Query 048464
Match_columns 423
No_of_seqs 237 out of 1553
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 2.1E-30 4.5E-35 220.0 5.5 103 87-189 2-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 1.1E-25 2.4E-30 191.6 14.0 108 50-161 7-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.1E-24 2.4E-29 184.9 13.5 107 50-160 7-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.6 8.3E-16 1.8E-20 129.6 9.3 94 224-325 3-107 (110)
5 PF08276 PAN_2: PAN-like domai 99.6 3.9E-15 8.6E-20 113.9 5.8 60 343-402 4-66 (66)
6 cd01098 PAN_AP_plant Plant PAN 99.6 9.2E-15 2E-19 116.4 8.2 80 336-417 2-84 (84)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.3 2.1E-12 4.5E-17 102.4 6.4 67 344-416 9-80 (80)
8 smart00473 PAN_AP divergent su 98.6 1.7E-07 3.7E-12 72.8 7.5 71 344-415 4-77 (78)
9 smart00108 B_lectin Bulb-type 98.6 2.8E-07 6.2E-12 78.0 8.8 54 104-157 23-79 (114)
10 cd00028 B_lectin Bulb-type man 98.3 6.5E-07 1.4E-11 76.0 5.2 53 105-157 24-80 (116)
11 PF01453 B_lectin: D-mannose b 98.2 2.4E-05 5.3E-10 66.3 12.6 100 51-162 12-114 (114)
12 cd01100 APPLE_Factor_XI_like S 98.0 7.9E-06 1.7E-10 63.5 4.5 54 346-400 6-59 (73)
13 smart00223 APPLE APPLE domain. 95.5 0.02 4.3E-07 45.3 4.1 49 349-398 6-57 (79)
14 PF14295 PAN_4: PAN domain; PD 95.3 0.016 3.4E-07 41.0 2.8 32 365-396 15-51 (51)
15 PF00024 PAN_1: PAN domain Thi 95.0 0.025 5.5E-07 43.5 3.5 51 346-397 4-55 (79)
16 smart00605 CW CW domain. 89.3 1.2 2.7E-05 35.9 6.3 53 365-418 21-76 (94)
17 PF08277 PAN_3: PAN-like domai 88.2 1.3 2.8E-05 33.5 5.4 50 365-416 19-71 (71)
18 cd01099 PAN_AP_HGF Subfamily o 87.2 0.89 1.9E-05 35.7 4.0 33 365-397 24-58 (80)
19 PRK11138 outer membrane biogen 79.1 21 0.00046 36.3 11.3 56 102-157 120-186 (394)
20 PF13360 PQQ_2: PQQ-like domai 71.0 16 0.00035 33.6 7.4 71 87-157 13-102 (238)
21 TIGR03300 assembly_YfgL outer 64.4 26 0.00056 35.3 7.8 49 108-156 72-130 (377)
22 PF13360 PQQ_2: PQQ-like domai 64.0 45 0.00098 30.6 8.9 71 87-157 56-148 (238)
23 KOG4649 PQQ (pyrrolo-quinoline 60.8 40 0.00087 32.9 7.7 44 87-130 169-218 (354)
24 PRK11138 outer membrane biogen 60.2 25 0.00055 35.8 6.9 19 139-157 342-361 (394)
25 cd00053 EGF Epidermal growth f 54.5 14 0.00029 22.9 2.5 30 298-327 2-32 (36)
26 PF01436 NHL: NHL repeat; Int 54.0 23 0.0005 21.8 3.4 22 103-124 5-26 (28)
27 cd05845 Ig2_L1-CAM_like Second 53.9 19 0.00042 29.3 3.9 31 87-117 34-64 (95)
28 cd00216 PQQ_DH Dehydrogenases 47.3 60 0.0013 34.3 7.4 71 87-157 39-136 (488)
29 PF07354 Sp38: Zona-pellucida- 44.3 26 0.00056 34.0 3.6 32 87-118 13-44 (271)
30 PF14269 Arylsulfotran_2: Aryl 43.9 3.2E+02 0.007 27.0 11.5 10 87-96 175-184 (299)
31 TIGR03300 assembly_YfgL outer 43.6 1.1E+02 0.0024 30.6 8.4 71 87-157 85-171 (377)
32 PF12458 DUF3686: ATPase invol 38.5 80 0.0017 32.8 6.3 58 50-119 310-368 (448)
33 PF01683 EB: EB module; Inter 38.5 30 0.00065 24.4 2.4 30 294-326 18-47 (52)
34 cd05852 Ig5_Contactin-1 Fifth 36.2 1.2E+02 0.0026 22.8 5.7 32 86-118 15-46 (73)
35 PF14269 Arylsulfotran_2: Aryl 35.3 2.7E+02 0.0058 27.5 9.4 45 105-149 149-219 (299)
36 TIGR03066 Gem_osc_para_1 Gemma 34.2 2.3E+02 0.005 23.9 7.4 53 101-153 34-104 (111)
37 PF05935 Arylsulfotrans: Aryls 33.7 40 0.00086 35.7 3.4 53 110-163 127-187 (477)
38 PF13570 PQQ_3: PQQ-like domai 33.6 48 0.001 21.8 2.7 9 90-98 4-12 (40)
39 COG1520 FOG: WD40-like repeat 33.4 1.7E+02 0.0037 29.4 7.9 72 86-158 130-226 (370)
40 PF07645 EGF_CA: Calcium-bindi 31.3 13 0.00028 25.2 -0.5 30 296-325 3-34 (42)
41 smart00179 EGF_CA Calcium-bind 30.9 57 0.0012 20.7 2.7 30 296-325 3-33 (39)
42 PF06006 DUF905: Bacterial pro 30.1 50 0.0011 25.3 2.5 18 144-161 35-52 (70)
43 PF05935 Arylsulfotrans: Aryls 30.1 1.3E+02 0.0029 31.7 6.7 58 88-147 138-206 (477)
44 smart00564 PQQ beta-propeller 28.0 1.1E+02 0.0023 18.8 3.5 19 108-126 13-32 (33)
45 KOG2106 Uncharacterized conser 26.6 2E+02 0.0044 30.7 6.9 67 104-170 251-329 (626)
46 TIGR00849 gutA PTS system, glu 25.4 90 0.002 26.7 3.6 56 122-177 3-64 (121)
47 TIGR03075 PQQ_enz_alc_DH PQQ-d 24.8 2.8E+02 0.0061 29.7 8.1 70 88-157 48-146 (527)
48 PLN00033 photosystem II stabil 24.5 2.1E+02 0.0046 29.5 6.8 45 111-155 259-305 (398)
49 cd00054 EGF_CA Calcium-binding 24.3 65 0.0014 20.0 2.0 30 296-325 3-33 (38)
50 PF07974 EGF_2: EGF-like domai 22.2 70 0.0015 20.6 1.8 23 302-325 6-28 (32)
51 PF12894 Apc4_WD40: Anaphase-p 21.9 1.7E+02 0.0037 20.5 3.9 18 108-125 30-47 (47)
52 KOG0291 WD40-repeat-containing 21.8 2.5E+02 0.0054 31.5 6.7 50 103-152 354-415 (893)
53 PF01011 PQQ: PQQ enzyme repea 21.3 1E+02 0.0022 20.1 2.5 22 108-129 7-29 (38)
54 PHA02887 EGF-like protein; Pro 20.9 86 0.0019 26.7 2.5 29 296-325 84-117 (126)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=2.1e-30 Score=220.05 Aligned_cols=103 Identities=51% Similarity=0.785 Sum_probs=75.9
