
48 3zyj_A Leucine-rich repeat-con 99.8 6.6E-20 2.3E-24 167.2 17.0 222 2-254 64-290 (440)
49 3zyj_A Leucine-rich repeat-con 99.8 3E-19 1E-23 162.9 21.1 238 4-277 45-289 (440)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5E-19 1.7E-23 166.3 22.4 105 2-118 52-159 (562)
51 2z66_A Variable lymphocyte rec 99.8 9.4E-20 3.2E-24 158.2 15.5 221 2-254 28-259 (306)
52 3o53_A Protein LRIM1, AGAP0063 99.8 4.6E-20 1.6E-24 161.0 13.5 232 5-278 13-248 (317)
53 1ziw_A TOLL-like receptor 3; i 99.8 2.6E-19 8.8E-24 172.1 18.4 250 2-284 329-600 (680)
54 1ozn_A Reticulon 4 receptor; N 99.8 5.3E-20 1.8E-24 158.2 11.6 217 5-254 14-236 (285)
55 1h6u_A Internalin H; cell adhe 99.8 3.3E-19 1.1E-23 154.9 16.1 188 2-218 41-228 (308)
56 1ozn_A Reticulon 4 receptor; N 99.8 5.8E-19 2E-23 151.6 17.0 217 29-278 14-236 (285)
57 1jl5_A Outer protein YOPM; leu 99.8 1.5E-19 5E-24 165.3 12.0 242 2-287 11-276 (454)
58 3oja_A Leucine-rich immune mol 99.8 8.9E-19 3E-23 161.6 16.7 221 17-278 21-248 (487)
59 3o53_A Protein LRIM1, AGAP0063 99.8 3.4E-20 1.2E-24 161.9 6.6 240 2-284 34-279 (317)
60 3g06_A SSPH2 (leucine-rich rep 99.8 3E-18 1E-22 161.7 19.4 229 3-290 41-283 (622)
61 2ast_B S-phase kinase-associat 99.8 5.9E-20 2E-24 161.5 7.2 246 3-284 48-309 (336)
62 1wwl_A Monocyte differentiatio 99.8 5.7E-20 2E-24 160.1 6.2 246 22-300 39-304 (312)
63 1jl5_A Outer protein YOPM; leu 99.8 4.4E-18 1.5E-22 155.5 18.6 120 26-166 131-250 (454)
64 3rfs_A Internalin B, repeat mo 99.8 3.8E-18 1.3E-22 145.6 13.7 219 8-290 25-245 (272)
65 2xwt_C Thyrotropin receptor; s 99.8 5.2E-18 1.8E-22 141.9 13.9 208 14-279 22-238 (239)
66 2z62_A TOLL-like receptor 4, v 99.8 3.5E-18 1.2E-22 146.0 13.1 209 14-254 18-235 (276)
67 1wwl_A Monocyte differentiatio 99.8 5.8E-19 2E-23 153.7 8.3 218 4-254 65-307 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.8 1.4E-17 4.6E-22 157.3 18.1 218 2-278 61-295 (622)
69 2o6q_A Variable lymphocyte rec 99.8 3E-17 1E-21 139.8 17.1 172 3-217 17-191 (270)
70 2z62_A TOLL-like receptor 4, v 99.7 2.1E-17 7.2E-22 141.2 15.3 214 31-277 12-234 (276)
71 2ast_B S-phase kinase-associat 99.7 6E-19 2.1E-23 155.1 5.5 200 2-217 70-282 (336)
72 2ca6_A RAN GTPase-activating p 99.7 5E-19 1.7E-23 158.7 4.5 243 17-281 23-316 (386)
73 3oja_A Leucine-rich immune mol 99.7 1.4E-18 4.7E-23 160.3 7.2 231 2-275 34-270 (487)
74 1h6u_A Internalin H; cell adhe 99.7 2.1E-17 7.2E-22 143.5 14.0 170 22-218 37-206 (308)
75 4g8a_A TOLL-like receptor 4; l 99.7 1.6E-16 5.4E-21 151.1 19.4 115 182-310 467-592 (635)
76 2o6q_A Variable lymphocyte rec 99.7 9.5E-17 3.3E-21 136.7 15.7 177 2-219 37-217 (270)
77 1p9a_G Platelet glycoprotein I 99.7 1.9E-16 6.6E-21 136.2 16.8 195 24-254 8-206 (290)
78 2xwt_C Thyrotropin receptor; s 99.7 2.8E-17 9.5E-22 137.4 11.0 197 2-255 31-238 (239)
79 1h6t_A Internalin B; cell adhe 99.7 1E-16 3.5E-21 138.0 14.8 170 23-219 43-212 (291)
80 4ay9_X Follicle-stimulating ho 99.7 4.7E-16 1.6E-20 137.4 18.7 236 5-276 12-255 (350)
81 2ca6_A RAN GTPase-activating p 99.7 1E-18 3.5E-23 156.6 0.9 252 1-275 31-338 (386)
82 1p9a_G Platelet glycoprotein I 99.7 3.6E-16 1.2E-20 134.5 16.7 195 1-219 9-207 (290)
83 3rfs_A Internalin B, repeat mo 99.7 1.5E-17 5.1E-22 141.9 7.9 200 2-263 41-242 (272)
84 4glp_A Monocyte differentiatio 99.7 1E-17 3.5E-22 145.7 6.7 222 3-254 65-305 (310)
85 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.8E-23 159.9 0.2 156 2-165 3-182 (461)
86 4g8a_A TOLL-like receptor 4; l 99.7 1.4E-15 4.8E-20 144.5 20.8 114 3-118 53-186 (635)
87 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-18 6.2E-23 158.5 0.5 177 98-281 163-383 (461)
88 3ogk_B Coronatine-insensitive 99.7 2E-17 7E-22 156.2 7.3 258 1-282 191-527 (592)
89 3goz_A Leucine-rich repeat-con 99.7 7.6E-18 2.6E-22 149.7 2.5 78 7-86 3-92 (362)
90 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.7E-21 128.7 9.6 148 23-194 41-191 (197)
91 1m9s_A Internalin B; cell inva 99.7 5.2E-16 1.8E-20 146.2 13.2 171 22-219 39-209 (605)
92 4glp_A Monocyte differentiatio 99.7 1.5E-16 5.1E-21 138.3 8.8 217 26-277 64-304 (310)
93 3ogk_B Coronatine-insensitive 99.7 3.5E-17 1.2E-21 154.7 4.1 33 132-164 271-304 (592)
94 3m19_A Variable lymphocyte rec 99.6 2.2E-15 7.5E-20 126.9 14.5 173 3-218 15-190 (251)
95 4ay9_X Follicle-stimulating ho 99.6 1.6E-15 5.5E-20 134.0 14.0 218 2-252 30-255 (350)
96 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.9E-20 123.8 10.5 152 45-253 40-191 (197)
97 3goz_A Leucine-rich repeat-con 99.6 2.1E-16 7.1E-21 140.4 6.6 234 2-254 22-295 (362)
98 2p1m_B Transport inhibitor res 99.6 6.9E-16 2.3E-20 145.8 5.7 84 182-279 430-518 (594)
99 1xeu_A Internalin C; cellular 99.6 4.8E-15 1.6E-19 125.6 10.3 168 24-219 17-184 (263)
100 3m19_A Variable lymphocyte rec 99.6 2E-14 7E-19 120.9 12.8 153 2-194 35-189 (251)
101 3cvr_A Invasion plasmid antige 99.6 1.7E-14 6E-19 134.6 13.2 95 3-119 60-154 (571)
102 2p1m_B Transport inhibitor res 99.6 6.2E-16 2.1E-20 146.1 2.8 81 1-83 155-244 (594)
103 1h6t_A Internalin B; cell adhe 99.6 2.5E-14 8.5E-19 123.0 12.5 170 2-200 46-215 (291)
104 1m9s_A Internalin B; cell inva 99.5 1.8E-14 6.1E-19 135.8 11.4 189 25-254 20-208 (605)
105 1xeu_A Internalin C; cellular 99.5 5.2E-14 1.8E-18 119.2 10.3 167 4-200 21-187 (263)
106 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 112.8 11.7 103 5-118 10-113 (208)
107 1dce_A Protein (RAB geranylger 99.5 1.8E-16 6.2E-21 148.4 -5.9 204 23-274 346-567 (567)
108 2o6s_A Variable lymphocyte rec 99.5 8.4E-14 2.9E-18 113.6 9.2 109 2-119 28-138 (208)
109 3cvr_A Invasion plasmid antige 99.5 4.3E-13 1.5E-17 125.2 13.8 174 27-253 60-240 (571)
110 2v9t_B SLIT homolog 2 protein 99.5 4.1E-13 1.4E-17 110.6 11.6 148 5-194 14-162 (220)
111 3e6j_A Variable lymphocyte rec 99.4 5.7E-13 2E-17 110.4 11.7 147 5-194 22-169 (229)
112 2ell_A Acidic leucine-rich nuc 99.4 8.5E-14 2.9E-18 109.6 6.1 134 2-166 24-160 (168)
113 2xot_A Amphoterin-induced prot 99.4 3.4E-13 1.2E-17 119.5 10.4 173 5-218 21-200 (361)
114 2xot_A Amphoterin-induced prot 99.4 3.5E-13 1.2E-17 119.5 9.6 156 2-166 39-202 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.3E-12 4.4E-17 107.6 11.8 148 5-194 14-163 (220)
116 2je0_A Acidic leucine-rich nuc 99.4 1.4E-13 4.9E-18 106.0 5.3 109 2-120 17-128 (149)
117 2v9t_B SLIT homolog 2 protein 99.4 3.6E-12 1.2E-16 104.9 12.5 150 28-219 13-164 (220)
118 1w8a_A SLIT protein; signaling 99.4 1.8E-12 6E-17 104.4 9.8 127 5-166 11-139 (192)
119 3e6j_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 107.1 10.4 131 2-166 40-172 (229)
120 2wfh_A SLIT homolog 2 protein 99.4 4E-12 1.4E-16 102.4 10.9 127 5-166 13-139 (193)
121 1a9n_A U2A', U2A'; complex (nu 99.3 3.6E-12 1.2E-16 101.0 8.2 133 1-166 18-153 (176)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 4.1E-12 1.4E-16 104.5 8.8 131 2-143 32-165 (220)
123 2ell_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 100.3 7.6 138 24-201 22-163 (168)
124 1dce_A Protein (RAB geranylger 99.3 5.3E-12 1.8E-16 118.2 10.0 107 3-121 442-549 (567)
125 2wfh_A SLIT homolog 2 protein 99.3 9E-12 3.1E-16 100.3 9.7 108 2-118 31-139 (193)
126 1w8a_A SLIT protein; signaling 99.3 7.6E-12 2.6E-16 100.7 8.2 109 2-119 29-140 (192)
127 4b8c_D Glucose-repressible alc 99.2 1.4E-11 4.9E-16 118.7 8.0 108 1-119 223-330 (727)
128 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.9E-16 95.3 5.5 103 1-113 41-148 (149)
129 3sb4_A Hypothetical leucine ri 99.2 2.8E-11 9.7E-16 105.7 8.1 100 182-298 224-327 (329)
130 3sb4_A Hypothetical leucine ri 99.2 2.5E-10 8.6E-15 99.7 13.9 100 151-273 224-327 (329)
131 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5.1E-15 91.7 10.9 128 4-166 9-137 (177)
132 2o6r_A Variable lymphocyte rec 99.2 9.3E-11 3.2E-15 92.9 9.6 109 2-119 28-138 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.2 3.2E-11 1.1E-15 95.6 6.5 106 2-119 42-154 (176)
134 3g39_A Variable lymphocyte rec 99.1 1.4E-10 4.7E-15 91.3 8.4 104 4-118 11-115 (170)
135 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4E-17 106.0 -3.7 112 20-166 42-153 (198)
136 2r9u_A Variable lymphocyte rec 99.1 2E-10 7E-15 90.7 8.4 105 4-119 14-119 (174)
137 4b8c_D Glucose-repressible alc 99.1 1.2E-10 4E-15 112.3 8.2 91 19-119 217-307 (727)
138 1ds9_A Outer arm dynein; leuci 99.0 2.1E-11 7.3E-16 98.5 -0.4 107 1-119 47-154 (198)
139 2r9u_A Variable lymphocyte rec 98.9 2.1E-09 7.2E-14 84.8 8.2 83 2-86 33-117 (174)
140 3g39_A Variable lymphocyte rec 98.9 2.6E-09 8.9E-14 83.9 8.2 83 2-86 30-114 (170)
141 4fdw_A Leucine rich hypothetic 98.9 1.6E-07 5.3E-12 84.1 19.2 256 3-303 114-381 (401)
142 4fdw_A Leucine rich hypothetic 98.9 4.4E-07 1.5E-11 81.2 21.9 215 3-253 136-355 (401)
143 2ifg_A High affinity nerve gro 98.8 7.6E-09 2.6E-13 90.9 8.5 103 6-118 12-116 (347)
144 3un9_A NLR family member X1; l 98.8 8.9E-10 3E-14 97.8 1.6 163 2-199 72-253 (372)
145 3e4g_A ATP synthase subunit S, 98.7 8.6E-09 3E-13 80.5 4.2 85 185-281 62-153 (176)
146 2ra8_A Uncharacterized protein 98.7 2.6E-08 8.7E-13 87.8 6.8 15 70-84 168-182 (362)
147 3e4g_A ATP synthase subunit S, 98.6 2.2E-08 7.4E-13 78.2 4.3 66 182-258 83-154 (176)
148 3un9_A NLR family member X1; l 98.6 3.8E-09 1.3E-13 93.7 -1.0 82 132-219 156-251 (372)
149 2ifg_A High affinity nerve gro 98.5 2.3E-07 7.9E-12 81.3 7.7 82 2-86 31-115 (347)
150 2ra8_A Uncharacterized protein 98.5 9.7E-08 3.3E-12 84.1 5.2 63 205-277 250-317 (362)
151 4fs7_A Uncharacterized protein 98.3 6.1E-05 2.1E-09 67.1 19.3 53 1-56 70-124 (394)
152 1io0_A Tropomodulin; LRR prote 98.3 4.8E-07 1.6E-11 71.9 4.7 64 22-86 32-105 (185)
153 3rw6_A Nuclear RNA export fact 98.1 4E-06 1.4E-10 70.2 6.7 79 23-111 167-257 (267)
154 4fs7_A Uncharacterized protein 98.1 0.00014 4.8E-09 64.7 16.1 214 20-275 156-374 (394)
155 4gt6_A Cell surface protein; l 98.0 0.001 3.5E-08 59.1 19.9 142 4-161 66-213 (394)
156 1io0_A Tropomodulin; LRR prote 97.9 3.7E-06 1.3E-10 66.7 2.2 114 44-165 31-163 (185)
157 4gt6_A Cell surface protein; l 97.9 0.00092 3.1E-08 59.4 17.6 81 1-84 86-170 (394)
158 4h09_A Hypothetical leucine ri 97.6 0.012 3.9E-07 51.8 20.0 75 3-84 47-123 (379)
159 3rw6_A Nuclear RNA export fact 97.6 7.3E-05 2.5E-09 62.6 5.1 87 22-118 137-233 (267)
160 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0012 4E-08 52.4 4.3 36 25-60 69-109 (197)
161 4h09_A Hypothetical leucine ri 96.7 0.15 5.1E-06 44.6 18.2 76 1-83 68-144 (379)
162 3rfe_A Platelet glycoprotein I 95.6 0.018 6.2E-07 42.3 5.3 33 27-59 32-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.1 0.064 2.2E-06 42.4 5.0 83 2-86 70-169 (197)
164 3rfe_A Platelet glycoprotein I 93.7 0.085 2.9E-06 38.6 4.6 55 29-86 11-67 (130)
165 2lz0_A Uncharacterized protein 21.4 48 0.0016 22.4 2.0 37 45-83 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.5e-24 Score=188.88 Aligned_cols=236 Identities=17% Similarity=0.232 Sum_probs=140.5
Q ss_pred ccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCC
Q 048462 26 INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLE 105 (325)
Q Consensus 26 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 105 (325)
.++++|+++++.++.+|..+.++++|++|++++|.+. .+|.. +..+++|++|++++|.+ . .++..+..++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l-------~-~lp~~l~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPL-------R-ALPASIASLN 150 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCC-------C-CCCGGGGGCT
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCcc-------c-cCcHHHhcCc
Confidence 5666666666666666666666666666666665544 55655 66666666666666665 2 4555666666
Q ss_pred CcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccccc
Q 048462 106 NIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRN 185 (325)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
+|+.|++++|.....- +..+....+. ..+..+++|++|++++|....+ +..+ ..+++
T Consensus 151 ~L~~L~L~~n~~~~~~--------p~~~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~l------p~~l--~~l~~ 207 (328)
T 4fcg_A 151 RLRELSIRACPELTEL--------PEPLASTDAS-------GEHQGLVNLQSLRLEWTGIRSL------PASI--ANLQN 207 (328)
T ss_dssp TCCEEEEEEETTCCCC--------CSCSEEEC-C-------CCEEESTTCCEEEEEEECCCCC------CGGG--GGCTT
T ss_pred CCCEEECCCCCCcccc--------ChhHhhccch-------hhhccCCCCCEEECcCCCcCcc------hHhh--cCCCC
Confidence 6777776665433210 0001111000 1144566666666666654211 1111 44667
Q ss_pred ccEEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcc
Q 048462 186 LRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVV 264 (325)
Q Consensus 186 L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 264 (325)
|++|++++| .++.++ .+..+++|++|++++|.....+. ..++.+++|+.|++.+|.....++....
T Consensus 208 L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 208 LKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP------------PIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp CCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC------------CCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred CCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhH------------HHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 777777776 555543 45567777777777766544332 3566777777777777766677776666
Q ss_pred cCCCccEEeeeCCCCCCCCCCCCCCcccceeEEechHHHHhhcc
Q 048462 265 PFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGSREWWDRLE 308 (325)
Q Consensus 265 ~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~~~~~~~~~ 308 (325)
.+++|+.|++++|+.++.+|..+..+ ..+..+.......+.++
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLD 317 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC--
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHh
Confidence 77777777777777777777777666 56666666655544444
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8e-24 Score=187.15 Aligned_cols=249 Identities=15% Similarity=0.157 Sum_probs=141.8
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+++|++|++++| .++.++. +..+++|++|++++|.++.++ .+.++++|++|++++|... .++. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS-DISP--LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC-CCGG--GTTCTTCCEEE
T ss_pred cCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc-Cchh--hccCCceeEEE
Confidence 578889999988 7888766 888888888888888887775 4788888888888886543 3444 67788888888
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEE
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEI 160 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l 160 (325)
+++|.. . ..+..+..+++|+.|++.++.......+. ...+|+.|+++++....++.+..+++|+.+++
T Consensus 139 l~~n~~-------~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 139 LGANHN-------L-SDLSPLSNMTGLNYLTVTESKVKDVTPIA----NLTDLYSLSLNYNQIEDISPLASLTSLHYFTA 206 (347)
T ss_dssp CTTCTT-------C-CCCGGGTTCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCC-------c-ccccchhhCCCCcEEEecCCCcCCchhhc----cCCCCCEEEccCCcccccccccCCCccceeec
Confidence 888754 1 22333666777777777776655544322 22346666666555545555555666666666
Q ss_pred cCCCCceeccccCC--------------CCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhccc
Q 048462 161 DRCSLESKNDYFGD--------------QGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGT 226 (325)
Q Consensus 161 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~ 226 (325)
++|...+... +.. .+..+...+++|++|++++| .+++++.+..+++|++|++++|.. +.+
T Consensus 207 ~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~--- 280 (347)
T 4fmz_A 207 YVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDI--- 280 (347)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC---
T ss_pred ccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCC---
Confidence 6555421100 000 00000123444444444444 344444444444444444444421 111
Q ss_pred CCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462 227 YESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284 (325)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip 284 (325)
..+..+++|+.|++++|.-....+.....+++|+.|++++| .++.++
T Consensus 281 ----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~ 327 (347)
T 4fmz_A 281 ----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIR 327 (347)
T ss_dssp ----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCG
T ss_pred ----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-cccccc
Confidence 13455566666666665322222222334566666666666 355443
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=191.33 Aligned_cols=250 Identities=22% Similarity=0.255 Sum_probs=139.0
Q ss_pred CCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++++|++++| .++.+ |..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|...+.++++|++|+
T Consensus 33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEE
Confidence 4556666666 55544 34555566666666666655433 444555666666666554332 33332245555666666
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc------------
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL------------ 148 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~------------ 148 (325)
+++|.+ ....+..+..+++|+.|++.+|....+... ......+|+.|+++++....++.
T Consensus 111 Ls~n~i-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 111 ISENKI-------VILLDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTSCC-------CEECTTTTTTCTTCCEEEECCTTCCEECTT--SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCcc-------ccCChhHccccccCCEEECCCCccceeChh--hccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 655554 233333444555555555555443332110 00111234444444333333332
Q ss_pred --------------cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc--cccCCCCcc
Q 048462 149 --------------DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQ 210 (325)
Q Consensus 149 --------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~ 210 (325)
+..+++|+.|++++|.... .++. ....+|++|+++++ .++.++ .+..+++|+
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD---------TMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCC---------EECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCcccc---------ccCcccccCccccEEECcCC-cccccCHHHhcCccccC
Confidence 4445555555555544321 1111 12337777788777 677665 456788888
Q ss_pred EEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462 211 FLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCPSLRKLPLNS 287 (325)
Q Consensus 211 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~ip~~~ 287 (325)
.|++++|.. +.+.. ..+..+++|+.|++.++ .+..+ +.....+++|+.|++++| .++.+|...
T Consensus 252 ~L~Ls~n~l-~~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 252 FLNLSYNPI-STIEG-----------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp EEECCSSCC-CEECT-----------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred eeECCCCcC-CccCh-----------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence 888888863 33322 35678899999999987 55555 444556899999999988 888887643
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-23 Score=187.90 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=27.3
Q ss_pred ccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462 238 SQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284 (325)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip 284 (325)
....+++|+.|++++| .+..++.....+++|+.|++++| .++.+|
T Consensus 290 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 334 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK 334 (390)
T ss_dssp SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC
Confidence 3345666666666665 45555555555667777777666 455554
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=6.1e-24 Score=185.30 Aligned_cols=251 Identities=16% Similarity=0.195 Sum_probs=196.7
Q ss_pred CCCcEEecCCCCCCC---cCchhhhCcccCceecCCC-Ccc-cccChhhhccccCceeeccCCCCCeeechhhhhCCCcc
Q 048462 2 HALAVLDLSYNLDLV---KLPEAIGKLINLCYLNLSN-TRI-GQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSL 76 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~-~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 76 (325)
.+++.|+++++ .++ .+|..++.+++|++|++++ +.+ +.+|..+.++++|++|++++|.+.+.+|.. +.++++|
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence 46899999999 666 5899999999999999995 777 488999999999999999998888788887 9999999
Q ss_pred cEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccc-ccccccCccccCCceEEEEceeeee-cccc-cccCC
Q 048462 77 QVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA-VNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMD 153 (325)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~ 153 (325)
++|++++|.+ ....+..+..+++|++|++++|...+ ++.. ...+...|+.|+++++... .+|. +..++
T Consensus 128 ~~L~Ls~N~l-------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 128 VTLDFSYNAL-------SGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp CEEECCSSEE-------ESCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred CEEeCCCCcc-------CCcCChHHhcCCCCCeEECcCCcccCcCCHH--HhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 9999999998 55678889999999999999998763 2221 2223336899999966554 4454 77776
Q ss_pred CCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCC-ccccccCCCCccEEEEeccCCchhhcccCCCCCC
Q 048462 154 HLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMT-DLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT 232 (325)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 232 (325)
|+.|++++|...... +..+ ..+++|++|+++++ .++ .++.+..+++|++|++++|.....+
T Consensus 199 -L~~L~Ls~N~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------- 260 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDA-----SVLF--GSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTL--------- 260 (313)
T ss_dssp -CSEEECCSSEEEECC-----GGGC--CTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECC---------
T ss_pred -ccEEECcCCcccCcC-----CHHH--hcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcC---------
Confidence 999999998764211 1111 46889999999999 565 3566777899999999999753333
Q ss_pred CccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCC
Q 048462 233 SEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPL 285 (325)
Q Consensus 233 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~ 285 (325)
+..+..+++|++|++++|.-...+|.. ..+++|+.+++.+++.+...|.
T Consensus 261 ---p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 261 ---PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp ---CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred ---ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 347788999999999998433355554 6789999999999877765553
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.2e-23 Score=194.81 Aligned_cols=250 Identities=14% Similarity=0.142 Sum_probs=111.4
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.++ ..++.+++|++|++++|.++.+|.. ++++++|++|++++|.+. .+|...++++++|++|
T Consensus 75 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 75 RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEE
Confidence 45555555555 444443 3455555555555555555444332 355555555555554333 3333323555555555
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~ 159 (325)
++++|.+ ....+..+..+++|+.|++++|....+. . .....|+.|+++++.. ..+...++|+.|+
T Consensus 153 ~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~----~~l~~L~~L~l~~n~l---~~l~~~~~L~~L~ 217 (597)
T 3oja_B 153 SMSNNNL-------ERIEDDTFQATTSLQNLQLSSNRLTHVD-L----SLIPSLFHANVSYNLL---STLAIPIAVEELD 217 (597)
T ss_dssp ECCSSCC-------CBCCTTTTTTCTTCCEEECTTSCCSBCC-G----GGCTTCSEEECCSSCC---SEEECCTTCSEEE
T ss_pred EeeCCcC-------CCCChhhhhcCCcCcEEECcCCCCCCcC-h----hhhhhhhhhhcccCcc---ccccCCchhheee
Confidence 5555554 3333344555555555555555443321 0 0111233333332111 1111223334444
Q ss_pred EcCCCCceeccccC-----------C-CCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcc
Q 048462 160 IDRCSLESKNDYFG-----------D-QGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIG 225 (325)
Q Consensus 160 l~~~~~~~~~~~~~-----------~-~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~ 225 (325)
+++|.......... . .+......+++|++|+++++ .++.+ ..+..+++|+.|++++|.. ..
T Consensus 218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~--- 292 (597)
T 3oja_B 218 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VA--- 292 (597)
T ss_dssp CCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCC-CE---
T ss_pred ccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCC-CC---
Confidence 44333221100000 0 00000123444555555444 33332 1233445555555554431 11
Q ss_pred cCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462 226 TYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284 (325)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip 284 (325)
++.....+++|+.|++++| .+..++.....+++|+.|++++| .++.+|
T Consensus 293 ---------l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~ 340 (597)
T 3oja_B 293 ---------LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK 340 (597)
T ss_dssp ---------EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred ---------CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcC
Confidence 1224455667777777765 45555555555677777777766 455554
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.9e-22 Score=184.72 Aligned_cols=271 Identities=17% Similarity=0.216 Sum_probs=170.2
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccc-cc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIG-QL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~-~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
++|++|++++| .++.+ |..++++++|++|++++|.+. .+ +..+.++++|++|++++|.+....|.. +.++++|++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-FNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT-TTTCTTCCE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh-ccCcccCCE
Confidence 56889999998 77766 677888899999999888774 55 445788888999999887776666666 888888888
Q ss_pred EEecccceeeeeeccCccchhh--hccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cc----
Q 048462 79 FSWFSTELVELHYVDSTSVLAE--LESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DL---- 150 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~---- 150 (325)
|++++|.+ ....+.. +..+++|+.|++++|........... .....|+.|+++++.....+. +.
T Consensus 108 L~L~~n~l-------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 108 LTLTQCNL-------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp EECTTSCC-------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG-GGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred EeCCCCCC-------CccccCcccccCcccCCEEECCCCccCccCccccc-CCCCcccEEeCCCCcccccChhhhhcccc
Confidence 88888877 3333333 66777788887777766544221101 112346666666433221111 11
Q ss_pred ------------------------------cCCCCCeEEEcCCCCceecc------------------------------
Q 048462 151 ------------------------------RMDHLETLEIDRCSLESKND------------------------------ 170 (325)
Q Consensus 151 ------------------------------~l~~L~~L~l~~~~~~~~~~------------------------------ 170 (325)
.+++|++|++++|.......
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 22456666666664321000
Q ss_pred -----------------------ccCC-CCCccc--cccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchh
Q 048462 171 -----------------------YFGD-QGRTRT--YCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSE 222 (325)
Q Consensus 171 -----------------------~~~~-~~~~~~--~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~ 222 (325)
.... .+..+. ..+++|++|+++++ .++.+. .+..+++|++|++++|.. +.
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~ 337 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GS 337 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CC
Confidence 0000 000111 34566777777766 555542 455667777777777743 22
Q ss_pred hcccCCCCCCCccccccccCCcccEEeccCCCCccee-ccCcccCCCccEEeeeCCCCCCCCCCCC-CCcccceeEEe
Q 048462 223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI-CCGVVPFPSLQTISVNGCPSLRKLPLNS-GSAKNSLNAIR 298 (325)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~ip~~~-~~~~~~l~~~~ 298 (325)
+. +..++.+++|++|++++| .+..+ +.....+++|++|++++| +++.+|... ..+ ..+..+.
T Consensus 338 ~~-----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~ 401 (455)
T 3v47_A 338 ID-----------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL-TSLQKIW 401 (455)
T ss_dssp EC-----------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEE
T ss_pred cC-----------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccC-CcccEEE
Confidence 21 246678899999999998 56665 555667899999999987 788887654 333 4444443
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.5e-22 Score=179.01 Aligned_cols=239 Identities=16% Similarity=0.203 Sum_probs=175.8
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+++|++|++++| .++.++ .+..+++|++|++++|.+..++. +.++++|++|++++|......+. +..+++|++|+
T Consensus 87 l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~ 161 (347)
T 4fmz_A 87 LVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLT 161 (347)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEE
T ss_pred CCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEE
Confidence 578999999999 788875 58889999999999998887776 78889999999988766666555 77888888888
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccC------------------ccccCCceEEEEceee
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSS------------------PKLQSCIKRLAVVLMA 142 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~ 142 (325)
+.+|.+ .. .. .+..+++|+.|++++|....+..+... ......|++|+++++.
T Consensus 162 l~~~~~-------~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 162 VTESKV-------KD-VT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCSSCC-------CC-CG-GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ecCCCc-------CC-ch-hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence 888776 11 11 155566666666666654443321111 1122456777777666
Q ss_pred eecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchh
Q 048462 143 SFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSE 222 (325)
Q Consensus 143 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~ 222 (325)
...++.+..+++|++|++++|...+. -....+++|++|++++| .+++++.+..+++|++|++++|.....
T Consensus 233 l~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 233 ITDLSPLANLSQLTWLEIGTNQISDI---------NAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCC---------GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGG
T ss_pred cCCCcchhcCCCCCEEECCCCccCCC---------hhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCc
Confidence 65566667777777777777765321 11156889999999999 899888888999999999999974332
Q ss_pred hcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCC
Q 048462 223 IIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGC 277 (325)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 277 (325)
.. ..+..+++|+.|++++|+ +..++. ...+++|++|++++|
T Consensus 303 ~~------------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 303 DM------------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp GH------------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred Ch------------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 22 367889999999999984 666655 567999999999998
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=5.7e-22 Score=182.25 Aligned_cols=248 Identities=17% Similarity=0.201 Sum_probs=122.3
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++|++|++++| .++.+|. +..+++|++|++++|.+..++. +.++++|++|++++|... .++. +..+++|++|++
T Consensus 68 ~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEEC
Confidence 44555555555 4444443 5555555555555555544443 455555555555553322 2232 445555555555
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID 161 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~ 161 (325)
++|.+ .. ...+..+++|+.|++.+ .......+ .....|+.|+++++....++.+..+++|++|+++
T Consensus 142 ~~n~l-------~~--~~~~~~l~~L~~L~l~~-~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 142 SSNTI-------SD--ISALSGLTSLQQLSFGN-QVTDLKPL----ANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207 (466)
T ss_dssp EEEEE-------CC--CGGGTTCTTCSEEEEEE-SCCCCGGG----TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred CCCcc-------CC--ChhhccCCcccEeecCC-cccCchhh----ccCCCCCEEECcCCcCCCChhhccCCCCCEEEec
Confidence 55544 11 11244444444444432 11111111 1123466666665555555556666677777776
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCC----------C
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESP----------G 231 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----------~ 231 (325)
+|... +..+...+++|++|+++++ .+++++.+..+++|++|++++|... ......... .
T Consensus 208 ~n~l~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 208 NNQIS---------DITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQ 276 (466)
T ss_dssp SSCCC---------CCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSC
T ss_pred CCccc---------ccccccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCc
Confidence 66542 1112234556666666666 5555555555666666666655421 111000000 0
Q ss_pred CCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462 232 TSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLP 284 (325)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip 284 (325)
...++ .+..+++|+.|++.+| .+..++. ...+++|+.|++++| .++.++
T Consensus 277 l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~ 325 (466)
T 1o6v_A 277 ISNIS-PLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDIS 325 (466)
T ss_dssp CCCCG-GGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCG
T ss_pred cCccc-cccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCch
Confidence 01111 2456677777777776 4544444 445777888888777 555554
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.9e-23 Score=195.64 Aligned_cols=275 Identities=15% Similarity=0.167 Sum_probs=161.1
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCc-cc--ccChhhhcc------ccCceeeccCCCCCeeech--hh
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTR-IG--QLPTGITYL------KNLKILRLDGMRYLAFVPC--QV 69 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~--~lp~~l~~l------~~L~~L~l~~~~~~~~~~~--~~ 69 (325)
+++|++|++++|...+.+|..++++++|++|++++|. ++ .+|..+.++ ++|++|++++|.+. .+|. .
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~- 325 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS- 325 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-
Confidence 3566677777764444566666666777777776665 54 366666554 66666666665544 5555 4
Q ss_pred hhCCCcccEEEeccccee-ee------------ee--ccCccchhhhccCCC-cceEEEEecCcccccccccCcc-----
Q 048462 70 ISSLSSLQVFSWFSTELV-EL------------HY--VDSTSVLAELESLEN-IHDISVTLCNVDAVNRVKSSPK----- 128 (325)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~-~~------------~~--~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~----- 128 (325)
++++++|++|++++|.+. .. +. ..-..++..+..+++ |+.|++++|....++.......
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 666666666666666542 00 00 000134445666666 7777777766554433211110
Q ss_pred -------------------------ccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCccc-
Q 048462 129 -------------------------LQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT- 180 (325)
Q Consensus 129 -------------------------~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~- 180 (325)
...+|+.|+++++....+|. +..+++|+.|++++|...++.. ..+..
