BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048464
         (423 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
 pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
 pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
 pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
          Length = 115

 Score = 35.8 bits (81), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 104 TFSLGTDGNLVLAEANGTVVWQSNTSNKGV-VGFKLLPNGNMVLHDSKGNFIWQS 157
           T ++    NLV  + NG  +W SNT  +G      LL +GN+V++D   N +W S
Sbjct: 23  TLTIQNKCNLVKYQ-NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 76


>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity.
 pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity.
 pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity.
 pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity
          Length = 114

 Score = 35.8 bits (81), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 104 TFSLGTDGNLVLAEANGTVVWQSNTSNKGV-VGFKLLPNGNMVLHDSKGNFIWQS 157
           T ++    NLV  + NG  +W SNT  +G      LL +GN+V++D   N +W S
Sbjct: 22  TLTIQNKCNLVKYQ-NGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 75


>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
           Sp.
 pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
           Sp.
 pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
           Sp. In Complex With Met-Mannose
 pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
           Sp. In Complex With Met-Mannose
          Length = 276

 Score = 35.8 bits (81), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 110 DGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQS 157
           DGNLV    NG   W + T  KG V      +GN+V++ +    +W S
Sbjct: 173 DGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS 220



 Score = 33.5 bits (75), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 110 DGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDY 160
           DGNLV+  A   V+W S+T        +L  NG++ + D K   +W  F +
Sbjct: 204 DGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKP--VWARFGF 252


>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
 pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
          Length = 109

 Score = 35.8 bits (81), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 90  VWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNT-SNKGVVGFKLLPNGNMVLHD 148
           VW  N   P ++     L +DGN V+ +A G  +W S++    G     L  +GN+V++ 
Sbjct: 40  VWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98

Query: 149 SKGNFIWQSFDY 160
             G+ IW +  Y
Sbjct: 99  --GSDIWSTNTY 108


>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
          Length = 109

 Score = 34.7 bits (78), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 90  VWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNT-SNKGVVGFKLLPNGNMVLHD 148
           VW +N   P ++     L +DGN V+ +A G  +W S++    G     L  +GN+V++ 
Sbjct: 40  VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIY- 98

Query: 149 SKGNFIWQSFDY 160
             G+ IW +  Y
Sbjct: 99  --GSDIWSTNTY 108



 Score = 33.5 bits (75), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 110 DGNLVLAEANGTVVWQSNTSNKGVVGFK--LLPNGNMVLHDSKGNFIWQS 157
           D NLVL + + T VW SNT   G  G K  L  +GN V++D++G  +W S
Sbjct: 28  DCNLVLYD-HSTAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWAS 76


>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
          Length = 109

 Score = 34.3 bits (77), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 90  VWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNT-SNKGVVGFKLLPNGNMVLHD 148
           VW +N   P ++     L +DGN V+ +A G  +W S++    G     L  +GN+V++ 
Sbjct: 40  VWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVVIYR 99

Query: 149 SKGNFIWQSFDY 160
           S    IW +  Y
Sbjct: 100 SD---IWSTNTY 108



 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 110 DGNLVLAEANGTVVWQSNTSNKGVVGFK--LLPNGNMVLHDSKGNFIWQS 157
           D NLVL + + T VW SNT   G  G K  L  +GN V++D++G  +W S
Sbjct: 28  DCNLVLYD-HSTAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWAS 76


>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
 pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
          Length = 109

 Score = 33.1 bits (74), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 90  VWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNT-SNKGVVGFKLLPNGNMVLHD 148
           VW +N G   ++     L +DGN V+ +A G  +W S++    G     L  +GN+V++ 
Sbjct: 40  VWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98

Query: 149 SKGNFIWQSFDYP 161
             G+ IW +  Y 
Sbjct: 99  --GSDIWSTGTYK 109


>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
          Length = 106

 Score = 33.1 bits (74), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 90  VWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNT-SNKGVVGFKLLPNGNMVLHD 148
           VW +N G   ++     L  DGN V+ +A G  +W S++    G     L  +GN+V++ 
Sbjct: 40  VWASNTGILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY- 98

