Query 048466
Match_columns 128
No_of_seqs 146 out of 1377
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.6 2.1E-16 7E-21 92.7 5.5 57 45-102 9-65 (69)
2 2ep4_A Ring finger protein 24; 99.6 2.8E-16 9.6E-21 93.3 5.4 58 46-104 11-68 (74)
3 1x4j_A Ring finger protein 38; 99.6 2.1E-16 7E-21 94.3 4.1 55 46-101 19-73 (75)
4 2ect_A Ring finger protein 126 99.6 2.6E-16 8.8E-21 94.4 4.3 60 45-105 10-69 (78)
5 2l0b_A E3 ubiquitin-protein li 99.6 1.8E-16 6.1E-21 98.0 3.0 54 47-101 37-90 (91)
6 1iym_A EL5; ring-H2 finger, ub 99.6 3.4E-16 1.2E-20 87.8 3.6 51 48-99 3-54 (55)
7 1v87_A Deltex protein 2; ring- 99.6 1.9E-15 6.4E-20 96.7 7.1 59 43-101 18-95 (114)
8 2ecl_A Ring-box protein 2; RNF 99.5 6.3E-15 2.1E-19 89.2 5.1 54 47-101 12-77 (81)
9 3ng2_A RNF4, snurf, ring finge 99.5 4.4E-15 1.5E-19 87.2 3.6 56 46-102 6-65 (71)
10 2ecm_A Ring finger and CHY zin 99.5 7.8E-15 2.7E-19 82.1 4.4 51 48-99 3-54 (55)
11 2djb_A Polycomb group ring fin 99.5 1E-14 3.5E-19 86.2 4.8 57 45-105 10-67 (72)
12 2ea6_A Ring finger protein 4; 99.5 8.9E-15 3E-19 85.3 3.6 54 46-100 11-68 (69)
13 3dpl_R Ring-box protein 1; ubi 99.5 2.4E-14 8.2E-19 90.8 5.5 54 47-101 34-102 (106)
14 2d8t_A Dactylidin, ring finger 99.5 9.4E-15 3.2E-19 86.1 2.9 53 46-102 11-63 (71)
15 1chc_A Equine herpes virus-1 r 99.5 2.4E-14 8.1E-19 83.5 4.4 52 48-102 3-54 (68)
16 2xeu_A Ring finger protein 4; 99.5 1.6E-14 5.5E-19 83.1 3.5 53 49-102 2-58 (64)
17 2ecy_A TNF receptor-associated 99.5 2.6E-14 8.9E-19 83.0 4.0 53 46-101 11-63 (66)
18 1t1h_A Gspef-atpub14, armadill 99.5 2.4E-14 8.3E-19 85.7 3.4 54 46-102 4-57 (78)
19 2csy_A Zinc finger protein 183 99.5 4.7E-14 1.6E-18 85.1 4.1 50 46-99 11-60 (81)
20 2ecn_A Ring finger protein 141 99.5 2.9E-14 9.9E-19 83.6 2.9 52 46-102 11-62 (70)
21 3lrq_A E3 ubiquitin-protein li 99.5 7.3E-15 2.5E-19 92.2 0.3 54 46-102 18-72 (100)
22 2ecw_A Tripartite motif-contai 99.4 1.7E-13 5.9E-18 82.8 6.2 54 46-102 15-73 (85)
23 2ysl_A Tripartite motif-contai 99.4 8E-14 2.7E-18 82.3 4.3 53 46-101 16-70 (73)
24 2yur_A Retinoblastoma-binding 99.4 5.7E-14 2E-18 83.4 3.7 54 45-101 10-65 (74)
25 2ct2_A Tripartite motif protei 99.4 1.5E-13 5E-18 83.8 5.6 57 45-101 10-69 (88)
26 2egp_A Tripartite motif-contai 99.4 3.7E-14 1.3E-18 84.9 2.5 54 46-102 8-67 (79)