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~~~ 480 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK-----NSLKDE 480 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS-----SSSEET
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH-----HHhccc
Confidence 11235555555444444444 3346666666666665432110 11110
Q ss_pred ----cccccccEEEecCCCCCCcccc-cc--CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccC-
Q 048462 181 ----YCFRNLRHLSVKTCPCMTDLKW-IR--YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRH- 252 (325)
Q Consensus 181 ----~~~~~L~~L~l~~~~~l~~l~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~- 252 (325)
..+++|++|+++++ .++.++. +. .+++|++|++++|... . +|..+..+++|+.|++++
T Consensus 481 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~------------ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFS-K------------FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp TEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCS-S------------CCCGGGGCSSCCEEECCSC
T ss_pred cccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCC-C------------cChhhhcCCCCCEEECCCC
Confidence 12237888888888 6776653 33 6788888888887532 2 345777899999999964
Q ss_pred -----CCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEech
Q 048462 253 -----LPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGS 300 (325)
Q Consensus 253 -----~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~ 300 (325)
+.-...++.....+++|++|++++| .++.+|..+. ..+..++..
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~L~Ls 595 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT---PNISVLDIK 595 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---TTCCEEECC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh---CcCCEEECc
Confidence 3334566777777899999999988 6688987755 344444433
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.6e-22 Score=180.37 Aligned_cols=244 Identities=15% Similarity=0.153 Sum_probs=166.5
Q ss_pred CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+++|++|++++| .++.++ ..+..+++|++|++++|.++.++. .+.++++|++|++++|.+. .+|...+..+++|++
T Consensus 68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence 467888888888 677664 467888888888888888766644 4678888888888886544 555543577888888
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccc--cccC------------------------------
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNR--VKSS------------------------------ 126 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~------------------------------ 126 (325)
|++++|.+ ....+..+..+++|+.|++++|....+.. +...
T Consensus 146 L~L~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 146 LSMSNNNL-------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp EECCSSCC-------CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred EECCCCcc-------CccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 88888876 34445556777777777777776543210 0000
Q ss_pred ---ccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc-
Q 048462 127 ---PKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW- 202 (325)
Q Consensus 127 ---~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 202 (325)
......|+.|+++++.....+.+..+++|++|++++|...... +..+ ..+++|++|+++++ .++.++.
T Consensus 219 ~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~ 290 (390)
T 3o6n_A 219 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-----YHPF--VKMQRLERLYISNN-RLVALNLY 290 (390)
T ss_dssp EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-----SGGG--TTCSSCCEEECCSS-CCCEEECS
T ss_pred eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC-----hhHc--cccccCCEEECCCC-cCcccCcc
Confidence 0011235556666554445555777788888888888754221 1111 45788999999888 7777654
Q ss_pred ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCC
Q 048462 203 IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGC 277 (325)
Q Consensus 203 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 277 (325)
...+++|++|++++|. +..+ +..+..+++|+.|++.+| .+..++ ...+++|+.|+++++
T Consensus 291 ~~~l~~L~~L~L~~n~-l~~~------------~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNH-LLHV------------ERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp SSCCTTCCEEECCSSC-CCCC------------GGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred cCCCCCCCEEECCCCc-ceec------------CccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCC
Confidence 3468899999999885 3333 236678999999999998 566665 456899999999987
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=5.9e-23 Score=195.67 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=196.8
Q ss_pred CCCCcEEecCCCCCCCc------------------Cchhhh--CcccCceecCCCCcc-cccChhhhccccCceeeccCC
Q 048462 1 MHALAVLDLSYNLDLVK------------------LPEAIG--KLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGM 59 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~ 59 (325)
+++|++|++++| .++. +|+.++ ++++|++|++++|.+ +.+|..+.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 578999999999 6887 999999 999999999999986 689999999999999999998
Q ss_pred C-CCe-eechhhhhCC------CcccEEEecccceeeeeeccCccchh--hhccCCCcceEEEEecCcc-cccccccCcc
Q 048462 60 R-YLA-FVPCQVISSL------SSLQVFSWFSTELVELHYVDSTSVLA--ELESLENIHDISVTLCNVD-AVNRVKSSPK 128 (325)
Q Consensus 60 ~-~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~ 128 (325)
. +.+ .+|.. ++.+ ++|++|++++|.+ . .++. .+..+++|+.|++++|... .++.+ .
T Consensus 284 ~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l-------~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~----~ 350 (636)
T 4eco_A 284 RGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNL-------K-TFPVETSLQKMKKLGMLECLYNQLEGKLPAF----G 350 (636)
T ss_dssp TTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCC-------S-SCCCHHHHTTCTTCCEEECCSCCCEEECCCC----E
T ss_pred CCCccccchHH-HHhhhccccCCCCCEEECCCCcC-------C-ccCchhhhccCCCCCEEeCcCCcCccchhhh----C
Confidence 7 666 78877 7776 9999999999998 4 6777 8999999999999999877 44422 2
Q ss_pred ccCCceEEEEceeeeecccc-cccCCC-CCeEEEcCCCCceeccccCC----------------CCCccc--c-------
Q 048462 129 LQSCIKRLAVVLMASFLLPL-DLRMDH-LETLEIDRCSLESKNDYFGD----------------QGRTRT--Y------- 181 (325)
Q Consensus 129 ~~~~L~~L~l~~~~~~~l~~-l~~l~~-L~~L~l~~~~~~~~~~~~~~----------------~~~~~~--~------- 181 (325)
...+|+.|+++++....+|. +..+++ |+.|++++|...++...+.. .+..|. .
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 23458888888776667776 888888 99999988875422211100 000000 1
Q ss_pred ccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee
Q 048462 182 CFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI 259 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 259 (325)
.+++|++|+++++ .++.++. +..+++|++|++++|... .+..... .........+++|+.|++++| .++.+
T Consensus 431 ~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~----~~~~~~~~~l~~L~~L~Ls~N-~l~~l 503 (636)
T 4eco_A 431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL----KDENENFKNTYLLTSIDLRFN-KLTKL 503 (636)
T ss_dssp CCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS----EETTEECTTGGGCCEEECCSS-CCCBC
T ss_pred cCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh----ccccccccccCCccEEECcCC-cCCcc
Confidence 3346666666666 5555443 234667777777776532 3322000 000001223448999999987 66677
Q ss_pred ccCcc--cCCCccEEeeeCCCCCCCCCCCCCCcccceeEEec
Q 048462 260 CCGVV--PFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRG 299 (325)
Q Consensus 260 ~~~~~--~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~ 299 (325)
+.... .+++|+.|++++| .++.+|..+..+ ..++.++.
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l-~~L~~L~L 543 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNS-STLKGFGI 543 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGC-SSCCEEEC
T ss_pred ChhhhhccCCCcCEEECCCC-CCCCcChhhhcC-CCCCEEEC
Confidence 77665 7899999999887 777788877766 56666554
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=4.5e-22 Score=193.84 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=167.7
Q ss_pred CCCCcEEecCCCCCCCc--CchhhhCcc-------cCceecCCCCcccccCh--hhhccccCceeeccCCCCCeeechhh
Q 048462 1 MHALAVLDLSYNLDLVK--LPEAIGKLI-------NLCYLNLSNTRIGQLPT--GITYLKNLKILRLDGMRYLAFVPCQV 69 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~--lp~~~~~l~-------~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~ 69 (325)
|++|++|++++|..++. +|..++.+. +|++|++++|.+..+|. .+.++++|++|++++|.+. .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~- 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A- 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-
Confidence 35666677776621543 566555554 66666666666666666 6666666666666665544 555 3
Q ss_pred hhCCCcccEEEecccceeeeeeccCccchhhhccCCC-cceEEEEecCcccccccccCcc--------------------
Q 048462 70 ISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN-IHDISVTLCNVDAVNRVKSSPK-------------------- 128 (325)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~-------------------- 128 (325)
+..+++|+.|++++|.+ . .++..+..+++ |+.|++++|....++.......
T Consensus 591 ~~~L~~L~~L~Ls~N~l-------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQI-------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CCTTSEESEEECCSSCC-------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred hcCCCcceEEECcCCcc-------c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 66666666666666665 2 44555555655 6666666665443332211100
Q ss_pred --------ccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCcc-ccccccccEEEecCCCCC
Q 048462 129 --------LQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTR-TYCFRNLRHLSVKTCPCM 197 (325)
Q Consensus 129 --------~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l 197 (325)
...+|+.|+++++....+|. +..+++|+.|++++|....+..... ....+ ...+++|++|++++| ++
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL-KPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS-SCTTSCCTTGGGCCEEECCSS-CC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHh-ccccccccccCCccEEECCCC-CC
Confidence 01246777777665556665 3467888888888886542211000 00000 023448999999998 77
Q ss_pred Ccccc-cc--CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccC------CCCcceeccCcccCCC
Q 048462 198 TDLKW-IR--YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRH------LPSLTSICCGVVPFPS 268 (325)
Q Consensus 198 ~~l~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~ 268 (325)
+.++. +. .+++|+.|++++|.. +. ++..+..+++|+.|++++ |.-...++.....+++
T Consensus 741 ~~lp~~l~~~~l~~L~~L~Ls~N~L-~~------------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 741 TSLSDDFRATTLPYLSNMDVSYNCF-SS------------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CCCCGGGSTTTCTTCCEEECCSSCC-SS------------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccchHHhhhccCCCcCEEEeCCCCC-Cc------------cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 77763 33 688999999998863 22 335778899999999977 3334556767777999
Q ss_pred ccEEeeeCCCCCCCCCCCCCCcccceeEEech
Q 048462 269 LQTISVNGCPSLRKLPLNSGSAKNSLNAIRGS 300 (325)
Q Consensus 269 L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~ 300 (325)
|+.|++++| .++.+|..+. ..+..++..
T Consensus 808 L~~L~Ls~N-~L~~Ip~~l~---~~L~~LdLs 835 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEKLT---PQLYILDIA 835 (876)
T ss_dssp CCEEECCSS-CCCBCCSCCC---SSSCEEECC
T ss_pred CCEEECCCC-CCCccCHhhc---CCCCEEECC
Confidence 999999998 6688998765 244444433
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.5e-21 Score=179.49 Aligned_cols=264 Identities=13% Similarity=0.177 Sum_probs=143.9
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeech-------------
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPC------------- 67 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~------------- 67 (325)
+++|++|++++| .+..++. +..+++|++|++++|.++.++. +.++++|++|++++|.+.. ++.
T Consensus 89 l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 89 LTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG 164 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE
T ss_pred cccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC
Confidence 468889999988 7777766 8888999999998888877765 7888888888888864332 332
Q ss_pred -------hhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEce
Q 048462 68 -------QVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVL 140 (325)
Q Consensus 68 -------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 140 (325)
. +.++++|++|++++|.+ .. ...+..+++|+.|++++|.......+. ...+|+.|++++
T Consensus 165 ~~~~~~~~-~~~l~~L~~L~l~~n~l-------~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~ 230 (466)
T 1o6v_A 165 NQVTDLKP-LANLTTLERLDISSNKV-------SD--ISVLAKLTNLESLIATNNQISDITPLG----ILTNLDELSLNG 230 (466)
T ss_dssp ESCCCCGG-GTTCTTCCEEECCSSCC-------CC--CGGGGGCTTCSEEECCSSCCCCCGGGG----GCTTCCEEECCS
T ss_pred CcccCchh-hccCCCCCEEECcCCcC-------CC--ChhhccCCCCCEEEecCCccccccccc----ccCCCCEEECCC
Confidence 1 34445555555555544 11 123555566666666666544433211 123466666665
Q ss_pred eeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCc
Q 048462 141 MASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRL 220 (325)
Q Consensus 141 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l 220 (325)
+....++.+..+++|+.|++++|..... .+...+++|++|+++++ .++.++.+..+++|++|++++|..
T Consensus 231 n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l- 299 (466)
T 1o6v_A 231 NQLKDIGTLASLTNLTDLDLANNQISNL---------APLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQL- 299 (466)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-
T ss_pred CCcccchhhhcCCCCCEEECCCCccccc---------hhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCcc-
Confidence 5554555566666666666666654211 11133444555555444 344443344444444444444431
Q ss_pred hhhcccCCCC----------CCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCc
Q 048462 221 SEIIGTYESP----------GTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSA 290 (325)
Q Consensus 221 ~~~~~~~~~~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~ 290 (325)
+.+....... ...+.+ .+..+++|+.|++.+| .+..++ ....+++|+.|++++| .++.+++ +..+
T Consensus 300 ~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~~l 374 (466)
T 1o6v_A 300 EDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP-LANL 374 (466)
T ss_dssp SCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGG-GTTC
T ss_pred cCchhhcCCCCCCEEECcCCcCCCch-hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccch-hhcC
Confidence 1110000000 000011 2456677777777776 444443 2345777788888776 4554443 3333
Q ss_pred ccceeEEec
Q 048462 291 KNSLNAIRG 299 (325)
Q Consensus 291 ~~~l~~~~~ 299 (325)
..+..+..
T Consensus 375 -~~L~~L~l 382 (466)
T 1o6v_A 375 -TRITQLGL 382 (466)
T ss_dssp -TTCCEEEC
T ss_pred -CCCCEEec
Confidence 34444443
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=179.77 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=64.2
Q ss_pred cccccccEEEecCCCCCCccc----cccCCCCccEEEEeccCCchhhcccCCC----C-----CCCcc-ccccccC-Ccc
Q 048462 181 YCFRNLRHLSVKTCPCMTDLK----WIRYAPNLQFLYVSYCPRLSEIIGTYES----P-----GTSEI-EESQDFF-SNL 245 (325)
Q Consensus 181 ~~~~~L~~L~l~~~~~l~~l~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~-----~~~~~-~~~~~~~-~~L 245 (325)
..+++|++|+++++ .++.++ .+..+++|++|++++|.....+...... . ..-.+ ......+ ++|
T Consensus 345 ~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L 423 (520)
T 2z7x_B 345 GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423 (520)
T ss_dssp CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTC
T ss_pred ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccC
Confidence 34566666766666 555432 2455677777777766543323221000 0 00000 0011122 578
Q ss_pred cEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC-CCCcccceeE
Q 048462 246 MVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN-SGSAKNSLNA 296 (325)
Q Consensus 246 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~-~~~~~~~l~~ 296 (325)
+.|++++| .++.++.....+++|++|++++| +++.+|.. +..+ ..+..
T Consensus 424 ~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~ 472 (520)
T 2z7x_B 424 KVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL-TSLQK 472 (520)
T ss_dssp CEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCE
T ss_pred CEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC-CcccE
Confidence 88888887 66677776668899999999988 88888876 4443 34443
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=2e-22 Score=196.10 Aligned_cols=266 Identities=17% Similarity=0.162 Sum_probs=127.9
Q ss_pred CCCcEEecCCCCCCC-cCchhhhC-cccCceecCCCCccc-ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLV-KLPEAIGK-LINLCYLNLSNTRIG-QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~-~lp~~~~~-l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
++|++|++++| .++ .+|..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|...+..+++|++
T Consensus 269 ~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 269 KSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp TTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 34444455444 233 44444444 256666666666553 555555666666666666655554555433555666666
Q ss_pred EEecccceeeeeeccCccchhhhccCC-CcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc-cccCCCC
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLE-NIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL-DLRMDHL 155 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~-l~~l~~L 155 (325)
|++++|.+ ....+..+..++ +|+.|++++|...+.............|+.|+++++... .+|. +..+++|
T Consensus 348 L~Ls~n~l-------~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 348 LDLSFNEF-------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp EECCSSEE-------EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred EeCcCCcc-------CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 66666655 334444444444 555555555543321000000011234566666644433 3333 5566666
Q ss_pred CeEEEcCCCCcee-ccccCC--------------CCCccc--cccccccEEEecCCCCCCc-cc-cccCCCCccEEEEec
Q 048462 156 ETLEIDRCSLESK-NDYFGD--------------QGRTRT--YCFRNLRHLSVKTCPCMTD-LK-WIRYAPNLQFLYVSY 216 (325)
Q Consensus 156 ~~L~l~~~~~~~~-~~~~~~--------------~~~~~~--~~~~~L~~L~l~~~~~l~~-l~-~~~~~~~L~~L~l~~ 216 (325)
+.|++++|..... ...+.. .+.+|. ..+++|++|++++| .++. ++ .+..+++|++|++++
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCS
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccC
Confidence 6666666643210 000000 111111 23444444444444 3331 21 233445555555555
Q ss_pred cCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCC
Q 048462 217 CPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSG 288 (325)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~ 288 (325)
|.... .+|.+++.+++|++|++++|.-...++.....+++|+.|++++|+-...+|..+.
T Consensus 500 N~l~~------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 500 NRLTG------------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCS------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CccCC------------cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 44221 2234556666666666666644445555555666677777766643335665443
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2.3e-22 Score=195.91 Aligned_cols=276 Identities=17% Similarity=0.146 Sum_probs=186.3
Q ss_pred CCCCcEEecCCCCCCCc------------------Cchhhh--CcccCceecCCCCcc-cccChhhhccccCceeeccCC
Q 048462 1 MHALAVLDLSYNLDLVK------------------LPEAIG--KLINLCYLNLSNTRI-GQLPTGITYLKNLKILRLDGM 59 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~------------------lp~~~~--~l~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~l~~~ 59 (325)
|++|++|+|++| .++. +|+.++ ++++|++|++++|.+ +.+|..+.++++|++|++++|
T Consensus 447 L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 468889999998 6776 888877 889999999988875 688888888999999999887
Q ss_pred C-CCe-eechhhhhCCC-------cccEEEecccceeeeeeccCccchh--hhccCCCcceEEEEecCcccccccccCcc
Q 048462 60 R-YLA-FVPCQVISSLS-------SLQVFSWFSTELVELHYVDSTSVLA--ELESLENIHDISVTLCNVDAVNRVKSSPK 128 (325)
Q Consensus 60 ~-~~~-~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 128 (325)
. +.+ .+|.. +..++ +|++|++++|.+ . .++. .+..+++|+.|++++|....++.+ .
T Consensus 526 ~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L-------~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~----~ 592 (876)
T 4ecn_A 526 RGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNL-------E-EFPASASLQKMVKLGLLDCVHNKVRHLEAF----G 592 (876)
T ss_dssp TTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCC-------C-BCCCHHHHTTCTTCCEEECTTSCCCBCCCC----C
T ss_pred CCcccccchHH-HHhhhhcccccCCccEEEeeCCcC-------C-ccCChhhhhcCCCCCEEECCCCCcccchhh----c
Confidence 6 555 57765 55554 888888888887 3 5666 788888888888888877655422 2
Q ss_pred ccCCceEEEEceeeeecccc-cccCCC-CCeEEEcCCCCceeccccCC----------------CCCccc-------ccc
Q 048462 129 LQSCIKRLAVVLMASFLLPL-DLRMDH-LETLEIDRCSLESKNDYFGD----------------QGRTRT-------YCF 183 (325)
Q Consensus 129 ~~~~L~~L~l~~~~~~~l~~-l~~l~~-L~~L~l~~~~~~~~~~~~~~----------------~~~~~~-------~~~ 183 (325)
...+|+.|+++++....+|. +..+++ |+.|++++|....+...+.. .+.+|. ...
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 23457888888666556665 777777 88888888765422111000 000010 123
Q ss_pred ccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceecc
Q 048462 184 RNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICC 261 (325)
Q Consensus 184 ~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 261 (325)
++|+.|++++| .++.++. +..+++|+.|++++|.. ..+...... .......++++|+.|++++| .+..++.
T Consensus 673 ~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~----~~~~~l~nl~~L~~L~Ls~N-~L~~lp~ 745 (876)
T 4ecn_A 673 INASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLM-TSIPENSLK----PKDGNYKNTYLLTTIDLRFN-KLTSLSD 745 (876)
T ss_dssp CCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSS----CTTSCCTTGGGCCEEECCSS-CCCCCCG
T ss_pred CCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcC-CccChHHhc----cccccccccCCccEEECCCC-CCccchH
Confidence 36777777776 5655542 23567788888877743 333321000 00011234558999999998 6777877
Q ss_pred Ccc--cCCCccEEeeeCCCCCCCCCCCCCCcccceeEEec
Q 048462 262 GVV--PFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRG 299 (325)
Q Consensus 262 ~~~--~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~ 299 (325)
... .+++|+.|++++| .++.+|..+..+ ..+..+..
T Consensus 746 ~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L-~~L~~L~L 783 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYN-CFSSFPTQPLNS-SQLKAFGI 783 (876)
T ss_dssp GGSTTTCTTCCEEECCSS-CCSSCCCGGGGC-TTCCEEEC
T ss_pred HhhhccCCCcCEEEeCCC-CCCccchhhhcC-CCCCEEEC
Confidence 765 7899999999887 788888877766 56666544
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.8e-21 Score=178.15 Aligned_cols=260 Identities=18% Similarity=0.192 Sum_probs=184.4
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+.++.+++ .++.+|..+. .++++|++++|.++.+ +..+.++++|++|++++|.+....|.. +.++++|++|++++
T Consensus 14 ~~v~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSC-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCC
Confidence 56777777 7888887664 6899999999999876 457899999999999998776666766 99999999999999
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc--ccccCCCCCeEEEc
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP--LDLRMDHLETLEID 161 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~l~~l~~L~~L~l~ 161 (325)
|.+ .......+..+++|+.|++++|........ ......+|+.|+++++....++ .+..+++|+.|+++
T Consensus 90 n~l-------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 90 NRL-------KLIPLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp SCC-------CSCCTTSSTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred CcC-------CccCcccccCCCCCCEEECCCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 987 444445578899999999999987655321 1123346999999976554443 38899999999999
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCC---------
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESP--------- 230 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--------- 230 (325)
+|....... .. ...+++|+.|+++++ .+..++ .+..+++|++|++++|..+..+.......
T Consensus 161 ~n~l~~~~~-----~~--l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 161 KCNLTSIPT-----EA--LSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp SCCCSSCCH-----HH--HTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCcCcccCh-----hH--hcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 997642110 00 145678888888887 566543 35567777777777776544433211000
Q ss_pred --CCCccc-cccccCCcccEEeccCCCCcceeccC-cccCCCccEEeeeCCCCCCCC-CCCC
Q 048462 231 --GTSEIE-ESQDFFSNLMVIDLRHLPSLTSICCG-VVPFPSLQTISVNGCPSLRKL-PLNS 287 (325)
Q Consensus 231 --~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~i-p~~~ 287 (325)
....++ ..+..+++|+.|+++++ .+..++.. ...+++|+.|++++| .++.+ |..+
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 292 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAF 292 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTB
T ss_pred CCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHh
Confidence 111222 24567889999999987 46666543 456889999999887 66654 4343
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.4e-21 Score=185.04 Aligned_cols=237 Identities=18% Similarity=0.206 Sum_probs=181.0
Q ss_pred CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhh-hccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+++|++|++++| .++.+| ..++.+++|++|++++|.++.+|..+ .++++|++|++++|.+....|.. +..+++|++
T Consensus 98 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 175 (597)
T 3oja_B 98 AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQN 175 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCE
T ss_pred CCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcE
Confidence 578999999999 788775 55799999999999999999888874 89999999999998777666656 899999999
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEec-------------------CcccccccccCccccCCceEEEEc
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLC-------------------NVDAVNRVKSSPKLQSCIKRLAVV 139 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~~L~~L~l~ 139 (325)
|++++|.+ ... .+..+++|+.|++.+| ....++.. ...+|+.|+++
T Consensus 176 L~L~~N~l-------~~~---~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~ 240 (597)
T 3oja_B 176 LQLSSNRL-------THV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQ 240 (597)
T ss_dssp EECTTSCC-------SBC---CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECC
T ss_pred EECcCCCC-------CCc---ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc-----cCCCCCEEECC
Confidence 99999987 221 1334455555555444 43333221 12358888888
Q ss_pred eeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccc-cCCCCccEEEEeccC
Q 048462 140 LMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWI-RYAPNLQFLYVSYCP 218 (325)
Q Consensus 140 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~ 218 (325)
++.....+.+..+++|+.|++++|...... +..+ ..+++|++|+++++ .++.++.. ..+++|+.|++++|.
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-----~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIM-----YHPF--VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCEEE-----SGGG--TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred CCCCCCChhhccCCCCCEEECCCCccCCCC-----HHHh--cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC
Confidence 776666677889999999999999864221 1111 46899999999999 78887643 458999999999996
Q ss_pred CchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462 219 RLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP 278 (325)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 278 (325)
. ..+ +..+..+++|+.|++++| .+..++ ...+++|+.|++++++
T Consensus 313 l-~~i------------~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 L-LHV------------ERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp C-CCC------------GGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred C-Ccc------------CcccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 4 233 346788999999999998 566554 4468999999999874
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.4e-21 Score=185.36 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=81.9
Q ss_pred CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
.|++|++++| .++.++ ..++.+++|++|++++|.++++|..+.++++|++|++++|.+....|.. +..+++|++|++
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEEC
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEEC
Confidence 4566666666 555553 3366666666666666666666666666666666666665544443434 566666666666
Q ss_pred cccceeeeeeccCccc-hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc--ccccCCCCCeE
Q 048462 82 FSTELVELHYVDSTSV-LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP--LDLRMDHLETL 158 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~l~~l~~L~~L 158 (325)
++|.+ .... ...+..+++|+.|++++|................+|+.|+++++....++ .+..+++|++|
T Consensus 333 ~~n~~-------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 333 KGNTK-------RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp CSCSS-------CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CCCCc-------ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 66654 2122 22355556666666665554443211111222234555555544332221 14555555555
Q ss_pred EEcCCCC
Q 048462 159 EIDRCSL 165 (325)
Q Consensus 159 ~l~~~~~ 165 (325)
++++|..
T Consensus 406 ~l~~n~l 412 (606)
T 3t6q_A 406 DLAFTRL 412 (606)
T ss_dssp ECTTCCE
T ss_pred ECCCCcC
Confidence 5555543
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.1e-21 Score=169.41 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=182.3
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++++++++++ .++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+....|.. +.++++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEEC
Confidence 6788999988 7888886554 688999999998887765 5788999999999997766655666 888999999999
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee----cccccccCCCCCe
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF----LLPLDLRMDHLET 157 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~l~~l~~L~~ 157 (325)
++|.+ ..++..+. ++|+.|++++|....+.... ......|+.|+++++... ....+..+++|++
T Consensus 108 s~n~l--------~~l~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 108 SKNQL--------KELPEKMP--KTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CSSCC--------SBCCSSCC--TTCCEEECCSSCCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCcC--------CccChhhc--ccccEEECCCCcccccCHhH--hcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 99887 23333333 78999999888776543311 112345888988865442 2223788999999
Q ss_pred EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCcc
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 235 (325)
|++++|...+ +|...+++|++|+++++ .++.+ ..+..+++|++|++++|.. +.+..
T Consensus 176 L~l~~n~l~~----------l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~---------- 233 (330)
T 1xku_A 176 IRIADTNITT----------IPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSI-SAVDN---------- 233 (330)
T ss_dssp EECCSSCCCS----------CCSSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCC-CEECT----------
T ss_pred EECCCCcccc----------CCccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-ceeCh----------
Confidence 9999988642 23333478999999998 67765 3577889999999999863 32221
Q ss_pred ccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462 236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS 287 (325)
Q Consensus 236 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~ 287 (325)
..+..+++|+.|++++| .+..++.....+++|++|++++| .++.+|...
T Consensus 234 -~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~ 282 (330)
T 1xku_A 234 -GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSND 282 (330)
T ss_dssp -TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred -hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhh
Confidence 35678899999999998 67788777778899999999887 788877543
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.2e-21 Score=183.98 Aligned_cols=254 Identities=16% Similarity=0.181 Sum_probs=196.9
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+++|++|++++| .++.+|..+..+++|++|++++|.++.+ |..+.++++|++|++++|.....++...+..+++|++|
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 478999999999 8999999999999999999999999765 55789999999999999888777775548899999999
Q ss_pred EecccceeeeeeccCccc--hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecc--cc-cccCCC
Q 048462 80 SWFSTELVELHYVDSTSV--LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLL--PL-DLRMDH 154 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~~-l~~l~~ 154 (325)
++++|.+ .... +..+..+++|+.|++++|........ .......|+.|+++++..... +. +..+++
T Consensus 356 ~l~~n~l-------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 356 DLSHDDI-------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE--AFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp ECCSSCC-------CEEEESTTTTTTCTTCCEEECCSCSCEEECTT--TTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred ECCCCcc-------ccccCcchhcccCCCCCEEECCCCcCCcCCHH--HhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 9999987 3332 56788999999999999986654221 122234699999997665433 33 788999
Q ss_pred CCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc-----ccccCCCCccEEEEeccCCchhhcccCCC
Q 048462 155 LETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL-----KWIRYAPNLQFLYVSYCPRLSEIIGTYES 229 (325)
Q Consensus 155 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 229 (325)
|+.|++++|...... +..+ ..+++|++|+++++ .++.. ..+..+++|++|++++|.. +.+.
T Consensus 427 L~~L~l~~n~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~----- 492 (606)
T 3t6q_A 427 LKVLNLSHSLLDISS-----EQLF--DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSID----- 492 (606)
T ss_dssp CCEEECTTCCCBTTC-----TTTT--TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCC-CEEC-----
T ss_pred CCEEECCCCccCCcC-----HHHH--hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCcc-CccC-----
Confidence 999999999864111 1111 46899999999999 66652 3467799999999999964 3332
Q ss_pred CCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462 230 PGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN 286 (325)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~ 286 (325)
+..++.+++|+.|++++|.-....+.....++.| .|++++| +++.+|+.
T Consensus 493 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~ 541 (606)
T 3t6q_A 493 ------QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPS 541 (606)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGG
T ss_pred ------hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHh
Confidence 2467889999999999984333445555668889 9999998 77766543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.3e-20 Score=177.14 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=74.5
Q ss_pred ccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc----cccCCCCccEEEEeccCCchhh
Q 048462 150 LRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK----WIRYAPNLQFLYVSYCPRLSEI 223 (325)
Q Consensus 150 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~----~~~~~~~L~~L~l~~~~~l~~~ 223 (325)
..+++|++|++++|... +..+. ..+++|++|+++++ .++.++ .+..+++|++|++++|.....+
T Consensus 350 ~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT---------DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCEEECCSSCCC---------TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred cCCCCceEEECCCCccc---------cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 34455566666555542 11111 45667777777776 566543 2456677777777776543212
Q ss_pred cccCCC----C-----CCCcc-ccccccC-CcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC-CCCc
Q 048462 224 IGTYES----P-----GTSEI-EESQDFF-SNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN-SGSA 290 (325)
Q Consensus 224 ~~~~~~----~-----~~~~~-~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~-~~~~ 290 (325)
...... . ..-.+ ......+ ++|+.|++++| .++.++.....+++|++|++++| +++.+|.. +..+
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 496 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL 496 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence 211000 0 00000 0111223 68888888887 77788877778899999999887 78888876 4444
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.5e-21 Score=185.06 Aligned_cols=262 Identities=16% Similarity=0.097 Sum_probs=197.3
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+++|+.|+++++ .++.+| .+..+++|++|++++|.++.+| .+ .+++|++|++++|...... . +..+++|++|+
T Consensus 284 l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ 356 (606)
T 3vq2_A 284 LANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLD 356 (606)
T ss_dssp GTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEE
T ss_pred CCCCCEEEecCc-cchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--h-hccCCCCCEEE
Confidence 367899999999 788888 7888999999999999988888 45 9999999999998666655 2 67899999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc---ccccCCCCCe
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP---LDLRMDHLET 157 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~---~l~~l~~L~~ 157 (325)
+++|.+. .....+..+..+++|+.|++++|....++. ......+|+.|+++++.....+ .+..+++|+.
T Consensus 357 ls~n~l~-----~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 357 LSRNALS-----FSGCCSYSDLGTNSLRHLDLSFNGAIIMSA---NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CCSSCEE-----EEEECCHHHHCCSCCCEEECCSCSEEEECC---CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CcCCccC-----CCcchhhhhccCCcccEeECCCCccccchh---hccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 9999871 111136778889999999999998766542 2223356899999977665443 4788999999
Q ss_pred EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc--cc-cccCCCCccEEEEeccCCchhhcccCCCCCCCc
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD--LK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSE 234 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 234 (325)
|++++|...... +..+ ..+++|++|++++| .++. ++ .+..+++|++|++++|... .+.
T Consensus 429 L~l~~n~l~~~~-----~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~---------- 489 (606)
T 3vq2_A 429 LDISYTNTKIDF-----DGIF--LGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLE-QIS---------- 489 (606)
T ss_dssp EECTTSCCEECC-----TTTT--TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCC-EEC----------
T ss_pred EECcCCCCCccc-----hhhh--cCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCC-ccC----------
Confidence 999999864211 1111 46789999999999 6665 33 4678899999999999643 222
Q ss_pred cccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEe
Q 048462 235 IEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIR 298 (325)
Q Consensus 235 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~ 298 (325)
+..+..+++|++|++++|.-....+.....+++|++|++++| +++.+|..+......+..++
T Consensus 490 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 490 -WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred -hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence 236788999999999998433334666667899999999988 68888887655532344443
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.3e-21 Score=179.10 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=160.7
Q ss_pred CCCCcEEecCCCCCCC-cC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeec-hhhhhCCCcc
Q 048462 1 MHALAVLDLSYNLDLV-KL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVP-CQVISSLSSL 76 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~-~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L 76 (325)
|++|++|++++| .+. .+ +..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+.+..+ ...+..+++|
T Consensus 53 l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 53 LQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp CTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred CccccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 467778888877 443 44 45577777788888877777544 5667777777777777766554322 1125667777
Q ss_pred cEEEecccceeeeeeccCccchhh-hccCCCcceEEEEecCccccccc--ccC---------------------------
Q 048462 77 QVFSWFSTELVELHYVDSTSVLAE-LESLENIHDISVTLCNVDAVNRV--KSS--------------------------- 126 (325)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~--~~~--------------------------- 126 (325)
++|++++|.+ ....+.. +..+++|+.|++++|........ ...
T Consensus 132 ~~L~L~~n~l-------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 132 EMLVLRDNNI-------KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp CEEECCSSBC-------CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred CEEECCCCcc-------CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 7777777766 3333333 55666666666666654332110 000
Q ss_pred ---ccccC---------------------------------------------------------------CceEEEEce
Q 048462 127 ---PKLQS---------------------------------------------------------------CIKRLAVVL 140 (325)
Q Consensus 127 ---~~~~~---------------------------------------------------------------~L~~L~l~~ 140 (325)
..... .|+.|++++
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 00001 234444443
Q ss_pred eeeecc-cc-cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEec
Q 048462 141 MASFLL-PL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSY 216 (325)
Q Consensus 141 ~~~~~l-~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~ 216 (325)
+....+ +. +..+++|++|++++|...+.. +..+ ..+++|++|+++++ .++.+. .+..+++|++|++++
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKID-----DNAF--WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEEC-----TTTT--TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccC-----hhHh--cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC
Confidence 222222 22 667778888888887754221 1111 46789999999999 787763 467899999999999
Q ss_pred cCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCCCCCC
Q 048462 217 CPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGCPSLR 281 (325)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~ 281 (325)
|.. +.+. +..+..+++|++|++++| .++.++... ..+++|+.|+++++ .++
T Consensus 357 N~l-~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~ 408 (455)
T 3v47_A 357 NHI-RALG-----------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN-PWD 408 (455)
T ss_dssp SCC-CEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred Ccc-cccC-----------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC-Ccc
Confidence 964 3332 246788999999999997 677776643 56899999999998 444
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.9e-21 Score=184.39 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+++|++|++++| .++.+ |..++++++|++|++++|.++.+ |..+.++++|++|++++|.+....+.. ++++++|++
T Consensus 55 l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 132 (606)
T 3vq2_A 55 FSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKK 132 (606)
T ss_dssp CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCE
T ss_pred CccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCE
Confidence 478899999999 77776 56788899999999999988766 777888999999999987665544455 888889999
Q ss_pred EEecccceeeeeeccCc-cchhhhccCCCcceEEEEecCcccc
Q 048462 79 FSWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVDAV 120 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~ 120 (325)
|++++|.+ .. .++..+..+++|++|++++|.....