Q ss_pred eeEEEEecCCCCCCC---CcEEEEecCCcEEEEecCCcEEEec-CCCCCc--eeEEEEeeCCCeeeecCCCeeEeeeccC
Q 048464 87 YRWVWEANRGKPVRE---NATFSLGTDGNLVLAEANGTVVWQS-NTSNKG--VVGFKLLPNGNMVLHDSKGNFIWQSFDY 160 (423)
Q Consensus 87 ~tvVW~ANr~~Pv~~---~~~l~l~~~G~Lvl~~~~~~~vWst-~~~~~~--~~~~~L~d~GNlVl~~~~~~~lWqSFD~ 160 (423)
+||||+|||++|+.. ..+|.|+.||+|+|++..++++|++ ++.+.+ +..|+|+|+|||||+|..+.+|||||||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~ 81 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY 81 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence 589999999999943 4799999999999999998999999 666554 7889999999999999999999999999
Q ss_pred CCCcccCCcceeecCe----eEEEEeCCCCCCC
Q 048464 161 PTDTLLVGQSLRVGGV----TKLVSRLSIKENV 189 (423)
Q Consensus 161 PTDTLLPGq~L~~~g~----~~L~S~~S~~dps 189 (423)
||||+||||+|+.+.. ..|+||++.+|||
T Consensus 82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999976311 2489999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=1.1e-25 Score=191.64 Aligned_cols=108 Identities=42% Similarity=0.693 Sum_probs=96.5
Q ss_pred ccEEEecCCcEEEEEEeCCCCC-eeEEEEEEEecCCCCeeEEEEecCCCCCCCCcEEEEecCCcEEEEecCCcEEEecCC
Q 048464 50 YRMIRIFNSPFQLGFYNTTPNA-YTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNT 128 (423)
Q Consensus 50 ~~~l~s~~g~F~lGF~~~~~~~-~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~~~~l~l~~~G~Lvl~~~~~~~vWst~~ 128 (423)
++.|+|.++.|++|||.+.... ++.+|||.+.. .++||+|||+.|....++|.|+.||+|+|+|.+|.++|++++
T Consensus 7 ~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~~ 82 (116)
T cd00028 7 GQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS----RTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNT 82 (116)
T ss_pred CCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC----CeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEecc
Confidence 6789999999999999986665 89999997642 478999999999666789999999999999999999999998
Q ss_pred CC-CceeEEEEeeCCCeeeecCCCeeEeeeccCC
Q 048464 129 SN-KGVVGFKLLPNGNMVLHDSKGNFIWQSFDYP 161 (423)
Q Consensus 129 ~~-~~~~~~~L~d~GNlVl~~~~~~~lWqSFD~P 161 (423)
.+ .++..|+|+|+|||||++.++.+||||||||
T Consensus 83 ~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P 116 (116)
T cd00028 83 TRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116 (116)
T ss_pred cCCCCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence 76 5567899999999999999999999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.92 E-value=1.1e-24 Score=184.89 Aligned_cols=107 Identities=42% Similarity=0.700 Sum_probs=95.8
Q ss_pred ccEEEecCCcEEEEEEeCCCCCeeEEEEEEEecCCCCeeEEEEecCCCCCCCCcEEEEecCCcEEEEecCCcEEEecCCC
Q 048464 50 YRMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTS 129 (423)
Q Consensus 50 ~~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~~~~l~l~~~G~Lvl~~~~~~~vWst~~~ 129 (423)
++.|+|.++.|++|||.+....+..+|||.... .++||+|||+.|+..++.|.|++||+|+|+|.+|.++|++++.
T Consensus 7 ~~~l~s~~~~f~~G~~~~~~q~dgnlV~~~~~~----~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~t~ 82 (114)
T smart00108 7 GQTLVSGNSLFELGFFTLIMQNDYNLILYKSSS----RTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTT 82 (114)
T ss_pred CCEEecCCCcEeeeccccCCCCCEEEEEEECCC----CcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEeccc
Confidence 678999999999999998766788999997642 4689999999998877899999999999999999999999986
Q ss_pred -CCceeEEEEeeCCCeeeecCCCeeEeeeccC
Q 048464 130 -NKGVVGFKLLPNGNMVLHDSKGNFIWQSFDY 160 (423)
Q Consensus 130 -~~~~~~~~L~d~GNlVl~~~~~~~lWqSFD~ 160 (423)
+.+...|+|+|+|||||++..+++|||||||
T Consensus 83 ~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~ 114 (114)
T smart00108 83 GANGNYVLVLLDDGNLVIYDSDGNFLWQSFDY 114 (114)
T ss_pred CCCCceEEEEeCCCCEEEECCCCCEEeCCCCC
Confidence 5556789999999999999999999999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.64 E-value=8.3e-16 Score=129.64 Aligned_cols=94 Identities=17% Similarity=0.310 Sum_probs=69.4
Q ss_pred CCCcceeEEeecCCCCccc---------eEEEEEEeecCCceeEEEE--ccCCcEEEEEEecCCCCCCceEEEEeeccCC
Q 048464 224 FSGLKNVTFNSAPETDEAF---------AYQLTLDSSSGGVLFWQGQ--RVDGNLRIFTYYDKVDSQPTEETFTLFDRDS 292 (423)
Q Consensus 224 ~~~~~~~~f~~~~~~~~~~---------~~~~~~~~~~~~~~~~~rl--d~dG~lr~y~~~~~~~~~~W~~~~~~~~~~~ 292 (423)
+|+|++..|++.|.+.... ..+.++.|...+...++|+ |+||++|+|.|.+ ..+.|.+.|.
T Consensus 3 sG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~--~~~~W~~~~~------ 74 (110)
T PF00954_consen 3 SGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNE--STQSWSVFWS------ 74 (110)
T ss_pred ccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEec--CCCcEEEEEE------
Confidence 3455556666665432111 1133444554455666676 9999999999987 5689999995
Q ss_pred ccCCCCcccccCCCCeeecCCCCCCCCCCCCCC
Q 048464 293 IWETECQLPERCGKFGLCDDNQCVACPTEKGLL 325 (423)
Q Consensus 293 ~p~~~C~~~g~CG~~giC~~~~~~~C~C~~g~~ 325 (423)
+|.++|++|+.||+||+|+.+..+.|.|++||.