27 4ayc_A E3 ubiquitin-protein li 99.4 6.7E-14 2.3E-18 92.5 3.5 50 49-102 52-101 (138)
28 2d8s_A Cellular modulator of i 99.4 1.7E-13 5.8E-18 82.7 4.8 58 46-104 11-74 (80)
29 2ecv_A Tripartite motif-contai 99.4 2.3E-13 7.7E-18 82.2 5.0 54 46-102 15-73 (85)
30 1g25_A CDK-activating kinase a 99.4 2.3E-13 7.7E-18 78.7 4.5 54 49-102 2-57 (65)
31 2ckl_A Polycomb group ring fin 99.4 1.4E-13 4.6E-18 87.4 2.6 50 48-101 13-63 (108)
32 4a0k_B E3 ubiquitin-protein li 99.4 5.1E-14 1.8E-18 90.7 0.5 55 45-100 43-112 (117)
33 2ysj_A Tripartite motif-contai 99.4 5.4E-13 1.8E-17 76.6 4.7 46 46-94 16-63 (63)
34 3hct_A TNF receptor-associated 99.4 1.8E-13 6.3E-18 88.1 2.7 54 46-102 14-67 (118)
35 3ztg_A E3 ubiquitin-protein li 99.4 5.3E-13 1.8E-17 82.1 4.3 51 46-99 9-61 (92)
36 3fl2_A E3 ubiquitin-protein li 99.3 5.8E-13 2E-17 86.4 4.1 49 49-100 51-99 (124)
37 4ap4_A E3 ubiquitin ligase RNF 99.3 7E-13 2.4E-17 86.2 4.5 55 48-103 5-63 (133)
38 1e4u_A Transcriptional repress 99.3 1.3E-12 4.4E-17 78.5 5.0 57 46-103 7-65 (78)
39 2y43_A E3 ubiquitin-protein li 99.3 8.8E-13 3E-17 82.3 4.3 49 49-101 21-70 (99)
40 2ecj_A Tripartite motif-contai 99.3 9.2E-13 3.1E-17 74.2 3.7 46 46-94 11-58 (58)
41 2ct0_A Non-SMC element 1 homol 99.3 1.6E-12 5.6E-17 77.1 4.1 54 48-103 13-67 (74)
42 1jm7_A BRCA1, breast cancer ty 99.3 8.1E-13 2.8E-17 83.9 2.7 53 49-104 20-74 (112)
43 2ckl_B Ubiquitin ligase protei 99.3 9.7E-13 3.3E-17 89.2 3.2 50 49-101 53-103 (165)
44 1z6u_A NP95-like ring finger p 99.3 7.3E-13 2.5E-17 88.8 2.4 50 49-101 77-126 (150)
45 3l11_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 86.2 0.1 50 48-100 13-62 (115)
46 1rmd_A RAG1; V(D)J recombinati 99.3 3.4E-12 1.2E-16 81.7 4.1 50 50-102 23-72 (116)
47 3knv_A TNF receptor-associated 99.2 3E-12 1E-16 85.0 3.2 53 45-100 26-78 (141)
48 4ap4_A E3 ubiquitin ligase RNF 99.2 7.5E-12 2.6E-16 81.3 4.2 55 47-102 69-127 (133)
49 2kr4_A Ubiquitin conjugation f 99.2 1.3E-11 4.5E-16 75.1 4.7 51 47-101 11-61 (85)
50 3hcs_A TNF receptor-associated 99.2 6.5E-12 2.2E-16 85.4 2.7 54 46-102 14-67 (170)
51 1bor_A Transcription factor PM 99.2 3.7E-12 1.3E-16 71.6 1.2 49 47-102 3-51 (56)
52 2kre_A Ubiquitin conjugation f 99.2 1.8E-11 6.1E-16 76.7 4.3 52 46-101 25-76 (100)
53 1wgm_A Ubiquitin conjugation f 99.2 2.8E-11 9.4E-16 75.6 4.5 53 46-102 18-71 (98)