T Consensus 133 L~L~~n~l-------~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 133 LNVAHNFI-------HSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp EECCSSCC-------CCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred EeCCCCcc-------cceechHhHhhcCCCCEEEccCCcceec
Confidence 99988887 32 4577788888888888888875543
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=5e-21 Score=168.09 Aligned_cols=242 Identities=16% Similarity=0.183 Sum_probs=180.6
Q ss_pred CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+++++|++++| .++.++. .++.+++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|.. +. ++|++|
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~--~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-MP--KTLQEL 126 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-CC--TTCCEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-hc--ccccEE
Confidence 57899999999 7888864 789999999999999999766 778999999999999996544 56654 33 789999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~ 159 (325)
++++|.+ .......+..+++|+.|++++|.................|+.|+++++....+|.- ..++|++|+
T Consensus 127 ~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~ 198 (330)
T 1xku_A 127 RVHENEI-------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELH 198 (330)
T ss_dssp ECCSSCC-------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEE
T ss_pred ECCCCcc-------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEE
Confidence 9999987 55556678889999999999887654222222223345689999987766666652 128899999
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE 237 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 237 (325)
+++|...... +..+ ..+++|++|+++++ .++.++ .+..+++|++|++++|.. +.+ +.
T Consensus 199 l~~n~l~~~~-----~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l------------p~ 257 (330)
T 1xku_A 199 LDGNKITKVD-----AASL--KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKL-VKV------------PG 257 (330)
T ss_dssp CTTSCCCEEC-----TGGG--TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCC-SSC------------CT
T ss_pred CCCCcCCccC-----HHHh--cCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcC-ccC------------Ch
Confidence 9998864321 1111 46788999999998 677754 467789999999999853 333 34
Q ss_pred ccccCCcccEEeccCCCCcceeccCcc-------cCCCccEEeeeCCC
Q 048462 238 SQDFFSNLMVIDLRHLPSLTSICCGVV-------PFPSLQTISVNGCP 278 (325)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~c~ 278 (325)
.+..+++|++|++.+| .++.++.... ..+.|+.+++.+++
T Consensus 258 ~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 258 GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 6778899999999987 5666554322 24778899998875
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=5.4e-22 Score=193.03 Aligned_cols=246 Identities=22% Similarity=0.215 Sum_probs=162.4
Q ss_pred CCCCcEEecCCCCCCC-cCchhhhCcccCceecCCCCccc-ccChh-hhccccCceeeccCCCCCeeechhhhhCCC-cc
Q 048462 1 MHALAVLDLSYNLDLV-KLPEAIGKLINLCYLNLSNTRIG-QLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLS-SL 76 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L 76 (325)
|++|++|++++| .++ .+|..++.+++|++|++++|.+. .+|.. +.++++|++|++++|.+.+.+|.. +.+++ +|
T Consensus 293 ~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L 370 (768)
T 3rgz_A 293 CDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASL 370 (768)
T ss_dssp CTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTC
T ss_pred cCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCC
Confidence 467888888888 555 56777888888888888888774 77765 777888888888887666666666 66655 66
Q ss_pred cEEEecccceeeeee-------------------ccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEE
Q 048462 77 QVFSWFSTELVELHY-------------------VDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLA 137 (325)
Q Consensus 77 ~~L~l~~~~~~~~~~-------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 137 (325)
+.|++++|.+..... .-....+..+..+++|+.|++++|...+... ........|+.|+
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLK 448 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEE
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEE
Confidence 666666665410000 0022344556666666666666665442211 1111123467777
Q ss_pred Eceeeee-cccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCC-ccc-cccCCCCccE
Q 048462 138 VVLMASF-LLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMT-DLK-WIRYAPNLQF 211 (325)
Q Consensus 138 l~~~~~~-~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~-~l~-~~~~~~~L~~ 211 (325)
++++... .+|. +..+++|+.|++++|... +.+|. ..+++|++|++++| .++ .++ +++.+++|++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~---------~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLT---------GEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCC---------SCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCccc---------CcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCE
Confidence 7655443 3444 667777777777777653 23332 57899999999999 566 344 5778999999
Q ss_pred EEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEE
Q 048462 212 LYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTI 272 (325)
Q Consensus 212 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 272 (325)
|++++|.....+ +..++.+++|+.|++++|.-...+|........+..+
T Consensus 519 L~L~~N~l~~~~------------p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 519 LKLSNNSFSGNI------------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp EECCSSCCEEEC------------CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred EECCCCcccCcC------------CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh
Confidence 999999754333 3478899999999999986555677665554444443
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.1e-21 Score=171.98 Aligned_cols=220 Identities=18% Similarity=0.247 Sum_probs=170.9
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
+++++|++++| .++.+|..+..+++|++|++++|.++.+|..+.++++|++|++++|.+. .+|.. +.++++|++|++
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEE
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEEC
Confidence 57899999999 8999999999999999999999999999999999999999999997766 78887 999999999999
Q ss_pred cccceeeeeeccCccchhhhc---------cCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccC
Q 048462 82 FSTELVELHYVDSTSVLAELE---------SLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRM 152 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l 152 (325)
++|.. ....+..+. .+++|+.|++++|....++. .+..+
T Consensus 158 ~~n~~-------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-------------------------~l~~l 205 (328)
T 4fcg_A 158 RACPE-------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-------------------------SIANL 205 (328)
T ss_dssp EEETT-------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-------------------------GGGGC
T ss_pred CCCCC-------ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-------------------------hhcCC
Confidence 99876 344555444 49999999999997653321 13466
Q ss_pred CCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462 153 DHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPG 231 (325)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 231 (325)
++|++|++++|...... .. ...+++|++|++++|.....++ .+..+++|++|++++|.....+.
T Consensus 206 ~~L~~L~L~~N~l~~l~------~~--l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p------- 270 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSALG------PA--IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP------- 270 (328)
T ss_dssp TTCCEEEEESSCCCCCC------GG--GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-------
T ss_pred CCCCEEEccCCCCCcCc------hh--hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-------
Confidence 77777777777653111 11 1456778888888875444444 45677888888888887655443
Q ss_pred CCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeC
Q 048462 232 TSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNG 276 (325)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 276 (325)
..+..+++|+.|++++|.....+|.....+++|+.+.+..
T Consensus 271 -----~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 271 -----LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp -----TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred -----hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 3677888888888888888888888877888888887754
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.3e-21 Score=180.69 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=29.7
Q ss_pred ccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462 240 DFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN 286 (325)
Q Consensus 240 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~ 286 (325)
..+++|++|++++| +++.++. ...+++|+.|++++| +++.+|..
T Consensus 448 ~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 448 LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHH
Confidence 35677777777776 5556655 345778888888776 67766543
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2.8e-21 Score=169.79 Aligned_cols=242 Identities=17% Similarity=0.183 Sum_probs=180.1
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.+ |..+.++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|.. +. ++|++|
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~-~~--~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN-LP--SSLVEL 128 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSS-CC--TTCCEE
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcc-cc--ccCCEE
Confidence 57999999999 78877 45799999999999999999766 677899999999999996554 66765 43 899999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~ 159 (325)
++++|.+ .......+..+++|+.|++.+|............... .|+.|+++++....+|.- ..++|++|+
T Consensus 129 ~l~~n~i-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~ 199 (332)
T 2ft3_A 129 RIHDNRI-------RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELH 199 (332)
T ss_dssp ECCSSCC-------CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCB
T ss_pred ECCCCcc-------CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEE
Confidence 9999988 4444456888999999999999875422211111112 588888887766666652 227899999
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE 237 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 237 (325)
+++|...... ...+ ..+++|++|+++++ .++.++ .+..+++|++|++++|.. +.+ +.
T Consensus 200 l~~n~i~~~~-----~~~l--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l------------p~ 258 (332)
T 2ft3_A 200 LDHNKIQAIE-----LEDL--LRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKL-SRV------------PA 258 (332)
T ss_dssp CCSSCCCCCC-----TTSS--TTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCC-CBC------------CT
T ss_pred CCCCcCCccC-----HHHh--cCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcC-eec------------Ch
Confidence 9998764221 0111 46789999999998 777765 467889999999998853 333 34
Q ss_pred ccccCCcccEEeccCCCCcceeccCcc-------cCCCccEEeeeCCCC
Q 048462 238 SQDFFSNLMVIDLRHLPSLTSICCGVV-------PFPSLQTISVNGCPS 279 (325)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~c~~ 279 (325)
.+..+++|+.|+++++ .++.++.... ..+.|+.+++.+++-
T Consensus 259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 6788999999999987 5666554321 146789999998853
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=6.6e-22 Score=172.41 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=177.7
Q ss_pred CCCCcEEecCC-CCCCCcCchhhhCcccCceecCCCCccc-ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 1 MHALAVLDLSY-NLDLVKLPEAIGKLINLCYLNLSNTRIG-QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~-~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+++|++|++++ +...+.+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|.. +..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCe
Confidence 57899999995 6333477999999999999999999996 88999999999999999998887788887 999999999
Q ss_pred EEecccceeeeeeccCccchhhhccCC-CcceEEEEecCcccc-cccccCccccCCceEEEEceeeeec-ccc-cccCCC
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLE-NIHDISVTLCNVDAV-NRVKSSPKLQSCIKRLAVVLMASFL-LPL-DLRMDH 154 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-l~~-l~~l~~ 154 (325)
|++++|.+ ....+..+..++ +|+.|++++|...+. +.... .+ . |+.|+++++.... .|. +..+++
T Consensus 154 L~L~~N~l-------~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~--~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 154 ITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NL-N-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp EECCSSCC-------EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG--GC-C-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred EECcCCcc-------cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh--CC-c-ccEEECcCCcccCcCCHHHhcCCC
Confidence 99999998 556788898887 999999999987632 22111 11 2 8999999765543 333 889999
Q ss_pred CCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCC-ccc-cccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462 155 LETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMT-DLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPG 231 (325)
Q Consensus 155 L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 231 (325)
|+.|++++|... +..+. ..+++|++|+++++ .++ .++ .+..+++|++|++++|.....+.
T Consensus 223 L~~L~L~~N~l~---------~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip------- 285 (313)
T 1ogq_A 223 TQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP------- 285 (313)
T ss_dssp CSEEECCSSEEC---------CBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC-------
T ss_pred CCEEECCCCcee---------eecCcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCC-------
Confidence 999999999864 11221 45789999999999 676 343 57789999999999997543332
Q ss_pred CCccccccccCCcccEEeccCCCCcce
Q 048462 232 TSEIEESQDFFSNLMVIDLRHLPSLTS 258 (325)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~ 258 (325)
..+.+++|+.+++.+++.+..
T Consensus 286 ------~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 286 ------QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ------CSTTGGGSCGGGTCSSSEEES
T ss_pred ------CCccccccChHHhcCCCCccC
Confidence 237899999999999875544
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=6e-21 Score=165.77 Aligned_cols=241 Identities=17% Similarity=0.152 Sum_probs=171.7
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCe--eechhhhhCCCcccEEEe
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLA--FVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l 81 (325)
+.++.+++ .++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.+.. ..+.. +..+++|++|++
T Consensus 10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEEC
T ss_pred CEEEcCCC-CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEEC
Confidence 46788888 7888887554 6899999999999888876 5889999999999976553 23555 778999999999
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEE
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLE 159 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~ 159 (325)
++|.+ ...+..+..+++|+.|+++++............ ...+|+.|+++++.....+. +..+++|++|+
T Consensus 86 s~n~i--------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 86 SFNGV--------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp CSCSE--------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred CCCcc--------ccChhhcCCCCCCCEEECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 99987 345566788899999999888766554322222 22458888888655443332 77888999999
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE 237 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 237 (325)
+++|...+... +..+ ..+++|++|+++++ .++.+ ..+..+++|++|++++|.. +.+.. .
T Consensus 157 l~~n~l~~~~~----~~~~--~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~ 217 (306)
T 2z66_A 157 MAGNSFQENFL----PDIF--TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDT-----------F 217 (306)
T ss_dssp CTTCEEGGGEE----CSCC--TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-SBCCS-----------G
T ss_pred CCCCccccccc----hhHH--hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCcc-CccCh-----------h
Confidence 98887542000 1111 45788999999988 67775 3566788999999988863 22221 2
Q ss_pred ccccCCcccEEeccCCCCcceeccCcccCC-CccEEeeeCC
Q 048462 238 SQDFFSNLMVIDLRHLPSLTSICCGVVPFP-SLQTISVNGC 277 (325)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~c 277 (325)
.+..+++|+.|++++|.-....+.....++ +|+.|+++++
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 456788899999998843333444455564 8999999887
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=8.9e-21 Score=168.04 Aligned_cols=244 Identities=15% Similarity=0.132 Sum_probs=139.2
Q ss_pred CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.+|. .+.++++|++|++++|.++.++ ..+.++++|++|++++|.+. .++...+.++++|++|
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence 35667777777 5666643 5666777777777777665543 34666777777777765444 3343326667777777
Q ss_pred EecccceeeeeeccCccch--hhhccCCCcceEEEEecC-cccccccccCccccCCceEEEEceeeeecc-cc-cccCCC
Q 048462 80 SWFSTELVELHYVDSTSVL--AELESLENIHDISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLMASFLL-PL-DLRMDH 154 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~-l~~l~~ 154 (325)
++++|.+ . ..+ ..+..+++|+.|++++|. ...+... .......|+.|+++++....+ |. +..+++
T Consensus 130 ~L~~n~l-------~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 130 NLLGNPY-------K-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp ECTTCCC-------S-SSCSSCSCTTCTTCCEEEEEESSSCCEECTT--TTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred ECCCCCC-------c-ccCchhhhccCCCCcEEECCCCccccccCHH--HccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 7777665 2 222 245666777777777663 3322110 111123466666665443332 22 666667
Q ss_pred CCeEEEcCCCCceeccccCCCCCccc---cccccccEEEecCCCCCCccc-----cccCCCCccEEEEeccCCchhhccc
Q 048462 155 LETLEIDRCSLESKNDYFGDQGRTRT---YCFRNLRHLSVKTCPCMTDLK-----WIRYAPNLQFLYVSYCPRLSEIIGT 226 (325)
Q Consensus 155 L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~-----~~~~~~~L~~L~l~~~~~l~~~~~~ 226 (325)
|++|++++|... .++. ..+++|++|+++++ .++.++ .....+.++.+++.++.......
T Consensus 200 L~~L~l~~n~l~----------~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l-- 266 (353)
T 2z80_A 200 VSHLILHMKQHI----------LLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-- 266 (353)
T ss_dssp EEEEEEECSCST----------THHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHH--
T ss_pred CCeecCCCCccc----------cchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcch--
Confidence 777777666642 1111 23566777777766 455432 12234556666666654322110
Q ss_pred CCCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCC
Q 048462 227 YESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGC 277 (325)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c 277 (325)
..++..+..+++|+.|++++| .++.++... ..+++|++|+++++
T Consensus 267 ------~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 267 ------FQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp ------HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ------hhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 122345667788888888886 666776654 56788888888877
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=8.5e-21 Score=173.69 Aligned_cols=182 Identities=16% Similarity=0.210 Sum_probs=117.1
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+++|++|++++| .++.+| .++.+++|++|++++|.++.+| +.++++|++|++++|.+.+ ++ ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEE
T ss_pred cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEE
Confidence 367888888888 787776 5888888888888888887775 7788888888888866544 33 67788888888
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEcee-------------------
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLM------------------- 141 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------------- 141 (325)
+++|.+ .. . .+..+++|+.|++++|....++ + .....|+.|+++++
T Consensus 113 L~~N~l-------~~-l--~~~~l~~L~~L~l~~N~l~~l~-l----~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 113 CDTNKL-------TK-L--DVSQNPLLTYLNCARNTLTEID-V----SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp CCSSCC-------SC-C--CCTTCTTCCEEECTTSCCSCCC-C----TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred CCCCcC-------Ce-e--cCCCCCcCCEEECCCCccceec-c----ccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 888876 22 2 2666777777777777655431 1 11123444444433
Q ss_pred ---eeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462 142 ---ASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 142 ---~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~ 218 (325)
....+| +..+++|+.|++++|.... ++...+++|++|+++++ +++.++ +..+++|++|++++|.
T Consensus 178 s~n~l~~l~-l~~l~~L~~L~l~~N~l~~----------~~l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 178 SFNKITELD-VSQNKLLNRLNCDTNNITK----------LDLNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CSSCCCCCC-CTTCTTCCEEECCSSCCSC----------CCCTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred CCCccceec-cccCCCCCEEECcCCcCCe----------eccccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCCc
Confidence 322333 3444444444444444321 12245667777777777 666665 5567777777777664
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=9.3e-21 Score=177.60 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=66.2
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.+ |..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+....+.. ++++++|++|
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEE
T ss_pred CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH-hccCCCCcEE
Confidence 35777777777 56655 456777777777777777775544 45667777777777776555444444 6777777777
Q ss_pred EecccceeeeeeccCc-cchhhhccCCCcceEEEEecC
Q 048462 80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCN 116 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 116 (325)
++++|.+ .. ..+..+..+++|+.|++++|.
T Consensus 104 ~Ls~n~l-------~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 104 NLMGNPY-------QTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp ECTTCCC-------SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ECCCCcc-------cccchhhhhhccCCccEEECCCCc
Confidence 7777765 21 223345555555555555554
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=7e-21 Score=167.30 Aligned_cols=242 Identities=17% Similarity=0.138 Sum_probs=172.4
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++++++++++ .++.+|..+. ++|++|++++|.++.++ ..+.++++|++|++++|.+....|.. +.++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEEC
Confidence 5778888888 7777776553 57888888888877664 36778888888888887665555655 788888888888
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee---cccc-cccCCCCCe
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF---LLPL-DLRMDHLET 157 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~l~~-l~~l~~L~~ 157 (325)
++|.+ ..++..+. ++|++|++++|....++... .....+|+.|+++++... ..+. +..+ +|+.
T Consensus 110 ~~n~l--------~~l~~~~~--~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 110 SKNHL--------VEIPPNLP--SSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CSSCC--------CSCCSSCC--TTCCEEECCSSCCCCCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred CCCcC--------CccCcccc--ccCCEEECCCCccCccCHhH--hCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 88876 23333333 67888888888766543211 112345788888765442 1122 5555 7888
Q ss_pred EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcc
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEI 235 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 235 (325)
|++++|.... +|...+++|++|+++++ .++.++ .+..+++|++|++++|.. +.+.
T Consensus 177 L~l~~n~l~~----------l~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~----------- 233 (332)
T 2ft3_A 177 LRISEAKLTG----------IPKDLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQI-RMIE----------- 233 (332)
T ss_dssp CBCCSSBCSS----------CCSSSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCC-CCCC-----------
T ss_pred EECcCCCCCc----------cCccccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcC-CcCC-----------
Confidence 8888777532 33333478999999998 777764 577889999999999863 3222
Q ss_pred ccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCC
Q 048462 236 EESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLN 286 (325)
Q Consensus 236 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~ 286 (325)
+..+..+++|+.|++++| .+..++.....+++|+.|+++++ .++.+|..
T Consensus 234 ~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred hhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChh
Confidence 136778999999999998 77788888888999999999987 78888754
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3.2e-20 Score=178.39 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++++|++++| .++.+| ..++++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|...++++++|++|+
T Consensus 26 ~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 4566666666 555553 3456666666666666655433 344555666666666664333 33332255566666666
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCc
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNV 117 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 117 (325)
+++|.+ ....+..+..+++|++|++++|..
T Consensus 104 L~~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 104 LMSNSI-------QKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp CCSSCC-------CCCCSCTTTTCTTCCEEECCSSCC
T ss_pred CCCCcc-------CccChhHccccCCCCEEECCCCcc
Confidence 666554 222223445555555555555543
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.8e-20 Score=171.12 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=62.4
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.++ ..+..+++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|. . .+++|++|
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~--~-~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC--H-PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEEC--C-CCCCCSEE
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCc--c-ccCCccEE
Confidence 35666777766 555553 4566666777777776666544 455666666666666665433 4554 2 56666666
Q ss_pred EecccceeeeeeccCc-cchhhhccCCCcceEEEEecCc
Q 048462 80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNV 117 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 117 (325)
++++|.+ .. ..+..++.+++|+.|++++|..
T Consensus 96 ~L~~N~l-------~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 96 DLSFNAF-------DALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp ECCSSCC-------SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred eccCCcc-------ccccchhhhccCCcceEEEecCccc
Confidence 6666665 22 2345556666666666666554
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=4.5e-20 Score=173.60 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
|++|++|++++| .++.+ |..++++++|++|++++|.++.++ ..+.++++|++|++++|.+.. ++...++++++|++
T Consensus 51 l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKE 128 (570)
T ss_dssp CSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCE
T ss_pred CCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccccccE
Confidence 467777888877 66666 355777777777777777776554 456677777777777754332 33211666667777
Q ss_pred EEecccceeeeeeccCc-cchhhhccCCCcceEEEEecCc
Q 048462 79 FSWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNV 117 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 117 (325)
|++++|.+ .. ..+..+..+++|++|++++|..
T Consensus 129 L~L~~n~l-------~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 129 LNVAHNLI-------QSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp EECCSSCC-------CCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred EecCCCcc-------ceecChhhhcccCCCCEEeCcCCcc
Confidence 77766665 22 2455566666666666665543
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=8.4e-20 Score=167.09 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=125.1
Q ss_pred chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccch
Q 048462 19 PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL 98 (325)
Q Consensus 19 p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 98 (325)
+..++.+++|++|+++++.++.+| .+.++++|++|++++|.+.+ +| ++.+++|++|++++|.+ .. .
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l-------~~-~- 100 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKL-------TN-L- 100 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC-------SC-C-
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCC-------ce-e-
Confidence 456888999999999999998887 68999999999999976554 43 78999999999999988 33 2
Q ss_pred hhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCc
Q 048462 99 AELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT 178 (325)
Q Consensus 99 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 178 (325)
.+..+++|+.|++++|....++ + ....+|+.|+++++....++ +..+++|++|++++|... +.+
T Consensus 101 -~~~~l~~L~~L~L~~N~l~~l~-~----~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~---------~~~ 164 (457)
T 3bz5_A 101 -DVTPLTKLTYLNCDTNKLTKLD-V----SQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKI---------TKL 164 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCC-C----TTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCC---------CCC
T ss_pred -ecCCCCcCCEEECCCCcCCeec-C----CCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCcc---------ccc
Confidence 2788999999999999877653 2 23346999999976655553 778899999999988643 111
Q ss_pred cccccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462 179 RTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 179 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~ 218 (325)
+...+++|++|+++++ +++.++ +..+++|+.|++++|.
T Consensus 165 ~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSC
T ss_pred ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCc
Confidence 2244566666666666 555554 4455566666555553
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=164.17 Aligned_cols=267 Identities=17% Similarity=0.103 Sum_probs=191.1
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
|+.....+.+++ .++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +.++++|++|
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEE
T ss_pred CCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEE
Confidence 345566888888 8999998665 599999999999988876 6899999999999998766655555 9999999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceee-eeccc--ccccCCCCC
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMA-SFLLP--LDLRMDHLE 156 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~--~l~~l~~L~ 156 (325)
++++|.+ .......+..+++|+.|++++|....++... ......+|+.|+++++. ...++ .+..+++|+
T Consensus 106 ~Ls~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 106 DLSYNYL-------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp ECCSSCC-------SSCCHHHHTTCTTCSEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ECCCCcC-------CcCCHhHhCCCccCCEEECCCCCCcccCchh-hhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 9999988 4444445889999999999999877654411 11223469999999763 33333 388899999
Q ss_pred eEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCc
Q 048462 157 TLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSE 234 (325)
Q Consensus 157 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 234 (325)
+|++++|...... +..+ ..+++|++|+++++ .++.++. ...+++|++|++++|.. +......
T Consensus 178 ~L~l~~n~l~~~~-----~~~l--~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~------- 241 (353)
T 2z80_A 178 ELEIDASDLQSYE-----PKSL--KSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDL-DTFHFSE------- 241 (353)
T ss_dssp EEEEEETTCCEEC-----TTTT--TTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBC-TTCCCC--------
T ss_pred EEECCCCCcCccC-----HHHH--hccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCcc-ccccccc-------
Confidence 9999999864221 1112 46789999999999 6776653 33589999999999863 3322100
Q ss_pred cccccccCCcccEEeccCCCC----cceeccCcccCCCccEEeeeCCCCCCCCCCCC-CCcccceeEEe
Q 048462 235 IEESQDFFSNLMVIDLRHLPS----LTSICCGVVPFPSLQTISVNGCPSLRKLPLNS-GSAKNSLNAIR 298 (325)
Q Consensus 235 ~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~-~~~~~~l~~~~ 298 (325)
.......+.++.++++++.- +..++.....+++|+.|++++| +++.+|..+ ... ..+..++
T Consensus 242 -l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l-~~L~~L~ 307 (353)
T 2z80_A 242 -LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRL-TSLQKIW 307 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEE
T ss_pred -cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcC-CCCCEEE
Confidence 01223456677777777621 2234444556899999999998 888999775 344 4444443
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=4.6e-20 Score=168.85 Aligned_cols=222 Identities=16% Similarity=0.128 Sum_probs=142.3
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+++++|++++| .++.+ |..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 45778888887 66665 566777888888888888776554 45677888888888876544 3443336777888888
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcc-cccccccCccccCCceEEEEceeeeecccccccCCCCCeE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD-AVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETL 158 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L 158 (325)
++++|.+ .......+..+++|+.|++.++... .++. . ......+|+.|+++++....+|.+..+++|+.|
T Consensus 153 ~L~~N~l-------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 153 WLRNNPI-------ESIPSYAFNRVPSLMRLDLGELKKLEYISE-G-AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223 (452)
T ss_dssp ECCSCCC-------CEECTTTTTTCTTCCEEECCCCTTCCEECT-T-TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEE
T ss_pred ECCCCCc-------ceeCHhHHhcCCcccEEeCCCCCCccccCh-h-hccCCCCCCEEECCCCcccccccccccccccEE
Confidence 8888776 3333445677778888887764322 2211 1 111223577777777666667777777788888
Q ss_pred EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462 159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236 (325)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 236 (325)
++++|...... +..+ ..+++|++|+++++ .++.+. .+..+++|+.|++++|. ++.+..
T Consensus 224 ~Ls~N~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----------- 283 (452)
T 3zyi_A 224 EMSGNHFPEIR-----PGSF--HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN-LSSLPH----------- 283 (452)
T ss_dssp ECTTSCCSEEC-----GGGG--TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCT-----------
T ss_pred ECcCCcCcccC-----cccc--cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc-CCccCh-----------
Confidence 88777754221 1111 35677888888777 566543 35567778888887774 333322
Q ss_pred cccccCCcccEEeccCCC
Q 048462 237 ESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~ 254 (325)
..+..+++|+.|++.+++
T Consensus 284 ~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSSTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEccCCC
Confidence 245567777888777653
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=2e-19 Score=164.63 Aligned_cols=237 Identities=17% Similarity=0.224 Sum_probs=131.4
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+.++.++. .++.+|..+. .++++|++++|.++.+ +..+.++++|++|++++|.+....+.. +.++++|++|++++
T Consensus 57 ~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred cEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCC
Confidence 45666666 6667775554 5778888888877655 455777888888888876655544444 77788888888888
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc--cccCCCCCeEEE
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL--DLRMDHLETLEI 160 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~--l~~l~~L~~L~l 160 (325)
|.+ .......+..+++|+.|++++|....++... .....+|+.|+++++... .++. +..+++|++|++
T Consensus 133 n~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 133 NWL-------TVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SCC-------SBCCTTTSSSCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CcC-------CccChhhhcccCCCCEEECCCCCcceeCHhH--HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 776 3334445667778888888777665443211 111223555665542221 2222 455556666666
Q ss_pred cCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462 161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES 238 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 238 (325)
++|...+. + ....+++|++|+++++ .++.+. .+..+++|+.|++++|.. +.+.. ..
T Consensus 204 ~~n~l~~~------~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-----------~~ 261 (452)
T 3zyi_A 204 GMCNIKDM------P---NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQV-SLIER-----------NA 261 (452)
T ss_dssp TTSCCSSC------C---CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCC-CEECT-----------TT
T ss_pred CCCccccc------c---cccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcC-ceECH-----------HH
Confidence 55554211 0 0134555666666655 444432 344555566666655542 22111 23
Q ss_pred cccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCC
Q 048462 239 QDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGC 277 (325)
Q Consensus 239 ~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c 277 (325)
+..+++|+.|++++| .++.++... ..+++|+.|+++++
T Consensus 262 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 262 FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 445555666666655 444444322 23555666665554
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.2e-19 Score=178.31 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeech-hhhhCCCccc
Q 048462 1 MHALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPC-QVISSLSSLQ 77 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~ 77 (325)
+++|++|++++|..+..+ |..+.++++|++|++++|.+..+ |..+.++++|++|++++|......+. ..+.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 468889999988556666 67788899999999999888655 77788899999999988776654442 2267888899
Q ss_pred EEEecccceeeeeeccCccc-hhhhccCCCcceEEEEecCcc
Q 048462 78 VFSWFSTELVELHYVDSTSV-LAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 118 (325)
+|++++|.+ .... ...++.+++|+.|++++|...
T Consensus 127 ~L~Ls~N~l-------~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 127 RLDLSKNQI-------RSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp EEEEESCCC-------CCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred EEECCCCcc-------cccccchhHhhCCCCCEEECCCCcCC
Confidence 999888877 3332 356788888888888887654
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=8.7e-20 Score=171.68 Aligned_cols=84 Identities=26% Similarity=0.256 Sum_probs=65.1
Q ss_pred CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCe-eechhhhhCCCccc
Q 048462 1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLA-FVPCQVISSLSSLQ 77 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~ 77 (325)
|++|++|++++| .++.++ ..++++++|++|++++|.++.++. .++++++|++|++++|.+.. .+|.. ++++++|+
T Consensus 75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~ 152 (570)
T 2z63_A 75 LSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLE 152 (570)
T ss_dssp CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCC
T ss_pred chhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCC
Confidence 467888888888 677664 678888888888888888876665 47788888888888876554 45766 88888888
Q ss_pred EEEecccce
Q 048462 78 VFSWFSTEL 86 (325)
Q Consensus 78 ~L~l~~~~~ 86 (325)
+|++++|.+
T Consensus 153 ~L~l~~n~l 161 (570)
T 2z63_A 153 HLDLSSNKI 161 (570)
T ss_dssp EEECTTSCC
T ss_pred EEeCcCCcc
Confidence 888888765
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.6e-19 Score=177.32 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=105.4
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCc-cccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTR-IGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~-l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+++++|++++| .++.+ |..++++++|++|++++|. ...+ |..+.++++|++|++++|.+....|.. +.++++|++
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCC
T ss_pred CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcccCE
Confidence 67999999999 78876 6889999999999999994 4666 677999999999999998877777777 999999999
Q ss_pred EEecccceeeeeeccCccchhh--hccCCCcceEEEEecCcccccccccCccccCCceEEEEceee
Q 048462 79 FSWFSTELVELHYVDSTSVLAE--LESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMA 142 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 142 (325)
|++++|.+ ....+.. +..+++|++|++++|.......-... ....+|+.|+++++.
T Consensus 102 L~Ls~n~l-------~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 102 LRLYFCGL-------SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF-GKLNSLKSIDFSSNQ 159 (844)
T ss_dssp EECTTCCC-------SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG-GTCSSCCEEEEESSC
T ss_pred eeCcCCCC-------CcccccCccccccCCCCEEECCCCcccccccchhH-hhCCCCCEEECCCCc
Confidence 99999988 4444444 88999999999999987654321111 223458889888643
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=167.25 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=140.3
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++++.|++++| .++.++ ..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence 35777777777 666653 56777777888888777776554 44677777888888776444 3443226777778888
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc-ccccccCccccCCceEEEEceeeeecccccccCCCCCeE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA-VNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETL 158 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L 158 (325)
++++|.+ .......+..+++|+.|++.++.... +.. . ...-..+|+.|+++++....+|.+..+++|+.|
T Consensus 142 ~L~~N~i-------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 142 WLRNNPI-------ESIPSYAFNRIPSLRRLDLGELKRLSYISE-G-AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212 (440)
T ss_dssp ECCSCCC-------CEECTTTTTTCTTCCEEECCCCTTCCEECT-T-TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEE
T ss_pred eCCCCcc-------cccCHHHhhhCcccCEeCCCCCCCcceeCc-c-hhhcccccCeecCCCCcCccccccCCCcccCEE
Confidence 8877776 33334456677777777777643222 211 1 111223577777777666677777777777778
Q ss_pred EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462 159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236 (325)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 236 (325)
++++|...... +..+ ..+++|++|+++++ .++.+. .+..+++|++|+|++|. ++.+..
T Consensus 213 ~Ls~N~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----------- 272 (440)
T 3zyj_A 213 DLSGNHLSAIR-----PGSF--QGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN-LTLLPH----------- 272 (440)
T ss_dssp ECTTSCCCEEC-----TTTT--TTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC-CCCCCT-----------
T ss_pred ECCCCccCccC-----hhhh--ccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC-CCccCh-----------
Confidence 77777654221 1111 35677777777777 666653 45567777777777774 333322
Q ss_pred cccccCCcccEEeccCCC
Q 048462 237 ESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~ 254 (325)
..+..+++|+.|++.+++
T Consensus 273 ~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTSSCTTCCEEECCSSC
T ss_pred hHhccccCCCEEEcCCCC
Confidence 245567777777777653
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=3e-19 Score=162.92 Aligned_cols=238 Identities=17% Similarity=0.237 Sum_probs=126.2
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
.+.++.++. .++.+|..+. .++++|++++|.++.++ ..+.++++|++|++++|.+....+.. +.++++|++|+++
T Consensus 45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECC
T ss_pred CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-ccCCccCCEEECC
Confidence 345555665 6667766554 56777777777776554 45677777777777776554433344 7777777777777
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee-cccc--cccCCCCCeEE
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF-LLPL--DLRMDHLETLE 159 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~--l~~l~~L~~L~ 159 (325)
+|.+ .......+..+++|+.|++++|....++... .....+|+.|+++++... .++. +..+++|++|+
T Consensus 121 ~n~l-------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 121 DNRL-------TTIPNGAFVYLSKLKELWLRNNPIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCC-------SSCCTTTSCSCSSCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCcC-------CeeCHhHhhccccCceeeCCCCcccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 7776 3333445667777777777777655433211 111223555555542221 1221 44555555555
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE 237 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 237 (325)
+++|...+. +. ...+++|++|+++++ .++.+. .+..+++|+.|++++|.. +.+.. .
