BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048466
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLHAGLG 109
C +CL +G E+RV+ CLH FHR CVD W ++ +TCPLC F++ E LG
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQ-HRTCPLCMFNITEGDSFSQSLG 327
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 17 RGQLRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFH 76
R Q RL + A + + + V KE + + + C VC+ KQ D +RVLPC H FH
Sbjct: 229 RNQRRLGDAAKKAISKLTTRTVKKGDKETDP-DFDHCAVCIESYKQNDVVRVLPCKHVFH 287
Query: 77 RACVDRWFNEWTKTCPLCRFSM 98
++CVD W +E TCP+C+ ++
Sbjct: 288 KSCVDPWLSEHC-TCPMCKLNI 308
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 17 RGQLRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFH 76
R Q RL + A + + + V KE + + + C VC+ KQ D +RVLPC H FH
Sbjct: 229 RNQRRLGDAAKKAISKLTTRTVKKGDKETDP-DFDHCAVCIESYKQNDVVRVLPCKHVFH 287
Query: 77 RACVDRWFNEWTKTCPLCRFSM 98
++CVD W +E TCP+C+ ++
Sbjct: 288 KSCVDPWLSEHC-TCPMCKLNI 308
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 17 RGQLRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFH 76
R Q RL + A + + + V KE + + + C VC+ KQ D +R+LPC H FH
Sbjct: 229 RNQRRLGDAAKKAISKLTTRTVKKGDKETDP-DFDHCAVCIESYKQNDVVRILPCKHVFH 287
Query: 77 RACVDRWFNEWTKTCPLCRFSM 98
++CVD W +E TCP+C+ ++
Sbjct: 288 KSCVDPWLSEHC-TCPMCKLNI 308
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100
C +CL +G E+RV+ CLH FHR CVD W + +TCPLC F++ E
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQ-HRTCPLCMFNIVE 318
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLHAGLGEV 111
C +CL + G+E+RV+PC HRFH+ CVD W + TCP CR ++ E+ K G G V
Sbjct: 202 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQ-NHTCPHCRHNIIEQKKGGHGPGCV 259
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMK 103
C +CL + G+E+RV+PC HRFH+ CVD W + TCP CR ++ E+ K
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQ-NHTCPHCRHNIIEQKK 315
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101
C +CL + G+E+RV+PC HRFHR CVD W + TCP CR ++ E+
Sbjct: 290 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQ-HHTCPHCRHNIIEQ 337
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 35 SDVVLNRLKEAN---EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTC 91
S + L+R+K+ + + E+C VC+ K D +R+LPC H FHR C+D W E +TC
Sbjct: 243 SQLQLHRVKKGEKGIDIDAENCAVCIENYKTKDLVRILPCKHIFHRLCIDPWLIE-HRTC 301
Query: 92 PLCRFSM 98
P+C+ +
Sbjct: 302 PMCKLDV 308
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101
C +CL + G+E+RV+PC HRFHR CVD W + TCP CR ++ E+
Sbjct: 293 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQ-HHTCPHCRHNIIEQ 340
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 20/116 (17%)
Query: 1 MVLSKLATFLCDSIILRGQLRLRNKASPSYEV--------------IASDVVLNRLKE-- 44
M+LS LA F+ + + LRL +K++P+ V +A + LNRL
Sbjct: 18 MLLSLLAVFI--NHLRSFLLRLTSKSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYR 75
Query: 45 --ANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
G C VCLS+LK+G+E+R L C H FH+ C++ W +++ TCPLCR ++
Sbjct: 76 CGDGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSAL 131
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
G+ C VC+S G+++R LPCLH FH C+DRW +E TCP+CR
Sbjct: 611 GKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSE-NCTCPVCR 655
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 39 LNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
+++ K+ +E++ C +CL + GD++R+LPC H +H CVD W + KTCP+C+
Sbjct: 228 VHKFKKGDEYD--VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 39 LNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
+++ K+ +E++ C +CL + GD++R+LPC H +H CVD W + KTCP+C+
Sbjct: 228 VHKFKKGDEYD--VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 39 LNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
+++ K+ +E++ C +CL + GD++R+LPC H +H CVD W + KTCP+C+
Sbjct: 228 VHKFKKGDEYD--VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 39 LNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