54 2vje_B MDM4 protein; proto-onc 99.2 1.3E-11 4.6E-16 71.0 2.6 51 47-101 4-57 (63)
55 2vje_A E3 ubiquitin-protein li 99.2 1.4E-11 4.9E-16 71.1 2.7 50 48-101 6-58 (64)
56 2y1n_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 91.6 4.6 51 49-102 331-381 (389)
57 4ic3_A E3 ubiquitin-protein li 99.1 6.1E-12 2.1E-16 74.7 -0.7 46 49-102 23-69 (74)
58 2c2l_A CHIP, carboxy terminus 99.1 6.9E-11 2.4E-15 85.4 4.3 53 47-102 205-257 (281)
59 1jm7_B BARD1, BRCA1-associated 99.1 1.8E-11 6.1E-16 78.6 0.9 47 48-100 20-67 (117)
60 2yu4_A E3 SUMO-protein ligase 99.1 1.9E-10 6.5E-15 71.2 4.7 52 47-101 4-64 (94)
61 2f42_A STIP1 homology and U-bo 99.0 3.7E-10 1.3E-14 77.5 5.5 56 44-102 100-155 (179)
62 2ea5_A Cell growth regulator w 98.9 5.5E-10 1.9E-14 65.2 3.4 53 45-105 10-63 (68)
63 2ecg_A Baculoviral IAP repeat- 98.9 1.7E-10 5.7E-15 68.5 1.1 46 49-102 24-70 (75)
64 3k1l_B Fancl; UBC, ring, RWD, 98.9 1.8E-10 6.1E-15 85.9 1.4 57 46-102 304-375 (381)
65 2yho_A E3 ubiquitin-protein li 98.9 1E-10 3.4E-15 70.3 -0.0 54 50-111 18-72 (79)
66 1wim_A KIAA0161 protein; ring 98.9 5.8E-10 2E-14 68.8 2.5 53 49-101 4-67 (94)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1.8E-09 6.1E-14 61.5 4.0 51 47-100 3-59 (60)
68 3htk_C E3 SUMO-protein ligase 98.7 6E-09 2E-13 75.1 4.1 53 47-101 178-233 (267)
69 3t6p_A Baculoviral IAP repeat- 98.6 4.9E-09 1.7E-13 78.7 1.2 47 48-102 293-340 (345)
70 2bay_A PRE-mRNA splicing facto 98.6 1.8E-08 6.3E-13 57.4 3.4 50 50-103 3-53 (61)
71 3vk6_A E3 ubiquitin-protein li 98.5 8.2E-08 2.8E-12 59.4 4.0 51 52-104 3-53 (101)
72 3nw0_A Non-structural maintena 98.2 2.6E-06 8.9E-11 60.8 5.8 51 49-102 179-231 (238)
73 2ko5_A Ring finger protein Z; 97.0 0.00055 1.9E-08 41.7 2.9 56 44-105 22-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.8 0.0063 2.2E-07 37.1 3.0 35 49-83 2-36 (101)
75 2lri_C Autoimmune regulator; Z 95.0 0.02 7E-07 32.5 3.0 50 45-98 7-60 (66)
76 1weo_A Cellulose synthase, cat 93.9 0.21 7E-06 30.0 5.7 52 49-100 15-70 (93)
77 2l5u_A Chromodomain-helicase-D 90.9 0.16 5.6E-06 28.1 2.4 47 46-96 7-57 (61)
78 3m62_A Ubiquitin conjugation f 90.5 0.41 1.4E-05 40.3 5.4 54 45-102 886-940 (968)
79 1fp0_A KAP-1 corepressor; PHD 89.8 0.16 5.4E-06 30.5 1.8 52 46-101 21-76 (88)