T Consensus 192 L~~n~l~~~------~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-----------~ 249 (440)
T 3zyj_A 192 LAMCNLREI------PN---LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQI-QVIER-----------N 249 (440)
T ss_dssp CTTSCCSSC------CC---CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCC-CEECT-----------T
T ss_pred CCCCcCccc------cc---cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCce-eEECh-----------h
Confidence 555543211 00 133455555555555 444432 344455555555555532 22211 2
Q ss_pred ccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCC
Q 048462 238 SQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGC 277 (325)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c 277 (325)
.+..+++|+.|++++| .++.++... ..+++|+.|+++++
T Consensus 250 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp SSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred hhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 3445555555555554 444443322 23455555555544
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=5e-19 Score=166.35 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=67.5
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.++ ..++++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 45677777777 566664 5677777777777777777655 445667777777777775443 55542 56777777
Q ss_pred EecccceeeeeeccCc-cchhhhccCCCcceEEEEecCcc
Q 048462 80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 118 (325)
++++|.+ .. ..+..+..+++|+.|+++++...
T Consensus 127 ~Ls~N~l-------~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 127 DLSFNDF-------DVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ECCSSCC-------SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ECCCCCc-------cccCchHhhcccCcccEEecCCCccc
Confidence 7777765 22 22356666677777777666544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=9.4e-20 Score=158.21 Aligned_cols=221 Identities=19% Similarity=0.175 Sum_probs=170.6
Q ss_pred CCCcEEecCCCCCCCcCchh-hhCcccCceecCCCCccccc---ChhhhccccCceeeccCCCCCeeechhhhhCCCccc
Q 048462 2 HALAVLDLSYNLDLVKLPEA-IGKLINLCYLNLSNTRIGQL---PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQ 77 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 77 (325)
++|++|++++| .++.+|.. ++++++|++|++++|.++.+ +..+..+++|++|++++|.+ ..+|.. +..+++|+
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~~-~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSN-FLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEEE-EETCTTCC
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChhh-cCCCCCCC
Confidence 57999999999 88888755 78999999999999988644 67788899999999999654 457766 88999999
Q ss_pred EEEecccceeeeeeccCccc-hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec--ccc-cccCC
Q 048462 78 VFSWFSTELVELHYVDSTSV-LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL--LPL-DLRMD 153 (325)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~-l~~l~ 153 (325)
+|++++|.+ .... ...+..+++|+.|++++|........ ......+|+.|+++++.... +|. +..++
T Consensus 105 ~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 105 HLDFQHSNL-------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEECTTSEE-------ESSTTTTTTTTCTTCCEEECTTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred EEECCCCcc-------cccccchhhhhccCCCEEECCCCcCCccchh--hcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 999999987 2222 25688899999999999876543221 11223469999999766543 555 88999
Q ss_pred CCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCC
Q 048462 154 HLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPG 231 (325)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 231 (325)
+|++|++++|...+.. +..+ ..+++|++|+++++ .++.++ .+..+++|++|++++|.......
T Consensus 176 ~L~~L~Ls~n~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------- 240 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLS-----PTAF--NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------- 240 (306)
T ss_dssp TCCEEECTTSCCCEEC-----TTTT--TTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-------
T ss_pred CCCEEECCCCCcCCcC-----HHHh--cCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCH-------
Confidence 9999999999865321 1112 46789999999999 787765 46678999999999996433222
Q ss_pred CCccccccccCC-cccEEeccCCC
Q 048462 232 TSEIEESQDFFS-NLMVIDLRHLP 254 (325)
Q Consensus 232 ~~~~~~~~~~~~-~L~~L~l~~~~ 254 (325)
..+..++ +|++|++.+++
T Consensus 241 -----~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 241 -----QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -----SSCCCCCTTCCEEECTTCC
T ss_pred -----HHHHhhhccCCEEEccCCC
Confidence 3566674 89999999974
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=4.6e-20 Score=161.03 Aligned_cols=232 Identities=16% Similarity=0.116 Sum_probs=162.6
Q ss_pred cEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 5 AVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+..+++.+ .+...+ ..+..+++|++|++++|.++.++ ..+.++++|++|++++|.+.... . +..+++|++|+++
T Consensus 13 ~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 13 KIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLN 88 (317)
T ss_dssp EEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECC
T ss_pred eEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECc
Confidence 34455555 343332 33455678888888888887665 46788888888888886655433 3 6788888888888
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEE
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEI 160 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l 160 (325)
+|.+ . .+...++|+.|++++|....+.... ..+|+.|+++++....++. +..+++|++|++
T Consensus 89 ~n~l-------~-----~l~~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 89 NNYV-------Q-----ELLVGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp SSEE-------E-----EEEECTTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred CCcc-------c-----cccCCCCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 8876 1 1224478888888888776653221 2358888888766655543 677888999999
Q ss_pred cCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccc
Q 048462 161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQD 240 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 240 (325)
++|....... ..+. ..+++|++|+++++ .++.++....+++|++|++++|.. +.+. ..+.
T Consensus 152 s~N~l~~~~~-----~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l-~~l~------------~~~~ 211 (317)
T 3o53_A 152 KLNEIDTVNF-----AELA-ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKL-AFMG------------PEFQ 211 (317)
T ss_dssp TTSCCCEEEG-----GGGG-GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCC-CEEC------------GGGG
T ss_pred CCCCCCcccH-----HHHh-hccCcCCEEECCCC-cCcccccccccccCCEEECCCCcC-Ccch------------hhhc
Confidence 8887643221 1110 34678999999888 788777766788899999988853 3332 2566
Q ss_pred cCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462 241 FFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP 278 (325)
Q Consensus 241 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 278 (325)
.+++|+.|++++| .++.++.....+++|+.|++++++
T Consensus 212 ~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 212 SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 7888999999887 677787777778889999998873
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2.6e-19 Score=172.07 Aligned_cols=250 Identities=22% Similarity=0.227 Sum_probs=131.9
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcc--cccChh-hhc--cccCceeeccCCCCCeeechhhhhCCCc
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRI--GQLPTG-ITY--LKNLKILRLDGMRYLAFVPCQVISSLSS 75 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l--~~lp~~-l~~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 75 (325)
++|++|++++| .++.+ +..+..+++|++|++++|.+ ..++.. +.. .++|+.|++++|.+....|.. +..+++
T Consensus 329 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~ 406 (680)
T 1ziw_A 329 KCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGH 406 (680)
T ss_dssp TTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTT
T ss_pred CCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCC
Confidence 44555555555 44444 33455555666666555532 222221 111 235555555555555444555 778888
Q ss_pred ccEEEecccceeeeeeccCccch-hhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee---cccc-cc
Q 048462 76 LQVFSWFSTELVELHYVDSTSVL-AELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF---LLPL-DL 150 (325)
Q Consensus 76 L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~l~~-l~ 150 (325)
|+.|++++|.+ ....+ ..+..+++|+.|++++|......... ......|+.|+++++... .+|. +.
T Consensus 407 L~~L~L~~N~l-------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 407 LEVLDLGLNEI-------GQELTGQEWRGLENIFEIYLSYNKYLQLTRNS--FALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp CCEEECCSSCC-------EEECCSGGGTTCTTCCEEECCSCSEEECCTTT--TTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred CCEEeCCCCcC-------ccccCcccccCcccccEEecCCCCcceeChhh--hhcCcccccchhccccccccccCCcccc
Confidence 88888888876 22222 45677788888888777654432211 112234666666644322 2333 56
Q ss_pred cCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc----------cccCCCCccEEEEeccCCc
Q 048462 151 RMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK----------WIRYAPNLQFLYVSYCPRL 220 (325)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~----------~~~~~~~L~~L~l~~~~~l 220 (325)
.+++|+.|++++|...... +..+ ..+++|++|+++++ .++.+. .+..+++|++|++++|..
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~-----~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l- 548 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANIN-----DDML--EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGF- 548 (680)
T ss_dssp TCTTCCEEECCSSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC-
T ss_pred cCCCCCEEECCCCCCCcCC-----hhhh--ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCC-
Confidence 6667777777666543111 0111 34566666666666 454431 134556666666666642
Q ss_pred hhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEeeeCCCCCCCCC
Q 048462 221 SEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTISVNGCPSLRKLP 284 (325)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~ip 284 (325)
+.+.. ..+..+++|+.|+++++ .++.++... ..+++|+.|++++| +++.+|
T Consensus 549 ~~i~~-----------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~ 600 (680)
T 1ziw_A 549 DEIPV-----------EVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVE 600 (680)
T ss_dssp CCCCT-----------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCC
T ss_pred CCCCH-----------HHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccC
Confidence 22221 23455666666666654 455554432 23566666666655 555554
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=5.3e-20 Score=158.17 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=138.8
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+.++.+++ .++.+|..+ .++|++|+++++.++.++. .+.++++|++|++++|.+....+.. +..+++|++|++++
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCC
Confidence 45666666 677776543 3577777777777766653 4677777777777776555444555 77777777777777
Q ss_pred cc-eeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEE
Q 048462 84 TE-LVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEI 160 (325)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l 160 (325)
|. + ....+..+..+++|+.|++++|....+... ......+|+.|+++++....++. +..+++|++|++
T Consensus 90 n~~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 90 NAQL-------RSVDPATFHGLGRLHTLHLDRCGLQELGPG--LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CTTC-------CCCCTTTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCc-------cccCHHHhcCCcCCCEEECCCCcCCEECHh--HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 75 4 333355667777777777777765544221 11122357777777655554444 677888888888
Q ss_pred cCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCccccc
Q 048462 161 DRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEES 238 (325)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 238 (325)
++|...... ...+ ..+++|++|+++++ .++.+ ..+..+++|++|++++|.. +.+.. ..
T Consensus 161 ~~n~l~~~~-----~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-----------~~ 220 (285)
T 1ozn_A 161 HGNRISSVP-----ERAF--RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNL-SALPT-----------EA 220 (285)
T ss_dssp CSSCCCEEC-----TTTT--TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-SCCCH-----------HH
T ss_pred CCCcccccC-----HHHh--cCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcC-CcCCH-----------HH
Confidence 887654221 1111 34678888888887 56664 3456678888888888753 22221 24
Q ss_pred cccCCcccEEeccCCC
Q 048462 239 QDFFSNLMVIDLRHLP 254 (325)
Q Consensus 239 ~~~~~~L~~L~l~~~~ 254 (325)
+..+++|+.|++.+++
T Consensus 221 ~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNP 236 (285)
T ss_dssp HTTCTTCCEEECCSSC
T ss_pred cccCcccCEEeccCCC
Confidence 6677888888888764
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=3.3e-19 Score=154.89 Aligned_cols=188 Identities=19% Similarity=0.234 Sum_probs=128.4
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++|++|++++| .++.+| .+..+++|++|++++|.++.++. +.++++|++|++++|.+. .++. +..+++|++|++
T Consensus 41 ~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCEEEC
T ss_pred CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cchh--hcCCCCCCEEEC
Confidence 56888888888 777776 57788888888888888877776 788888888888886543 3443 788888888888
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID 161 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~ 161 (325)
++|.+ .. . ..+..+++|+.|++++|....++.+. ...+|+.|+++++....++.+..+++|+.|+++
T Consensus 115 ~~n~l-------~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 115 TSTQI-------TD-V-TPLAGLSNLQVLYLDLNQITNISPLA----GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181 (308)
T ss_dssp TTSCC-------CC-C-GGGTTCTTCCEEECCSSCCCCCGGGG----GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCCC-------CC-c-hhhcCCCCCCEEECCCCccCcCcccc----CCCCccEEEccCCcCCCChhhcCCCCCCEEECC
Confidence 88877 22 2 23777888888888888766554422 123467777766555555556666777777777
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~ 218 (325)
+|...+ ..+...+++|++|++++| .+++++.+..+++|+.|++++|+
T Consensus 182 ~n~l~~---------~~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 182 DNKISD---------ISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SSCCCC---------CGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCccCc---------ChhhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 666431 111245666777777766 56666556666777777776665
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=5.8e-19 Score=151.64 Aligned_cols=217 Identities=15% Similarity=0.133 Sum_probs=161.9
Q ss_pred ceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcc
Q 048462 29 CYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIH 108 (325)
Q Consensus 29 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 108 (325)
++++.+++.++.+|..+ .++|++|++++|.+....+.. +..+++|++|++++|.+ ....+..+..+++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVL-------ARIDAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC-------CEECTTTTTTCTTCC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCcc-------ceeCHhhcCCccCCC
Confidence 57888888888898754 579999999997665544445 89999999999999987 455577888999999
Q ss_pred eEEEEecC-cccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCcccccccc
Q 048462 109 DISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRN 185 (325)
Q Consensus 109 ~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (325)
.|++++|. ...+... ......+|+.|+++++....++. +..+++|++|++++|...... ...+ ..+++
T Consensus 84 ~L~l~~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~--~~l~~ 154 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----DDTF--RDLGN 154 (285)
T ss_dssp EEECCSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTT--TTCTT
T ss_pred EEeCCCCCCccccCHH--HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-----HhHh--ccCCC
Confidence 99999996 5544211 11223468999999766655543 788999999999998764221 1111 45789
Q ss_pred ccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC-
Q 048462 186 LRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG- 262 (325)
Q Consensus 186 L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 262 (325)
|++|+++++ +++.++. +..+++|++|++++|.. ..+. +..+..+++|+.|++++| .+..++..
T Consensus 155 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 220 (285)
T 1ozn_A 155 LTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV-AHVH-----------PHAFRDLGRLMTLYLFAN-NLSALPTEA 220 (285)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-CEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCHHH
T ss_pred ccEEECCCC-cccccCHHHhcCccccCEEECCCCcc-cccC-----------HhHccCcccccEeeCCCC-cCCcCCHHH
Confidence 999999998 7887653 67789999999999863 3222 246778899999999997 56655533
Q ss_pred cccCCCccEEeeeCCC
Q 048462 263 VVPFPSLQTISVNGCP 278 (325)
Q Consensus 263 ~~~~~~L~~L~l~~c~ 278 (325)
...+++|+.|++++++
T Consensus 221 ~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNP 236 (285)
T ss_dssp HTTCTTCCEEECCSSC
T ss_pred cccCcccCEEeccCCC
Confidence 4568899999998873
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.5e-19 Score=165.34 Aligned_cols=242 Identities=15% Similarity=0.125 Sum_probs=153.8
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcc-cccChhhhccccC-------------ceeeccCCCCCeeech
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRI-GQLPTGITYLKNL-------------KILRLDGMRYLAFVPC 67 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l-~~lp~~l~~l~~L-------------~~L~l~~~~~~~~~~~ 67 (325)
.+|++|++++| .++.+|+.++++++|++|++++|.+ +.+|..++++.+| ++|++++|.. ..+|.
T Consensus 11 ~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCCS
T ss_pred ccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCCC
Confidence 57899999999 7899999999999999999999987 4889988888875 9999999654 44554
Q ss_pred hhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeeccc
Q 048462 68 QVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLP 147 (325)
Q Consensus 68 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 147 (325)
. .++|++|++++|.+ .. ++. ..++|+.|++++|....++.. ..+|++|+++++....+|
T Consensus 89 ~----~~~L~~L~l~~n~l-------~~-lp~---~~~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 89 L----PPHLESLVASCNSL-------TE-LPE---LPQSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp C----CTTCSEEECCSSCC-------SS-CCC---CCTTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSCC
T ss_pred C----cCCCCEEEccCCcC-------Cc-ccc---ccCCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCCc
Confidence 2 47899999999987 22 332 247899999999887765433 246899999987777788
Q ss_pred ccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhc---
Q 048462 148 LDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEII--- 224 (325)
Q Consensus 148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~--- 224 (325)
.+..+++|++|++++|.... +| ...++|++|+++++ .++.++.+..+++|++|++++|.. +.+.
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~----------lp-~~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l-~~l~~~~ 214 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK----------LP-DLPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSL-KKLPDLP 214 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC----------CC-CCCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCC-SSCCCCC
T ss_pred ccCCCCCCCEEECCCCcCcc----------cC-CCcccccEEECcCC-cCCcCccccCCCCCCEEECCCCcC-CcCCCCc
Confidence 89999999999999987642 22 12358888888888 777777777888888888888753 2211
Q ss_pred -------ccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCC
Q 048462 225 -------GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNS 287 (325)
Q Consensus 225 -------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~ 287 (325)
...+ ....++ .++.+++|++|++++| .+..++. .+++|+.|++++| .++.+|...
T Consensus 215 ~~L~~L~l~~n--~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~~~ 276 (454)
T 1jl5_A 215 LSLESIVAGNN--ILEELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPELP 276 (454)
T ss_dssp TTCCEEECCSS--CCSSCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCCCC
T ss_pred CcccEEECcCC--cCCccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCccc
Confidence 1111 111233 3556777777777775 4444443 2367777777766 566666543
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=8.9e-19 Score=161.61 Aligned_cols=221 Identities=17% Similarity=0.150 Sum_probs=155.1
Q ss_pred cCchhhhCcc----cCceecCCCCcccccC-hhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeee
Q 048462 17 KLPEAIGKLI----NLCYLNLSNTRIGQLP-TGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHY 91 (325)
Q Consensus 17 ~lp~~~~~l~----~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 91 (325)
.+|..+..+. +|++|++++|.++.++ ..+.++++|++|++++|.+.+..| +..+++|++|++++|.+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l----- 92 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV----- 92 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEE-----
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcC-----
Confidence 4555555543 7888888888886554 467888888888888866554433 67788888888888876
Q ss_pred ccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceec
Q 048462 92 VDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKN 169 (325)
Q Consensus 92 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~ 169 (325)
. . +...++|+.|++++|....+.... ..+|+.|+++++....++. +..+++|+.|++++|......
T Consensus 93 --~-~----l~~~~~L~~L~L~~N~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 93 --Q-E----LLVGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp --E-E----EEECTTCCEEECCSSCCCCEEECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred --C-C----CCCCCCcCEEECcCCcCCCCCccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 1 1 223478888888888776654321 2357888888666554433 677888888998888764221
Q ss_pred cccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEe
Q 048462 170 DYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVID 249 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 249 (325)
+..+. ..+++|++|++++| .++.++....+++|++|++++|.. +.+. ..+..+++|+.|+
T Consensus 161 -----~~~l~-~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~------------~~~~~l~~L~~L~ 220 (487)
T 3oja_A 161 -----FAELA-ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKL-AFMG------------PEFQSAAGVTWIS 220 (487)
T ss_dssp -----GGGGG-GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCC-CEEC------------GGGGGGTTCSEEE
T ss_pred -----hHHHh-hhCCcccEEecCCC-ccccccccccCCCCCEEECCCCCC-CCCC------------HhHcCCCCccEEE
Confidence 11111 25688889999888 788777777788899998888853 3332 3567788888999
Q ss_pred ccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462 250 LRHLPSLTSICCGVVPFPSLQTISVNGCP 278 (325)
Q Consensus 250 l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 278 (325)
+++| .+..++.....+++|+.|++++|+
T Consensus 221 Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 221 LRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 8886 677777777778888888888874
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.4e-20 Score=161.89 Aligned_cols=240 Identities=17% Similarity=0.127 Sum_probs=180.5
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++|++|++++| .++.++ ..+..+++|++|++++|.+..++. +..+++|++|++++|.+. . +...++|++|+
T Consensus 34 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~-----l~~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-E-----LLVGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-E-----EEECTTCCEEE
T ss_pred CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-c-----ccCCCCcCEEE
Confidence 58999999999 788774 789999999999999999976665 899999999999997543 3 33458999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecc--ccc-ccCCCCCe
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLL--PLD-LRMDHLET 157 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~~l-~~l~~L~~ 157 (325)
+++|.+ ..... ..+++|+.|++++|....+..... .....|+.|+++++....+ ..+ ..+++|++
T Consensus 106 l~~n~l-------~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 106 AANNNI-------SRVSC---SRGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp CCSSCC-------SEEEE---CCCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCCcc-------CCcCc---cccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 999987 22222 236889999999998876543221 2235699999996654433 334 47899999
Q ss_pred EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 236 (325)
|++++|...... ....+++|++|+++++ .++.++ .+..+++|++|++++|. ++.+.
T Consensus 174 L~L~~N~l~~~~---------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~------------ 230 (317)
T 3o53_A 174 LNLQYNFIYDVK---------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIE------------ 230 (317)
T ss_dssp EECTTSCCCEEE---------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEEC------------
T ss_pred EECCCCcCcccc---------cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchh------------
Confidence 999999875321 1134789999999999 788763 56678999999999996 33333
Q ss_pred cccccCCcccEEeccCCCCc-ceeccCcccCCCccEEeeeCCCCCCCCC
Q 048462 237 ESQDFFSNLMVIDLRHLPSL-TSICCGVVPFPSLQTISVNGCPSLRKLP 284 (325)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~~ip 284 (325)
..+..+++|+.|++.+++-. ..++.....+++|+.+++.+++.++..+
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 36778899999999998544 2444445568889999988776666443
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=3e-18 Score=161.75 Aligned_cols=229 Identities=22% Similarity=0.205 Sum_probs=120.0
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
++++|+++++ .++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.+ ..+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC----CCTTCCEEEEC
T ss_pred CCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC----CCCCCCEEECc
Confidence 3567777777 6667666554 577777777777766665 466777777777543 33443 45666677776
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc--------------cCccccCCceEEEEceeeeecccc
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK--------------SSPKLQSCIKRLAVVLMASFLLPL 148 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~l~~ 148 (325)
+|.+ ..++. .+++|+.|++.+|....++... ..+....+|+.|+++++....+|
T Consensus 110 ~N~l--------~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 110 SNPL--------THLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp SCCC--------CCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC-
T ss_pred CCcC--------CCCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc-
Confidence 6665 11111 3344555555555443332210 00001122344444433333333
Q ss_pred cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCC
Q 048462 149 DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYE 228 (325)
Q Consensus 149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 228 (325)
..+++|+.|++++|.... ++ ..+++|+.|++++| .++.++. .+++|+.|++++|. ++.+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~----------l~-~~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~l----- 236 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS----------LP-TLPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSL----- 236 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC----------CC-CCCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCC-----
T ss_pred -ccCCCCcEEECCCCCCCC----------CC-CccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcC-----
Confidence 233556666666655421 11 12345556655555 4554443 23566666666653 2211
Q ss_pred CCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCc
Q 048462 229 SPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSA 290 (325)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~ 290 (325)
+ ..+++|+.|++++| .++.++. .+++|+.|++++| .|+.+|..+..+
T Consensus 237 -------p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 237 -------P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp -------C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred -------C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 1 34566777777765 5555554 3566777777666 666666555444
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=5.9e-20 Score=161.49 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=173.9
Q ss_pred CCcEEecCCCCCCCcCchhhhCc--ccCceecCCCCcccccChhhhccccCceeeccCCCCCee-echhhhhCCCcccEE
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKL--INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAF-VPCQVISSLSSLQVF 79 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L 79 (325)
.++.++++++ .+. +..+..+ +++++|+++++.+...+..+.++++|++|++++|.+... ++.. +..+++|++|
T Consensus 48 ~~~~l~l~~~-~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGK-NLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTC-BCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEE
T ss_pred hheeeccccc-cCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCEE
Confidence 3678889888 454 5667777 889999999998876666677899999999999875544 6665 8889999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecC-cccccccccCccccCCceEEEEcee-eee--cccc-cccCC-
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLM-ASF--LLPL-DLRMD- 153 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~--~l~~-l~~l~- 153 (325)
++++|.+ ....+..+..+++|++|++++|. ... ..+........+|++|+++++ ... .++. +..++
T Consensus 124 ~L~~~~l-------~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 124 SLEGLRL-------SDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp ECTTCBC-------CHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred eCcCccc-------CHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 9999887 55677788889999999998884 332 122222223456899999877 332 2455 77889
Q ss_pred CCCeEEEcCCCC-ceeccccCCCCCccc--cccccccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhcccCC
Q 048462 154 HLETLEIDRCSL-ESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEIIGTYE 228 (325)
Q Consensus 154 ~L~~L~l~~~~~-~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 228 (325)
+|++|++++|.. .. ...++. ..+++|++|++++|..+++ +..+..+++|++|++++|..+.....
T Consensus 196 ~L~~L~l~~~~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--- 265 (336)
T 2ast_B 196 TITQLNLSGYRKNLQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL--- 265 (336)
T ss_dssp TCCEEECCSCGGGSC-------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG---
T ss_pred CCCEEEeCCCcccCC-------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH---
Confidence 999999999952 21 011222 4689999999999954654 55677899999999999974433221
Q ss_pred CCCCCccccccccCCcccEEeccCCCCcceeccC-cccC-CCccEEeeeCCCCCCCCC
Q 048462 229 SPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VVPF-PSLQTISVNGCPSLRKLP 284 (325)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~l~~c~~l~~ip 284 (325)
..+..+++|+.|++.+| + +.. ...+ ..|+.|++. |+.++.+.
T Consensus 266 --------~~l~~~~~L~~L~l~~~--i---~~~~~~~l~~~l~~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 266 --------LELGEIPTLKTLQVFGI--V---PDGTLQLLKEALPHLQIN-CSHFTTIA 309 (336)
T ss_dssp --------GGGGGCTTCCEEECTTS--S---CTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred --------HHHhcCCCCCEEeccCc--c---CHHHHHHHHhhCcceEEe-cccCcccc
Confidence 25678999999999998 2 221 1112 235666674 55777643
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=5.7e-20 Score=160.07 Aligned_cols=246 Identities=17% Similarity=0.109 Sum_probs=149.8
Q ss_pred hhCcccCceecCCCCcccccChhhhccccCceeeccCCCC-Ceeechhhhh-------CCCcccEEEecccceeeeeecc
Q 048462 22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRY-LAFVPCQVIS-------SLSSLQVFSWFSTELVELHYVD 93 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~ 93 (325)
++.+++|++|+++++.+ .+|..+... |+.|+++++.+ ...+|.. +. ++++|++|++++|.+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l------- 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEV------- 107 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBC-------
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcc-------
Confidence 44566777777777777 667665544 77777777655 2344544 43 677777777777776
Q ss_pred Cccchhhh--ccCCCcceEEEEecCcccccccccCc--cccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCce
Q 048462 94 STSVLAEL--ESLENIHDISVTLCNVDAVNRVKSSP--KLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLES 167 (325)
Q Consensus 94 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~ 167 (325)
....+..+ ..+++|+.|++++|.....+...... ....+|+.|+++++....++. +..+++|++|++++|....
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 34445544 66777777777777766542211100 011457777777665555552 7778888888888887431
Q ss_pred e-ccccCCCCCccccccccccEEEecCCCCCCcccc-----ccCCCCccEEEEeccCCchhhcccCCCCCCCcccccccc
Q 048462 168 K-NDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW-----IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF 241 (325)
Q Consensus 168 ~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 241 (325)
. .. ...+....+++|++|+++++ .++.++. +..+++|++|++++|........ .....
T Consensus 188 ~~~~----~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------~~~~~ 251 (312)
T 1wwl_A 188 ERGL----ISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-----------PSCDW 251 (312)
T ss_dssp HHHH----HHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-----------SCCCC
T ss_pred chHH----HHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-----------hhhhh
Confidence 0 00 00111145678888888888 6764332 23567888888888753222111 23345
Q ss_pred CCcccEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEech
Q 048462 242 FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIRGS 300 (325)
Q Consensus 242 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~~~ 300 (325)
+++|++|++++| .++.++.... ++|++|+++++ +++.+|. +..+ ..++.++..
T Consensus 252 l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l-~~L~~L~L~ 304 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDEL-PQVGNLSLK 304 (312)
T ss_dssp CTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTS-CEEEEEECT
T ss_pred cCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh-HhhC-CCCCEEecc
Confidence 678888888886 5666665443 77888888776 7777765 4444 555555443
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=4.4e-18 Score=155.54 Aligned_cols=120 Identities=21% Similarity=0.199 Sum_probs=80.1
Q ss_pred ccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCC
Q 048462 26 INLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLE 105 (325)
Q Consensus 26 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 105 (325)
++|++|++++|.++.+| .+.++++|++|++++|.+. .+|.. ..+|++|++++|.+ . ..+ .+..++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l-------~-~l~-~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQL-------E-ELP-ELQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCC-------S-SCC-CCTTCT
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcC-------C-cCc-cccCCC
Confidence 45666666666665565 3666666666666665433 24432 23666666666665 2 233 577888
Q ss_pred CcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCc
Q 048462 106 NIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLE 166 (325)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 166 (325)
+|+.|++++|....++... ..|+.|+++++....+|.+..+++|++|++++|...
T Consensus 196 ~L~~L~l~~N~l~~l~~~~------~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 196 FLTAIYADNNSLKKLPDLP------LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp TCCEEECCSSCCSSCCCCC------TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCCcCCCCc------CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC
Confidence 8888888888766544322 368888888776667777888889999999888754
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=3.8e-18 Score=145.57 Aligned_cols=219 Identities=16% Similarity=0.177 Sum_probs=135.5
Q ss_pred ecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccccee
Q 048462 8 DLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELV 87 (325)
Q Consensus 8 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 87 (325)
++..+ .+... .....+++|+.|+++++.++.++. +..+++|++|++++|.+.. ++ . +..+++|++|++++|.+
T Consensus 25 ~l~~~-~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l- 97 (272)
T 3rfs_A 25 NLKKK-SVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQL- 97 (272)
T ss_dssp HHTCS-CTTSE-ECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCC-
T ss_pred HhcCc-ccccc-cccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCcc-
Confidence 44444 34443 235567788888888887776653 7778888888888865443 44 3 77888888888888877
Q ss_pred eeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCce
Q 048462 88 ELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLES 167 (325)
Q Consensus 88 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 167 (325)
....+..+..+++|+.|++++|....+.. ..+..+++|++|++++|....
T Consensus 98 ------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 98 ------QSLPNGVFDKLTNLKELVLVENQLQSLPD------------------------GVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp ------CCCCTTTTTTCTTCCEEECTTSCCCCCCT------------------------TTTTTCTTCCEEECCSSCCCC
T ss_pred ------CccChhHhcCCcCCCEEECCCCcCCccCH------------------------HHhccCCCCCEEECCCCccCc
Confidence 44444456777888888887776543211 113456667777777765421
Q ss_pred eccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcc
Q 048462 168 KNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNL 245 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 245 (325)
.. ...+ ..+++|++|++++| .++.++. +..+++|++|++++|.. +.+.. ..+..+++|
T Consensus 148 ~~-----~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L 207 (272)
T 3rfs_A 148 LP-----KGVF--DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPD-----------GVFDRLTSL 207 (272)
T ss_dssp CC-----TTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-SCCCT-----------TTTTTCTTC
T ss_pred cC-----HHHh--ccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcC-CccCH-----------HHHhCCcCC
Confidence 10 0011 34667777777777 5666543 45677777777777753 22221 245667777
Q ss_pred cEEeccCCCCcceeccCcccCCCccEEeeeCCCCCCCCCCCCCCc
Q 048462 246 MVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPSLRKLPLNSGSA 290 (325)
Q Consensus 246 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ip~~~~~~ 290 (325)
+.|++.+|+- .+.++.|+.+++..+..-..+|..+...
T Consensus 208 ~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 208 QYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence 7777777631 2346677777776653333566666555
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=5.2e-18 Score=141.87 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=129.9
Q ss_pred CCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc-cceeeeee
Q 048462 14 DLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS-TELVELHY 91 (325)
Q Consensus 14 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~ 91 (325)
.++.+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|...+.++...+.++++|++|++++ +.+
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l----- 93 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL----- 93 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-----
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-----
Confidence 3666666 33 378888888888877766 5677888888888886545555543377788888888887 666
Q ss_pred ccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCC---eEEEcCC-CCce
Q 048462 92 VDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLE---TLEIDRC-SLES 167 (325)
Q Consensus 92 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~---~L~l~~~-~~~~ 167 (325)
....+..+..+++|+.|++++|....++. +..+++|+ .|++++| ....
T Consensus 94 --~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 94 --TYIDPDALKELPLLKFLGIFNTGLKMFPD--------------------------LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp --CEECTTSEECCTTCCEEEEEEECCCSCCC--------------------------CTTCCBCCSEEEEEEESCTTCCE
T ss_pred --eEcCHHHhCCCCCCCEEeCCCCCCccccc--------------------------cccccccccccEEECCCCcchhh
Confidence 33334456677788888887776554432 23444444 7777776 3322
Q ss_pred eccccCCCCCcccccccccc-EEEecCCCCCCccccc-cCCCCccEEEEeccCCchhhcccCCCCCCCccccccccC-Cc
Q 048462 168 KNDYFGDQGRTRTYCFRNLR-HLSVKTCPCMTDLKWI-RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFF-SN 244 (325)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 244 (325)
.. .+.+ ..+++|+ +|+++++ .++.++.. ...++|++|++++|+.++.+.. ..+..+ ++
T Consensus 146 i~-----~~~~--~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~ 206 (239)
T 2xwt_C 146 IP-----VNAF--QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-----------DAFGGVYSG 206 (239)
T ss_dssp EC-----TTTT--TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-----------TTTTTCSBC
T ss_pred cC-----cccc--cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-----------HHhhccccC
Confidence 11 1111 3466777 7777777 56665431 1236777777777754544432 244556 77
Q ss_pred ccEEeccCCCCcceeccCcccCCCccEEeeeCCCC
Q 048462 245 LMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCPS 279 (325)
Q Consensus 245 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 279 (325)
|+.|+++++ .++.++.. .+++|+.|.+.++..
T Consensus 207 L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 207 PSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred CcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence 888888875 56666554 577888888877654
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.5e-18 Score=146.04 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=118.5
Q ss_pred CCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeec
Q 048462 14 DLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYV 92 (325)
Q Consensus 14 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 92 (325)
.+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|++++|.+
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l------ 88 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPI------ 88 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCC------
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-ccCCcCCCEEECCCCcc------
Confidence 4445555443 356666666666655544 4566666666666665443333333 66666666666666665
Q ss_pred cCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee--cccc-cccCCCCCeEEEcCCCCceec
Q 048462 93 DSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF--LLPL-DLRMDHLETLEIDRCSLESKN 169 (325)
Q Consensus 93 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~-l~~l~~L~~L~l~~~~~~~~~ 169 (325)
....+..+..+++|+.|++.++....+.... .....+|+.|+++++... .+|. +..+++|++|++++|......