T Consensus 75 ~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 75 APKDQCDVYGFCGPNGICNSNNSPKCSCLPGFE 107 (110)
T ss_pred ecccCCCCccccCCccEeCCCCCCceECCCCcC
Confidence 578999999999999999988888899999985
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.56 E-value=3.9e-15 Score=113.93 Aligned_cols=60 Identities=20% Similarity=0.469 Sum_probs=51.0
Q ss_pred ceeEEEEeccccccccccccCCCCCHHHHHHHhhcCCCeEEEEecC--CCCceEEcc-ccCcc
Q 048464 343 AFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQ--ETSKCWIAF-DLKTL 402 (423)
Q Consensus 343 ~~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~A~~y~~--~~~~C~~~~-~L~~~ 402 (423)
+++|++|++|++|+.+......++++++||++||+||||+||+|.+ ++++|++|. +|+|+
T Consensus 4 ~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 4 GDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 4689999999999886655434589999999999999999999975 568999995 88774
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.56 E-value=9.2e-15 Score=116.44 Aligned_cols=80 Identities=19% Similarity=0.376 Sum_probs=63.6
Q ss_pred cccccCC--ceeEEEEeccccccccccccCCCCCHHHHHHHhhcCCCeEEEEecCCCCceEEcc-ccCcceeeCCCCcEE
Q 048464 336 VNFCRIA--AFHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAF-DLKTLTKFPNSTHVG 412 (423)
Q Consensus 336 ~lsC~~~--~~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~A~~y~~~~~~C~~~~-~L~~~~~~~~~~~~~ 412 (423)
+++|+.. .+.|++++++++|+..+.. ..+++++||++||+||+|+||+|.+++++|++|. .+.+.+.....+.++
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 79 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNNGSGGCLLWNGLLNNLRSLSSGGGTL 79 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecCCCCeEEEEeceecceEeecCCCcEE
Confidence 4567654 3689999999998776543 3579999999999999999999987778999996 566665544446899
Q ss_pred EEEec
Q 048464 413 FIKVA 417 (423)
Q Consensus 413 yiKv~ 417 (423)
||||+
T Consensus 80 yiKv~ 84 (84)
T cd01098 80 YLRLA 84 (84)
T ss_pred EEEeC
Confidence 99986
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.33 E-value=2.1e-12 Score=102.43 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=57.0
Q ss_pred eeEEEEeccccccccccccCCCCCHHHHHHHhhc---CCCeEEEEecCCCCceEEcc-cc-CcceeeCCCCcEEEEEe
Q 048464 344 FHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCST---DCRCVGYFYHQETSKCWIAF-DL-KTLTKFPNSTHVGFIKV 416 (423)
Q Consensus 344 ~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~---nCsC~A~~y~~~~~~C~~~~-~L-~~~~~~~~~~~~~yiKv 416 (423)
..|+++.+|+.|+... .++++|+++|++ ||||+||+|...+.+|++|. +| .++++..+.+.++|||.
T Consensus 9 g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r~ 80 (80)
T cd00129 9 GTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNSMSGVRKEFSHGFDLYENK 80 (80)
T ss_pred CeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcchhhHHhccCCCceeEeEC
Confidence 4699999999876532 689999999999 99999999976557899995 78 88888877789999984
No 8
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.60 E-value=1.7e-07 Score=72.76 Aligned_cols=71 Identities=17% Similarity=0.328 Sum_probs=53.9
Q ss_pred eeEEEEeccccccccccccCCCCCHHHHHHHhhc-CCCeEEEEecCCCCceEEcc--ccCcceeeCCCCcEEEEE
Q 048464 344 FHYYKVEGVDHYISKYNNGTGPIRVEDCGNRCST-DCRCVGYFYHQETSKCWIAF--DLKTLTKFPNSTHVGFIK 415 (423)
Q Consensus 344 ~~f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~-nCsC~A~~y~~~~~~C~~~~--~L~~~~~~~~~~~~~yiK 415 (423)
..|.+++++.++...... ....++++|++.|++ +|+|.||.|..+++.|++|. .+.+.....+.+.++|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEEe
Confidence 468999999987544322 234799999999999 99999999976568999996 455555445556677776
No 9
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.57 E-value=2.8e-07 Score=77.96 Aligned_cols=54 Identities=37% Similarity=0.660 Sum_probs=44.1
Q ss_pred EEEEecCCcEEEEecC-CcEEEecCCCCC--ceeEEEEeeCCCeeeecCCCeeEeee
Q 048464 104 TFSLGTDGNLVLAEAN-GTVVWQSNTSNK--GVVGFKLLPNGNMVLHDSKGNFIWQS 157 (423)
Q Consensus 104 ~l~l~~~G~Lvl~~~~-~~~vWst~~~~~--~~~~~~L~d~GNlVl~~~~~~~lWqS 157 (423)
++.++.||+||+++.. +.+||++++... ....+.|+++|||||++.++.+||+|
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S 79 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSS 79 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEe
Confidence 4556689999999765 579999998533 23678999999999999888999998
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.34 E-value=6.5e-07 Score=76.04 Aligned_cols=53 Identities=34% Similarity=0.649 Sum_probs=43.6
Q ss_pred EEEec-CCcEEEEecC-CcEEEecCCCC--CceeEEEEeeCCCeeeecCCCeeEeee
Q 048464 105 FSLGT-DGNLVLAEAN-GTVVWQSNTSN--KGVVGFKLLPNGNMVLHDSKGNFIWQS 157 (423)
Q Consensus 105 l~l~~-~G~Lvl~~~~-~~~vWst~~~~--~~~~~~~L~d~GNlVl~~~~~~~lWqS 157 (423)
+.++. ||+||+++.. +.+||++++.. .....+.|+++|||||+|.++.++|+|
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S 80 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSS 80 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEe
Confidence 44555 9999999764 57999999854 345678999999999999989999997
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.24 E-value=2.4e-05 Score=66.29 Aligned_cols=100 Identities=22% Similarity=0.311 Sum_probs=64.2
Q ss_pred cEEEecCCcEEEEEEeCCCCCeeEEEEEEEecCCCCeeEEEEe-cCCCCCCCCcEEEEecCCcEEEEecCCcEEEecCCC
Q 048464 51 RMIRIFNSPFQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEA-NRGKPVRENATFSLGTDGNLVLAEANGTVVWQSNTS 129 (423)
Q Consensus 51 ~~l~s~~g~F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~A-Nr~~Pv~~~~~l~l~~~G~Lvl~~~~~~~vWst~~~ 129 (423)
+.+.+.++.+.|-|... +. |.| |.. ..++||.. +..........+.|.+||||||+|..+.++|++..
T Consensus 12 ~p~~~~s~~~~L~l~~d--Gn--Lvl-~~~-----~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~- 80 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSD--GN--LVL-YDS-----NGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFD- 80 (114)
T ss_dssp EEEEECETTEEEEEETT--SE--EEE-EET-----TTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTT-
T ss_pred cccccccccccceECCC--Ce--EEE-EcC-----CCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecC-
Confidence 34444447788888763 32 333 221 13569999 44443334678999999999999999999999943
Q ss_pred CCceeEEEEee--CCCeeeecCCCeeEeeeccCCC
Q 048464 130 NKGVVGFKLLP--NGNMVLHDSKGNFIWQSFDYPT 162 (423)
Q Consensus 130 ~~~~~~~~L~d--~GNlVl~~~~~~~lWqSFD~PT 162 (423)
....+.+.+++ .||++ ......++|.|=+.|+
T Consensus 81 ~ptdt~L~~q~l~~~~~~-~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 81 YPTDTLLPGQKLGDGNVT-GKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SSS-EEEEEET--TSEEE-EESTSSEEEESS----
T ss_pred CCccEEEeccCcccCCCc-cccceEEeECCCCCCC
Confidence 33445567777 88888 7666789999877764
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=98.00 E-value=7.9e-06 Score=63.53 Aligned_cols=54 Identities=19% Similarity=0.435 Sum_probs=42.3
Q ss_pred EEEEeccccccccccccCCCCCHHHHHHHhhcCCCeEEEEecCCCCceEEccccC
Q 048464 346 YYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAFDLK 400 (423)
Q Consensus 346 f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~A~~y~~~~~~C~~~~~L~ 400 (423)
|..+++++++..+..... ..+.++|+++|+.+|+|.||.|..+.+.|+++....