80 2k16_A Transcription initiatio 89.4 0.095 3.2E-06 30.2 0.6 54 46-100 14-71 (75)
81 3u5n_A E3 ubiquitin-protein li 88.1 0.097 3.3E-06 36.1 0.0 49 46-98 3-55 (207)
82 1we9_A PHD finger family prote 86.1 0.49 1.7E-05 26.2 2.3 50 47-96 3-57 (64)
83 1f62_A Transcription factor WS 85.9 0.37 1.3E-05 25.4 1.6 44 52-96 2-49 (51)
84 1wil_A KIAA1045 protein; ring 85.8 0.61 2.1E-05 27.7 2.6 34 46-83 11-47 (89)
85 2yt5_A Metal-response element- 85.6 0.17 5.9E-06 28.3 0.2 52 47-98 3-62 (66)
86 2lbm_A Transcriptional regulat 85.4 1.3 4.4E-05 28.9 4.3 48 45-96 58-116 (142)
87 2cs3_A Protein C14ORF4, MY039 85.3 1.5 5.2E-05 25.8 4.1 38 48-86 13-52 (93)
88 3o36_A Transcription intermedi 85.1 0.17 5.7E-06 34.2 -0.0 46 49-98 3-52 (184)
89 3v43_A Histone acetyltransfera 84.8 1.2 4.2E-05 27.5 3.9 33 49-81 4-42 (112)
90 1mm2_A MI2-beta; PHD, zinc fin 83.8 0.16 5.6E-06 28.1 -0.4 48 46-97 5-56 (61)
91 2vpb_A Hpygo1, pygopus homolog 83.6 1.1 3.9E-05 25.0 3.1 35 47-81 5-41 (65)
92 2ysm_A Myeloid/lymphoid or mix 83.5 0.31 1.1E-05 30.1 0.7 40 46-85 3-42 (111)
93 2ri7_A Nucleosome-remodeling f 83.2 0.88 3E-05 30.2 2.9 50 47-97 5-59 (174)
94 2puy_A PHD finger protein 21A; 83.1 0.11 3.8E-06 28.6 -1.4 48 48-99 3-54 (60)
95 1wep_A PHF8; structural genomi 80.3 1.9 6.5E-05 24.8 3.3 50 48-98 10-64 (79)
96 2yql_A PHD finger protein 21A; 79.5 0.19 6.3E-06 27.3 -1.3 46 47-96 6-55 (56)
97 3ql9_A Transcriptional regulat 78.5 3.4 0.00012 26.4 4.3 48 45-96 52-110 (129)
98 2e6r_A Jumonji/ARID domain-con 78.1 0.15 5.1E-06 30.7 -2.1 50 47-97 13-66 (92)
99 1xwh_A Autoimmune regulator; P 78.1 0.39 1.3E-05 26.9 -0.2 47 47-97 5-55 (66)
100 3v43_A Histone acetyltransfera 78.0 0.6 2.1E-05 28.9 0.6 45 52-96 63-111 (112)
101 2d8v_A Zinc finger FYVE domain 77.8 1.5 5.1E-05 24.7 2.1 34 46-83 4-38 (67)
102 2yw8_A RUN and FYVE domain-con 77.4 1.7 5.7E-05 25.3 2.4 39 44-82 13-52 (82)
103 1z60_A TFIIH basal transcripti 77.1 0.82 2.8E-05 25.2 0.9 43 51-94 16-58 (59)
104 2lv9_A Histone-lysine N-methyl 76.4 0.61 2.1E-05 28.3 0.3 45 50-96 28-75 (98)
105 1wem_A Death associated transc 75.8 0.79 2.7E-05 26.3 0.7 47 50-98 16-71 (76)
106 2ku3_A Bromodomain-containing 75.7 3.9 0.00013 23.2 3.6 52 45-96 11-65 (71)
107 2kwj_A Zinc finger protein DPF 75.3 1 3.5E-05 28.0 1.1 33 51-83 2-41 (114)