T Consensus 89 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 89 -QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp -CEECTTTTTTCTTCCEEECTTSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred -CccChhhhcCCccccEEECCCCCccccCchh--cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 3333445566666666666666554433211 111234666666654433 2444 777888888888888754221
Q ss_pred cccCCCCCcccccccccc----EEEecCCCCCCccc-cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCc
Q 048462 170 DYFGDQGRTRTYCFRNLR----HLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSN 244 (325)
Q Consensus 170 ~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (325)
. ..+ ..+++|+ +|+++++ .++.++ ......+|++|++++|. ++.+.. ..+..+++
T Consensus 166 ~-----~~~--~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~ 225 (276)
T 2z62_A 166 C-----TDL--RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPD-----------GIFDRLTS 225 (276)
T ss_dssp G-----GGG--HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCT-----------TTTTTCCS
T ss_pred H-----HHh--hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCH-----------hHhccccc
Confidence 1 111 2334444 7788877 666653 23334578888888875 333322 24567888
Q ss_pred ccEEeccCCC
Q 048462 245 LMVIDLRHLP 254 (325)
Q Consensus 245 L~~L~l~~~~ 254 (325)
|+.|++.+++
T Consensus 226 L~~L~l~~N~ 235 (276)
T 2z62_A 226 LQKIWLHTNP 235 (276)
T ss_dssp CCEEECCSSC
T ss_pred ccEEEccCCc
Confidence 8888888764
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=5.8e-19 Score=153.67 Aligned_cols=218 Identities=16% Similarity=0.131 Sum_probs=152.6
Q ss_pred CcEEecCCCCCCC--cCchhhh-------CcccCceecCCCCccc-ccChhh--hccccCceeeccCCCCCeeechhhhh
Q 048462 4 LAVLDLSYNLDLV--KLPEAIG-------KLINLCYLNLSNTRIG-QLPTGI--TYLKNLKILRLDGMRYLAFVPCQVIS 71 (325)
Q Consensus 4 L~~L~l~~~~~~~--~lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~ 71 (325)
|++|++++| .++ .+|..+. .+++|++|++++|.++ .+|..+ ..+++|++|++++|.+... |.. +.
T Consensus 65 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~ 141 (312)
T 1wwl_A 65 IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW-LA 141 (312)
T ss_dssp HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH-HH
T ss_pred Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH-HH
Confidence 566778877 554 3566555 6888888888888885 677765 7888888888888766554 655 66
Q ss_pred CC-----CcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc-c-CccccCCceEEEEceeeee
Q 048462 72 SL-----SSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK-S-SPKLQSCIKRLAVVLMASF 144 (325)
Q Consensus 72 ~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~ 144 (325)
.+ ++|++|++++|.+ ....+..+..+++|+.|++++|...+..... . .......|+.|+++++...
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHS-------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSC-------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred HHHHhhcCCCcEEEeeCCCC-------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 65 8888888888887 4555577888888888888888754321111 0 1122345888888876554
Q ss_pred cccc-----cccCCCCCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462 145 LLPL-----DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 145 ~l~~-----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~ 218 (325)
.++. +..+++|++|++++|...... ..+. ..+++|++|+++++ .++.++.... ++|++|++++|.
T Consensus 215 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAA-------GAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYNR 285 (312)
T ss_dssp CHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------CCSCCCCCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSSC
T ss_pred chHHHHHHHHhcCCCCCEEECCCCcCCccc-------chhhhhhcCCCCEEECCCC-ccChhhhhcc-CCceEEECCCCC
Confidence 3332 356789999999999864211 0111 34689999999999 7887764332 889999999986
Q ss_pred CchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462 219 RLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (325)
. +.+ + .+..+++|++|++.+++
T Consensus 286 l-~~~------------p-~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 286 L-DRN------------P-SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp C-CSC------------C-CTTTSCEEEEEECTTCT
T ss_pred C-CCC------------h-hHhhCCCCCEEeccCCC
Confidence 3 322 2 36788999999999873
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.4e-17 Score=157.27 Aligned_cols=218 Identities=21% Similarity=0.176 Sum_probs=143.9
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++|++|++++| .++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+. .+|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEEC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEEC
Confidence 45777777777 6777665 45677777777777766665 5666777777665332 2332 2344555555
Q ss_pred cccceeeeeeccCccchhhh-----------------ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeee
Q 048462 82 FSTELVELHYVDSTSVLAEL-----------------ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASF 144 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l-----------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 144 (325)
++|.+ ..++..+ ...++|+.|++.+|....++ ....+|+.|+++++...
T Consensus 129 ~~N~l--------~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 129 FGNQL--------TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CSSCC--------SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCS
T ss_pred CCCCC--------CcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc------ccCCCCcEEECCCCCCC
Confidence 55544 1111110 01234555555555444332 22356899999977666
Q ss_pred cccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhc
Q 048462 145 LLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEII 224 (325)
Q Consensus 145 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~ 224 (325)
.+|. .+++|+.|++++|... .++ ..+++|++|+++++ .++.++ ..+++|+.|++++|. ++.+.
T Consensus 195 ~l~~--~~~~L~~L~L~~N~l~----------~l~-~~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp 257 (622)
T 3g06_A 195 SLPT--LPSELYKLWAYNNRLT----------SLP-ALPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP 257 (622)
T ss_dssp CCCC--CCTTCCEEECCSSCCS----------SCC-CCCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC
T ss_pred CCCC--ccchhhEEECcCCccc----------ccC-CCCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC
Confidence 6665 3578999999998764 222 23578999999998 788777 557899999999985 33321
Q ss_pred ccCCCCCCCccccccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeCCC
Q 048462 225 GTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGCP 278 (325)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 278 (325)
. .+++|+.|++++| .+..+|.....+++|+.|++++|+
T Consensus 258 ------------~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 ------------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ------------C---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ------------c---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 1 5788999999997 677887777789999999999884
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=3e-17 Score=139.85 Aligned_cols=172 Identities=16% Similarity=0.240 Sum_probs=101.9
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
..+.++++++ .++.+|..+. .+|++|++++|.++.++. .+.++++|++|++++|.+. .++...+..+++|++|++
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 4567788877 6777776554 577888888887776654 5677888888888775544 445442567788888888
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID 161 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~ 161 (325)
++|.+ ....+..+..+++|+.|++++|....+.. ..+..+++|++|+++
T Consensus 93 ~~n~l-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 93 TDNKL-------QALPIGVFDQLVNLAELRLDRNQLKSLPP------------------------RVFDSLTKLTYLSLG 141 (270)
T ss_dssp CSSCC-------CCCCTTTTTTCSSCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECC
T ss_pred CCCcC-------CcCCHhHcccccCCCEEECCCCccCeeCH------------------------HHhCcCcCCCEEECC
Confidence 88776 33334455667777777777765443211 013355556666665
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEecc
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYC 217 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~ 217 (325)
+|...... ...+ ..+++|++|+++++ .++.++. +..+++|++|++++|
T Consensus 142 ~n~l~~~~-----~~~~--~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 142 YNELQSLP-----KGVF--DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp SSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccC-----HhHc--cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC
Confidence 55432110 0001 23455666666555 4554432 344555666666555
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=2.1e-17 Score=141.20 Aligned_cols=214 Identities=18% Similarity=0.100 Sum_probs=146.9
Q ss_pred ecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceE
Q 048462 31 LNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDI 110 (325)
Q Consensus 31 L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 110 (325)
.+-.+..+.++|..+. ++|++|++++|.+....+.. +..+++|++|++++|.+ .......+..+++|+.|
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEI-------QTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTT-TTTCTTCSEEECTTCCC-------CEECTTTTTTCTTCCEE
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhH-hccccCCcEEECCCCcC-------CccCHHHccCCcCCCEE
Confidence 3344445677887653 57999999997665544445 89999999999999987 44445578899999999
Q ss_pred EEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCccccccccccE
Q 048462 111 SVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRH 188 (325)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 188 (325)
++++|....+... ......+|+.|+++++....++. +..+++|++|++++|......+ +..+ ..+++|++
T Consensus 82 ~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l----~~~~--~~l~~L~~ 153 (276)
T 2z62_A 82 ILTGNPIQSLALG--AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL----PEYF--SNLTNLEH 153 (276)
T ss_dssp ECTTCCCCEECTT--TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC----CGGG--GGCTTCCE
T ss_pred ECCCCccCccChh--hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC----chhh--ccCCCCCE
Confidence 9999987655321 11223458889888766555554 7788899999999887642111 1111 56788999
Q ss_pred EEecCCCCCCccc--cccCCCCcc----EEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcceeccC
Q 048462 189 LSVKTCPCMTDLK--WIRYAPNLQ----FLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCG 262 (325)
Q Consensus 189 L~l~~~~~l~~l~--~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 262 (325)
|+++++ .++.++ .+..+++|+ +|++++|.. +.+.. ......+|+.|++++| .++.++..
T Consensus 154 L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~~~~~------------~~~~~~~L~~L~L~~n-~l~~~~~~ 218 (276)
T 2z62_A 154 LDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQP------------GAFKEIRLKELALDTN-QLKSVPDG 218 (276)
T ss_dssp EECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCC-CEECT------------TSSCSCCEEEEECCSS-CCSCCCTT
T ss_pred EECCCC-CCCcCCHHHhhhhhhccccceeeecCCCcc-cccCc------------cccCCCcccEEECCCC-ceeecCHh
Confidence 999988 677653 333444444 788888753 33322 2333447999999987 57766654
Q ss_pred c-ccCCCccEEeeeCC
Q 048462 263 V-VPFPSLQTISVNGC 277 (325)
Q Consensus 263 ~-~~~~~L~~L~l~~c 277 (325)
. ..+++|+.|+++++
T Consensus 219 ~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTTTCCSCCEEECCSS
T ss_pred HhcccccccEEEccCC
Confidence 3 45888999999876
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=6e-19 Score=155.05 Aligned_cols=200 Identities=17% Similarity=0.167 Sum_probs=153.8
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+++++|+++++ .++..+..+..+++|++|++++|.+. .++..+.++++|++|++++|......+.. ++.+++|++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEE
Confidence 57899999999 77777666778999999999999885 38888899999999999998877677776 8999999999
Q ss_pred Eeccc-ceeeeeeccCc-cchhhhccCCCcceEEEEec-CcccccccccCccccC-CceEEEEceeee----ecccc-cc
Q 048462 80 SWFST-ELVELHYVDST-SVLAELESLENIHDISVTLC-NVDAVNRVKSSPKLQS-CIKRLAVVLMAS----FLLPL-DL 150 (325)
Q Consensus 80 ~l~~~-~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~-~L~~L~l~~~~~----~~l~~-l~ 150 (325)
++++| .+ .. ..+..+..+++|+.|++++| ..... .+........ +|++|+++++.. ..++. +.
T Consensus 148 ~L~~~~~l-------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 148 NLSGCSGF-------SEFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp ECTTCBSC-------CHHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred ECCCCCCC-------CHHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 99999 44 33 35666888999999999999 65531 1111112233 699999998752 34455 67
Q ss_pred cCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCc--cccccCCCCccEEEEecc
Q 048462 151 RMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYC 217 (325)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~ 217 (325)
.+++|+.|++++|..+.... ...+ ..+++|++|++++|..+.+ +..+..+++|++|++++|
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~----~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDC----FQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGG----GGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hCCCCCEEeCCCCCcCCHHH----HHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 89999999999998531100 1111 5679999999999965544 235778999999999998
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=5e-19 Score=158.66 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=128.0
Q ss_pred cCchhhhCcccCceecCCCCcccc-----cChhhhccccCceeeccCCCC---Ceeechh------hhhCCCcccEEEec
Q 048462 17 KLPEAIGKLINLCYLNLSNTRIGQ-----LPTGITYLKNLKILRLDGMRY---LAFVPCQ------VISSLSSLQVFSWF 82 (325)
Q Consensus 17 ~lp~~~~~l~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~l~~~~~---~~~~~~~------~~~~l~~L~~L~l~ 82 (325)
.++..+..+++|++|++++|.++. ++..+.++++|++|++++|.. .+.+|.. .+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455556666677777777766532 333355667777777766422 2233333 02566677777777
Q ss_pred ccceeeeeeccCc----cchhhhccCCCcceEEEEecCccccc--ccccCcccc---------CCceEEEEceeee--ec
Q 048462 83 STELVELHYVDST----SVLAELESLENIHDISVTLCNVDAVN--RVKSSPKLQ---------SCIKRLAVVLMAS--FL 145 (325)
Q Consensus 83 ~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~---------~~L~~L~l~~~~~--~~ 145 (325)
+|.+ .. .++..+..+++|++|++++|...... .+....... ..|++|+++++.. ..
T Consensus 103 ~n~l-------~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 103 DNAF-------GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp SCCC-------CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred CCcC-------CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 7665 22 24455666677777777666553211 111110001 3466777765433 23
Q ss_pred cc----ccccCCCCCeEEEcCCCCceeccccCCCCCcc-c-cccccccEEEecCCCCCC-----cc-ccccCCCCccEEE
Q 048462 146 LP----LDLRMDHLETLEIDRCSLESKNDYFGDQGRTR-T-YCFRNLRHLSVKTCPCMT-----DL-KWIRYAPNLQFLY 213 (325)
Q Consensus 146 l~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~-~~~~~L~~L~l~~~~~l~-----~l-~~~~~~~~L~~L~ 213 (325)
++ .+..+++|++|++++|...+... ....+ . ..+++|++|++++| .++ .+ ..+..+++|++|+
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~----~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGI----EHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHH----HHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHH----HHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEE
Confidence 33 24566777777777776431110 00111 1 35667777777777 453 22 2345667777777
Q ss_pred EeccCCchhhcccCCCCCCCcccccc--ccCCcccEEeccCCCCcce-----eccCc-ccCCCccEEeeeCCCCCC
Q 048462 214 VSYCPRLSEIIGTYESPGTSEIEESQ--DFFSNLMVIDLRHLPSLTS-----ICCGV-VPFPSLQTISVNGCPSLR 281 (325)
Q Consensus 214 l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c~~l~ 281 (325)
+++|..-..... .++..+ +.+++|+.|++++| .+.. ++... ..+++|+.|++++| .++
T Consensus 251 L~~n~i~~~~~~--------~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~ 316 (386)
T 2ca6_A 251 LNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFS 316 (386)
T ss_dssp CTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSC
T ss_pred CCCCCCchhhHH--------HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCC
Confidence 777753222100 011233 23677777777776 3433 44443 33677777777766 344
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.4e-18 Score=160.31 Aligned_cols=231 Identities=17% Similarity=0.131 Sum_probs=172.6
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++|++|++++| .++.+ |..++.+++|++|++++|.++..+. +..+++|++|++++|.+. .++ ..++|++|+
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEE
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCC-----CCCCcCEEE
Confidence 48999999999 78877 5789999999999999999976655 899999999999997543 333 348999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec--ccccc-cCCCCCe
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL--LPLDL-RMDHLET 157 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~l~-~l~~L~~ 157 (325)
+++|.+ ....+ ..+++|+.|++++|......... .....+|+.|+++++.... .+.+. .+++|+.
T Consensus 106 L~~N~l-------~~~~~---~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 106 AANNNI-------SRVSC---SRGQGKKNIYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CCSSCC-------CCEEE---CCCSSCEEEECCSSCCCSGGGBC--GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CcCCcC-------CCCCc---cccCCCCEEECCCCCCCCCCchh--hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 999987 22222 24688999999999877653321 1224569999999655443 22354 7899999
Q ss_pred EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcc-ccccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL-KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 236 (325)
|++++|..... .+...+++|++|+++++ .++.+ +.+..+++|+.|++++|.. ..+ +
T Consensus 174 L~Ls~N~l~~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l-~~l------------p 230 (487)
T 3oja_A 174 LNLQYNFIYDV---------KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL-VLI------------E 230 (487)
T ss_dssp EECTTSCCCEE---------ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC-CEE------------C
T ss_pred EecCCCccccc---------cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcC-ccc------------c
Confidence 99999987532 11135789999999999 78876 4567789999999999863 333 3
Q ss_pred cccccCCcccEEeccCCCCc-ceeccCcccCCCccEEeee
Q 048462 237 ESQDFFSNLMVIDLRHLPSL-TSICCGVVPFPSLQTISVN 275 (325)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~ 275 (325)
..+..+++|+.|++.+|+-. ..++.....++.|+.+++.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 46778899999999998543 2333334456777777764
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.1e-17 Score=143.52 Aligned_cols=170 Identities=17% Similarity=0.193 Sum_probs=108.5
Q ss_pred hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462 22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 101 (325)
.+.+++|++|+++++.++.++ .+.++++|++|++++|.+ ..++. +..+++|++|++++|.+ .. ...+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~--~~~l~~L~~L~L~~n~l-------~~--~~~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAP--LKNLTKITELELSGNPL-------KN--VSAI 103 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCCSCCEEECCSCCC-------SC--CGGG
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-CCChh--HccCCCCCEEEccCCcC-------CC--chhh
Confidence 456788888888888887776 578888888888888654 34444 77888888888888877 22 2357
Q ss_pred ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccc
Q 048462 102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY 181 (325)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 181 (325)
..+++|+.|++++|....++.+. ...+|+.|+++++....++.+..+++|+.|++++|...+. .+..
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~l~ 170 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---------TPLA 170 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGT----TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------GGGT
T ss_pred cCCCCCCEEECCCCCCCCchhhc----CCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC---------hhhc
Confidence 77888888888887766544322 1233566666655544455555666666666666554211 1113
Q ss_pred ccccccEEEecCCCCCCccccccCCCCccEEEEeccC
Q 048462 182 CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~ 218 (325)
.+++|++|+++++ .+++++.+..+++|++|++++|.
T Consensus 171 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 171 NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc
Confidence 4556666666665 55555555556666666666554
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=1.6e-16 Score=151.08 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=74.5
Q ss_pred ccccccEEEecCCCCCCcc--ccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCccee
Q 048462 182 CFRNLRHLSVKTCPCMTDL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTSI 259 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 259 (325)
.+++|+.|+++++.....+ ..+..+++|++|++++|. ++.+. +..+..+++|++|++++| +++.+
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~-----------~~~f~~l~~L~~L~Ls~N-~l~~l 533 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS-----------PTAFNSLSSLQVLNMSHN-NFFSL 533 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC-----------TTTTTTCTTCCEEECTTS-CCCBC
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcC-----------hHHHcCCCCCCEEECCCC-cCCCC
Confidence 4567777777776333332 245667888888888885 33332 246788999999999997 67766
Q ss_pred ccC-cccCCCccEEeeeCCCCCCCCC-CCCCCcccceeEE-------echHHHHhhcccC
Q 048462 260 CCG-VVPFPSLQTISVNGCPSLRKLP-LNSGSAKNSLNAI-------RGSREWWDRLEWE 310 (325)
Q Consensus 260 ~~~-~~~~~~L~~L~l~~c~~l~~ip-~~~~~~~~~l~~~-------~~~~~~~~~~~~~ 310 (325)
+.. ...+++|+.|+++++ +|+.++ ..+..+...+..+ .|+++...-.+|-
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp CCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred ChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 543 446899999999987 777664 4444443344443 3555543344554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=9.5e-17 Score=136.72 Aligned_cols=177 Identities=21% Similarity=0.295 Sum_probs=136.1
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhh-hccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+++++|++++| .++.++ ..+.++++|++|++++|.++.+|..+ .++++|++|++++|.+. .++...+..+++|++|
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEE
Confidence 46899999999 788886 47999999999999999998888764 78999999999997655 4554437899999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~ 159 (325)
++++|.+ ....+..+..+++|+.|++++|....++. ..+..+++|+.|+
T Consensus 115 ~l~~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 115 RLDRNQL-------KSLPPRVFDSLTKLTYLSLGYNELQSLPK------------------------GVFDKLTSLKELR 163 (270)
T ss_dssp ECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEE
T ss_pred ECCCCcc-------CeeCHHHhCcCcCCCEEECCCCcCCccCH------------------------hHccCCcccceeE
Confidence 9999988 45555667889999999998886554321 1145678888888
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCC
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPR 219 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~ 219 (325)
+++|...... ...+ ..+++|++|+++++ .++.++. +..+++|+.|++++|+.
T Consensus 164 L~~n~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 164 LYNNQLKRVP-----EGAF--DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCSCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ecCCcCcEeC-----hhHh--ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 8888754211 1111 35788999999888 7777653 56688899999888863
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.9e-16 Score=136.20 Aligned_cols=195 Identities=17% Similarity=0.143 Sum_probs=93.7
Q ss_pred CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhcc
Q 048462 24 KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELES 103 (325)
Q Consensus 24 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 103 (325)
+++++++++++++.++++|..+. ++++.|++++|.+....+.. +..+++|++|++++|.+ . ..+. ...
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l-------~-~~~~-~~~ 75 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAEL-------T-KLQV-DGT 75 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCC-------C-EEEC-CSC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCcc-------C-cccC-CCC
Confidence 34444555554444444444332 34455555554433333333 44455555555555444 1 1111 133
Q ss_pred CCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCeEEEcCCCCceeccccCCCCCcccc
Q 048462 104 LENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY 181 (325)
Q Consensus 104 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 181 (325)
+++|+.|++++|....++... ....+|+.|+++++....++. +..+++|++|++++|...... .+.+ .
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~---~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~--~ 145 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLG---QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-----PGLL--T 145 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCT---TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-----TTTT--T
T ss_pred CCcCCEEECCCCcCCcCchhh---ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-----hhhc--c
Confidence 444444444444433222110 111123333333322222322 556777777777777653111 0111 3
Q ss_pred ccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462 182 CFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (325)
.+++|+.|+++++ +++.++. +..+++|++|++++|.. +.+. ..+...++|+.+++.+++
T Consensus 146 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip------------~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 146 PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSL-YTIP------------KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCC-CCCC------------TTTTTTCCCSEEECCSCC
T ss_pred cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcC-CccC------------hhhcccccCCeEEeCCCC
Confidence 4667777777777 6666653 44577777777777752 2222 344555677777777653
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.8e-17 Score=137.44 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=136.6
Q ss_pred CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCc-ccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTR-IGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~-l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
++|++|++++| .++.+|. .+..+++|++|++++|. ++.++. .+.++++|++|++++|+....++...+..+++|++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 46899999999 8998865 78899999999999997 888876 57899999999999844445566433889999999
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcc---eEEEEec-CcccccccccCccccCCceEEEEceeeeecccccccCCC
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIH---DISVTLC-NVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDH 154 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~ 154 (325)
|++++|.+ . .++. +..+++|+ .|++++| ....++. ..+..+++
T Consensus 110 L~l~~n~l-------~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------------------------~~~~~l~~ 156 (239)
T 2xwt_C 110 LGIFNTGL-------K-MFPD-LTKVYSTDIFFILEITDNPYMTSIPV------------------------NAFQGLCN 156 (239)
T ss_dssp EEEEEECC-------C-SCCC-CTTCCBCCSEEEEEEESCTTCCEECT------------------------TTTTTTBS
T ss_pred EeCCCCCC-------c-cccc-cccccccccccEEECCCCcchhhcCc------------------------ccccchhc
Confidence 99999987 2 2333 66666666 8888887 5443321 11446667
Q ss_pred CC-eEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCC-CCccEEEEeccCCchhhcccCCCC
Q 048462 155 LE-TLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYA-PNLQFLYVSYCPRLSEIIGTYESP 230 (325)
Q Consensus 155 L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~ 230 (325)
|+ .|++++|....+.. ..+ ..++|++|++++++.++.++ .+..+ ++|+.|++++|.. +.+..
T Consensus 157 L~~~L~l~~n~l~~i~~-----~~~---~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~----- 222 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQG-----YAF---NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPS----- 222 (239)
T ss_dssp SEEEEECCSCCCCEECT-----TTT---TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCC-----
T ss_pred ceeEEEcCCCCCcccCH-----hhc---CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCCh-----
Confidence 77 77777776532211 111 12577888887774466653 34556 7788888877652 33221
Q ss_pred CCCccccccccCCcccEEeccCCCC
Q 048462 231 GTSEIEESQDFFSNLMVIDLRHLPS 255 (325)
Q Consensus 231 ~~~~~~~~~~~~~~L~~L~l~~~~~ 255 (325)
..|++|+.|.+.++..
T Consensus 223 ---------~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 223 ---------KGLEHLKELIARNTWT 238 (239)
T ss_dssp ---------TTCTTCSEEECTTC--
T ss_pred ---------hHhccCceeeccCccC
Confidence 2677788888777643
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1e-16 Score=138.03 Aligned_cols=170 Identities=17% Similarity=0.213 Sum_probs=98.8
Q ss_pred hCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhc
Q 048462 23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELE 102 (325)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 102 (325)
..+++|++|++++|.++.++. +..+++|++|++++|.+.. ++. +..+++|++|++++|.+ .. +..+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l-------~~--~~~l~ 109 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKV-------KD--LSSLK 109 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCC-------CC--GGGGT
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcC-------CC--Chhhc
Confidence 345556666666655555532 5555666666665543332 332 45556666666666554 11 22355
Q ss_pred cCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccc
Q 048462 103 SLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYC 182 (325)
Q Consensus 103 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 182 (325)
.+++|+.|++++|....++.+.. ..+|+.|+++++....++.+..+++|+.|++++|...+ ..+...
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~---------~~~l~~ 176 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVH----LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---------IVPLAG 176 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGG----CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC---------CGGGTT
T ss_pred cCCCCCEEECCCCcCCCChhhcC----CCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc---------chhhcC
Confidence 55566666665555444322211 12345555554444344456677888888888887532 112256
Q ss_pred cccccEEEecCCCCCCccccccCCCCccEEEEeccCC
Q 048462 183 FRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPR 219 (325)
Q Consensus 183 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 219 (325)
+++|++|+++++ .+++++.+..+++|+.|++++|+.
T Consensus 177 l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 177 LTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred CCccCEEECCCC-cCCCChhhccCCCCCEEECcCCcc
Confidence 778888888888 778777777888888888888753
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=4.7e-16 Score=137.44 Aligned_cols=236 Identities=13% Similarity=0.115 Sum_probs=169.0
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE-Eec
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF-SWF 82 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L-~l~ 82 (325)
++++-+++ .++++|..+. +++++|++++|+++.+|.. +.++++|++|++++|.+.+.++..++.++++++++ .+.
T Consensus 12 ~~v~C~~~-~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEEST-TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCC-CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777 7899997663 6899999999999999875 78999999999999888888886657889988764 445
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEcee-eeecccc--cccC-CCCCeE
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLM-ASFLLPL--DLRM-DHLETL 158 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~--l~~l-~~L~~L 158 (325)
.+.+ ....+..+..+++|+.|++.+|....++........ .+..+++.+. ....++. +..+ ..++.|
T Consensus 89 ~N~l-------~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 89 ANNL-------LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp ETTC-------CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS--SCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred CCcc-------cccCchhhhhccccccccccccccccCCchhhcccc--hhhhhhhccccccccccccchhhcchhhhhh
Confidence 5666 344466788999999999999988776554333222 3566777543 2223333 4444 367888
Q ss_pred EEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCccc
Q 048462 159 EIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIE 236 (325)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 236 (325)
++++|...++.. +. ....+|+++++.++..++.++. +..+++|++|++++|. ++.+..
T Consensus 160 ~L~~N~i~~i~~-----~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~----------- 219 (350)
T 4ay9_X 160 WLNKNGIQEIHN-----SA---FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS----------- 219 (350)
T ss_dssp ECCSSCCCEECT-----TS---STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-----------
T ss_pred ccccccccCCCh-----hh---ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-----------
Confidence 888887643221 11 2345788888887667887763 5678888999988885 444322
Q ss_pred cccccCCcccEEeccCCCCcceeccCcccCCCccEEeeeC
Q 048462 237 ESQDFFSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNG 276 (325)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 276 (325)
+.+.+|+.|.+.++..++.+|. ...+++|+.+++.+
T Consensus 220 ---~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ---YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ---SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ---hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 3467777887777777887775 45688888888854
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1e-18 Score=156.63 Aligned_cols=252 Identities=14% Similarity=0.137 Sum_probs=174.2
Q ss_pred CCCCcEEecCCCCCCCc-----CchhhhCcccCceecCCCCccc----ccChhh-------hccccCceeeccCCCCCe-
Q 048462 1 MHALAVLDLSYNLDLVK-----LPEAIGKLINLCYLNLSNTRIG----QLPTGI-------TYLKNLKILRLDGMRYLA- 63 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~----~lp~~l-------~~l~~L~~L~l~~~~~~~- 63 (325)
+++|++|++++| .++. ++..+..+++|++|++++|.+. .+|.++ .++++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 478999999999 6764 3344678999999999997543 445554 689999999999987766
Q ss_pred ---eechhhhhCCCcccEEEecccceeeeeeccCcc----chhhhccC---------CCcceEEEEecCcc--ccccccc
Q 048462 64 ---FVPCQVISSLSSLQVFSWFSTELVELHYVDSTS----VLAELESL---------ENIHDISVTLCNVD--AVNRVKS 125 (325)
Q Consensus 64 ---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~~~--~~~~~~~ 125 (325)
.++.. +..+++|++|++++|.+ ... +...+..+ ++|+.|++++|... .++.+..
T Consensus 110 ~~~~l~~~-l~~~~~L~~L~L~~n~l-------~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 110 AQEPLIDF-LSKHTPLEHLYLHNNGL-------GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp THHHHHHH-HHHCTTCCEEECCSSCC-------HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred HHHHHHHH-HHhCCCCCEEECcCCCC-------CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 46666 89999999999999987 322 23334444 89999999999875 3333322
Q ss_pred CccccCCceEEEEceeeee------ccc-ccccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCC
Q 048462 126 SPKLQSCIKRLAVVLMASF------LLP-LDLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPC 196 (325)
Q Consensus 126 ~~~~~~~L~~L~l~~~~~~------~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 196 (325)
......+|++|+++++... ..+ .+..+++|+.|++++|...+... ..++. ..+++|++|++++| .
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~-----~~l~~~l~~~~~L~~L~L~~n-~ 255 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-----SALAIALKSWPNLRELGLNDC-L 255 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-----HHHHHHGGGCTTCCEEECTTC-C
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH-----HHHHHHHccCCCcCEEECCCC-C
Confidence 2233447999999976544 344 57889999999999998631110 11221 46789999999999 6
Q ss_pred CCcc------ccc--cCCCCccEEEEeccCCchhhcccCCCCCCCcccccc-ccCCcccEEeccCCCCcceec---cCcc
Q 048462 197 MTDL------KWI--RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQ-DFFSNLMVIDLRHLPSLTSIC---CGVV 264 (325)
Q Consensus 197 l~~l------~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~---~~~~ 264 (325)
+++. ..+ ..+++|++|++++|..-.... ..++..+ ..+++|++|++.+|+--...+ ....
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~--------~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV--------RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH--------HHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH--------HHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 7764 233 348999999999997544200 0112344 568999999999984322221 1112
Q ss_pred cCCCccEEeee
Q 048462 265 PFPSLQTISVN 275 (325)
Q Consensus 265 ~~~~L~~L~l~ 275 (325)
.+++++..++.
T Consensus 328 ~l~~~~~~~l~ 338 (386)
T 2ca6_A 328 VFSTRGRGELD 338 (386)
T ss_dssp HHHHHTCCEEC
T ss_pred HhhhcCcchhh
Confidence 35666655553
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=3.6e-16 Score=134.53 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=154.1
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+++++.++++++ .++.+|..+. +++++|++++|.++.+ +..+.++++|++|++++|.+. .++. .+.+++|+.|
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred cCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCCcCCEE
Confidence 468999999999 8999987665 6899999999999766 456899999999999997654 4554 4789999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccc--cccCCCCCe
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL--DLRMDHLET 157 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--l~~l~~L~~ 157 (325)
++++|.+ ..++..+..+++|+.|++++|....++... .....+|+.|+++++....++. +..+++|+.
T Consensus 83 ~Ls~N~l--------~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 83 DLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp ECCSSCC--------SSCCCCTTTCTTCCEEECCSSCCCCCCSST--TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ECCCCcC--------CcCchhhccCCCCCEEECCCCcCcccCHHH--HcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 9999987 356667888999999999999887654211 1223469999999877666666 778999999
Q ss_pred EEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc-cccCCCCccEEEEeccCC
Q 048462 158 LEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK-WIRYAPNLQFLYVSYCPR 219 (325)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~L~~L~l~~~~~ 219 (325)
|++++|...... .+.+ ..+++|++|+++++ .++.++ .+...++|+.|++.+|+.
T Consensus 153 L~L~~N~l~~l~-----~~~~--~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELP-----AGLL--NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCC-----TTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccC-----HHHh--cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 999999864221 1111 45789999999999 788775 455678999999999874
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.5e-17 Score=141.89 Aligned_cols=200 Identities=14% Similarity=0.194 Sum_probs=135.8
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++|+.|+++++ .++.++ .+..+++|++|++++|.++.++ .+.++++|++|++++|.+....+.. +..+++|++|++
T Consensus 41 ~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEEC
T ss_pred cceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhH-hcCCcCCCEEEC
Confidence 57888888888 677664 4777888888888888877664 5778888888888886655443443 678888888888
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID 161 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~ 161 (325)
++|.+ ....+..+..+++|+.|++++|....++. ..+..+++|+.|+++
T Consensus 117 ~~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 117 VENQL-------QSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------------------GVFDKLTNLTELDLS 165 (272)
T ss_dssp TTSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECC
T ss_pred CCCcC-------CccCHHHhccCCCCCEEECCCCccCccCH------------------------HHhccCccCCEEECC
Confidence 88877 44444456777888888887775443211 113467788888888
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCcccc--ccCCCCccEEEEeccCCchhhcccCCCCCCCcccccc
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQ 239 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (325)
+|...... ...+ ..+++|++|+++++ .++.++. +..+++|++|++.+|+ ..
T Consensus 166 ~n~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-------------------~~ 218 (272)
T 3rfs_A 166 YNQLQSLP-----EGVF--DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP-------------------WD 218 (272)
T ss_dssp SSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-------------------BC
T ss_pred CCCcCccC-----HHHh--cCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC-------------------cc
Confidence 88753111 0111 45678888888888 6776543 5678888888888875 33
Q ss_pred ccCCcccEEeccCCCCcceeccCc
Q 048462 240 DFFSNLMVIDLRHLPSLTSICCGV 263 (325)
Q Consensus 240 ~~~~~L~~L~l~~~~~l~~~~~~~ 263 (325)
+.+++|+.|++..+.....+|...