T Consensus 6 ~~~~~~~~~~g~d~~~~~-~~s~~~Cq~~C~~~~~C~afT~~~~~~~C~lk~~~~ 59 (73)
T cd01100 6 FRQGSNVDFRGGDLSTVF-ASSAEQCQAACTADPGCLAFTYNTKSKKCFLKSSEG 59 (73)
T ss_pred ccccCCCccccCCcceee-cCCHHHHHHHcCCCCCceEEEEECCCCeEEcccCCC
Confidence 334568887776654433 468999999999999999999987778999997543
No 13
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=95.49 E-value=0.02 Score=45.30 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=40.4
Q ss_pred EeccccccccccccCCCCCHHHHHHHhhcCCCeEEEEecCCCC---ceEEccc
Q 048464 349 VEGVDHYISKYNNGTGPIRVEDCGNRCSTDCRCVGYFYHQETS---KCWIAFD 398 (423)
Q Consensus 349 l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCsC~A~~y~~~~~---~C~~~~~ 398 (423)
.+++++++.+..... ..+.++|++.|..+=.|.||.|..... .|+++..
T Consensus 6 ~~~~df~G~Dl~~~~-~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTVY-VPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeeee-cCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 467888887776544 468999999999999999999986666 8999864
No 14
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=95.29 E-value=0.016 Score=41.01 Aligned_cols=32 Identities=19% Similarity=0.714 Sum_probs=18.0
Q ss_pred CCCHHHHHHHhhcCCCeEEEEecC-----CCCceEEc
Q 048464 365 PIRVEDCGNRCSTDCRCVGYFYHQ-----ETSKCWIA 396 (423)
Q Consensus 365 ~~s~~~C~~~CL~nCsC~A~~y~~-----~~~~C~~~ 396 (423)
..++++|.++|..+=.|.+|.|.. ..+.|+|+
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred CCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 468999999999999999999976 45788875
No 15
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=95.04 E-value=0.025 Score=43.51 Aligned_cols=51 Identities=16% Similarity=0.448 Sum_probs=39.4
Q ss_pred EEEEeccccccccccccCCCCCHHHHHHHhhcCCC-eEEEEecCCCCceEEcc
Q 048464 346 YYKVEGVDHYISKYNNGTGPIRVEDCGNRCSTDCR-CVGYFYHQETSKCWIAF 397 (423)
Q Consensus 346 f~~l~~v~~~~~~~~~~~~~~s~~~C~~~CL~nCs-C~A~~y~~~~~~C~~~~ 397 (423)
|.++++..+........ ...++++|.+.|+.+=. |.+|.|......|.+..
T Consensus 4 f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~~~~~C~L~~ 55 (79)
T PF00024_consen 4 FERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDPSSKTCYLSS 55 (79)
T ss_dssp EEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEETTTTEEEEEC
T ss_pred eEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEECCCCEEEEcC
Confidence 66777766655333222 23589999999999999 99999998888999975
No 16
>smart00605 CW CW domain.
Probab=89.32 E-value=1.2 Score=35.94 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhhcCCCeEEEEecCCCCceEEcc--ccCcceeeCC-CCcEEEEEecC
Q 048464 365 PIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAF--DLKTLTKFPN-STHVGFIKVAP 418 (423)
Q Consensus 365 ~~s~~~C~~~CL~nCsC~A~~y~~~~~~C~~~~--~L~~~~~~~~-~~~~~yiKv~~ 418 (423)
..+.++|.+.|..+..|+.+..+. ...|.+.. .+..+++... .+..+=||+..
T Consensus 21 ~~sw~~Ci~~C~~~~~Cvlay~~~-~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~ 76 (94)
T smart00605 21 TLSWDECIQKCYEDSNCVLAYGNS-SETCYLFSYGTVLTVKKLSSSSGKKVAFKVST 76 (94)
T ss_pred CCCHHHHHHHHhCCCceEEEecCC-CCceEEEEcCCeEEEEEccCCCCcEEEEEEeC
Confidence 468999999999999999876543 46898863 4556666543 45556678754
No 17
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=88.20 E-value=1.3 Score=33.54 Aligned_cols=50 Identities=24% Similarity=0.501 Sum_probs=36.4
Q ss_pred CCCHHHHHHHhhcCCCeEEEEecCCCCceEEcc--ccCcceeeC-CCCcEEEEEe
Q 048464 365 PIRVEDCGNRCSTDCRCVGYFYHQETSKCWIAF--DLKTLTKFP-NSTHVGFIKV 416 (423)
Q Consensus 365 ~~s~~~C~~~CL~nCsC~A~~y~~~~~~C~~~~--~L~~~~~~~-~~~~~~yiKv 416 (423)
..+.++|-+.|..+=.|.++.++ ...|.+.. .+..+++.. ..+..+-+|+
T Consensus 19 ~~sw~~Cv~~C~~~~~C~la~~~--~~~C~~y~~~~i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 19 NTSWDDCVQKCYNDENCVLAYFD--SGKCYLYNYGSISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred CCCHHHHhHHhCCCCEEEEEEeC--CCCEEEEEcCCEEEEEEeecCCCeEEEEEC
Confidence 46899999999999999999887 56899873 555555543 3444444553
No 18
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=87.20 E-value=0.89 Score=35.71 Aligned_cols=33 Identities=18% Similarity=0.593 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhhc--CCCeEEEEecCCCCceEEcc
Q 048464 365 PIRVEDCGNRCST--DCRCVGYFYHQETSKCWIAF 397 (423)
Q Consensus 365 ~~s~~~C~~~CL~--nCsC~A~~y~~~~~~C~~~~ 397 (423)
..++++|.++|++ +=.|.+|.|......|.+-.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~ 58 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYKSKECILSD 58 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeC
Confidence 3689999999999 99999999987788999864
No 19
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.07 E-value=21 Score=36.29 Aligned_cols=56 Identities=21% Similarity=0.457 Sum_probs=36.2
Q ss_pred CcEEEEe-cCCcEEEEec-CCcEEEecCCCCC----ce----eEEEEeeCCCeeeecC-CCeeEeee
Q 048464 102 NATFSLG-TDGNLVLAEA-NGTVVWQSNTSNK----GV----VGFKLLPNGNMVLHDS-KGNFIWQS 157 (423)
Q Consensus 102 ~~~l~l~-~~G~Lvl~~~-~~~~vWst~~~~~----~~----~~~~L~d~GNlVl~~~-~~~~lWqS 157 (423)
+..+.+. .+|.|+-+|. +|+++|+.+..+. .+ ....-..+|.|+-+|. +|+++|+-
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 3455554 5788888886 6999999876432 11 1112234677877775 68999985
No 20
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=71.00 E-value=16 Score=33.64 Aligned_cols=71 Identities=23% Similarity=0.442 Sum_probs=43.3
Q ss_pred eeEEEEecC----CCCC----CCCcEEEE-ecCCcEEEEec-CCcEEEecCCCCCc--e-----eEEE-EeeCCCeeeec
Q 048464 87 YRWVWEANR----GKPV----RENATFSL-GTDGNLVLAEA-NGTVVWQSNTSNKG--V-----VGFK-LLPNGNMVLHD 148 (423)
Q Consensus 87 ~tvVW~ANr----~~Pv----~~~~~l~l-~~~G~Lvl~~~-~~~~vWst~~~~~~--~-----~~~~-L~d~GNlVl~~ 148 (423)
...+|..+- ..++ .++..+.+ +.+|.|+.+|. +|+++|+....... . ..+. ...+|.|+..|
T Consensus 13 G~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d 92 (238)
T PF13360_consen 13 GKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALD 92 (238)
T ss_dssp TEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecc
Confidence 356787653 2222 23344444 58899999996 89999998763221 0 0112 22345566677
Q ss_pred -CCCeeEeee
Q 048464 149 -SKGNFIWQS 157 (423)
Q Consensus 149 -~~~~~lWqS 157 (423)
.+|+++|+.
