BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048466
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 52 SCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQL 65
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 49 EGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNEWTKTCPLCRFSM 98
+G C VCL+ L+ G+E R LP C H FH CVD W + TCPLCR ++
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99
C VC+ + +RVLPC H FH CVD+W + +TCP+CR G
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-KANRTCPICRADSG 71
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 40 NRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
++KE N E C VCL K DE+ + PC H FHR C+ +W E K CPLC +
Sbjct: 7 GKVKELNLHE--LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLCNMPV 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 51 ESCC-VCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
E CC +C S +GD LPC H FH+ CV W + + TCP+CR
Sbjct: 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCR 84
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
G C VC G+ +R LPC H FH +C+ W E +CP+CR S+
Sbjct: 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL-EQHDSCPVCRKSL 62
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
E CC+C+ G +LPC H F + C+D+W + + CP+CR M
Sbjct: 16 EECCICM----DGRADLILPCAHSFCQKCIDKWSDRH-RNCPICRLQM 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
E C +CL + LPCLH F C+ RW + TCPLC+ +
Sbjct: 5 AERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 52 SCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTK--TCPLC 94
SC VCL LK E ++ C H F +AC+ RW+ + + CP+C
Sbjct: 17 SCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 71 CLHRFHRACVDRWFNEWTKTCPLCRFSMGEE--MKLHAGLGEVLT 113
C H + C+DR F +CP CR+ +G M+++ L VL
Sbjct: 70 CQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLN 114
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +CL LK + M CLHRF C+ K CP CR
Sbjct: 57 CPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCR 97
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +CL LK + M CLHRF C+ K CP CR
Sbjct: 56 CPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCR 96
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 36 DVVLNRLKEANEF----EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTC 91
D VL+ L E F E CVC L + C H + C+ R F +C
Sbjct: 59 DEVLSHLVEGPNFLKKLEQSFMCVCCQELVY--QPVTTECFHNVCKDCLQRSFKAQVFSC 116
Query: 92 PLCRFSMGEEMKLHAGLGEVLTDEMVIWFSSF 123
P CR +G+ + E+L + ++F +
Sbjct: 117 PACRHDLGQNYIMIP--NEILQTLLDLFFPGY 146
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +CL LK + M CLHRF C+ K CP CR
Sbjct: 37 CPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCR 77
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 51 ESCCVCLSRLKQGDEM-RVLPCLHRFHRACVDRWFNEWTKTCPLCRFS 97
++C +CL + + VLPC H HR C + E + CPLC S
Sbjct: 6 QNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLCMHS 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 64 DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKL 104
D ++ CLH F + C+ R+ E +K CP+C + + L
Sbjct: 27 DATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKTRPL 66
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 64 DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKL 104
D ++ CLH F + C+ R+ E +K CP+C + + L
Sbjct: 27 DATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKTRPL 66
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 64 DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKL 104
D ++ CLH F + C+ R+ E +K CP+C + + L
Sbjct: 23 DATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKTRPL 62
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 67 RVLPCLHRFHRACVDRWFNEWTKTCPLC 94
VLPC H HR C + E + CPLC
Sbjct: 23 HVLPCGHLLHRTCYEEMLKEGYR-CPLC 49
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +C K ++++ PC H +C+ W + CP CR
Sbjct: 335 CKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +C K ++++ PC H +C+ W + CP CR
Sbjct: 337 CKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +C K ++++ PC H +C+ W + CP CR
Sbjct: 337 CKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +C K ++++ PC H +C+ W + CP CR
Sbjct: 335 CKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPL 93
C +CL L++ + PC HRF +AC+ + + CP+
Sbjct: 28 CPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
C +C K ++++ PC H +C+ W + CP CR
Sbjct: 341 CKICAENDK---DVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPL 93
C +CL L++ + PC HRF +AC+ + + CP+
Sbjct: 9 CPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 73 HRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLHAGLGE--VLTDEMVIW 119
+ R+ + +W + KTCP +E LHAGL VL + +W
Sbjct: 28 QTYERSSIQKWLDAGHKTCP-----KSQETLLHAGLTPNYVLKSLIALW 71
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 62 QGDEMRVL--PC-----LHRFHRACVDRWFNEW-TKTCPLCRFSMGEEMKL 104
+GD+ L PC LH H+AC+ +W T+ C LC++ E KL
Sbjct: 24 EGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 52 SCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPL 93
C +CL L++ + PC HRF +AC+ + + CP+
Sbjct: 20 ECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 64 DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKL 104
D + CLH F ++C+ R F ++ CP C + + L
Sbjct: 27 DATTITECLHTFCKSCIVRHF-YYSNRCPKCNIVVHQTQPL 66
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 52 SCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPL 93
C +CL L++ + PC HRF +AC+ + + CP+
Sbjct: 20 ECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 65 EMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++++ PC H +C+ W + CP CR
Sbjct: 39 DVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 65 EMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++++ PC H +C+ W + CP CR
Sbjct: 36 DVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 65 EMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++++ PC H +C+ W + CP CR
Sbjct: 38 DVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 51 ESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCR 95
++C C + KQ D + V C H FH C+ W + CPLC+
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQ 71
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 68 VLPCLHRFHRACVDRWFNEWTKTCPLCR 95
L C H F C++ W + CP+CR
Sbjct: 68 TLNCAHSFCSYCINEWMKRKIE-CPICR 94
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 68 VLPCLHRFHRACVDRWFNEWTKTCPLCR 95
L C H F C++ W + CP+CR
Sbjct: 68 TLNCAHSFCSYCINEWMKRKIE-CPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 65 EMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
E L C H F C++ W + CP+CR
Sbjct: 76 EAVTLNCAHSFCSYCINEWMKRKIE-CPICR 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.139 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,580,404
Number of Sequences: 62578
Number of extensions: 129601
Number of successful extensions: 304
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 48
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)