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred ccCcHHHHHHHHHHhCCCcccCcc
Confidence 456777777777654444455443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=145.67 Aligned_cols=222 Identities=14% Similarity=0.057 Sum_probs=143.0
Q ss_pred CCcEEecCCCCCCCc--Cch--hhhCcccCceecCCCCccc-ccChhh--hccccCceeeccCCCCCeeec----hhhhh
Q 048462 3 ALAVLDLSYNLDLVK--LPE--AIGKLINLCYLNLSNTRIG-QLPTGI--TYLKNLKILRLDGMRYLAFVP----CQVIS 71 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~--lp~--~~~~l~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 71 (325)
.++.+.+.++ .++. +.. .+..+.+|++|++++|.+. ..|..+ .++++|++|++++|.+....+ .. +.
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~-~~ 142 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ-QW 142 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-TT
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-hh
Confidence 3566777776 4442 111 1223566888888888774 555555 778888888888876665333 22 45
Q ss_pred CCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCccccccccc--CccccCCceEEEEceeeeecccc-
Q 048462 72 SLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKS--SPKLQSCIKRLAVVLMASFLLPL- 148 (325)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~- 148 (325)
.+++|++|++++|.+ ....+..+..+++|+.|++++|...+...+.. ......+|++|+++++....++.
T Consensus 143 ~~~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS-------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV 215 (310)
T ss_dssp BCSCCCEEEEECCSS-------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred hccCCCEEEeeCCCc-------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence 688888888888877 45555677788888888888887544222111 11122357888888665544443
Q ss_pred ----cccCCCCCeEEEcCCCCceeccccCCCCCccc-cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhh
Q 048462 149 ----DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEI 223 (325)
Q Consensus 149 ----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~ 223 (325)
+..+++|++|++++|...... +..+.. ..+++|++|+++++ .++.++... +++|++|++++|.. +.+
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~l-~~~ 287 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATV-----NPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNRL-NRA 287 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCC-----CSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCCC-CSC
T ss_pred HHHHHhcCCCCCEEECCCCCCCccc-----hhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCcC-CCC
Confidence 357789999999998864211 011111 22378999999998 787775432 47899999998863 322
Q ss_pred cccCCCCCCCccccccccCCcccEEeccCCC
Q 048462 224 IGTYESPGTSEIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (325)
. ....+++|+.|++++++
T Consensus 288 ~-------------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 P-------------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-------------CTTSCCCCSCEECSSTT
T ss_pred c-------------hhhhCCCccEEECcCCC
Confidence 1 34677899999999874
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=1.1e-18 Score=159.90 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=95.9
Q ss_pred CCCcEEecCCCCCCCcCc--hhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCCCeeechhhhhCCC
Q 048462 2 HALAVLDLSYNLDLVKLP--EAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLS 74 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 74 (325)
++|++|+++++ .++..+ ..+..+++|++|++++|.++ .++..+..+++|++|++++|.+....+......++
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46778888877 566442 33667788888888888764 45666777788888888886654433333133454
Q ss_pred ----cccEEEecccceeeeeeccCc----cchhhhccCCCcceEEEEecCcccc--cccccC-ccccCCceEEEEceeee
Q 048462 75 ----SLQVFSWFSTELVELHYVDST----SVLAELESLENIHDISVTLCNVDAV--NRVKSS-PKLQSCIKRLAVVLMAS 143 (325)
Q Consensus 75 ----~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~-~~~~~~L~~L~l~~~~~ 143 (325)
+|++|++++|.+ .. .++..+..+++|++|++++|..... ..+... ......|++|+++++..
T Consensus 82 ~~~~~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCL-------TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp STTCCCCEEECTTSCC-------BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hCCCceeEEEccCCCC-------CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 688888888876 22 3466677778888888877765431 111110 11122477777775543
Q ss_pred ec-----ccc-cccCCCCCeEEEcCCCC
Q 048462 144 FL-----LPL-DLRMDHLETLEIDRCSL 165 (325)
Q Consensus 144 ~~-----l~~-l~~l~~L~~L~l~~~~~ 165 (325)
.. ++. +..+++|++|++++|..
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 32 122 45567777777777764
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=1.4e-15 Score=144.50 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=57.6
Q ss_pred CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++++|||++| .++.+| ..|.++++|++|++++|.++.++. .+.++++|++|++++|.+ ..+|...+.++++|++|+
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEE
Confidence 4555666665 555553 345555666666666655555543 245555566666655432 333332255555555555
Q ss_pred ecccceeee--------------ee----ccCccchhhhccCCCcceEEEEecCcc
Q 048462 81 WFSTELVEL--------------HY----VDSTSVLAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 81 l~~~~~~~~--------------~~----~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (325)
+++|.+... +. ......+..+..+++|++|++++|...
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 555544100 00 001123445566667777777666543
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.8e-18 Score=158.50 Aligned_cols=177 Identities=14% Similarity=0.062 Sum_probs=84.2
Q ss_pred hhhhccCCCcceEEEEecCccccc--cccc-CccccCCceEEEEceeeeec-----ccc-cccCCCCCeEEEcCCCCcee
Q 048462 98 LAELESLENIHDISVTLCNVDAVN--RVKS-SPKLQSCIKRLAVVLMASFL-----LPL-DLRMDHLETLEIDRCSLESK 168 (325)
Q Consensus 98 ~~~l~~l~~L~~L~l~~~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~-----l~~-l~~l~~L~~L~l~~~~~~~~ 168 (325)
+..+..+++|++|++++|...... .+.. .......|+.|+++++.... ++. +..+++|++|++++|...+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 334455566677766666543211 1110 00011246777777554332 233 55667777777777754321
Q ss_pred ccccCCCCCccc--cccccccEEEecCCCCCCc-----c-ccccCCCCccEEEEeccCCchhhc----------------
Q 048462 169 NDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD-----L-KWIRYAPNLQFLYVSYCPRLSEII---------------- 224 (325)
Q Consensus 169 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l-~~~~~~~~L~~L~l~~~~~l~~~~---------------- 224 (325)
... ...+. ..+++|++|++++| .+++ + ..+..+++|++|++++|..-+...
T Consensus 243 ~~~----~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 243 GMA----ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHH----HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHH----HHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 100 00000 13566777777776 5554 1 123345666666666654211100
Q ss_pred --ccCCCCC---CCccccccccCCcccEEeccCCCCcceeccC-cc-----cCCCccEEeeeCCCCCC
Q 048462 225 --GTYESPG---TSEIEESQDFFSNLMVIDLRHLPSLTSICCG-VV-----PFPSLQTISVNGCPSLR 281 (325)
Q Consensus 225 --~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~-----~~~~L~~L~l~~c~~l~ 281 (325)
...+... ...++..+..+++|+.|++++| .+.+.... .. ..++|++|++++| .++
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 0000000 0012234445677777777776 34332111 11 1568888888887 566
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=2e-17 Score=156.22 Aligned_cols=258 Identities=16% Similarity=0.195 Sum_probs=128.8
Q ss_pred CCCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCC---------------
Q 048462 1 MHALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR--------------- 60 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~--------------- 60 (325)
+++|++|+++++ .++ .++..+..+++|++|++++|.+..+|..+.++++|++|+++...
T Consensus 191 ~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 467777888777 454 33444566777777777777665555555556666655554211
Q ss_pred -----------CCeeechhhhhCCCcccEEEecccceeeeeeccCccch-hhhccCCCcceEEEEecCcccccccccCcc
Q 048462 61 -----------YLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL-AELESLENIHDISVTLCNVDAVNRVKSSPK 128 (325)
Q Consensus 61 -----------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 128 (325)
....+|.. +..+++|++|++++|.+ ..... ..+..+++|+.|++.++ ... ..+.....
T Consensus 270 ~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l-------~~~~~~~~~~~~~~L~~L~L~~~-~~~-~~l~~~~~ 339 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALL-------ETEDHCTLIQKCPNLEVLETRNV-IGD-RGLEVLAQ 339 (592)
T ss_dssp TTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCC-------CHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHH
T ss_pred ccccccCccccchhHHHHH-HhhcCCCcEEecCCCcC-------CHHHHHHHHHhCcCCCEEeccCc-cCH-HHHHHHHH
Confidence 11223333 45566777777777664 22222 23455556666665522 111 11111111
Q ss_pred ccCCceEEEEce----------eeeec---ccc-cccCCCCCeEEEcCCCCceecccc-------------------CC-
Q 048462 129 LQSCIKRLAVVL----------MASFL---LPL-DLRMDHLETLEIDRCSLESKNDYF-------------------GD- 174 (325)
Q Consensus 129 ~~~~L~~L~l~~----------~~~~~---l~~-l~~l~~L~~L~l~~~~~~~~~~~~-------------------~~- 174 (325)
.+++|++|++++ +..+. ++. ...+++|++|++..+...+..... ..
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 223355555552 22221 111 223444444444322221000000 00
Q ss_pred CC-----Cccc--cccccccEEEecCCCC-CCc--cccc-cCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCC
Q 048462 175 QG-----RTRT--YCFRNLRHLSVKTCPC-MTD--LKWI-RYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFS 243 (325)
Q Consensus 175 ~~-----~~~~--~~~~~L~~L~l~~~~~-l~~--l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (325)
.+ .++. ..+++|++|+++.|.+ +++ +..+ ..+++|++|++++|.. ++. .++.....++
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~----------~~~~~~~~~~ 488 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDE----------GLMEFSRGCP 488 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS-SHH----------HHHHHHTCCT
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC-CHH----------HHHHHHhcCc
Confidence 00 0000 3356666666655432 232 1112 2366777777776652 211 1223456789
Q ss_pred cccEEeccCCCCcce--eccCcccCCCccEEeeeCCCCCCC
Q 048462 244 NLMVIDLRHLPSLTS--ICCGVVPFPSLQTISVNGCPSLRK 282 (325)
Q Consensus 244 ~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~ 282 (325)
+|++|++++|+ ++. ++.....+++|+.|++++|. ++.
T Consensus 489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 99999999996 443 23333458999999999995 664
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=7.6e-18 Score=149.69 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=33.8
Q ss_pred EecCCCCCCCcC-chhhhCcccCceecCCCCcccccC-----hhhhccc-cCceeeccCCCCCeeechhhhhCC-----C
Q 048462 7 LDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLP-----TGITYLK-NLKILRLDGMRYLAFVPCQVISSL-----S 74 (325)
Q Consensus 7 L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~ 74 (325)
++++++ .++.. |..+...++|++|++++|.++..+ ..+.+++ +|++|++++|.+....+.. +..+ +
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPA 80 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCT
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCC
Confidence 344444 33322 333333333555555555544333 2344444 4555555554433322222 2222 5
Q ss_pred cccEEEecccce
Q 048462 75 SLQVFSWFSTEL 86 (325)
Q Consensus 75 ~L~~L~l~~~~~ 86 (325)
+|++|++++|.+
T Consensus 81 ~L~~L~Ls~n~l 92 (362)
T 3goz_A 81 NVTSLNLSGNFL 92 (362)
T ss_dssp TCCEEECCSSCG
T ss_pred CccEEECcCCcC
Confidence 555555555544
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.7e-16 Score=128.70 Aligned_cols=148 Identities=17% Similarity=0.262 Sum_probs=80.9
Q ss_pred hCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhc
Q 048462 23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELE 102 (325)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 102 (325)
+.+++|++|+++++.++.+| .+..+++|++|++++| ....++ . +..+++|++|++++|.+ ....+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~-l~~l~~L~~L~l~~n~l-------~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-P-ISGLSNLERLRIMGKDV-------TSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-G-GTTCTTCCEEEEECTTC-------BGGGSCCCT
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-h-hhcCCCCCEEEeECCcc-------CcccChhhc
Confidence 44555555555555555555 4555555555555554 222222 2 55555555555555554 333344455
Q ss_pred cCCCcceEEEEecCccc--ccccccCccccCCceEEEEceee-eecccccccCCCCCeEEEcCCCCceeccccCCCCCcc
Q 048462 103 SLENIHDISVTLCNVDA--VNRVKSSPKLQSCIKRLAVVLMA-SFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTR 179 (325)
Q Consensus 103 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 179 (325)
.+++|+.|++++|.... ...+. ....|+.|+++++. ...++.+..+++|+.|++++|...+ ..+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~---------~~~ 176 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKIN----TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD---------YRG 176 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHT----TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC---------CTT
T ss_pred CCCCCCEEEecCCccCcHhHHHHh----hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC---------hHH
Confidence 55555555555555443 11111 11235555555544 3445556777888888888877532 112
Q ss_pred ccccccccEEEecCC
Q 048462 180 TYCFRNLRHLSVKTC 194 (325)
Q Consensus 180 ~~~~~~L~~L~l~~~ 194 (325)
...+++|++|+++++
T Consensus 177 l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEEECBC
T ss_pred hccCCCCCEEEeeCc
Confidence 256778888888877
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=5.2e-16 Score=146.21 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=101.5
Q ss_pred hhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462 22 IGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 101 (325)
+..+.+|++|++++|.+..++ .+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+ .. +..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l-------~~--l~~l 105 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKI-------KD--LSSL 105 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCC-------CC--CTTS
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCC-------CC--Chhh
Confidence 345556666666666555554 35556666666666644332 332 55566666666666655 11 2245
Q ss_pred ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccc
Q 048462 102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTY 181 (325)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 181 (325)
..+++|+.|++++|....++.+.. ..+|+.|+++++....++.+..+++|+.|++++|... +..+..
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~~l~~----l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~---------~~~~l~ 172 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDINGLVH----LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---------DIVPLA 172 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGGG----CTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC---------CCGGGT
T ss_pred ccCCCCCEEEecCCCCCCCccccC----CCccCEEECCCCccCCchhhcccCCCCEEECcCCcCC---------Cchhhc
Confidence 555666666666655544332221 2235666666554444555667788888888877653 222235
Q ss_pred ccccccEEEecCCCCCCccccccCCCCccEEEEeccCC
Q 048462 182 CFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPR 219 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 219 (325)
.+++|+.|+|++| .+.+++.+..+++|+.|++++|+.
T Consensus 173 ~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 173 GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEE
T ss_pred cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcC
Confidence 6778888888887 777777777788888888887764
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=138.26 Aligned_cols=217 Identities=12% Similarity=0.118 Sum_probs=154.8
Q ss_pred ccCceecCCCCccc--ccCh--hhhccccCceeeccCCCCCeeechhhh--hCCCcccEEEecccceeeeeeccCccc--
Q 048462 26 INLCYLNLSNTRIG--QLPT--GITYLKNLKILRLDGMRYLAFVPCQVI--SSLSSLQVFSWFSTELVELHYVDSTSV-- 97 (325)
Q Consensus 26 ~~L~~L~l~~~~l~--~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-- 97 (325)
..++.+.+.++.+. .+.. ....+++|++|++++|.+.+..|.. + ..+++|++|++++|.+ ....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i-------~~~~~~ 135 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSW-------ATGRSW 135 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCC-------SSTTSS
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccc-------cchhhh
Confidence 35777888877663 2221 1334678999999999888777776 6 8899999999999987 3221
Q ss_pred --hhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec---cc--c-cccCCCCCeEEEcCCCCceec
Q 048462 98 --LAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL---LP--L-DLRMDHLETLEIDRCSLESKN 169 (325)
Q Consensus 98 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---l~--~-l~~l~~L~~L~l~~~~~~~~~ 169 (325)
...+..+++|+.|++++|........ ......+|+.|+++++.... ++ . +..+++|++|++++|......
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCE--QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTT--SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHH--HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 13456789999999999988654321 11223469999999765432 22 2 468899999999999863211
Q ss_pred cccCCCCCcc---ccccccccEEEecCCCCCCcc--ccccCC---CCccEEEEeccCCchhhcccCCCCCCCcccccccc
Q 048462 170 DYFGDQGRTR---TYCFRNLRHLSVKTCPCMTDL--KWIRYA---PNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF 241 (325)
Q Consensus 170 ~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l--~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 241 (325)
..+ ...+++|++|+++++ .++.. +.+..+ ++|++|++++|.. +.+. ..+
T Consensus 214 -------~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp------------~~~-- 270 (310)
T 4glp_A 214 -------GVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGL-EQVP------------KGL-- 270 (310)
T ss_dssp -------HHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCC-CSCC------------SCC--
T ss_pred -------HHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCC-Cchh------------hhh--
Confidence 110 135689999999999 67775 234444 7999999999864 3332 233
Q ss_pred CCcccEEeccCCCCcceeccCcccCCCccEEeeeCC
Q 048462 242 FSNLMVIDLRHLPSLTSICCGVVPFPSLQTISVNGC 277 (325)
Q Consensus 242 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 277 (325)
+++|+.|++++| .++.++. ...+++|+.|+++++
T Consensus 271 ~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 271 PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence 389999999997 6777655 467899999999987
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=3.5e-17 Score=154.66 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=18.3
Q ss_pred CceEEEEceeeeecccc-cccCCCCCeEEEcCCC
Q 048462 132 CIKRLAVVLMASFLLPL-DLRMDHLETLEIDRCS 164 (325)
Q Consensus 132 ~L~~L~l~~~~~~~l~~-l~~l~~L~~L~l~~~~ 164 (325)
+|+.+.+++.....+|. +..+++|++|++++|.
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 45555555444444444 4456666666666665
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.2e-15 Score=126.85 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=110.4
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
..+.++++++ .++.+|..+. .++++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEEC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-hccCCcCCEEEC
Confidence 3567788877 7777776555 578888888887765544 4677888888888886655544444 677888888888
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID 161 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~ 161 (325)
++|.+ ....+..+..+++|+.|++++|....++. ..+..+++|+.|+++
T Consensus 91 ~~n~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 91 ANNQL-------ASLPLGVFDHLTQLDKLYLGGNQLKSLPS------------------------GVFDRLTKLKELRLN 139 (251)
T ss_dssp TTSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECC
T ss_pred CCCcc-------cccChhHhcccCCCCEEEcCCCcCCCcCh------------------------hHhccCCcccEEECc
Confidence 88776 33344456667777777777765443211 013456677777777
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccC
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCP 218 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~ 218 (325)
+|...... .+.+ ..+++|++|+++++ .++.++ .+..+++|++|++.+|+
T Consensus 140 ~N~l~~~~-----~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 140 TNQLQSIP-----AGAF--DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SSCCCCCC-----TTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCccC-----HHHc--CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 77643111 0011 34567777777777 566554 35566777777777765
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1.6e-15 Score=134.04 Aligned_cols=218 Identities=13% Similarity=0.048 Sum_probs=150.7
Q ss_pred CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcc-cccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRI-GQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l-~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+++++|+|++| .++.+|. .|.++++|++|++++|.+ +.+|.. +.++++++++...+++....++..++..+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 57999999999 8999975 589999999999999987 556654 6789998876655545566665444899999999
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecC-cccccccccCccccCCceEEEEceeeeecccc-cccCCCCC
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCN-VDAVNRVKSSPKLQSCIKRLAVVLMASFLLPL-DLRMDHLE 156 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~l~~L~ 156 (325)
|++++|.+ .......+....++..+++.++. ...++.. ........++.|++++.....++. .....+|+
T Consensus 109 L~l~~n~l-------~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 109 LLISNTGI-------KHLPDVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp EEEEEECC-------SSCCCCTTCCBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred cccccccc-------ccCCchhhcccchhhhhhhcccccccccccc-chhhcchhhhhhccccccccCCChhhccccchh
Confidence 99999987 33333334455667777776543 3333221 112233347788888666555655 44556788
Q ss_pred eEEEcCCCCceeccccCCCCCccc---cccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCC
Q 048462 157 TLEIDRCSLESKNDYFGDQGRTRT---YCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTS 233 (325)
Q Consensus 157 ~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 233 (325)
.+.+.++..+ +.++. ..+++|+.|+++++ +++.++. ..+.+|+.|.+.++..++.+.
T Consensus 181 ~l~l~~~n~l---------~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP--------- 240 (350)
T 4ay9_X 181 ELNLSDNNNL---------EELPNDVFHGASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLP--------- 240 (350)
T ss_dssp EEECTTCTTC---------CCCCTTTTTTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCC---------
T ss_pred HHhhccCCcc---------cCCCHHHhccCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCC---------
Confidence 8888765543 12222 45778888888888 7887765 337788888877776655443
Q ss_pred ccccccccCCcccEEeccC
Q 048462 234 EIEESQDFFSNLMVIDLRH 252 (325)
Q Consensus 234 ~~~~~~~~~~~L~~L~l~~ 252 (325)
.+..+++|+.+++.+
T Consensus 241 ----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 ----TLEKLVALMEASLTY 255 (350)
T ss_dssp ----CTTTCCSCCEEECSC
T ss_pred ----CchhCcChhhCcCCC
Confidence 456788888888764
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.1e-15 Score=123.78 Aligned_cols=152 Identities=11% Similarity=0.140 Sum_probs=95.5
Q ss_pred hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccc
Q 048462 45 ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVK 124 (325)
Q Consensus 45 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 124 (325)
...+++|++|++++|.+. .+| . +..+++|++|++++|.+ ..+..+..+++|+.|++++|.....
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~---------~~~~~l~~l~~L~~L~l~~n~l~~~---- 103 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHA---------TNYNPISGLSNLERLRIMGKDVTSD---- 103 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCC---------SCCGGGTTCTTCCEEEEECTTCBGG----
T ss_pred hhhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCC---------CcchhhhcCCCCCEEEeECCccCcc----
Confidence 478999999999996654 667 4 89999999999999976 2335788899999999999876541
Q ss_pred cCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCcccccc
Q 048462 125 SSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIR 204 (325)
Q Consensus 125 ~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 204 (325)
..+.+..+++|++|++++|...+... .. ...+++|++|++++|..+++++.+.
T Consensus 104 --------------------~~~~l~~l~~L~~L~Ls~n~i~~~~~-----~~--l~~l~~L~~L~L~~n~~i~~~~~l~ 156 (197)
T 4ezg_A 104 --------------------KIPNLSGLTSLTLLDISHSAHDDSIL-----TK--INTLPKVNSIDLSYNGAITDIMPLK 156 (197)
T ss_dssp --------------------GSCCCTTCTTCCEEECCSSBCBGGGH-----HH--HTTCSSCCEEECCSCTBCCCCGGGG
T ss_pred --------------------cChhhcCCCCCCEEEecCCccCcHhH-----HH--HhhCCCCCEEEccCCCCccccHhhc
Confidence 11113345556666666655431000 00 0345566666666663355555555
Q ss_pred CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462 205 YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL 253 (325)
Q Consensus 205 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (325)
.+++|++|++++|.. +++ ..+..+++|+.|++.++
T Consensus 157 ~l~~L~~L~l~~n~i-~~~-------------~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 157 TLPELKSLNIQFDGV-HDY-------------RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GCSSCCEEECTTBCC-CCC-------------TTGGGCSSCCEEEECBC
T ss_pred CCCCCCEEECCCCCC-cCh-------------HHhccCCCCCEEEeeCc
Confidence 566666666666542 111 13445566666666654
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=2.1e-16 Score=140.40 Aligned_cols=234 Identities=14% Similarity=0.157 Sum_probs=157.2
Q ss_pred CCCcEEecCCCCCCCcCc-----hhhhCcc-cCceecCCCCccccc-Chhhhcc-----ccCceeeccCCCCCeeechh-
Q 048462 2 HALAVLDLSYNLDLVKLP-----EAIGKLI-NLCYLNLSNTRIGQL-PTGITYL-----KNLKILRLDGMRYLAFVPCQ- 68 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~l~~l-p~~l~~l-----~~L~~L~l~~~~~~~~~~~~- 68 (325)
++|++|++++| .++..+ ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|.+....+..
T Consensus 22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 45999999999 788765 5677888 999999999998644 4455554 99999999998766544432
Q ss_pred --hhhCC-CcccEEEecccceeeeeeccCccchhh----hcc-CCCcceEEEEecCccccc--ccccC-ccccCCceEEE
Q 048462 69 --VISSL-SSLQVFSWFSTELVELHYVDSTSVLAE----LES-LENIHDISVTLCNVDAVN--RVKSS-PKLQSCIKRLA 137 (325)
Q Consensus 69 --~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~ 137 (325)
.+..+ ++|++|++++|.+ ....... +.. .++|++|++++|...... .+... ......|++|+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDF-------SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCG-------GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHhCCCCccEEECcCCcC-------CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 14445 8999999999988 3333333 444 369999999999876321 11111 12223699999
Q ss_pred Eceeeeecccc------cccC-CCCCeEEEcCCCCceeccccCCCCCccc--cc-cccccEEEecCCCCCCccc------
Q 048462 138 VVLMASFLLPL------DLRM-DHLETLEIDRCSLESKNDYFGDQGRTRT--YC-FRNLRHLSVKTCPCMTDLK------ 201 (325)
Q Consensus 138 l~~~~~~~l~~------l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~-~~~L~~L~l~~~~~l~~l~------ 201 (325)
++++....... +..+ ++|++|++++|...+... ..++. .. .++|++|+++++ .+++..
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-----~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~ 247 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-----AELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKL 247 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-----HHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-----HHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHH
Confidence 99765543332 4445 599999999998642111 11221 22 358999999999 777643
Q ss_pred cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462 202 WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 202 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (325)
.+..+++|++|++++|.. ..+... +...+...+..+++|+.|+++++.
T Consensus 248 ~~~~l~~L~~L~L~~n~l-~~i~~~----~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIV-KNMSKE----QCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHHH-TTCCHH----HHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCCc-cccCHH----HHHHHHHHhccCCceEEEecCCCc
Confidence 245678999999999861 111100 001122356678889999999874
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=6.9e-16 Score=145.77 Aligned_cols=84 Identities=17% Similarity=0.301 Sum_probs=50.4
Q ss_pred ccccccEEEecCCCCCCc--cccccC-CCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcce
Q 048462 182 CFRNLRHLSVKTCPCMTD--LKWIRY-APNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTS 258 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~--l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 258 (325)
.+++|++|++++ .+++ +..+.. +++|++|++++|........ .....+++|+.|++++|+. ++
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~ 495 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GD 495 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CH
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cH
Confidence 455666666644 3333 222222 67788888887763222111 1225688999999999864 32
Q ss_pred e--ccCcccCCCccEEeeeCCCC
Q 048462 259 I--CCGVVPFPSLQTISVNGCPS 279 (325)
Q Consensus 259 ~--~~~~~~~~~L~~L~l~~c~~ 279 (325)
. ......+++|+.|++++|+.
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhCCCCCEEeeeCCCC
Confidence 2 22233478999999999954
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=4.8e-15 Score=125.61 Aligned_cols=168 Identities=16% Similarity=0.172 Sum_probs=115.9
Q ss_pred CcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhcc
Q 048462 24 KLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELES 103 (325)
Q Consensus 24 ~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 103 (325)
.+.++..++++.+.++.++ .+..+++|++|++++|.+ ..++ . +..+++|+.|++++|.+ . ..+. +..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~-l~~l~~L~~L~L~~N~i-------~-~~~~-l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLA-G-MQFFTNLKELHLSHNQI-------S-DLSP-LKD 83 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCT-T-GGGCTTCCEEECCSSCC-------C-CCGG-GTT
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccch-H-HhhCCCCCEEECCCCcc-------C-CChh-hcc
Confidence 3556666777777776665 466777777777777543 3455 3 67777777777777766 2 2222 667
Q ss_pred CCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccc
Q 048462 104 LENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCF 183 (325)
Q Consensus 104 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (325)
+++|+.|++++|....++.... ..|+.|+++++....++.+..+++|+.|++++|...+. .....+
T Consensus 84 l~~L~~L~L~~N~l~~l~~~~~-----~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---------~~l~~l 149 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKNLNGIPS-----ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---------VMLGFL 149 (263)
T ss_dssp CSSCCEEECCSSCCSCCTTCCC-----SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---------GGGGGC
T ss_pred CCCCCEEECCCCccCCcCcccc-----CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC---------hHHccC
Confidence 7777777777776665544332 45777777766665666677888889999888876421 112567
Q ss_pred ccccEEEecCCCCCCccccccCCCCccEEEEeccCC
Q 048462 184 RNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPR 219 (325)
Q Consensus 184 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 219 (325)
++|++|+++++ .++++..+..+++|+.|++++|+.
T Consensus 150 ~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 150 SKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred CCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCcc
Confidence 88889999888 788777777888888988888863
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2e-14 Score=120.87 Aligned_cols=153 Identities=17% Similarity=0.219 Sum_probs=112.7
Q ss_pred CCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++++.|++++| .++.++ ..+.++++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEE
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH-hcccCCCCEE
Confidence 46899999999 788774 579999999999999999976655 4789999999999997766444444 8899999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~ 159 (325)
++++|.+ .......+..+++|+.|++++|....++. ..+..+++|+.|+
T Consensus 113 ~L~~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~~~~l~~L~~L~ 161 (251)
T 3m19_A 113 YLGGNQL-------KSLPSGVFDRLTKLKELRLNTNQLQSIPA------------------------GAFDKLTNLQTLS 161 (251)
T ss_dssp ECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEE
T ss_pred EcCCCcC-------CCcChhHhccCCcccEEECcCCcCCccCH------------------------HHcCcCcCCCEEE
Confidence 9999988 44444457889999999999887654322 1134566777777
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCC
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC 194 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (325)
+++|...... ...+ ..+++|++|+++++
T Consensus 162 L~~N~l~~~~-----~~~~--~~l~~L~~L~l~~N 189 (251)
T 3m19_A 162 LSTNQLQSVP-----HGAF--DRLGKLQTITLFGN 189 (251)
T ss_dssp CCSSCCSCCC-----TTTT--TTCTTCCEEECCSC
T ss_pred CCCCcCCccC-----HHHH--hCCCCCCEEEeeCC
Confidence 7777653111 0011 34567777777776
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=1.7e-14 Score=134.57 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=51.7
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+|++|++++| .++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.+.. +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence 4566666666 5555655442 55666666666666555 345666666666654433 443 222 56666666
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
+|.+ .. ++. .+++|+.|++++|.+..
T Consensus 129 ~N~l-------~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 129 NNQL-------TM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp SSCC-------SC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCcC-------CC-CCC---cCccccEEeCCCCccCc
Confidence 6655 11 222 35556666665555443
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=6.2e-16 Score=146.05 Aligned_cols=81 Identities=23% Similarity=0.197 Sum_probs=52.4
Q ss_pred CCCCcEEecCCCCCCCc-----CchhhhCcccCceecCCCCc--c--cccChhhhccccCceeeccCCCCCeeechhhhh
Q 048462 1 MHALAVLDLSYNLDLVK-----LPEAIGKLINLCYLNLSNTR--I--GQLPTGITYLKNLKILRLDGMRYLAFVPCQVIS 71 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~--l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 71 (325)
|++|++|++++| .++. ++.....+++|++|++++|. + ..++..+.++++|++|++++|.....++.. +.
T Consensus 155 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~ 232 (594)
T 2p1m_B 155 CRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQ 232 (594)
T ss_dssp CTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HH
T ss_pred CCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-Hh
Confidence 578999999988 4443 33333467788888888875 3 233333456788888888887544445544 56
Q ss_pred CCCcccEEEecc
Q 048462 72 SLSSLQVFSWFS 83 (325)
Q Consensus 72 ~l~~L~~L~l~~ 83 (325)
.+++|++|++..
T Consensus 233 ~~~~L~~L~l~~ 244 (594)
T 2p1m_B 233 RAPQLEELGTGG 244 (594)
T ss_dssp HCTTCSEEECSB
T ss_pred cCCcceEccccc
Confidence 666666666443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=2.5e-14 Score=123.05 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=139.5
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEe
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSW 81 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 81 (325)
++|++|++++| .++.++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+. .++. +..+++|++|++
T Consensus 46 ~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEEC
T ss_pred CcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEEC
Confidence 57999999999 888886 48899999999999999988877 899999999999997654 4554 899999999999
Q ss_pred cccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEc
Q 048462 82 FSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEID 161 (325)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~ 161 (325)
++|.+ .. ...+..+++|+.|++++|....+..+. ...+|+.|+++++....++.+..+++|+.|+++
T Consensus 120 ~~n~i-------~~--~~~l~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 120 EHNGI-------SD--INGLVHLPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp TTSCC-------CC--CGGGGGCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCcC-------CC--ChhhcCCCCCCEEEccCCcCCcchhhc----cCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence 99988 22 356888999999999999887764333 234589999998877777778899999999999
Q ss_pred CCCCceeccccCCCCCccccccccccEEEecCCCCCCcc
Q 048462 162 RCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL 200 (325)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 200 (325)
+|...+. -....+++|+.|+++++ .+...
T Consensus 187 ~N~i~~l---------~~l~~l~~L~~L~l~~n-~i~~~ 215 (291)
T 1h6t_A 187 KNHISDL---------RALAGLKNLDVLELFSQ-ECLNK 215 (291)
T ss_dssp SSCCCBC---------GGGTTCTTCSEEEEEEE-EEECC
T ss_pred CCcCCCC---------hhhccCCCCCEEECcCC-cccCC
Confidence 9986421 11256899999999998 55543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.8e-14 Score=135.79 Aligned_cols=189 Identities=17% Similarity=0.143 Sum_probs=144.5
Q ss_pred cccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccC
Q 048462 25 LINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESL 104 (325)
Q Consensus 25 l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 104 (325)
+..+..+.+..+.+..+.. +..+++|+.|++++|.+ ..++. +..+++|+.|++++|.+ .. .+. +..+
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~Ls~N~l-------~~-~~~-l~~l 86 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKL-------TD-IKP-LTNL 86 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCC-CCCTT--GGGCTTCCEEECTTSCC-------CC-CGG-GGGC
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCC-CCChH--HccCCCCCEEEeeCCCC-------CC-Chh-hccC
Confidence 4456667777777765543 57899999999999654 45564 89999999999999987 32 232 8899
Q ss_pred CCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccc
Q 048462 105 ENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFR 184 (325)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (325)
++|+.|++++|....++.+.. ..+|+.|+++++....++.+..+++|+.|++++|.... ......++
T Consensus 87 ~~L~~L~Ls~N~l~~l~~l~~----l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~ 153 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDLSSLKD----LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD---------ITVLSRLT 153 (605)
T ss_dssp TTCCEEECCSSCCCCCTTSTT----CTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC---------CGGGGSCT
T ss_pred CCCCEEECcCCCCCCChhhcc----CCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCC---------chhhcccC
Confidence 999999999998877653322 34589999998777777778899999999999987642 11115678
Q ss_pred cccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCC
Q 048462 185 NLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLP 254 (325)
Q Consensus 185 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (325)
+|+.|+|++| .+..++.+..+++|+.|+|++|.. ..+ ..+..+++|+.|++.+|+
T Consensus 154 ~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~i-~~l-------------~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 154 KLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHI-SDL-------------RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBC-------------GGGTTCTTCSEEECCSEE
T ss_pred CCCEEECcCC-cCCCchhhccCCCCCEEECcCCCC-CCC-------------hHHccCCCCCEEEccCCc
Confidence 9999999998 788776688899999999998853 322 256778899999999873
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=5.2e-14 Score=119.20 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=120.9
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+..++++++ .++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+. .++. +..+++|++|++++
T Consensus 21 l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCC
Confidence 445667777 677776 5778888888888888888777 6788888888888886543 4454 77888888888888
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCC
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC 163 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~ 163 (325)
|.+ . ..+ .+.. ++|+.|++++|....++.+.. ..+|+.|+++++....++.+..+++|+.|++++|
T Consensus 95 N~l-------~-~l~-~~~~-~~L~~L~L~~N~l~~~~~l~~----l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 95 NRL-------K-NLN-GIPS-ACLSRLFLDNNELRDTDSLIH----LKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SCC-------S-CCT-TCCC-SSCCEEECCSSCCSBSGGGTT----CTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS
T ss_pred Ccc-------C-CcC-cccc-CcccEEEccCCccCCChhhcC----cccccEEECCCCcCCCChHHccCCCCCEEECCCC
Confidence 877 2 222 2333 788888888887776644332 3457888888777666777888999999999998
Q ss_pred CCceeccccCCCCCccccccccccEEEecCCCCCCcc
Q 048462 164 SLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDL 200 (325)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 200 (325)
...+. -....+++|+.|+++++ .+...