Query: 149 SKGNFIWQS 157
             G+ IW +
Sbjct: 99  --GSDIWST 105


>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
          Length = 112

 Score = 31.6 bits (70), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 88  RWVWEA-NRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNK-GVVGFKLLPNGNMV 145
           R VW +   GK    N    +  DGNLV+   +   +W SNT+ + G     L  + N+V
Sbjct: 38  RAVWASGTNGKA--SNCILKMQRDGNLVIYSGS-RAMWASNTNRQDGNYYLILQRDRNVV 94

Query: 146 LHDSKGNFIWQS 157
           ++D+  N IW S
Sbjct: 95  IYDNSNNAIWAS 106


>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
           Sativum) Bulbs Complexed With Alpha-D-Mannose
          Length = 106

 Score = 31.6 bits (70), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 90  VWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNT-SNKGVVGFKLLPNGNMVLHD 148
           VW +N G   ++     L +DGN V+ +A G  +W S++    G     L  +GN+V++ 
Sbjct: 40  VWASNTGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYR 99

Query: 149 SKGNFIWQS 157
           S    IW +
Sbjct: 100 SD---IWST 105


>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
           From Polygonatum Cyrtonema Hua
 pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
           From Polygonatum Cyrtonema Hua
 pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
           From Polygonatum Cyrtonema Hua
 pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
           From Polygonatum Cyrtonema Hua
 pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
           Complexed With Monomannoside
 pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
           Complexed With Dimannoside
          Length = 110

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 110 DGNLVLAEANGTVVWQSNTSNKGV-VGFKLLPNGNMVLHDSKGNFIWQS 157
           D N VL ++ G  VW SNT   G      L  NGN+V++D     IWQ+
Sbjct: 29  DCNFVLYDS-GKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQT 76



 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 15/62 (24%)

Query: 85  PLYRWVWEAN-------RGKPVRENATFSLGT--------DGNLVLAEANGTVVWQSNTS 129
           P YR + + +        GKPV  + T  LG+        +GNLV+ + +  V+WQ+ T+
Sbjct: 20  PSYRLIMQGDCNFVLYDSGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQTKTN 79

Query: 130 NK 131
            K
Sbjct: 80  GK 81


>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
           Protein Scilla Campanulata Agglutinin (Scafet): A Novel
           Two-Domain Lectin
 pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
           Protein Scilla Campanulata Agglutinin (Scafet): A Novel
           Two-Domain Lectin
 pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
           Protein Scilla Campanulata Agglutinin (Scafet): A Novel
           Two-Domain Lectin
 pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
           Protein Scilla Campanulata Agglutinin (Scafet): A Novel
           Two-Domain Lectin
 pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
           Protein Scilla Campanulata Agglutinin (Scafet): A Novel
           Two-Domain Lectin
 pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
           Protein Scilla Campanulata Agglutinin (Scafet): A Novel
           Two-Domain Lectin
          Length = 236

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 25/81 (30%)

Query: 120 GTVVWQSNTSNKGVVGFKLLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKL 179
           G  +W S TSNKG V   +  NGN +L+ ++GN      D    TL   QSL++      
Sbjct: 104 GPGLWDSGTSNKGSV--VVANNGNSILYSTQGN------DNHPQTLHATQSLQL------ 149

Query: 180 VSRLSIKENVDGPYSFVMESD 200
                       PY   ME+D
Sbjct: 150 -----------SPYRLSMETD 159


>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
 pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
          Length = 337

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 138 LLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTKLVSRLSIKENVD 190
           L P    +   + G  ++Q  DY  DTL   Q+L   GVTK+  R    +N+D
Sbjct: 36  LTPETAKLAKGADGVVVYQQLDYTADTL---QALADAGVTKMSLRNVGVDNID 85


>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
 pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
 pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
 pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
          Length = 112

 Score = 29.6 bits (65), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 88  RWVWEA-NRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNK-GVVGFKLLPNGNMV 145
           R VW +   GK         +  DGNLV+   +   +W SNT+ + G     L  + N+V
Sbjct: 38  RAVWASGTNGKA--SGCVLKMQNDGNLVIYSGS-RAIWASNTNRQNGNYYLILQRDRNVV 94