+++ K+ +E++ C +CL + GD++R+LPC H +H CVD W + KTCP+C+
Sbjct: 228 VHKFKKGDEYD--VCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 39 LNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
+++ K+ +E++ C +CL + GD++R+LPC H +H CVD W + KTCP+C+
Sbjct: 228 VHKFKKGDEYD--VCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 39 LNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
+++ K+ +E++ C +CL + GD++R+LPC H +H CVD W + KTCP+C+
Sbjct: 228 VHKFKKGDEYD--VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLHAGLGE 110
+ C +CL + GD++RVLPC H +H CVD W + KTCP+C+ +H G G+
Sbjct: 228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK------QPVHRGPGD 281
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 902 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIDTQL 950
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 915 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIDTQL 963
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 907 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIDTQL 955
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 871 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIDTQL 919
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
G+ C VC+S G+++R LPC+H FH C+DRW +E TCP+CR
Sbjct: 629 GKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSE-NCTCPICR 673
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
E + C +CL + GD++RVLPC H +H CVD W + KTCP+C+
Sbjct: 226 EYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 934 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQL 982
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 937 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQL 985
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
C +CLS L++G+++R LPC+H FH+ CVD+W K CP+CR + ++
Sbjct: 942 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQL 990
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 53 CCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLHAG 107
C +CL + G+E+RV+PC HRFH+ CVD W + TCP CR ++ ++ K + G
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQ-HHTCPHCRHNIIDQKKGNPG 320
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
E + C +CL + GD++R+LPC H +H CVD W + KTCP+C+
Sbjct: 226 EYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++C VC++ +G+++R LPC H +H C+DRW +E TCP+CR
Sbjct: 583 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICR 626
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++C VC++ +G+++R LPC H +H C+DRW +E TCP+CR
Sbjct: 568 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICR 611
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 21 RLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACV 80
+LRN+A S +VVL + + G++C VCL K DE+ VLPC H FHR C+
Sbjct: 62 KLRNQAQ-SERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL 120
Query: 81 DRWFNEWTKTCPLCRFSMGEEMKLHAGLGEVLTDEMV 117
+W E CP+C + + +G +L DE+V
Sbjct: 121 VKWL-EVRCVCPMCNKPIAGPTETSQSIG-ILLDELV 155
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++C VC++ +G+++R LPC H +H C+DRW +E TCP+CR
Sbjct: 544 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICR 587
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 1 MVLSKLATFL--CDSIILRGQLRLRNKASPSYEVIASDVVLNRL--KEANEFEGESCCVC 56
M+L+ LATF S++L + + V+A + LNRL ++ C VC
Sbjct: 18 MLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVC 77
Query: 57 LSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
LS+LK G+E+R L C H FH+ C++ W CPLCR
Sbjct: 78 LSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR 116
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++C VC++ +G+++R LPC H +H C+DRW +E TCP+CR
Sbjct: 701 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICR 744
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCR 95
++C VC++ +G+++R LPC H +H C+DRW +E TCP+CR
Sbjct: 566 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICR 609
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 21 RLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACV 80