T Consensus 93 ~~tG~~~W~~ 102 (238)
T PF13360_consen 93 AKTGKVLWSI 102 (238)
T ss_dssp TTTSCEEEEE
T ss_pred cCCcceeeee
Confidence 679999995
No 21
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=64.36 E-value=26 Score=35.26 Aligned_cols=49 Identities=24% Similarity=0.616 Sum_probs=26.2
Q ss_pred ecCCcEEEEe-cCCcEEEecCCCCC---ce-----eEEEEeeCCCeeeecC-CCeeEee
Q 048464 108 GTDGNLVLAE-ANGTVVWQSNTSNK---GV-----VGFKLLPNGNMVLHDS-KGNFIWQ 156 (423)
Q Consensus 108 ~~~G~Lvl~~-~~~~~vWst~~~~~---~~-----~~~~L~d~GNlVl~~~-~~~~lWq 156 (423)
+.+|.|.-+| .+|+++|+.+.... ++ ....-..+|+|+-.|. +|+++|+
T Consensus 72 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 72 DADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWR 130 (377)
T ss_pred CCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeee
Confidence 3456676666 46777787654321 00 0111224566666665 5777775
No 22
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=64.00 E-value=45 Score=30.57 Aligned_cols=71 Identities=21% Similarity=0.477 Sum_probs=45.3
Q ss_pred eeEEEEecCCCCCC-----CCcE-EEEecCCcEEEEe-cCCcEEEec-CCC----C---Cc-ee----EEEEe-eCCCee
Q 048464 87 YRWVWEANRGKPVR-----ENAT-FSLGTDGNLVLAE-ANGTVVWQS-NTS----N---KG-VV----GFKLL-PNGNMV 145 (423)
Q Consensus 87 ~tvVW~ANr~~Pv~-----~~~~-l~l~~~G~Lvl~~-~~~~~vWst-~~~----~---~~-~~----~~~L~-d~GNlV 145 (423)
-+++|...-..++. .... +..+.+|.|..+| .+|.++|.. ... . .. .. .+.+. .+|.|+
T Consensus 56 G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 56 GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEE
Confidence 46899988765533 2344 4445678888888 789999994 321 1 01 00 12233 378898
Q ss_pred eec-CCCeeEeee
Q 048464 146 LHD-SKGNFIWQS 157 (423)
Q Consensus 146 l~~-~~~~~lWqS 157 (423)
..| .+|+++|+-
T Consensus 136 ~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 136 ALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 888 468999986
No 23
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.76 E-value=40 Score=32.90 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=33.8
Q ss_pred eeEEEEecCCCCCCCC-----cEEEE-ecCCcEEEEecCCcEEEecCCCC
Q 048464 87 YRWVWEANRGKPVREN-----ATFSL-GTDGNLVLAEANGTVVWQSNTSN 130 (423)
Q Consensus 87 ~tvVW~ANr~~Pv~~~-----~~l~l-~~~G~Lvl~~~~~~~vWst~~~~ 130 (423)
.+..|.|.|..|+-.. +.+.+ +-||+|.-.|+.|+.||.-.+.+
T Consensus 169 ~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 169 STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 4789999999998643 34444 46999988899999999766543
No 24
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=60.24 E-value=25 Score=35.76 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=11.0
Q ss_pred eeCCCeeeecC-CCeeEeee
Q 048464 139 LPNGNMVLHDS-KGNFIWQS 157 (423)
Q Consensus 139 ~d~GNlVl~~~-~~~~lWqS 157 (423)
.++|.|...|. +|+++|+-
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred eCCCEEEEEECCCCCEEEEE
Confidence 44566665554 46666664
No 25
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=54.51 E-value=14 Score=22.95 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=20.2
Q ss_pred CcccccCCCCeeecCC-CCCCCCCCCCCCCC
Q 048464 298 CQLPERCGKFGLCDDN-QCVACPTEKGLLGW 327 (423)
Q Consensus 298 C~~~g~CG~~giC~~~-~~~~C~C~~g~~~~ 327 (423)
|.....|..++.|... ....|.|+.||...
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4334578888899753 34569999887543
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=54.00 E-value=23 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=16.2
Q ss_pred cEEEEecCCcEEEEecCCcEEE
Q 048464 103 ATFSLGTDGNLVLAEANGTVVW 124 (423)
Q Consensus 103 ~~l~l~~~G~Lvl~~~~~~~vW 124 (423)
.-+.+..+|+|++.|....-||
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEE
Confidence 3577778888888887666555
No 27
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=53.86 E-value=19 Score=29.30 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=22.7
Q ss_pred eeEEEEecCCCCCCCCcEEEEecCCcEEEEe
Q 048464 87 YRWVWEANRGKPVRENATFSLGTDGNLVLAE 117 (423)
Q Consensus 87 ~tvVW~ANr~~Pv~~~~~l~l~~~G~Lvl~~ 117 (423)
+++.|+-+....+..+.++.++.+|+|.+.+
T Consensus 34 P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~ 64 (95)
T cd05845 34 LRIYWMNSDLLHITQDERVSMGQNGNLYFAN 64 (95)
T ss_pred CEEEEECCCCccccccccEEECCCceEEEEE
Confidence 5788995554556656778888889998864
No 28
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=47.35 E-value=60 Score=34.33 Aligned_cols=71 Identities=21% Similarity=0.479 Sum_probs=43.8
Q ss_pred eeEEEEecCC-------CCCCCCcEEEEe-cCCcEEEEec-CCcEEEecCCCCC-----------cee----EEEE--ee
Q 048464 87 YRWVWEANRG-------KPVRENATFSLG-TDGNLVLAEA-NGTVVWQSNTSNK-----------GVV----GFKL--LP 140 (423)
Q Consensus 87 ~tvVW~ANr~-------~Pv~~~~~l~l~-~~G~Lvl~~~-~~~~vWst~~~~~-----------~~~----~~~L--~d 140 (423)
.+++|..+-. .|+-.+.++.+. .+|.|+-+|. .|+++|+...... +++ ...+ ..