108 3pg6_A E3 ubiquitin-protein li 75.0 1.6 5.5E-05 28.8 2.1 35 88-128 12-46 (159)
109 1wev_A Riken cDNA 1110020M19; 74.9 0.59 2E-05 27.8 -0.1 54 49-102 15-77 (88)
110 2kgg_A Histone demethylase jar 74.3 2.4 8.2E-05 22.4 2.3 44 52-95 4-52 (52)
111 4gne_A Histone-lysine N-methyl 74.0 3.3 0.00011 25.5 3.2 51 44-100 9-65 (107)
112 4fo9_A E3 SUMO-protein ligase 73.9 4.3 0.00015 30.4 4.4 49 51-101 216-267 (360)
113 3lqh_A Histone-lysine N-methyl 71.4 2.8 9.6E-05 28.3 2.7 51 50-100 2-66 (183)
114 1z2q_A LM5-1; membrane protein 71.4 3.5 0.00012 24.0 2.8 38 45-82 16-54 (84)
115 2l43_A N-teminal domain from h 71.2 3.5 0.00012 24.4 2.8 56 45-100 20-78 (88)
116 2cor_A Pinch protein; LIM doma 70.4 1.8 6.1E-05 24.7 1.4 45 45-101 10-54 (79)
117 3i2d_A E3 SUMO-protein ligase 70.2 5.7 0.0002 29.9 4.3 49 51-101 250-301 (371)
118 3mjh_B Early endosome antigen 69.8 1.1 3.8E-05 21.8 0.3 13 50-62 5-17 (34)
119 1joc_A EEA1, early endosomal a 69.6 3.1 0.0001 26.3 2.4 37 45-81 64-101 (125)
120 2ro1_A Transcription intermedi 69.4 0.73 2.5E-05 31.3 -0.6 46 50-98 2-50 (189)
121 3ask_A E3 ubiquitin-protein li 68.0 1 3.5E-05 31.6 -0.1 44 52-96 176-224 (226)
122 1x4u_A Zinc finger, FYVE domai 67.9 3.9 0.00013 23.8 2.5 36 46-81 10-46 (84)
123 2xb1_A Pygopus homolog 2, B-ce 67.9 3.6 0.00012 25.2 2.4 50 50-99 3-63 (105)
124 2dar_A PDZ and LIM domain prot 67.3 3.4 0.00012 24.0 2.2 42 47-100 22-63 (90)
125 3t7l_A Zinc finger FYVE domain 67.1 3.9 0.00013 24.2 2.4 51 48-98 18-74 (90)
126 1zbd_B Rabphilin-3A; G protein 65.8 5.2 0.00018 25.6 2.9 51 47-97 52-107 (134)
127 2d8z_A Four and A half LIM dom 65.7 5.2 0.00018 21.8 2.7 39 50-100 5-43 (70)
128 1wfk_A Zinc finger, FYVE domai 65.6 5 0.00017 23.7 2.6 55 47-101 6-67 (88)
129 1x62_A C-terminal LIM domain p 64.9 3.9 0.00013 23.1 2.1 41 48-100 13-53 (79)
130 1vfy_A Phosphatidylinositol-3- 64.7 5.9 0.0002 22.4 2.8 31 51-81 12-43 (73)
131 1y02_A CARP2, FYVE-ring finger 64.1 1 3.4E-05 28.5 -0.7 49 48-97 17-66 (120)
132 2e6s_A E3 ubiquitin-protein li 63.8 1.2 4E-05 25.9 -0.4 44 52-96 28-76 (77)
133 1nyp_A Pinch protein; LIM doma 62.9 5.2 0.00018 21.6 2.3 39 50-100 5-43 (66)
134 3shb_A E3 ubiquitin-protein li 62.8 0.71 2.4E-05 26.8 -1.5 27 70-96 46-76 (77)
135 1wyh_A SLIM 2, skeletal muscle 62.0 6.5 0.00022 21.5 2.6 42 50-101 5-46 (72)