+LRN+A S +VVL + + G++C VCL K DE+ VLPC H FHR C+
Sbjct: 62 KLRNQAQ-SERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL 120
Query: 81 DRWFNEWTKTCPLCRFSMGEEMKLHAGLGEVLTDEMV 117
+W E CP+C + + +G +L DE+V
Sbjct: 121 VKWL-EVRCVCPMCNKPIASPSEATQNIG-ILLDELV 155
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 49 EGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNEWTKTCPLCRFSMGE-EMKLHA 106
+G C VCLS L GD+ RVLP C H FH C+D WF + TCPLCR ++G E H
Sbjct: 116 DGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHS-TCPLCRNTVGSVEDTTHG 174
Query: 107 G 107
G
Sbjct: 175 G 175
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 14 IILRGQLRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLP-CL 72
I + GQ L N S+E+ + +V R + G C +CLS L +GD+ R+LP C
Sbjct: 90 IFVPGQDALSNTGLTSFELSSLPIVFFRQDSCKD--GLECSICLSELVKGDKARLLPKCN 147
Query: 73 HRFHRACVDRWFNEWTKTCPLCR 95
H FH C+D WF + TCP+CR
Sbjct: 148 HSFHVECIDMWFQSHS-TCPICR 169
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 17 RGQLRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFH 76
R Q RL + A + + + KE E + ++C VC+ K D +R+LPC H FH
Sbjct: 242 RNQRRLGDAAKKAISKLQVRTIRKGDKET-ESDFDNCAVCIEGYKPNDVVRILPCRHLFH 300
Query: 77 RACVDRWFNEWTKTCPLCRFSM 98
++CVD W + +TCP+C+ ++
Sbjct: 301 KSCVDPWLLD-HRTCPMCKMNI 321
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 20 LRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRAC 79
+RLR++A + ++ ++KE N E C VCL K DE+ + PC H FHR C
Sbjct: 47 IRLRHQAHKEFYAYKQVILKEKVKELNL--HELCAVCLEDFKPRDELGICPCKHAFHRKC 104
Query: 80 VDRWFNEWTKTCPLCRFSMGEEMKLHA 106
+ +W E K CPLC + + +LH+
Sbjct: 105 LIKWL-EVRKVCPLCNMPVLQLAQLHS 130
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
+ + E+C VC+ K D +R+LPC H FHR C+D W + +TCP+C+ +
Sbjct: 259 DVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLD-HRTCPMCKLDV 309
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 20 LRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRAC 79
+RLR++A + ++ ++KE N E C VCL K DE+ + PC H FHR C
Sbjct: 47 IRLRHQAHKEFYAYKQVILKEKVKELNL--HELCAVCLEDFKPRDELGICPCKHAFHRKC 104
Query: 80 VDRWFNEWTKTCPLCRFSMGEEMKLHA 106
+ +W E K CPLC + + +LH+
Sbjct: 105 LVKWL-EVRKVCPLCNMPVLQLAQLHS 130
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 17 RGQLRLRNKASPSYEVIASDVVLNRLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFH 76
R Q RL + A + + + KE E + ++C VC+ K D +R+LPC H FH
Sbjct: 243 RNQRRLGDAAKKAISKLQIRTIKKGDKET-ESDFDNCAVCIEGYKPNDVVRILPCRHLFH 301
Query: 77 RACVDRWFNEWTKTCPLCRFSM 98
++CVD W + +TCP+C+ ++
Sbjct: 302 KSCVDPWLLD-HRTCPMCKMNI 322
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 41 RLKEANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
+ + + + + C +C+ K D +R+LPC H FH+ C+D W E +TCP+C+ +
Sbjct: 291 KFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIE-HRTCPMCKLDV 347
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
+ + E+C VC+ K D +R+LPC H FHR C+D W + +TCP+C+ +
Sbjct: 263 DVDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLD-HRTCPMCKLDV 313
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSM 98
E CC+CLS + G E+R LPC H FH +CVD+W TCPLC++++
Sbjct: 349 EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLY-INATCPLCKYNI 397
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
E C +CLS L+ G+++R LPC+H FH+ CVD+W +K CP+CR + ++
Sbjct: 293 EKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWL-AMSKKCPICRVDIETQL 343
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102
E C +CLS L+ G+++R LPC+H FH+ CVD+W +K CP+CR + ++
Sbjct: 292 EKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWL-AMSKKCPICRVDIETQL 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,131,949
Number of Sequences: 539616
Number of extensions: 1659774
Number of successful extensions: 5236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 4821
Number of HSP's gapped (non-prelim): 614
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)