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~ 118 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF 118 (488)
T ss_pred ceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC
Confidence 4578887644 355444555554 5799888886 6899998764321 000 0111 23
Q ss_pred CCCeeeecC-CCeeEeee
Q 048464 141 NGNMVLHDS-KGNFIWQS 157 (423)
Q Consensus 141 ~GNlVl~~~-~~~~lWqS 157 (423)
+|.++-+|. +|+++|+-
T Consensus 119 ~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 119 DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCeEEEEECCCCCEeeee
Confidence 677777776 58999994
No 29
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=44.32 E-value=26 Score=34.02 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=28.2
Q ss_pred eeEEEEecCCCCCCCCcEEEEecCCcEEEEec
Q 048464 87 YRWVWEANRGKPVRENATFSLGTDGNLVLAEA 118 (423)
Q Consensus 87 ~tvVW~ANr~~Pv~~~~~l~l~~~G~Lvl~~~ 118 (423)
++..|+--.++++++++.+.|++.|.|++.|=
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F 44 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGKLMFKNF 44 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCceEEeecc
Confidence 46799998899999999999999999999753
No 30
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=43.89 E-value=3.2e+02 Score=26.95 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=6.2
Q ss_pred eeEEEEecCC
Q 048464 87 YRWVWEANRG 96 (423)
Q Consensus 87 ~tvVW~ANr~ 96 (423)
..|+|..+..
T Consensus 175 G~I~W~lgG~ 184 (299)
T PF14269_consen 175 GKIIWRLGGK 184 (299)
T ss_pred CcEEEEeCCC
Confidence 4677776543
No 31
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=43.55 E-value=1.1e+02 Score=30.62 Aligned_cols=71 Identities=14% Similarity=0.383 Sum_probs=44.2
Q ss_pred eeEEEEecCCC-----CCCCCcEEEE-ecCCcEEEEec-CCcEEEecCCCCC----ce----eEEEEeeCCCeeeecC-C
Q 048464 87 YRWVWEANRGK-----PVRENATFSL-GTDGNLVLAEA-NGTVVWQSNTSNK----GV----VGFKLLPNGNMVLHDS-K 150 (423)
Q Consensus 87 ~tvVW~ANr~~-----Pv~~~~~l~l-~~~G~Lvl~~~-~~~~vWst~~~~~----~~----~~~~L~d~GNlVl~~~-~ 150 (423)
-+++|.-+-.. |+-++..+.+ +.+|.|+-+|. +|.++|+....+. .. ....-..+|.|+..|. +
T Consensus 85 G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~t 164 (377)
T TIGR03300 85 GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAAT 164 (377)
T ss_pred CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCC
Confidence 35788755443 3333445555 46899998887 7999998765321 11 1112235677887875 6
Q ss_pred CeeEeee
Q 048464 151 GNFIWQS 157 (423)
Q Consensus 151 ~~~lWqS 157 (423)
|+++|+-
T Consensus 165 G~~~W~~ 171 (377)
T TIGR03300 165 GERLWTY 171 (377)
T ss_pred CceeeEE
Confidence 8899984
No 32
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=38.54 E-value=80 Score=32.81 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=33.8
Q ss_pred ccEEEecCCc-EEEEEEeCCCCCeeEEEEEEEecCCCCeeEEEEecCCCCCCCCcEEEEecCCcEEEEecC
Q 048464 50 YRMIRIFNSP-FQLGFYNTTPNAYTLALRWGIQRNEPLYRWVWEANRGKPVRENATFSLGTDGNLVLAEAN 119 (423)
Q Consensus 50 ~~~l~s~~g~-F~lGF~~~~~~~~~l~Iw~~~~~~~~~~tvVW~ANr~~Pv~~~~~l~l~~~G~Lvl~~~~ 119 (423)
.|.+.||||. +-.-||.+..+.|.| +-|+.+.. . + .+|+..++ ..|-+||.|++..+.
T Consensus 310 ~r~vrSPNGEDvLYvF~~~~~g~~~L-l~YN~I~k----~---v---~tPi~chG-~alf~DG~l~~fra~ 368 (448)
T PF12458_consen 310 ERKVRSPNGEDVLYVFYAREEGRYLL-LPYNLIRK----E---V---ATPIICHG-YALFEDGRLVYFRAE 368 (448)
T ss_pred EEEecCCCCceEEEEEEECCCCcEEE-Eechhhhh----h---h---cCCeeccc-eeEecCCEEEEEecC
Confidence 4556777776 666777776665433 34554422 1 1 34666544 345567888877554
No 33
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=38.48 E-value=30 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=23.8
Q ss_pred cCCCCcccccCCCCeeecCCCCCCCCCCCCCCC
Q 048464 294 WETECQLPERCGKFGLCDDNQCVACPTEKGLLG 326 (423)
Q Consensus 294 p~~~C~~~g~CG~~giC~~~~~~~C~C~~g~~~ 326 (423)
|.+.|....-|-.++.|..+ .|.|++|+..
T Consensus 18 ~g~~C~~~~qC~~~s~C~~g---~C~C~~g~~~ 47 (52)
T PF01683_consen 18 PGESCESDEQCIGGSVCVNG---RCQCPPGYVE 47 (52)
T ss_pred CCCCCCCcCCCCCcCEEcCC---EeECCCCCEe
Confidence 56789999999999999643 4888888643
No 34
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=36.22 E-value=1.2e+02 Score=22.80 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=22.1
Q ss_pred CeeEEEEecCCCCCCCCcEEEEecCCcEEEEec
Q 048464 86 LYRWVWEANRGKPVRENATFSLGTDGNLVLAEA 118 (423)
Q Consensus 86 ~~tvVW~ANr~~Pv~~~~~l~l~~~G~Lvl~~~ 118 (423)
.+++.|.-+. .++..+..+.+..+|.|+|.+-
T Consensus 15 ~p~v~W~k~~-~~l~~~~r~~~~~~g~L~I~~v 46 (73)
T cd05852 15 KPKFSWSKGT-ELLVNNSRISIWDDGSLEILNI 46 (73)
T ss_pred CCEEEEEeCC-EecccCCCEEEcCCCEEEECcC
Confidence 3578998653 4555556777777888888643
No 35
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.26 E-value=2.7e+02 Score=27.54 Aligned_cols=45 Identities=20% Similarity=0.509 Sum_probs=27.8
Q ss_pred EEEecCCcEEE----------Ee-cCCcEEEecCCC-CC----------ceeEEEEe----eCCCeeeecC
Q 048464 105 FSLGTDGNLVL----------AE-ANGTVVWQSNTS-NK----------GVVGFKLL----PNGNMVLHDS 149 (423)
Q Consensus 105 l~l~~~G~Lvl----------~~-~~~~~vWst~~~-~~----------~~~~~~L~----d~GNlVl~~~ 149 (423)
+...++|+++| .| .+|.++|..... +. ..--|+++ ++|++-|.|.
T Consensus 149 V~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 149 VDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 45556777654 35 468899987533 10 01235677 7888888876
No 36
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=34.25 E-value=2.3e+02 Score=23.89 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCcEEEEecCCcEEEEecCCcE------EEecCC---------CCC---ceeEEEEeeCCCeeeecCCCee
Q 048464 101 ENATFSLGTDGNLVLAEANGTV------VWQSNT---------SNK---GVVGFKLLPNGNMVLHDSKGNF 153 (423)
Q Consensus 101 ~~~~l~l~~~G~Lvl~~~~~~~------vWst~~---------~~~---~~~~~~L~d~GNlVl~~~~~~~ 153 (423)
+...|.|..||.|+|..+++.- -|+-.. .+. .-+...=+++|-|||.|++++.