136 1iml_A CRIP, cysteine rich int 61.9 2.1 7.3E-05 24.0 0.5 10 52-61 29-38 (76)
137 1dvp_A HRS, hepatocyte growth 61.0 4.2 0.00014 28.0 2.0 33 49-81 160-193 (220)
138 1x64_A Alpha-actinin-2 associa 60.7 6.1 0.00021 22.8 2.4 42 48-101 23-64 (89)
139 3fyb_A Protein of unknown func 60.5 3.8 0.00013 24.9 1.4 12 75-86 42-53 (104)
140 2o35_A Hypothetical protein DU 60.4 3.8 0.00013 25.0 1.4 12 75-86 43-54 (105)
141 1weu_A Inhibitor of growth fam 60.3 1.8 6.1E-05 26.0 -0.1 48 46-97 32-85 (91)
142 2dj7_A Actin-binding LIM prote 59.7 5.3 0.00018 22.7 2.0 41 48-99 13-53 (80)
143 2cu8_A Cysteine-rich protein 2 59.5 4.2 0.00014 22.7 1.5 41 50-101 9-49 (76)
144 2d8x_A Protein pinch; LIM doma 59.4 4.8 0.00016 22.0 1.7 40 50-101 5-44 (70)
145 1wen_A Inhibitor of growth fam 58.8 4.7 0.00016 22.8 1.6 48 46-98 12-66 (71)
146 3asl_A E3 ubiquitin-protein li 58.7 1.3 4.5E-05 25.1 -0.8 44 52-96 20-68 (70)
147 1g47_A Pinch protein; LIM doma 58.7 6.8 0.00023 21.7 2.3 45 47-101 8-52 (77)
148 3zyq_A Hepatocyte growth facto 57.3 5.2 0.00018 27.7 1.9 34 49-82 163-197 (226)
149 2cur_A Skeletal muscle LIM-pro 56.1 5.5 0.00019 21.7 1.6 38 50-99 5-42 (69)
150 1x4l_A Skeletal muscle LIM-pro 54.9 8.7 0.0003 21.0 2.3 41 50-100 5-47 (72)
151 1x68_A FHL5 protein; four-and- 54.7 6.5 0.00022 21.9 1.8 40 50-99 5-46 (76)
152 2co8_A NEDD9 interacting prote 54.7 7.6 0.00026 22.1 2.1 42 49-101 14-55 (82)
153 2jne_A Hypothetical protein YF 52.7 5.2 0.00018 24.3 1.1 44 49-101 31-74 (101)
154 1wig_A KIAA1808 protein; LIM d 52.2 6.2 0.00021 21.9 1.4 38 50-99 5-42 (73)
155 2gmg_A Hypothetical protein PF 52.2 2.8 9.6E-05 25.8 -0.1 30 67-102 69-98 (105)
156 1wd2_A Ariadne-1 protein homol 52.1 3.6 0.00012 22.5 0.3 19 84-102 2-20 (60)
157 2jvx_A NF-kappa-B essential mo 51.3 4.1 0.00014 18.9 0.4 14 88-101 3-16 (28)
158 3mpx_A FYVE, rhogef and PH dom 51.1 3.2 0.00011 31.2 0.0 50 48-97 373-429 (434)
159 3f6q_B LIM and senescent cell 50.3 10 0.00034 20.5 2.1 43 49-101 10-52 (72)
160 2cuq_A Four and A half LIM dom 50.3 8.9 0.0003 21.4 1.9 38 51-100 16-53 (80)
161 2vnf_A ING 4, P29ING4, inhibit 49.4 2.9 0.0001 22.8 -0.3 45 47-96 7-58 (60)
162 1x63_A Skeletal muscle LIM-pro 49.1 12 0.0004 21.0 2.3 42 50-101 15-56 (82)
163 1x6a_A LIMK-2, LIM domain kina 48.7 7.3 0.00025 21.9 1.3 38 51-100 16-53 (81)