Query: 146 LHDSKGNFIWQS 157
           ++D+  N IW +
Sbjct: 95  IYDNSNNAIWAT 106


>pdb|3R0E|A Chain A, Structure Of Remusatia Vivipara Lectin
 pdb|3R0E|C Chain C, Structure Of Remusatia Vivipara Lectin
          Length = 109

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 110 DGNLVLAEANGTVVWQSNTSNKGV-VGFKLLPNGNMVLHDSKGNFIWQS 157
           D NLVL   N    WQSNT+N G      L   G +V+ +  G+ +W+S
Sbjct: 30  DCNLVLYNGN----WQSNTANNGRDCKLTLTDYGELVIKNGDGSTVWKS 74


>pdb|2D04|A Chain A, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity.
 pdb|2D04|C Chain C, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity.
 pdb|2D04|E Chain E, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity.
 pdb|2D04|G Chain G, Crystal Structure Of Neoculin, A Sweet Protein With
           Taste-Modifying Activity
          Length = 113

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 17/92 (18%)

Query: 65  YNTTPNAYTLALRWGIQRNEPLYRW-----VWEAN---RGKPVRENATFSLGTDGNLVLA 116
           ++ T  +YTL     IQ N  L ++     +W ++   +G   R     +L +DGNL++ 
Sbjct: 14  HSLTSGSYTLT----IQNNCNLVKYQHGRQIWASDTDGQGSQCR----LTLRSDGNLIIY 65

Query: 117 EANGTVVWQSNT-SNKGVVGFKLLPNGNMVLH 147
           + N  VVW S+   N G     L  +G  V++
Sbjct: 66  DDNNMVVWGSDCWGNNGTYALVLQQDGLFVIY 97


>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
           Sativum At 2.17 A Resolution
 pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
           Sativum At 2.17 A Resolution
          Length = 105

 Score = 28.9 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 91  WEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQS-NTSNKGVVGFKLLPNGNMVLHDS 149
           W +N     +   +  L +DGN V+ +++G  +W S +T   G     L  +GN++++  
Sbjct: 41  WASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWASHSTRGSGNYILILQDDGNVIIY-- 98

Query: 150 KGNFIWQS 157
            G+ IW +
Sbjct: 99  -GSDIWST 105


>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
           (Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
           Mannoside
 pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
           (Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
           Mannoside
 pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
           (Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
           Mannoside
 pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
           (Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
           Mannoside
 pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
           (Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
           1, 3-Methyl-D-Mannose
 pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
           (Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
           1, 3-Methyl-D-Mannose
 pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
           (Galanthus Nivalis) Bulbs In Complex With
           Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
           Alpha1,6-(Mannose-Alpha1,3)-Mannose
          Length = 109

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 90  VWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTSNK 131
           +W  N G   R     S+ TDGNLV+   +   +W SNT  +
Sbjct: 40  IWATNTGGLSRS-CFLSMQTDGNLVVYNPSNKPIWASNTGGQ 80


>pdb|1B77|A Chain A, Building A Replisome Structure From Interacting Pieces: A
           Sliding Clamp Complexed With An Interaction Peptide From
           Dna Polymerase
 pdb|1B77|B Chain B, Building A Replisome Structure From Interacting Pieces: A
           Sliding Clamp Complexed With An Interaction Peptide From
           Dna Polymerase
 pdb|1B77|C Chain C, Building A Replisome Structure From Interacting Pieces: A
           Sliding Clamp Complexed With An Interaction Peptide From
           Dna Polymerase
 pdb|1B8H|A Chain A, Sliding Clamp, Dna Polymerase
 pdb|1B8H|B Chain B, Sliding Clamp, Dna Polymerase
 pdb|1B8H|C Chain C, Sliding Clamp, Dna Polymerase
          Length = 228

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 99  VRENATFSLGTDGNLVLAEANGTVVW 124
           V ++A  S+ TDGN+ +A+   TV W
Sbjct: 67  VSDDAEISMHTDGNIKIADTRSTVYW 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,662,206
Number of Sequences: 62578
Number of extensions: 618313
Number of successful extensions: 1344
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 37
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)