T Consensus 34 ~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg~~ 104 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDGKK 104 (111)
T ss_pred CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEEEEEecCCeEEEEcCCCCE
Confidence 4578999999999987554321 133210 000 1111223678899999988753
No 37
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=33.71 E-value=40 Score=35.67 Aligned_cols=53 Identities=34% Similarity=0.651 Sum_probs=30.7
Q ss_pred CCcEEEEecCCcEEEecCCCCCceeEEEEeeCCCeeee--------cCCCeeEeeeccCCCC
Q 048464 110 DGNLVLAEANGTVVWQSNTSNKGVVGFKLLPNGNMVLH--------DSKGNFIWQSFDYPTD 163 (423)
Q Consensus 110 ~G~Lvl~~~~~~~vWst~~~~~~~~~~~L~d~GNlVl~--------~~~~~~lWqSFD~PTD 163 (423)
.+..++.|.+|.++|...........+..+++|+|... |-.|+++|+ ++.|..
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~G~v~~~-~~l~~~ 187 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLLGKVIWE-YDLPGG 187 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT--EEEE-EE--TT
T ss_pred CceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCCCCEEEe-eecCCc
Confidence 46788899999999987653322222678999999864 445889999 777663
No 38
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=33.56 E-value=48 Score=21.81 Aligned_cols=9 Identities=33% Similarity=1.077 Sum_probs=3.2
Q ss_pred EEEecCCCC
Q 048464 90 VWEANRGKP 98 (423)
Q Consensus 90 VW~ANr~~P 98 (423)
+|......|
T Consensus 4 ~W~~~~~~~ 12 (40)
T PF13570_consen 4 LWSYDTGGP 12 (40)
T ss_dssp EEEEE-SS-
T ss_pred eEEEECCCC
Confidence 455444433
No 39
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=33.38 E-value=1.7e+02 Score=29.38 Aligned_cols=72 Identities=29% Similarity=0.488 Sum_probs=44.3
Q ss_pred CeeEEEEecCCC-C------CCCCcEEEEe-cCCcEEEEecC-CcEEEecCCCC---C----------ceeEEEEee--C
Q 048464 86 LYRWVWEANRGK-P------VRENATFSLG-TDGNLVLAEAN-GTVVWQSNTSN---K----------GVVGFKLLP--N 141 (423)
Q Consensus 86 ~~tvVW~ANr~~-P------v~~~~~l~l~-~~G~Lvl~~~~-~~~vWst~~~~---~----------~~~~~~L~d--~ 141 (423)
+-+.+|..+... | +.....+.+. .+|.|+-+|++ |..+|...... . +.+.+ ..+ +
T Consensus 130 ~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~-~~~~~~ 208 (370)
T COG1520 130 TGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV-GSDGYD 208 (370)
T ss_pred CCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE-ecCCCc
Confidence 356899887776 2 2234556565 67999988887 99999854421 1 11111 122 4
Q ss_pred CCeeeecC-CCeeEeeec
Q 048464 142 GNMVLHDS-KGNFIWQSF 158 (423)
Q Consensus 142 GNlVl~~~-~~~~lWqSF 158 (423)
|+|+=.|. +|..+|+.+
T Consensus 209 ~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 209 GILYALNAEDGTLKWSQK 226 (370)
T ss_pred ceEEEEEccCCcEeeeee
Confidence 56666665 688899853
No 40
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=31.26 E-value=13 Score=25.25 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=22.5
Q ss_pred CCCccc-ccCCCCeeecCC-CCCCCCCCCCCC
Q 048464 296 TECQLP-ERCGKFGLCDDN-QCVACPTEKGLL 325 (423)
Q Consensus 296 ~~C~~~-g~CG~~giC~~~-~~~~C~C~~g~~ 325 (423)
|+|... ..|..++.|... ..-.|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 788874 489999999743 344689999875
No 41
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=30.94 E-value=57 Score=20.71 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=21.0
Q ss_pred CCCcccccCCCCeeecCC-CCCCCCCCCCCC
Q 048464 296 TECQLPERCGKFGLCDDN-QCVACPTEKGLL 325 (423)
Q Consensus 296 ~~C~~~g~CG~~giC~~~-~~~~C~C~~g~~ 325 (423)
++|.....|...+.|... ....|.|++|+.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567654678888899743 234599988875
No 42
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=30.09 E-value=50 Score=25.29 Aligned_cols=18 Identities=22% Similarity=1.021 Sum_probs=8.7
Q ss_pred eeeecCCCeeEeeeccCC
Q 048464 144 MVLHDSKGNFIWQSFDYP 161 (423)
Q Consensus 144 lVl~~~~~~~lWqSFD~P 161 (423)
||+||.+|.-+|..|.+-
T Consensus 35 lvvRd~~g~mvWRaWNFE 52 (70)
T PF06006_consen 35 LVVRDTEGQMVWRAWNFE 52 (70)
T ss_dssp EEEE-SS--EEEEEESSS
T ss_pred EEEEcCCCcEEEEeeccC
Confidence 556666666666665543
No 43
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=30.08 E-value=1.3e+02 Score=31.71 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=26.0
Q ss_pred eEEEEecCCCCCCCCcEEEEecCCcE--------EEEecCCcEEEecCCCCCc---eeEEEEeeCCCeeee
Q 048464 88 RWVWEANRGKPVRENATFSLGTDGNL--------VLAEANGTVVWQSNTSNKG---VVGFKLLPNGNMVLH 147 (423)
Q Consensus 88 tvVW~ANr~~Pv~~~~~l~l~~~G~L--------vl~~~~~~~vWst~~~~~~---~~~~~L~d~GNlVl~ 147 (423)
.|+|.-......... +.+..+|+| ...|-.|+++|.-...+.. .-.+..+++||++++
T Consensus 138 ~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l 206 (477)
T PF05935_consen 138 DVRWYLPLDSGSDNS--FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLIL 206 (477)
T ss_dssp -EEEEE-GGGT--SS--EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEE
T ss_pred cEEEEEccCccccce--eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEE
Confidence 578876655332111 334445544 4457779999986554322 234678899998875
No 44
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.96 E-value=1.1e+02 Score=18.79 Aligned_cols=19 Identities=37% Similarity=0.781 Sum_probs=11.8
Q ss_pred ecCCcEEEEec-CCcEEEec
Q 048464 108 GTDGNLVLAEA-NGTVVWQS 126 (423)
Q Consensus 108 ~~~G~Lvl~~~-~~~~vWst 126 (423)
+.+|.|+-+|. +|.++|..
T Consensus 13 ~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 13 STDGTLYALDAKTGEILWTY 32 (33)
T ss_pred cCCCEEEEEEcccCcEEEEc
Confidence 34566666665 56777753
No 45
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=26.61 E-value=2e+02 Score=30.66 Aligned_cols=67 Identities=18% Similarity=0.500 Sum_probs=45.9
Q ss_pred EEEEecCCcEEEEecCCcE-EEecCCC---------CCceeEEEEeeCCCeeeecCCCe-eEeee-ccCCCCcccCCcc
Q 048464 104 TFSLGTDGNLVLAEANGTV-VWQSNTS---------NKGVVGFKLLPNGNMVLHDSKGN-FIWQS-FDYPTDTLLVGQS 170 (423)
Q Consensus 104 ~l~l~~~G~Lvl~~~~~~~-vWst~~~---------~~~~~~~~L~d~GNlVl~~~~~~-~lWqS-FD~PTDTLLPGq~ 170 (423)
.++|.++|..+--|++|.+ ||+-.+. ..++-.+.|+.+|-|+=-..+-+ ++|.. ..---+|=||.|.