T Consensus 161 ~i~~~---------~~l~~l~~L~~L~l~~N-~~~~~ 187 (263)
T 1xeu_A 161 EITNT---------GGLTRLKKVNWIDLTGQ-KCVNE 187 (263)
T ss_dssp CCCBC---------TTSTTCCCCCEEEEEEE-EEECC
T ss_pred cCcch---------HHhccCCCCCEEeCCCC-cccCC
Confidence 86422 11156789999999988 45543
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.1e-13 Score=112.85 Aligned_cols=103 Identities=19% Similarity=0.349 Sum_probs=66.7
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+.++.+++ .++.+|..+ .++|++|+++++.++.++.. +.++++|++|++++|.+. .++...+..+++|++|++++
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 45666666 666776544 35788888888877666554 567788888888876544 34433266777888888877
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (325)
|.+ .......+..+++|+.|++++|...
T Consensus 86 n~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 86 NQL-------QSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp SCC-------CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcC-------CccCHhHhcCccCCCEEEcCCCcCc
Confidence 776 3333334566667777776666443
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=1.8e-16 Score=148.39 Aligned_cols=204 Identities=15% Similarity=0.091 Sum_probs=130.1
Q ss_pred hCcccCceecCCCCcccccChhhhccccCceeeccCCC-------------CCeeechhhhhCCCcccEEE-ecccceee
Q 048462 23 GKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMR-------------YLAFVPCQVISSLSSLQVFS-WFSTELVE 88 (325)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 88 (325)
..+++|+.|++++|.++.+|..+++|++|+.|+++++. ..+..|.. ++.+++|+.|+ +..+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhccc--
Confidence 45778889999998888889889999999999886643 22233333 55555555555 333221
Q ss_pred eeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCcee
Q 048462 89 LHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESK 168 (325)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 168 (325)
++|+.+.+.++....++. ..|+.|+++++....+|.+..+++|+.|++++|....+
T Consensus 423 ----------------~~L~~l~l~~n~i~~l~~--------~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l 478 (567)
T 1dce_A 423 ----------------DDLRSKFLLENSVLKMEY--------ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL 478 (567)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHH--------TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC
T ss_pred ----------------chhhhhhhhcccccccCc--------cCceEEEecCCCCCCCcCccccccCcEeecCccccccc
Confidence 011111111111111110 12566777766555667777888899999988876421
Q ss_pred ccccCCCCCccccccccccEEEecCCCCCCccccccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEE
Q 048462 169 NDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVI 248 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 248 (325)
+..+ ..+++|+.|+++++ .++.++.+..+++|++|++++|.. +.+. .|..++.+++|+.|
T Consensus 479 ------p~~~--~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N~l-~~~~----------~p~~l~~l~~L~~L 538 (567)
T 1dce_A 479 ------PPAL--AALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNRL-QQSA----------AIQPLVSCPRLVLL 538 (567)
T ss_dssp ------CGGG--GGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSCC-CSSS----------TTGGGGGCTTCCEE
T ss_pred ------chhh--hcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCCCC-CCCC----------CcHHHhcCCCCCEE
Confidence 1111 56788999999988 788888888888999999988853 2221 03477888899999
Q ss_pred eccCCCCcceeccCcc----cCCCccEEee
Q 048462 249 DLRHLPSLTSICCGVV----PFPSLQTISV 274 (325)
Q Consensus 249 ~l~~~~~l~~~~~~~~----~~~~L~~L~l 274 (325)
++++| .+...+.... .+|+|+.|++
T Consensus 539 ~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99887 4555544322 2788888753
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=8.4e-14 Score=113.63 Aligned_cols=109 Identities=23% Similarity=0.376 Sum_probs=88.5
Q ss_pred CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.++. .+..+++|++|++++|.++.++.. +.++++|++|++++|.+.. ++...+..+++|++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEE
Confidence 57999999999 7888864 578999999999999999888765 5889999999999976654 444337899999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
++++|.+ .......+..+++|+.|++++|....
T Consensus 106 ~L~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 106 ALNTNQL-------QSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp ECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EcCCCcC-------cccCHhHhccCCcCCEEECCCCccce
Confidence 9999988 44444456778888888888876543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=4.3e-13 Score=125.16 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=92.7
Q ss_pred cCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCC
Q 048462 27 NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLEN 106 (325)
Q Consensus 27 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 106 (325)
+|++|+++++.++.+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+ .. ++. +.. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l-------~~-ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRL-------ST-LPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCC-------SC-CCC-CCT--T
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCC-------CC-cch-hhc--C
Confidence 6777777777666666654 366777777775443 455 2356677777777665 22 333 332 6
Q ss_pred cceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCccccccccc
Q 048462 107 IHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNL 186 (325)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L 186 (325)
|+.|++++|.+..++. ...+|+.|+++++....+|. .+++|+.|++++|.... +|. -.++|
T Consensus 122 L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~----------lp~-l~~~L 182 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE------LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF----------LPE-LPESL 182 (571)
T ss_dssp CCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC----------CCC-CCTTC
T ss_pred CCEEECCCCcCCCCCC------cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC----------cch-hhCCC
Confidence 6677776666555433 22345666666554444444 44566666666665421 111 11556
Q ss_pred cEEEecCCCCCCccccccCCCCc-------cEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCC
Q 048462 187 RHLSVKTCPCMTDLKWIRYAPNL-------QFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHL 253 (325)
Q Consensus 187 ~~L~l~~~~~l~~l~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (325)
++|+++++ .++.++.+. .+| +.|++++|. ++.+ |..+..+++|+.|++.+|
T Consensus 183 ~~L~Ls~N-~L~~lp~~~--~~L~~~~~~L~~L~Ls~N~-l~~l------------p~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 183 EALDVSTN-LLESLPAVP--VRNHHSEETEIFFRCRENR-ITHI------------PENILSLDPTCTIILEDN 240 (571)
T ss_dssp CEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCC------------CGGGGGSCTTEEEECCSS
T ss_pred CEEECcCC-CCCchhhHH--HhhhcccccceEEecCCCc-ceec------------CHHHhcCCCCCEEEeeCC
Confidence 66666666 555554422 144 666666553 2222 224444666666666665
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=4.1e-13 Score=110.58 Aligned_cols=148 Identities=14% Similarity=0.240 Sum_probs=104.0
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+.++.+++ .++.+|..+. .+|++|++++|.++.++. .+.++++|++|++++|.+....|.. +..+++|++|++++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCC
Confidence 56788888 7888887654 688999999998877765 5788889999999987766655666 88899999999999
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCC
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC 163 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~ 163 (325)
|.+ .......+..+++|+.|++++|.+..+.. ..+..+++|+.|++++|
T Consensus 90 N~l-------~~l~~~~f~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 90 NKI-------TELPKSLFEGLFSLQLLLLNANKINCLRV------------------------DAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp SCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECCSS
T ss_pred CcC-------CccCHhHccCCCCCCEEECCCCCCCEeCH------------------------HHcCCCCCCCEEECCCC
Confidence 887 33333446778888888888886554311 12446677777777777
Q ss_pred CCceeccccCCCCCccccccccccEEEecCC
Q 048462 164 SLESKNDYFGDQGRTRTYCFRNLRHLSVKTC 194 (325)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (325)
...... .+.+ ..+++|++|+++++
T Consensus 139 ~l~~~~-----~~~~--~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 139 KLQTIA-----KGTF--SPLRAIQTMHLAQN 162 (220)
T ss_dssp CCSCCC-----TTTT--TTCTTCCEEECCSS
T ss_pred cCCEEC-----HHHH--hCCCCCCEEEeCCC
Confidence 653211 1111 34667777777776
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=5.7e-13 Score=110.41 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=96.6
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+.++.+++ .++.+|..+. ++|++|++++|.+..+ |..+.++++|++|++++|.+ ..++...+..+++|+.|++++
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 46777777 7777776554 7888888888888655 55577888888888888665 445543367788888888888
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCC
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRC 163 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~ 163 (325)
|.+ .......+..+++|+.|++++|.+..++. .+..+++|+.|++++|
T Consensus 98 N~l-------~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-------------------------~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 98 NQL-------TVLPSAVFDRLVHLKELFMCCNKLTELPR-------------------------GIERLTHLTHLALDQN 145 (229)
T ss_dssp SCC-------CCCCTTTTTTCTTCCEEECCSSCCCSCCT-------------------------TGGGCTTCSEEECCSS
T ss_pred CcC-------CccChhHhCcchhhCeEeccCCcccccCc-------------------------ccccCCCCCEEECCCC
Confidence 877 33334446677888888887776553321 1346667777777776
Q ss_pred CCceeccccCCCCCccccccccccEEEecCC
Q 048462 164 SLESKNDYFGDQGRTRTYCFRNLRHLSVKTC 194 (325)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (325)
...... ...+ ..+++|+.|+++++
T Consensus 146 ~l~~~~-----~~~~--~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 146 QLKSIP-----HGAF--DRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCC-----TTTT--TTCTTCCEEECTTS
T ss_pred cCCccC-----HHHH--hCCCCCCEEEeeCC
Confidence 543111 0111 34667777777766
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=8.5e-14 Score=109.62 Aligned_cols=134 Identities=20% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCCcEEecCCCCCCC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|+.|++++| .++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+...+|.. +..+++|++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEE
Confidence 46777777777 565 6676677777778888777777666 55677777777777776665556654 6667777777
Q ss_pred EecccceeeeeeccCcc-chhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeE
Q 048462 80 SWFSTELVELHYVDSTS-VLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETL 158 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L 158 (325)
++++|.+ ... .+..+..+++|+.|++++|.....+... ...+..+++|+.|
T Consensus 101 ~Ls~N~l-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---------------------~~~~~~l~~L~~L 152 (168)
T 2ell_A 101 NLSGNKL-------KDISTLEPLKKLECLKSLDLFNCEVTNLNDYR---------------------ESVFKLLPQLTYL 152 (168)
T ss_dssp ECBSSSC-------CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH---------------------HHHHTTCSSCCEE
T ss_pred eccCCcc-------CcchhHHHHhcCCCCCEEEeeCCcCcchHHHH---------------------HHHHHhCccCcEe
Confidence 7777776 221 2256667777777777777554432100 0124577888888
Q ss_pred EEcCCCCc
Q 048462 159 EIDRCSLE 166 (325)
Q Consensus 159 ~l~~~~~~ 166 (325)
++++|...
T Consensus 153 ~l~~n~~~ 160 (168)
T 2ell_A 153 DGYDREDQ 160 (168)
T ss_dssp TTEETTSC
T ss_pred cCCCCChh
Confidence 88888764
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=3.4e-13 Score=119.54 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=106.0
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hh-ccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-IT-YLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
++++++++ .++.+|..+. ..+++|++++|.++.++.. +. ++++|++|++++|.+....+.. +..+++|++|+++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA-FVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh-ccCCCCCCEEECC
Confidence 46777777 7777776554 3577888888888766655 33 7888888888886555443344 7778888888888
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR 162 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~ 162 (325)
+|.+ .......+..+++|+.|++++|.+..+.. ..+..+++|+.|++++
T Consensus 97 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------------------------~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 97 SNHL-------HTLDEFLFSDLQALEVLLLYNNHIVVVDR------------------------NAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp SSCC-------CEECTTTTTTCTTCCEEECCSSCCCEECT------------------------TTTTTCTTCCEEECCS
T ss_pred CCcC-------CcCCHHHhCCCcCCCEEECCCCcccEECH------------------------HHhCCcccCCEEECCC
Confidence 8876 33334456777778888777776543311 1144566677777776
Q ss_pred CCCceeccccCCCCCccc-cccccccEEEecCCCCCCccc--cccCCCC--ccEEEEeccC
Q 048462 163 CSLESKNDYFGDQGRTRT-YCFRNLRHLSVKTCPCMTDLK--WIRYAPN--LQFLYVSYCP 218 (325)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~--~~~~~~~--L~~L~l~~~~ 218 (325)
|....... ..+.. ..+++|++|+++++ .++.++ .+..++. ++.|++.+|+
T Consensus 146 N~l~~l~~-----~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 146 NQISRFPV-----ELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCCCSCCG-----GGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcCCeeCH-----HHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 66532111 01100 23567777777776 566554 2334454 3666666665
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=3.5e-13 Score=119.48 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=116.6
Q ss_pred CCCcEEecCCCCCCCcCchh-hh-CcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKLPEA-IG-KLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+.++.|+|++| .++.++.. +. .+++|++|++++|.++.++. .+.++++|++|++++|.+.. ++...+..+++|+.
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCE
Confidence 46899999999 88888644 55 89999999999999987765 58999999999999976554 44433899999999
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCc-cccCCceEEEEceeeeecccc--cccCCC-
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSP-KLQSCIKRLAVVLMASFLLPL--DLRMDH- 154 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~l~~--l~~l~~- 154 (325)
|++++|.+ ....+..+..+++|+.|++++|.+..++...... ....+|+.|++++.....++. +..++.
T Consensus 117 L~L~~N~i-------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 117 LLLYNNHI-------VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp EECCSSCC-------CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred EECCCCcc-------cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 99999998 4555677889999999999999887764432110 122346777777655545543 555555
Q ss_pred -CCeEEEcCCCCc
Q 048462 155 -LETLEIDRCSLE 166 (325)
Q Consensus 155 -L~~L~l~~~~~~ 166 (325)
++.|++.+|+..
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 366777776653
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=107.60 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=104.0
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh--hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT--GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
+.++++++ .++.+|..+. ..+++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|+++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECC
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-hCCCCCCCEEECC
Confidence 57889998 7888887664 457899999999887743 3788999999999997655544445 8899999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR 162 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~ 162 (325)
+|.+ ....+..+..+++|+.|++++|.+..+.. ..+..+++|+.|++++
T Consensus 90 ~N~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 90 SNRL-------ENVQHKMFKGLESLKTLMLRSNRITCVGN------------------------DSFIGLSSVRLLSLYD 138 (220)
T ss_dssp SSCC-------CCCCGGGGTTCSSCCEEECTTSCCCCBCT------------------------TSSTTCTTCSEEECTT
T ss_pred CCcc-------CccCHhHhcCCcCCCEEECCCCcCCeECH------------------------hHcCCCccCCEEECCC
Confidence 9988 45555668888899999888887654321 1134566677777776
Q ss_pred CCCceeccccCCCCCccccccccccEEEecCC
Q 048462 163 CSLESKNDYFGDQGRTRTYCFRNLRHLSVKTC 194 (325)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (325)
|...... +..+ ..+++|++|+++++
T Consensus 139 N~l~~~~-----~~~~--~~l~~L~~L~L~~N 163 (220)
T 2v70_A 139 NQITTVA-----PGAF--DTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCBC-----TTTT--TTCTTCCEEECCSC
T ss_pred CcCCEEC-----HHHh--cCCCCCCEEEecCc
Confidence 6653110 1111 34666777777766
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=1.4e-13 Score=106.04 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=89.5
Q ss_pred CCCcEEecCCCCCCC--cCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLV--KLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|+.|++++| .++ .+|..+..+++|++|++++|.++.+ ..+.++++|++|++++|.+...+|.. +..+++|++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEE
Confidence 56899999999 676 7888888999999999999988777 66888999999999998776667765 7779999999
Q ss_pred EecccceeeeeeccCc-cchhhhccCCCcceEEEEecCcccc
Q 048462 80 SWFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVDAV 120 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~ 120 (325)
++++|.+ .. ..+..+..+++|+.|++++|.....
T Consensus 94 ~ls~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 94 NLSGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp ECTTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred ECCCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 9999987 33 2347788889999999988876554
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=3.6e-12 Score=104.88 Aligned_cols=150 Identities=12% Similarity=0.149 Sum_probs=111.7
Q ss_pred CceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhhccCCCc
Q 048462 28 LCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAELESLENI 107 (325)
Q Consensus 28 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 107 (325)
-+.++.+++.++++|..+. ++|+.|++++|.+....+.. +..+++|+.|++++|.+ ....+..+..+++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~-~~~l~~L~~L~Ls~N~i-------~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQI-------SELAPDAFQGLRSL 82 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTS-STTCTTCCEEECCSSCC-------CEECTTTTTTCSSC
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhH-hhCCCCCCEEECCCCcC-------CCcCHHHhhCCcCC
Confidence 3678888999999988654 78999999997665544444 88999999999999988 55557788889999
Q ss_pred ceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCcccccccccc
Q 048462 108 HDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLR 187 (325)
Q Consensus 108 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 187 (325)
+.|++++|.+..++. ..+..+++|+.|++++|...... +..+ ..+++|+
T Consensus 83 ~~L~Ls~N~l~~l~~------------------------~~f~~l~~L~~L~L~~N~l~~~~-----~~~~--~~l~~L~ 131 (220)
T 2v9t_B 83 NSLVLYGNKITELPK------------------------SLFEGLFSLQLLLLNANKINCLR-----VDAF--QDLHNLN 131 (220)
T ss_dssp CEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECCSSCCCCCC-----TTTT--TTCTTCC
T ss_pred CEEECCCCcCCccCH------------------------hHccCCCCCCEEECCCCCCCEeC-----HHHc--CCCCCCC
Confidence 999998886554321 11457788999999988764211 1111 4578899
Q ss_pred EEEecCCCCCCcccc--ccCCCCccEEEEeccCC
Q 048462 188 HLSVKTCPCMTDLKW--IRYAPNLQFLYVSYCPR 219 (325)
Q Consensus 188 ~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~ 219 (325)
+|+++++ .++.++. +..+++|++|++++|+.
T Consensus 132 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 132 LLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999988 7777653 66788888888888763
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.8e-12 Score=104.41 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=100.4
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh--hhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG--ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
++++++++ .++.+|..+.. +|++|++++|.++.++.. +.++++|++|++++|.+.+..|.. +..+++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECC
Confidence 68999999 88999876654 899999999999888764 789999999999998777666766 8999999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR 162 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~ 162 (325)
+|.+ ....+..+..+++|+.|++++|....+.. ..+..+++|++|++++
T Consensus 87 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 87 ENKI-------KEISNKMFLGLHQLKTLNLYDNQISCVMP------------------------GSFEHLNSLTSLNLAS 135 (192)
T ss_dssp SCCC-------CEECSSSSTTCTTCCEEECCSSCCCEECT------------------------TSSTTCTTCCEEECTT
T ss_pred CCcC-------CccCHHHhcCCCCCCEEECCCCcCCeeCH------------------------HHhhcCCCCCEEEeCC
Confidence 9988 44445557788889999988887554311 1145677888888888
Q ss_pred CCCc
Q 048462 163 CSLE 166 (325)
Q Consensus 163 ~~~~ 166 (325)
|...
T Consensus 136 N~l~ 139 (192)
T 1w8a_A 136 NPFN 139 (192)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 8753
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=2e-12 Score=107.07 Aligned_cols=131 Identities=23% Similarity=0.336 Sum_probs=107.4
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+.. ++...+..+++|++|
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeE
Confidence 57999999999 78877 67799999999999999999888765 5889999999999976654 554437899999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEE
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~ 159 (325)
++++|.+ ..++..+..+++|+.|++++|.+..++. ..+..+++|+.|+
T Consensus 118 ~Ls~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 118 FMCCNKL--------TELPRGIERLTHLTHLALDQNQLKSIPH------------------------GAFDRLSSLTHAY 165 (229)
T ss_dssp ECCSSCC--------CSCCTTGGGCTTCSEEECCSSCCCCCCT------------------------TTTTTCTTCCEEE
T ss_pred eccCCcc--------cccCcccccCCCCCEEECCCCcCCccCH------------------------HHHhCCCCCCEEE
Confidence 9999998 3667788999999999999987654321 1144678888999
Q ss_pred EcCCCCc
Q 048462 160 IDRCSLE 166 (325)
Q Consensus 160 l~~~~~~ 166 (325)
+.+|+..
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 9888764
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=4e-12 Score=102.38 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=100.4
Q ss_pred cEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEeccc
Q 048462 5 AVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFST 84 (325)
Q Consensus 5 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 84 (325)
++++++++ .++.+|..+. ++|++|++++|.++.+|..+.++++|++|++++|.+....+.. +..+++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEEECCCC
Confidence 57899999 8888887654 6899999999999999988999999999999997766544455 899999999999999
Q ss_pred ceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCC
Q 048462 85 ELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCS 164 (325)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~ 164 (325)
.+ ....+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|+
T Consensus 89 ~l-------~~i~~~~f~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RL-------RCIPPRTFDGLKSLRLLSLHGNDISVVPE------------------------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CC-------CBCCTTTTTTCTTCCEEECCSSCCCBCCT------------------------TTTTTCTTCCEEECCSSC
T ss_pred cc-------CEeCHHHhCCCCCCCEEECCCCCCCeeCh------------------------hhhhcCccccEEEeCCCC
Confidence 88 45555678888999999998887654321 114466778888888877
Q ss_pred Cc
Q 048462 165 LE 166 (325)
Q Consensus 165 ~~ 166 (325)
..
T Consensus 138 ~~ 139 (193)
T 2wfh_A 138 LY 139 (193)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.6e-12 Score=101.04 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=92.7
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcc-cCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLI-NLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
+.+|+.|++++| .++.+|. +..+. +|++|++++|.++.+ ..+.++++|++|++++|.+. .+|...+..+++|++|
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence 357888888888 7777754 44444 888888888888777 56788888888888886654 4554425788888888
Q ss_pred EecccceeeeeeccCccchh--hhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCe
Q 048462 80 SWFSTELVELHYVDSTSVLA--ELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLET 157 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~ 157 (325)
++++|.+ ...+. .+..+++|+.|++++|.....+... ...+..+++|+.
T Consensus 94 ~L~~N~i--------~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~---------------------~~~~~~l~~L~~ 144 (176)
T 1a9n_A 94 ILTNNSL--------VELGDLDPLASLKSLTYLCILRNPVTNKKHYR---------------------LYVIYKVPQVRV 144 (176)
T ss_dssp ECCSCCC--------CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHH---------------------HHHHHHCTTCSE
T ss_pred ECCCCcC--------CcchhhHhhhcCCCCCEEEecCCCCCCcHhHH---------------------HHHHHHCCccce
Confidence 8888876 23333 6777888888888887655432110 001457788888
Q ss_pred EEEcCCCCc
Q 048462 158 LEIDRCSLE 166 (325)
Q Consensus 158 L~l~~~~~~ 166 (325)
|+++++...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 888877653
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=4.1e-12 Score=104.51 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=105.4
Q ss_pred CCCcEEecCCCCCCCcCc--hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKLP--EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+.+++|++++| .++.++ ..+..+++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 109 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLKT 109 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG-GTTCSSCCE
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH-hcCCcCCCE
Confidence 46789999999 888773 348899999999999999987766 6899999999999997776555555 899999999
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeee
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMAS 143 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 143 (325)
|++++|.+ ....+..+..+++|+.|++++|....+... ......+|+.|++++...
T Consensus 110 L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 110 LMLRSNRI-------TCVGNDSFIGLSSVRLLSLYDNQITTVAPG--AFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECTTSCC-------CCBCTTSSTTCTTCSEEECTTSCCCCBCTT--TTTTCTTCCEEECCSCCE
T ss_pred EECCCCcC-------CeECHhHcCCCccCCEEECCCCcCCEECHH--HhcCCCCCCEEEecCcCC
Confidence 99999998 555577888999999999999988766321 112234589999986544
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=3.4e-12 Score=100.32 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=104.6
Q ss_pred CcccCceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchhhh
Q 048462 24 KLINLCYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLAEL 101 (325)
Q Consensus 24 ~l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 101 (325)
..++|++|++++|.++ .+|..+.++++|++|++++|.+... .. +..+++|++|++++|.+ ....+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l-------~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN-LPKLPKLKKLELSENRI-------FGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS-CCCCSSCCEEEEESCCC-------CSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh-hccCCCCCEEECcCCcC-------chHHHHHH
Confidence 3478999999999987 8888889999999999999775544 34 88999999999999988 44466666
Q ss_pred ccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCceeccccCCCCCc--c
Q 048462 102 ESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGRT--R 179 (325)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~ 179 (325)
..+++|+.|++++|....++. ++.+..+++|+.|++++|...... ... .
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~l~~l~~L~~L~l~~N~l~~~~------~~~~~~ 142 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDIST-----------------------LEPLKKLECLKSLDLFNCEVTNLN------DYRESV 142 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGG-----------------------GGGGSSCSCCCEEECCSSGGGTST------THHHHH
T ss_pred hhCCCCCEEeccCCccCcchh-----------------------HHHHhcCCCCCEEEeeCCcCcchH------HHHHHH
Confidence 779999999998887654321 123557889999999999864211 100 0
Q ss_pred ccccccccEEEecCCCCCCccc
Q 048462 180 TYCFRNLRHLSVKTCPCMTDLK 201 (325)
Q Consensus 180 ~~~~~~L~~L~l~~~~~l~~l~ 201 (325)
...+++|++|++++| ...+++
T Consensus 143 ~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 143 FKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp HTTCSSCCEETTEET-TSCBCC
T ss_pred HHhCccCcEecCCCC-Chhhcc
Confidence 156899999999999 566554
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=5.3e-12 Score=118.17 Aligned_cols=107 Identities=22% Similarity=0.296 Sum_probs=93.2
Q ss_pred CCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 3 ALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
.|++|++++| .++.+|. ++.+++|++|++++|.++.+|..+.++++|++|++++|.+.+ +| . ++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~-l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-G-VANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-G-GTTCSSCCEEECC
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-c-cCCCCCCcEEECC
Confidence 5889999999 8889987 999999999999999999999999999999999999976554 77 4 9999999999999
Q ss_pred ccceeeeeeccCccc-hhhhccCCCcceEEEEecCccccc
Q 048462 83 STELVELHYVDSTSV-LAELESLENIHDISVTLCNVDAVN 121 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~ 121 (325)
+|.+ .... +..+..+++|+.|++++|.....+
T Consensus 517 ~N~l-------~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 517 NNRL-------QQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SSCC-------CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCC-------CCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 9988 4443 788999999999999998876543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=9e-12 Score=100.29 Aligned_cols=108 Identities=20% Similarity=0.314 Sum_probs=92.8
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++|++|++++| .++.+|..+..+++|++|++++|.++.++. .+.++++|++|++++|.+....+.. +..+++|++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT-FDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEE
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHH-hCCCCCCCEEE
Confidence 57999999999 899999999999999999999999987765 5889999999999997766555555 99999999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (325)
+++|.+ .......+..+++|+.|++.+|.+.
T Consensus 109 L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDI-------SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCC-------CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCC-------CeeChhhhhcCccccEEEeCCCCee
Confidence 999998 4444446788999999999988754
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=7.6e-12 Score=100.65 Aligned_cols=109 Identities=16% Similarity=0.271 Sum_probs=94.3
Q ss_pred CCCcEEecCCCCCCCcCch--hhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKLPE--AIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
+++++|++++| .++.++. .+..+++|++|++++|.++.+ |..+.++++|++|++++|.+....+.. +..+++|++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM-FLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS-STTCTTCCE
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH-hcCCCCCCE
Confidence 47899999999 8888865 389999999999999999766 677999999999999998776666655 889999999
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
|++++|.+ ....+..+..+++|+.|++++|....
T Consensus 107 L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 107 LNLYDNQI-------SCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EECCSSCC-------CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EECCCCcC-------CeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999998 55567788899999999999987653
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.4e-11 Score=118.66 Aligned_cols=108 Identities=26% Similarity=0.329 Sum_probs=94.7
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
++.|+.|+|++| .+..+|..+..+++|++|+|++|.++.+|..+.++++|++|++++|.+. .+|.. +.++++|++|+
T Consensus 223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFY 299 (727)
T ss_dssp CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEE
T ss_pred CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEE
Confidence 467899999999 7888988888999999999999999999998999999999999997766 77887 89999999999
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
+++|.+ ..++..+..+++|+.|++++|.+.+
T Consensus 300 L~~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 300 FFDNMV--------TTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCSSCC--------CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCC--------CccChhhhcCCCccEEeCCCCccCC
Confidence 999987 3667778999999999999998664
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.1e-11 Score=95.29 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=85.0
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccc-cChhhhccccCceeeccCCCCCee-echhhhhCCCcccE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQ-LPTGITYLKNLKILRLDGMRYLAF-VPCQVISSLSSLQV 78 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~ 78 (325)
+++|++|++++| .++.+ ..++.+++|++|++++|.++. +|..+.++++|++|++++|.+... .+.. +..+++|++
T Consensus 41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~-~~~l~~L~~ 117 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKS 117 (149)
T ss_dssp CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGG-GGGCTTCCE
T ss_pred cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHH-HhhCCCCCE
Confidence 578999999999 88887 778999999999999999976 777778899999999999775542 2255 899999999
Q ss_pred EEecccceeeeeeccCccch---hhhccCCCcceEEEE
Q 048462 79 FSWFSTELVELHYVDSTSVL---AELESLENIHDISVT 113 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~ 113 (325)
|++++|.+ ..... ..+..+++|+.|+++
T Consensus 118 L~l~~N~l-------~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 118 LDLFNCEV-------TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTCGG-------GGSTTHHHHHHHHCTTCCEETTB
T ss_pred EeCcCCcc-------cchHHHHHHHHHHCCCcccccCC
Confidence 99999987 32222 467888999888653
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=2.8e-11 Score=105.74 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=71.4
Q ss_pred ccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCccc-EEeccCCCCcce
Q 048462 182 CFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLM-VIDLRHLPSLTS 258 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~ 258 (325)
.+++|+.+++.++ .++.++ .+..+++|+.|++.++ ++.+.. ..+..+++|+ .+.+.+ .++.
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCE
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceE
Confidence 3788999999887 677765 4667888999988876 555554 3667888898 888886 6667
Q ss_pred eccC-cccCCCccEEeeeCCCCCCCCCCCCCCcccceeEEe
Q 048462 259 ICCG-VVPFPSLQTISVNGCPSLRKLPLNSGSAKNSLNAIR 298 (325)
Q Consensus 259 ~~~~-~~~~~~L~~L~l~~c~~l~~ip~~~~~~~~~l~~~~ 298 (325)
+... ...|++|+.+++.+. .++.|+.........++.++
T Consensus 288 I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 6544 335788999998664 78888765544445555554
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=2.5e-10 Score=99.70 Aligned_cols=100 Identities=12% Similarity=-0.020 Sum_probs=72.4
Q ss_pred cCCCCCeEEEcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCcc-EEEEeccCCchhhcccC
Q 048462 151 RMDHLETLEIDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQ-FLYVSYCPRLSEIIGTY 227 (325)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~-~L~l~~~~~l~~~~~~~ 227 (325)
.+++|+.+++++|....+. .+.+ ..+.+|+++++.+. ++.++ .+..+++|+ .+.+.+ .++.+..
T Consensus 224 ~~~~L~~l~L~~n~i~~I~-----~~aF--~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIP-----DFTF--AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-- 290 (329)
T ss_dssp HCTTCCEEECTTBCCCEEC-----TTTT--TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT--
T ss_pred hcCCCeEEECCCCCcceec-----Hhhh--hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch--
Confidence 4889999999988754332 1222 46889999999885 66664 466789999 999987 4566554
Q ss_pred CCCCCCccccccccCCcccEEeccCCCCcceeccCc-ccCCCccEEe
Q 048462 228 ESPGTSEIEESQDFFSNLMVIDLRHLPSLTSICCGV-VPFPSLQTIS 273 (325)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~ 273 (325)
..+..+++|+.+++.++ .+..+.... ..+++|+.+.
T Consensus 291 ---------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 ---------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred ---------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 47778999999999774 677776643 3467777765
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.5e-10 Score=91.71 Aligned_cols=128 Identities=16% Similarity=0.265 Sum_probs=92.8
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
.+.++++++ .++.+|..+. .+|++|++++|.++.++.. +.++++|++|++++|.+. .++...+..+++|+.|+++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 467888888 7888875543 6899999999988777664 578899999999987655 4444326889999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcC
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDR 162 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~ 162 (325)
+|.+ .......+..+++|+.|++++|....++. ..+..+++|+.|++++
T Consensus 85 ~N~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------------------------~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 85 ENKL-------QSLPNGVFDKLTQLKELALDTNQLKSVPD------------------------GIFDRLTSLQKIWLHT 133 (177)
T ss_dssp SSCC-------CCCCTTTTTTCTTCCEEECCSSCCSCCCT------------------------TTTTTCTTCCEEECCS
T ss_pred CCCc-------cccCHHHhhCCcccCEEECcCCcceEeCH------------------------HHhcCCcccCEEEecC
Confidence 9887 44444456778888888888876553321 0134667788888888
Q ss_pred CCCc
Q 048462 163 CSLE 166 (325)
Q Consensus 163 ~~~~ 166 (325)
|...
T Consensus 134 N~~~ 137 (177)
T 2o6r_A 134 NPWD 137 (177)
T ss_dssp SCBC
T ss_pred CCee
Confidence 7753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=9.3e-11 Score=92.89 Aligned_cols=109 Identities=25% Similarity=0.333 Sum_probs=89.8
Q ss_pred CCCcEEecCCCCCCCcCch-hhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKLPE-AIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+....+.. +..+++|++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV-FDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHH-hhCCcccCEE
Confidence 57999999999 7888764 578999999999999999888765 588999999999997665444444 7899999999
Q ss_pred EecccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 80 SWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
++++|.+ .......+..+++|+.|++++|....
T Consensus 106 ~l~~N~l-------~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTNQL-------KSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCC-------SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCcc-------eEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999988 43334446789999999999997653
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=3.2e-11 Score=95.56 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=90.3
Q ss_pred CCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhh-hccccCceeeccCCCCCeeech--hhhhCCCcccE
Q 048462 2 HALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGI-TYLKNLKILRLDGMRYLAFVPC--QVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~ 78 (325)
++|++|++++| .++.+ +.++.+++|++|++++|.++.+|..+ ..+++|++|++++|.+ +.+|. . +..+++|+.