T Consensus 251 ~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 251 CVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence 4777889998777888875 8987652 23566788999999987333333 78873 1122577788775
No 46
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=25.44 E-value=90 Score=26.71 Aligned_cols=56 Identities=16% Similarity=0.376 Sum_probs=38.6
Q ss_pred EEEecCCCCCceeEEEEeeCCCeeeecCCC------eeEeeeccCCCCcccCCcceeecCee
Q 048464 122 VVWQSNTSNKGVVGFKLLPNGNMVLHDSKG------NFIWQSFDYPTDTLLVGQSLRVGGVT 177 (423)
Q Consensus 122 ~vWst~~~~~~~~~~~L~d~GNlVl~~~~~------~~lWqSFD~PTDTLLPGq~L~~~g~~ 177 (423)
++|++....-+.-...+++.+=|+|.+.+. --+-+.++.....+-||++|..|++.
T Consensus 3 ~~y~t~I~~IG~~a~~f~~e~mlIlFge~Ap~~L~d~cvih~~~~~~~~i~~Gd~l~i~~~~ 64 (121)
T TIGR00849 3 IIYENTVKDIGDLAITFLEEGMIITFGEGAPDDLAEYCFIHNIKEVKGTLKPGQVFMIGGIA 64 (121)
T ss_pred EEEEEEEEEehhhHHhhccCCEEEEeCCCCChHHheeEEEEEcCcccCCcCCCCEEEECCEE
Confidence 567776543333223556666677776542 36789999999999999999997653
No 47
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=24.84 E-value=2.8e+02 Score=29.72 Aligned_cols=70 Identities=17% Similarity=0.418 Sum_probs=41.5
Q ss_pred eEEEEecCC-------CCCCCCcEEEEe-cCCcEEEEec-CCcEEEecCCCCC--------------cee----EEEE-e
Q 048464 88 RWVWEANRG-------KPVRENATFSLG-TDGNLVLAEA-NGTVVWQSNTSNK--------------GVV----GFKL-L 139 (423)
Q Consensus 88 tvVW~ANr~-------~Pv~~~~~l~l~-~~G~Lvl~~~-~~~~vWst~~~~~--------------~~~----~~~L-~ 139 (423)
+++|...-. .|+-.+.+|.+. .+|.|+=+|. .|+++|+...... +++ .+.+ .
T Consensus 48 ~~~W~~~~g~~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t 127 (527)
T TIGR03075 48 QPAWTFSLGKLRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT 127 (527)
T ss_pred eEEEEEECCCCCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc
Confidence 456765443 354445666664 5687777786 5899998654211 110 0111 2
Q ss_pred eCCCeeeecC-CCeeEeee
Q 048464 140 PNGNMVLHDS-KGNFIWQS 157 (423)
Q Consensus 140 d~GNlVl~~~-~~~~lWqS 157 (423)
-+|.|+-+|. +|+++|+-
T Consensus 128 ~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 128 LDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCCEEEEEECCCCCEEeec
Confidence 3567777776 68999984
No 48
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=24.52 E-value=2.1e+02 Score=29.54 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=24.6
Q ss_pred CcEEEEecCCcEEEecCCCC--CceeEEEEeeCCCeeeecCCCeeEe
Q 048464 111 GNLVLAEANGTVVWQSNTSN--KGVVGFKLLPNGNMVLHDSKGNFIW 155 (423)
Q Consensus 111 G~Lvl~~~~~~~vWst~~~~--~~~~~~~L~d~GNlVl~~~~~~~lW 155 (423)
|++++.+.+|..-|...... .....+...++|.+||....|.++|
T Consensus 259 G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~ 305 (398)
T PLN00033 259 GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV 305 (398)
T ss_pred ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE
Confidence 44444344444456533221 2234455678899998877666555
No 49
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=24.26 E-value=65 Score=20.03 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=20.2
Q ss_pred CCCcccccCCCCeeecCC-CCCCCCCCCCCC
Q 048464 296 TECQLPERCGKFGLCDDN-QCVACPTEKGLL 325 (423)
Q Consensus 296 ~~C~~~g~CG~~giC~~~-~~~~C~C~~g~~ 325 (423)
++|.....|...+.|... ....|.|++|+.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567654568878889643 234589988864
No 50
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=22.25 E-value=70 Score=20.55 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=16.6
Q ss_pred ccCCCCeeecCCCCCCCCCCCCCC
Q 048464 302 ERCGKFGLCDDNQCVACPTEKGLL 325 (423)
Q Consensus 302 g~CG~~giC~~~~~~~C~C~~g~~ 325 (423)
..|...|.|... .-.|.|.+||.
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~ 28 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYT 28 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCc
Confidence 468889999744 33688888863
No 51
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=21.90 E-value=1.7e+02 Score=20.45 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=10.5
Q ss_pred ecCCcEEEEecCCcEEEe
Q 048464 108 GTDGNLVLAEANGTVVWQ 125 (423)
Q Consensus 108 ~~~G~Lvl~~~~~~~vWs 125 (423)
+.+|.+.|+.-++.-||+
T Consensus 30 t~~g~v~v~Rl~~qriw~ 47 (47)
T PF12894_consen 30 TEDGEVLVYRLNWQRIWS 47 (47)
T ss_pred ECCCeEEEEECCCcCccC
Confidence 455666666555555663
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.81 E-value=2.5e+02 Score=31.48 Aligned_cols=50 Identities=30% Similarity=0.683 Sum_probs=37.8
Q ss_pred cEEEEecCCcEEEEec-CCcE-EEecCCC---------CCceeEEEEeeCCCeeeecC-CCe
Q 048464 103 ATFSLGTDGNLVLAEA-NGTV-VWQSNTS---------NKGVVGFKLLPNGNMVLHDS-KGN 152 (423)
Q Consensus 103 ~~l~l~~~G~Lvl~~~-~~~~-vWst~~~---------~~~~~~~~L~d~GNlVl~~~-~~~ 152 (423)
..+..+.||.++.+.+ +|.+ ||.+... ..+|+..+..-+||.+|-.+ +|+
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe
Confidence 4688889999998854 5666 9988742 24577888999999999754 454
No 53
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=21.26 E-value=1e+02 Score=20.11 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=17.4
Q ss_pred ecCCcEEEEec-CCcEEEecCCC
Q 048464 108 GTDGNLVLAEA-NGTVVWQSNTS 129 (423)
Q Consensus 108 ~~~G~Lvl~~~-~~~~vWst~~~ 129 (423)
+.+|.|+-+|. .|..+|+.++.
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESS
T ss_pred CCCCEEEEEECCCCCEEEeeeCC
Confidence 56788888886 68899987764
No 54
>PHA02887 EGF-like protein; Provisional
Probab=20.94 E-value=86 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCCc--ccccCCCCeeecCC---CCCCCCCCCCCC
Q 048464 296 TECQ--LPERCGKFGLCDDN---QCVACPTEKGLL 325 (423)
Q Consensus 296 ~~C~--~~g~CG~~giC~~~---~~~~C~C~~g~~ 325 (423)
.+|. +-++|= +|.|.+- +.+.|.|++||.
T Consensus 84 ~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 84 EKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred cccChHhhCEee-CCEEEccccCCCceeECCCCcc
Confidence 5675 567787 7899752 467899999984
Done!