T Consensus 42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~-l~~l~~L~~ 117 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDP-LASLKSLTY 117 (176)
T ss_dssp TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGG-GGGCTTCCE
T ss_pred CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHh-hhcCCCCCE
Confidence 48999999999 88887 67899999999999999999888766 8999999999999765 55665 5 889999999
Q ss_pred EEecccceeeeeeccCccchh----hhccCCCcceEEEEecCccc
Q 048462 79 FSWFSTELVELHYVDSTSVLA----ELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~ 119 (325)
|++++|.+ ...+. .+..+++|+.|++..+....
T Consensus 118 L~l~~N~i--------~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 118 LCILRNPV--------TNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSSGG--------GGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEecCCCC--------CCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999987 23343 37889999999999987543
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=1.4e-10 Score=91.33 Aligned_cols=104 Identities=23% Similarity=0.280 Sum_probs=86.2
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
.+.|+++++ .++.+|..+. .+|++|++++|.++.+ |..+.++++|++|++++|.+. .++...+..+++|++|+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 578999999 8999987664 8999999999999877 556889999999999997655 5555437899999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (325)
+|.+ .......+..+++|+.|++++|.+.
T Consensus 87 ~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQL-------KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCC-------CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcc-------CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9988 4444456888999999999999765
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.2e-12 Score=105.99 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=54.1
Q ss_pred hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccchh
Q 048462 20 EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVLA 99 (325)
Q Consensus 20 ~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 99 (325)
..++.+++|++|++++|.++.+| .+.++++|++|++++|.+. .+|.. +..+++|+.|++++|.+ . .. .
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~N~l-------~-~l-~ 109 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQI-------A-SL-S 109 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSH-HHHHHHCSEEEEEEEEC-------C-CH-H
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccch-hhcCCcCCEEECcCCcC-------C-cC-C
Confidence 34555555555555555544444 4445555555555553322 33433 44444555555555444 1 11 1
Q ss_pred hhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeecccccccCCCCCeEEEcCCCCc
Q 048462 100 ELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFLLPLDLRMDHLETLEIDRCSLE 166 (325)
Q Consensus 100 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 166 (325)
.+..+++|+.|++++|....++. ++.+..+++|++|++++|...
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~-----------------------~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGE-----------------------IDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHH-----------------------HHHHTTTTTCSEEEECSCHHH
T ss_pred ccccCCCCCEEECCCCcCCchhH-----------------------HHHHhcCCCCCEEEecCCccc
Confidence 34444444444444443332211 112557778888888887653
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=2e-10 Score=90.68 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=85.4
Q ss_pred CcEEecCCCCCCCcCchhhhCcccCceecCCCCccccc-ChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEec
Q 048462 4 LAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQL-PTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWF 82 (325)
Q Consensus 4 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (325)
-+.++++++ .++.+|..+. .+|++|++++|.++.+ |..+.++++|++|++++|.+. .+|...+..+++|+.|+++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 368899999 8899987665 8999999999999877 556889999999999997554 4665436889999999999
Q ss_pred ccceeeeeeccCccchhhhccCCCcceEEEEecCccc
Q 048462 83 STELVELHYVDSTSVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
+|.+ .......+..+++|+.|++.+|.+..
T Consensus 90 ~N~l-------~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHL-------KSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCC-------CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCcc-------ceeCHHHhccccCCCEEEeCCCCccc
Confidence 9988 33333458889999999999987653
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=1.2e-10 Score=112.33 Aligned_cols=91 Identities=25% Similarity=0.187 Sum_probs=62.1
Q ss_pred chhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccch
Q 048462 19 PEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL 98 (325)
Q Consensus 19 p~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 98 (325)
|..+..+.+|++|++++|.+..+|..+.++++|++|++++|.+. .+|.. +.++++|+.|++++|.+ . .++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l-------~-~lp 286 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRL-------T-SLP 286 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCC-------S-SCC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcC-------C-ccC
Confidence 55566777777777777777777777777777777777776554 66766 77777777777777776 3 556
Q ss_pred hhhccCCCcceEEEEecCccc
Q 048462 99 AELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 99 ~~l~~l~~L~~L~l~~~~~~~ 119 (325)
..+..+++|+.|++++|.+..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCc
Confidence 667777777777777775543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=2.1e-11 Score=98.48 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=92.0
Q ss_pred CCCCcEEecCCCCCCCcCchhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 1 MHALAVLDLSYNLDLVKLPEAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+++|++|++++| .++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+.. +| . +..+++|++|+
T Consensus 47 l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-G-IEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-H-HHHHHHSSEEE
T ss_pred CCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-c-cccCCCCCEEE
Confidence 578999999999 888888 8999999999999999999999988889999999999976544 66 4 88999999999
Q ss_pred ecccceeeeeeccCc-cchhhhccCCCcceEEEEecCccc
Q 048462 81 WFSTELVELHYVDST-SVLAELESLENIHDISVTLCNVDA 119 (325)
Q Consensus 81 l~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 119 (325)
+++|.+ .. .....+..+++|+.|++.+|....
T Consensus 122 l~~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 122 MSNNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ESEEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCcC-------CchhHHHHHhcCCCCCEEEecCCcccc
Confidence 999987 22 123578899999999999987654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.1e-09 Score=84.82 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=72.6
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.+ |..+..+++|++|++++|+++.+|.. +.++++|++|++++|.+. .+|...+..+++|++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEE
Confidence 57999999999 78887 67799999999999999999989886 478999999999997665 4554438899999999
Q ss_pred Eecccce
Q 048462 80 SWFSTEL 86 (325)
Q Consensus 80 ~l~~~~~ 86 (325)
++.+|.+
T Consensus 111 ~L~~N~~ 117 (174)
T 2r9u_A 111 YLYNNPW 117 (174)
T ss_dssp ECCSSCB
T ss_pred EeCCCCc
Confidence 9999987
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=2.6e-09 Score=83.94 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=72.3
Q ss_pred CCCcEEecCCCCCCCcC-chhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
++|++|++++| .++.+ |..+..+++|++|++++|.++.+|.. +.++++|++|++++|.+.. ++...+..+++|++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEE
Confidence 57999999999 88888 67799999999999999999988876 4899999999999976654 554338899999999
Q ss_pred Eecccce
Q 048462 80 SWFSTEL 86 (325)
Q Consensus 80 ~l~~~~~ 86 (325)
++++|.+
T Consensus 108 ~L~~N~~ 114 (170)
T 3g39_A 108 WLLNNPW 114 (170)
T ss_dssp ECCSSCB
T ss_pred EeCCCCC
Confidence 9999987
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.89 E-value=1.6e-07 Score=84.13 Aligned_cols=256 Identities=9% Similarity=0.074 Sum_probs=148.2
Q ss_pred CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
.++.+.+-+. ++.++ .+|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++..++.+|++|+.++
T Consensus 114 ~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 114 GYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred CccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 4455555543 55553 446665 6888888765 5555443 344 3688888876 34455544488888888888
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEc-eeeeecccccccCCCCCeEE
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVV-LMASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~l~~l~~l~~L~~L~ 159 (325)
+..+.+ .......+. +.+|+.+.+..+ ...+... +..-+.+|+.+.+. +...+.-.++.. .+|+.+.
T Consensus 187 l~~n~l-------~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~--aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 187 LSKTKI-------TKLPASTFV-YAGIEEVLLPVT-LKEIGSQ--AFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTSCC-------SEECTTTTT-TCCCSEEECCTT-CCEECTT--TTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEE
T ss_pred cCCCcc-------eEechhhEe-ecccCEEEeCCc-hheehhh--HhhCCCCCCEEecCCCccCcccccccc-CCccEEE
Confidence 887765 222222233 577888877533 3222221 22233457777776 333333333555 6788888
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCCCCCC-----cc--ccccCCCCccEEEEeccCCchhhcccCCCCCC
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMT-----DL--KWIRYAPNLQFLYVSYCPRLSEIIGTYESPGT 232 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 232 (325)
+..+-. .+. ...+ ..+++|+.+++.++ ... .+ ..+..+++|+.+.+.+. ++.+..
T Consensus 255 lp~~i~-~I~-----~~aF--~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~------- 316 (401)
T 4fdw_A 255 LPNGVT-NIA-----SRAF--YYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ------- 316 (401)
T ss_dssp EETTCC-EEC-----TTTT--TTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT-------
T ss_pred eCCCcc-EEC-----hhHh--hCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh-------
Confidence 854321 111 1112 45788888888775 222 23 24556888888888743 555543
Q ss_pred CccccccccCCcccEEeccCCCCcceeccCcc-cCCCccEEeeeCCCCCCCCCCCCCC-cccceeEEechHHH
Q 048462 233 SEIEESQDFFSNLMVIDLRHLPSLTSICCGVV-PFPSLQTISVNGCPSLRKLPLNSGS-AKNSLNAIRGSREW 303 (325)
Q Consensus 233 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~c~~l~~ip~~~~~-~~~~l~~~~~~~~~ 303 (325)
..+..+.+|+.+.+.. .++.+..... .+ +|+.+.+.++ .+..++..... ....+..++.....
T Consensus 317 ----~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 317 ----GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ----TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ----hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 3666788899998864 4666655433 35 8999999876 55555544322 22344555554443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=4.4e-07 Score=81.20 Aligned_cols=215 Identities=11% Similarity=0.041 Sum_probs=119.2
Q ss_pred CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+|+.+++..+ ++.++ .+|.++ +|+.+.+.. .++.++. .+.+|.+|+.+++.++ ....++..++. +.+|+.+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEE
Confidence 4666666554 55553 345554 577777765 4554443 3567777888887763 44555655344 57777777
Q ss_pred ecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEce-eeeecccccccCCCCCeEE
Q 048462 81 WFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVL-MASFLLPLDLRMDHLETLE 159 (325)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~l~~l~~L~~L~ 159 (325)
+..+ + .......+..+++|+.+.+..+ ...+....... ..|+.+.+.+ ...+.-.++..+++|+.+.
T Consensus 210 lp~~-l-------~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~---~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 210 LPVT-L-------KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE---SGITTVKLPNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCTT-C-------CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---CCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred eCCc-h-------heehhhHhhCCCCCCEEecCCC-ccCcccccccc---CCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence 7654 2 2333445667777777777543 22222211111 2467777752 3333334477777888887
Q ss_pred EcCCCCceeccccCCCCCccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCcccc
Q 048462 160 IDRCSLESKNDYFGDQGRTRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEE 237 (325)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 237 (325)
+.++..........+...+ ..+++|+.+.+.+ .++.+. .+..+++|+.+.+..+ ++.+.. .
T Consensus 278 l~~~~~~~~~~~~I~~~aF--~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~-----------~ 340 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCL--EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINF-----------S 340 (401)
T ss_dssp EESSCCCCCTTCEECTTTT--TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECT-----------T
T ss_pred eCCccccCCcccEECHHHh--hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcH-----------H
Confidence 7765532000000001111 3566777777764 355543 4555677777777544 444433 2
Q ss_pred ccccCCcccEEeccCC
Q 048462 238 SQDFFSNLMVIDLRHL 253 (325)
Q Consensus 238 ~~~~~~~L~~L~l~~~ 253 (325)
.+..+ +|+.+.+.++
T Consensus 341 aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SSSSS-CCCEEEECCS
T ss_pred hCCCC-CCCEEEEcCC
Confidence 45566 7777777765
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=7.6e-09 Score=90.88 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=81.7
Q ss_pred EEecCCCCCCCcCchhhhCcccCceecCCC-CcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 6 VLDLSYNLDLVKLPEAIGKLINLCYLNLSN-TRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 6 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~-~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
.++.+++..++.+|. +..+.+|++|+|++ |.++.+|. .+.++++|++|++++|.+.+..|.. +.++++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH-hcCCcCCCEEeCCC
Confidence 457776646888998 99999999999996 89988874 5889999999999998766655555 89999999999999
Q ss_pred cceeeeeeccCccchhhhccCCCcceEEEEecCcc
Q 048462 84 TELVELHYVDSTSVLAELESLENIHDISVTLCNVD 118 (325)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (325)
|.+ .......+..++ |+.|++.+|.+.
T Consensus 90 N~l-------~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NAL-------ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-------SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred Ccc-------ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 998 332233344444 999999988765
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=8.9e-10 Score=97.76 Aligned_cols=163 Identities=12% Similarity=0.068 Sum_probs=92.5
Q ss_pred CCCcEEecCCCCCCCcC-chhhhC-----cccCceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechh---hh
Q 048462 2 HALAVLDLSYNLDLVKL-PEAIGK-----LINLCYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQ---VI 70 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~~l-p~~~~~-----l~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---~~ 70 (325)
++|+.|++++| .++.. ...+.. .++|++|++++|.++ .+......+++|++|++++|.+...-... .+
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46778888888 56532 222332 257888888888764 22222344667788888886554322211 02
Q ss_pred -hCCCcccEEEecccceeeeeeccCc----cchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEceeeeec
Q 048462 71 -SSLSSLQVFSWFSTELVELHYVDST----SVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVLMASFL 145 (325)
Q Consensus 71 -~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 145 (325)
...++|++|++++|.+ .. .+...+..+++|++|++++|.+...... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l-------~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~---------------------~ 202 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPL-------TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE---------------------L 202 (372)
T ss_dssp HSTTCCCCEEECCSSCC-------HHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH---------------------H
T ss_pred HhcCCccceeeCCCCCC-------ChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH---------------------H
Confidence 2456788888888776 22 2333445677777777777764431100 1
Q ss_pred ccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCc
Q 048462 146 LPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTD 199 (325)
Q Consensus 146 l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~ 199 (325)
+.. +...++|++|++++|...+... ..+.. ...++|++|++++| .+++
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~-----~~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAA-----LALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHH-----HHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHH-----HHHHHHHHhCCCCCEEeccCC-CCCH
Confidence 111 4456678888888877542111 01111 24577888888888 5665
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.71 E-value=8.6e-09 Score=80.50 Aligned_cols=85 Identities=8% Similarity=0.210 Sum_probs=39.7
Q ss_pred cccEEEecCCCCCCc--cccccCCCCccEEEEeccCCchhhcccCCCCCCCcccccccc----CCcccEEeccCCCCcce
Q 048462 185 NLRHLSVKTCPCMTD--LKWIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDF----FSNLMVIDLRHLPSLTS 258 (325)
Q Consensus 185 ~L~~L~l~~~~~l~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~ 258 (325)
+|++|++++| .+++ +..+..+++|++|+|++|..+++... ..+.. +++|++|++++|+.+++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3555555555 2444 23344455555555555555544432 12222 23455555555555443
Q ss_pred ecc-CcccCCCccEEeeeCCCCCC
Q 048462 259 ICC-GVVPFPSLQTISVNGCPSLR 281 (325)
Q Consensus 259 ~~~-~~~~~~~L~~L~l~~c~~l~ 281 (325)
--. ....+++|++|++++|+.++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCC
Confidence 111 01235555555555555555
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=2.6e-08 Score=87.80 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=7.8
Q ss_pred hhCCCcccEEEeccc
Q 048462 70 ISSLSSLQVFSWFST 84 (325)
Q Consensus 70 ~~~l~~L~~L~l~~~ 84 (325)
+..+++|+.|++.++
T Consensus 168 l~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHTCTTCCEEEEECC
T ss_pred HhcCCCCcEEEEeCC
Confidence 444555555555544
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=2.2e-08 Score=78.22 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=36.2
Q ss_pred ccccccEEEecCCCCCCc--cccccC----CCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCC
Q 048462 182 CFRNLRHLSVKTCPCMTD--LKWIRY----APNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPS 255 (325)
Q Consensus 182 ~~~~L~~L~l~~~~~l~~--l~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 255 (325)
.+++|++|+|++|..+++ +..+.. +++|++|+|++|+.+++... ..+..+++|++|++++|+.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-----------~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-----------IALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-----------HHGGGCTTCCEEEEESCTT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-----------HHHhcCCCCCEEECCCCCC
Confidence 456666666666655555 222332 23566666666665555433 2344566666666666665
Q ss_pred cce
Q 048462 256 LTS 258 (325)
Q Consensus 256 l~~ 258 (325)
+++
T Consensus 152 Itd 154 (176)
T 3e4g_A 152 VKE 154 (176)
T ss_dssp CCC
T ss_pred CCc
Confidence 554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=3.8e-09 Score=93.71 Aligned_cols=82 Identities=17% Similarity=0.052 Sum_probs=53.7
Q ss_pred CceEEEEceeeee-----cccc-cccCCCCCeEEEcCCCCceeccccCCCCCccc--cccccccEEEecCCCCCCccc--
Q 048462 132 CIKRLAVVLMASF-----LLPL-DLRMDHLETLEIDRCSLESKNDYFGDQGRTRT--YCFRNLRHLSVKTCPCMTDLK-- 201 (325)
Q Consensus 132 ~L~~L~l~~~~~~-----~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~-- 201 (325)
.|++|+++++... .++. +..+++|++|++++|...+... ..+.. ...++|++|++++| .+++..
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 3566666644321 1222 4678899999999998653221 01111 34578999999999 787632
Q ss_pred ----cccCCCCccEEEEeccCC
Q 048462 202 ----WIRYAPNLQFLYVSYCPR 219 (325)
Q Consensus 202 ----~~~~~~~L~~L~l~~~~~ 219 (325)
.+...++|++|++++|..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHhCCCCCEEeccCCCC
Confidence 244579999999999974
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.3e-07 Score=81.34 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCCcEEecCC-CCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 2 HALAVLDLSY-NLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 2 ~~L~~L~l~~-~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
++|++|+|++ | .++.+| ..+..+.+|++|+|++|.+..++. .+.++++|++|++++|.+. .+|...+..++ |+.
T Consensus 31 ~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 31 ENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQE 107 (347)
T ss_dssp SCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCE
T ss_pred CCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceE
Confidence 5799999997 7 888886 679999999999999999987765 5789999999999997655 56654255555 999
Q ss_pred EEecccce
Q 048462 79 FSWFSTEL 86 (325)
Q Consensus 79 L~l~~~~~ 86 (325)
|++.+|.+
T Consensus 108 l~l~~N~~ 115 (347)
T 2ifg_A 108 LVLSGNPL 115 (347)
T ss_dssp EECCSSCC
T ss_pred EEeeCCCc
Confidence 99999987
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=9.7e-08 Score=84.09 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCCcce-----eccCcccCCCccEEeeeCC
Q 048462 205 YAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPSLTS-----ICCGVVPFPSLQTISVNGC 277 (325)
Q Consensus 205 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c 277 (325)
.+|+|++|++.+|........ .......+++|++|+++.+ .+.+ +......+++|++|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~---------~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVE---------MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHH---------HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHH---------HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 356666666666654322211 0001134566777776654 3333 2222234566777777665
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=6.1e-05 Score=67.10 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=26.9
Q ss_pred CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeec
Q 048462 1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRL 56 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l 56 (325)
|.+|+.+.+..+ ++.+. .+|.+|.+|+.+++..+ ++.++. .+..+.+|+.+.+
T Consensus 70 c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 70 CRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp CTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence 345666666533 45553 44666777777766543 333322 2344555554443
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=4.8e-07 Score=71.91 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=30.1
Q ss_pred hhCcccCceecCCCC-ccc-----ccChhhhccccCceeeccCCCCCe----eechhhhhCCCcccEEEecccce
Q 048462 22 IGKLINLCYLNLSNT-RIG-----QLPTGITYLKNLKILRLDGMRYLA----FVPCQVISSLSSLQVFSWFSTEL 86 (325)
Q Consensus 22 ~~~l~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~ 86 (325)
+...++|++|++++| .++ .+...+...++|++|++++|.+.. .+... +...++|++|++++|.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcCCcC
Confidence 344555555555555 442 233334445555555555544332 11222 33445555555555554
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=4e-06 Score=70.24 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=52.7
Q ss_pred hCcccCceecCCCCcccc---cChhhhccccCceeeccCCCCCeeechhhhhCCC--cccEEEecccceeeeeeccCccc
Q 048462 23 GKLINLCYLNLSNTRIGQ---LPTGITYLKNLKILRLDGMRYLAFVPCQVISSLS--SLQVFSWFSTELVELHYVDSTSV 97 (325)
Q Consensus 23 ~~l~~L~~L~l~~~~l~~---lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~ 97 (325)
.++++|++|++++|.+.. +|..+..+++|+.|++++|.+... . . +..+. +|++|++.+|.+ ...+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~-~-l~~l~~l~L~~L~L~~Npl-------~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-R-E-LDKIKGLKLEELWLDGNSL-------CDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-G-G-GGGGTTSCCSEEECTTSTT-------GGGC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-h-h-hhhcccCCcceEEccCCcC-------cccc
Confidence 357788888888887754 445667888888888888665543 2 1 33333 888888888876 2211
Q ss_pred -------hhhhccCCCcceEE
Q 048462 98 -------LAELESLENIHDIS 111 (325)
Q Consensus 98 -------~~~l~~l~~L~~L~ 111 (325)
...+..+++|+.|+
T Consensus 237 ~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEES
T ss_pred CcchhHHHHHHHHCcccCeEC
Confidence 13456677777764
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.07 E-value=0.00014 Score=64.73 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=124.2
Q ss_pred hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccceeeeeeccCccch
Q 048462 20 EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTELVELHYVDSTSVL 98 (325)
Q Consensus 20 ~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 98 (325)
.++.+|.+|+.+.+..+ +..++. .+.++.+|+.+++..+ ...++...+.++..|+.+.+..+.. ...
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~---------~i~ 223 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY---------YLG 223 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC---------EEC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce---------Eee
Confidence 45888999999999765 333433 3677899999998774 4455544488888898888776543 111
Q ss_pred hhhccCCCcceEEEEecCcccccccccCccccCCceEEEEce-eeeecccccccCCCCCeEEEcCCCCceeccccCCCCC
Q 048462 99 AELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVVL-MASFLLPLDLRMDHLETLEIDRCSLESKNDYFGDQGR 177 (325)
Q Consensus 99 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 177 (325)
........|+.+.+.... ..+.. .+...+..++.+.+.. ........+..+..++.+........ ...
T Consensus 224 ~~~~~~~~l~~i~ip~~~-~~i~~--~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--------~~~ 292 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSF-TELGK--SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--------EKT 292 (394)
T ss_dssp TTTTTTCCCCEEEECTTC-CEECS--STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--------TTT
T ss_pred hhhcccCCCceEEECCCc-eeccc--ccccccccceeEEcCCCcceeeccccccccccceeccCceeec--------ccc
Confidence 222344667777764321 11111 1122234466666653 22223333667777777766543211 111
Q ss_pred ccccccccccEEEecCCCCCCccc--cccCCCCccEEEEeccCCchhhcccCCCCCCCccccccccCCcccEEeccCCCC
Q 048462 178 TRTYCFRNLRHLSVKTCPCMTDLK--WIRYAPNLQFLYVSYCPRLSEIIGTYESPGTSEIEESQDFFSNLMVIDLRHLPS 255 (325)
Q Consensus 178 ~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 255 (325)
+ ..+.+|+.+.+.+. ++.+. .+..+.+|+.+++... ++.+.. ..+..+.+|+.+.+.. .
T Consensus 293 F--~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-----------~aF~~c~~L~~i~lp~--~ 353 (394)
T 4fs7_A 293 F--YGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGK-----------RSFRGCTSLSNINFPL--S 353 (394)
T ss_dssp T--TTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECT-----------TTTTTCTTCCEECCCT--T
T ss_pred c--cccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhH-----------HhccCCCCCCEEEECc--c
Confidence 1 34677888877653 44443 3456778888877543 444433 3556778888887764 3
Q ss_pred cceeccCc-ccCCCccEEeee
Q 048462 256 LTSICCGV-VPFPSLQTISVN 275 (325)
Q Consensus 256 l~~~~~~~-~~~~~L~~L~l~ 275 (325)
++.+.... ..|++|+.+++.
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEE
T ss_pred ccEehHHHhhCCCCCCEEEEC
Confidence 55554432 236777777774
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=0.001 Score=59.08 Aligned_cols=142 Identities=8% Similarity=0.087 Sum_probs=71.1
Q ss_pred CcEEecCCCCCCCcC-chhhhCcccCceecCCCC---cccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcccE
Q 048462 4 LAVLDLSYNLDLVKL-PEAIGKLINLCYLNLSNT---RIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQV 78 (325)
Q Consensus 4 L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~---~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 78 (325)
|+.+.+-.. ++.+ ..+|.+|.+|+.+.+..+ .++.+.. ++..+.+|+.+.+..+ ...++..++..+.+|+.
T Consensus 66 L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred CEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 555555433 4444 345667777877777654 2444433 3556777777766542 33444443677777777
Q ss_pred EEecccceeeeeeccCccchhhhccCCCcceEEEEecCcccccccccCccccCCceEEEEc-eeeeecccccccCCCCCe
Q 048462 79 FSWFSTELVELHYVDSTSVLAELESLENIHDISVTLCNVDAVNRVKSSPKLQSCIKRLAVV-LMASFLLPLDLRMDHLET 157 (325)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~l~~l~~l~~L~~ 157 (325)
+.+..... ......+..+..|+.+.+..+ ...+..... ....|+.+.+. ........++..+.++..
T Consensus 142 i~lp~~~~--------~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF---~~~~l~~i~ip~~~~~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 142 VTIPEGVT--------SVADGMFSYCYSLHTVTLPDS-VTAIEERAF---TGTALTQIHIPAKVTRIGTNAFSECFALST 209 (394)
T ss_dssp EECCTTCC--------EECTTTTTTCTTCCEEECCTT-CCEECTTTT---TTCCCSEEEECTTCCEECTTTTTTCTTCCE
T ss_pred ccccceee--------eecccceecccccccccccce-eeEeccccc---cccceeEEEECCcccccccchhhhccccce
Confidence 77765322 222334455666666665432 111111111 11235666654 222223333445555555
Q ss_pred EEEc
Q 048462 158 LEID 161 (325)
Q Consensus 158 L~l~ 161 (325)
....
T Consensus 210 ~~~~ 213 (394)
T 4gt6_A 210 ITSD 213 (394)
T ss_dssp EEEC
T ss_pred eccc
Confidence 5443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=3.7e-06 Score=66.69 Aligned_cols=114 Identities=8% Similarity=0.010 Sum_probs=50.5
Q ss_pred hhhccccCceeeccCC-CCCe----eechhhhhCCCcccEEEecccceeeeeeccCcc----chhhhccCCCcceEEEEe
Q 048462 44 GITYLKNLKILRLDGM-RYLA----FVPCQVISSLSSLQVFSWFSTELVELHYVDSTS----VLAELESLENIHDISVTL 114 (325)
Q Consensus 44 ~l~~l~~L~~L~l~~~-~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~ 114 (325)
.+...++|++|++++| .+.. .+... +...++|++|++++|.+ ... +...+...+.|++|++++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i-------~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRS-------NDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCC-------CHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCC-------ChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3445555666666654 3322 12222 44455566666666554 111 223334445566666665
Q ss_pred cCcccc--cccccCccccCCceEEEE--ceeeee--c---ccc-cccCCCCCeEEEcCCCC
Q 048462 115 CNVDAV--NRVKSSPKLQSCIKRLAV--VLMASF--L---LPL-DLRMDHLETLEIDRCSL 165 (325)
Q Consensus 115 ~~~~~~--~~~~~~~~~~~~L~~L~l--~~~~~~--~---l~~-l~~l~~L~~L~l~~~~~ 165 (325)
|.+... ..+.........|++|++ +++... . +.. +...+.|++|++++|..
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 554421 112222222234566666 322111 1 111 33445666666665553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=0.00092 Score=59.39 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=54.8
Q ss_pred CCCCcEEecCCC--CCCCcCc-hhhhCcccCceecCCCCcccccCh-hhhccccCceeeccCCCCCeeechhhhhCCCcc
Q 048462 1 MHALAVLDLSYN--LDLVKLP-EAIGKLINLCYLNLSNTRIGQLPT-GITYLKNLKILRLDGMRYLAFVPCQVISSLSSL 76 (325)
Q Consensus 1 ~~~L~~L~l~~~--~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 76 (325)
|.+|+.+.+..+ ..++.+. .+|..|.+|+.+.+..+ ++.+.. .+..+.+|+.+.+... ...++...+..+.+|
T Consensus 86 C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 86 CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSL 162 (394)
T ss_dssp CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred CccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceeccccc
Confidence 578999988765 2355553 56888999998887654 444433 3567888888888652 334444447778888
Q ss_pred cEEEeccc
Q 048462 77 QVFSWFST 84 (325)
Q Consensus 77 ~~L~l~~~ 84 (325)
+.+.+..+
T Consensus 163 ~~i~~~~~ 170 (394)
T 4gt6_A 163 HTVTLPDS 170 (394)
T ss_dssp CEEECCTT
T ss_pred ccccccce
Confidence 88877654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.58 E-value=0.012 Score=51.81 Aligned_cols=75 Identities=9% Similarity=0.125 Sum_probs=42.3
Q ss_pred CCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChh-hhccccCceeeccCCCCCeeechhhhhCCCcccEEE
Q 048462 3 ALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFS 80 (325)
Q Consensus 3 ~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 80 (325)
+|+.+.+... ++.++ .+|.+|.+|+.+.+..+ ++.+... +.++ +|+.+.+..+ ...++..++..+ +|+.+.
T Consensus 47 ~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 47 RISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCSEEE
T ss_pred CCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccC-Cccccc
Confidence 4555655533 56664 45788888998888654 4444333 3444 5666665442 334444424443 677776
Q ss_pred eccc
Q 048462 81 WFST 84 (325)
Q Consensus 81 l~~~ 84 (325)
+..+
T Consensus 120 lp~~ 123 (379)
T 4h09_A 120 FPGA 123 (379)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 6553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=7.3e-05 Score=62.57 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=55.9
Q ss_pred hhCcccCce--ecCCCCcccccCh----hhhccccCceeeccCCCCCe--eechhhhhCCCcccEEEecccceeeeeecc
Q 048462 22 IGKLINLCY--LNLSNTRIGQLPT----GITYLKNLKILRLDGMRYLA--FVPCQVISSLSSLQVFSWFSTELVELHYVD 93 (325)
Q Consensus 22 ~~~l~~L~~--L~l~~~~l~~lp~----~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 93 (325)
+...+.|.. ++++.|....++. ...++++|+.|++++|.+.. .++.. +..+++|+.|++++|.+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N~i------- 208 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNEL------- 208 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTSCC-------
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCCcc-------
Confidence 333444554 5566664433322 22568889999999976655 44454 67889999999999887
Q ss_pred CccchhhhccCC--CcceEEEEecCcc
Q 048462 94 STSVLAELESLE--NIHDISVTLCNVD 118 (325)
Q Consensus 94 ~~~~~~~l~~l~--~L~~L~l~~~~~~ 118 (325)
... ..+..++ +|+.|.+.+|...
T Consensus 209 ~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 209 KSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred CCc--hhhhhcccCCcceEEccCCcCc
Confidence 221 3333333 8889999888765
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.78 E-value=0.0012 Score=52.40 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=16.0
Q ss_pred cccCceecCCCCccc-----ccChhhhccccCceeeccCCC
Q 048462 25 LINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMR 60 (325)
Q Consensus 25 l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~ 60 (325)
-..|+.|+|++|.++ .+-..+..-..|++|++++|.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 344555555555442 222333444445555555443
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.73 E-value=0.15 Score=44.60 Aligned_cols=76 Identities=7% Similarity=0.014 Sum_probs=41.7
Q ss_pred CCCCcEEecCCCCCCCcCc-hhhhCcccCceecCCCCcccccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEE
Q 048462 1 MHALAVLDLSYNLDLVKLP-EAIGKLINLCYLNLSNTRIGQLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVF 79 (325)
Q Consensus 1 ~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 79 (325)
|.+|+.+++..+ ++.+. .+|.+| +|+.+.+..+ ++.+....-...+|+.+.+..+ ...+....+.++ +|+..
T Consensus 68 C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~~F~~~-~l~~~ 140 (379)
T 4h09_A 68 CYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPGA--TTEIGNYIFYNS-SVKRI 140 (379)
T ss_dssp CTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTC-CCCEE
T ss_pred CCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCCc--cccccccccccc-eeeee
Confidence 578888988654 66664 456666 5777666543 4444443333347888887653 223333223333 44444
Q ss_pred Eecc
Q 048462 80 SWFS 83 (325)
Q Consensus 80 ~l~~ 83 (325)
.+..
T Consensus 141 ~~~~ 144 (379)
T 4h09_A 141 VIPK 144 (379)
T ss_dssp EECT
T ss_pred eccc
Confidence 4443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.64 E-value=0.018 Score=42.30 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=15.4
Q ss_pred cCceecCCCCcccccChh-hhccccCceeeccCC
Q 048462 27 NLCYLNLSNTRIGQLPTG-ITYLKNLKILRLDGM 59 (325)
Q Consensus 27 ~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~ 59 (325)
+|++|+|++|.++.+|.. +..+++|++|++.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 345555555555444443 233444444444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.15 E-value=0.064 Score=42.35 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCCcEEecCCCCCCC-----cCchhhhCcccCceecCCCCccc-----ccChhhhccccCceeeccCCCC--Ce-----e
Q 048462 2 HALAVLDLSYNLDLV-----KLPEAIGKLINLCYLNLSNTRIG-----QLPTGITYLKNLKILRLDGMRY--LA-----F 64 (325)
Q Consensus 2 ~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~--~~-----~ 64 (325)
..|+.|+|++| .++ .+.+.+..=+.|++|+|++|.++ .+-..+..-..|++|+++++.. .+ .
T Consensus 70 ~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 70 KHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 46899999999 777 33444555678999999999884 4445566677799999976422 22 1
Q ss_pred echhhhhCCCcccEEEecccce
Q 048462 65 VPCQVISSLSSLQVFSWFSTEL 86 (325)
Q Consensus 65 ~~~~~~~~l~~L~~L~l~~~~~ 86 (325)
+... +..-+.|+.|++..+..
T Consensus 149 ia~a-L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMA-IEENESLLRVGISFASM 169 (197)
T ss_dssp HHHH-HHHCSSCCEEECCCCCH
T ss_pred HHHH-HHhCCCcCeEeccCCCc
Confidence 2222 44556677777766543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.67 E-value=0.085 Score=38.62 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=39.1
Q ss_pred ceecCCCCccc--ccChhhhccccCceeeccCCCCCeeechhhhhCCCcccEEEecccce
Q 048462 29 CYLNLSNTRIG--QLPTGITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFSTEL 86 (325)
Q Consensus 29 ~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 86 (325)
..++-++..++ .+|..+ -++|++|+|++|.+ ..++..++..+++|+.|++.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCe
Confidence 35666677776 777543 23688999998554 456655478888999999988865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.45 E-value=48 Score=22.41 Aligned_cols=37 Identities=5% Similarity=0.044 Sum_probs=17.7
Q ss_pred hhccccCceeeccCCCCCeeechhhhhCCCcccEEEecc
Q 048462 45 ITYLKNLKILRLDGMRYLAFVPCQVISSLSSLQVFSWFS 83 (325)
Q Consensus 45 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (325)
+.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 445555555555442 2222222255555555555544
Done!