164 1v6g_A Actin binding LIM prote 48.3 7.3 0.00025 22.0 1.3 38 51-100 16-53 (81)
165 2dlo_A Thyroid receptor-intera 47.8 7 0.00024 22.0 1.1 39 50-100 15-53 (81)
166 2d8y_A Eplin protein; LIM doma 47.1 15 0.0005 21.2 2.5 42 49-101 14-55 (91)
167 1x61_A Thyroid receptor intera 45.6 15 0.00051 20.0 2.3 40 50-99 5-44 (72)
168 1x4k_A Skeletal muscle LIM-pro 45.1 11 0.00039 20.4 1.8 42 50-101 5-46 (72)
169 1x3h_A Leupaxin; paxillin fami 45.0 8.1 0.00028 21.6 1.1 39 51-101 16-54 (80)
170 2g6q_A Inhibitor of growth pro 44.0 4.3 0.00015 22.3 -0.2 44 48-96 9-59 (62)
171 3c6w_A P28ING5, inhibitor of g 43.7 4.2 0.00015 22.1 -0.3 44 48-96 7-57 (59)
172 2zet_C Melanophilin; complex, 43.7 21 0.00072 23.3 3.1 50 47-97 65-117 (153)
173 3a1b_A DNA (cytosine-5)-methyl 43.6 26 0.00087 23.1 3.5 38 45-86 74-114 (159)
174 1a7i_A QCRP2 (LIM1); LIM domai 43.4 6.3 0.00022 22.2 0.5 41 50-101 7-47 (81)
175 1wee_A PHD finger family prote 42.7 10 0.00035 21.2 1.3 49 48-97 14-66 (72)
176 2xjy_A Rhombotin-2; oncoprotei 42.3 25 0.00085 21.5 3.2 51 49-100 28-78 (131)
177 2egq_A FHL1 protein; LIM domai 40.4 12 0.00043 20.6 1.4 40 51-100 16-58 (77)
178 1wew_A DNA-binding family prot 40.2 26 0.00089 19.8 2.8 50 48-98 14-73 (78)
179 2a20_A Regulating synaptic mem 39.3 20 0.0007 19.6 2.1 18 46-63 5-23 (62)
180 3o70_A PHD finger protein 13; 39.2 15 0.0005 20.5 1.6 50 45-96 14-66 (68)
181 2l4z_A DNA endonuclease RBBP8, 38.6 13 0.00044 23.1 1.4 40 49-99 60-99 (123)
182 2jrp_A Putative cytoplasmic pr 38.5 14 0.00049 21.5 1.5 13 51-63 3-15 (81)
183 1m3v_A FLIN4, fusion of the LI 35.0 29 0.001 21.1 2.7 50 51-102 33-83 (122)
184 2ehe_A Four and A half LIM dom 34.9 19 0.00064 20.2 1.6 40 51-100 16-55 (82)
185 3vhs_A ATPase wrnip1; zinc fin 34.2 9.7 0.00033 17.2 0.2 12 90-101 8-19 (29)
186 2l3k_A Rhombotin-2, linker, LI 33.8 14 0.00048 22.7 1.0 42 51-96 37-78 (123)
187 2jmo_A Parkin; IBR, E3 ligase, 32.6 2.7 9.2E-05 24.3 -2.4 14 70-83 55-68 (80)
188 2iyb_E Testin, TESS, TES; LIM 32.4 16 0.00056 19.5 1.0 40 51-100 3-44 (65)
189 2xqn_T Testin, TESS; metal-bin 29.7 46 0.0016 20.1 2.9 46 50-100 30-75 (126)
190 1j2o_A FLIN2, fusion of rhombo 29.4 30 0.001 20.8 1.9 34 51-85 31-65 (114)
191 2rgt_A Fusion of LIM/homeobox 28.1 84 0.0029 20.1 4.1 45 50-100 33-77 (169)
192 3kv5_D JMJC domain-containing 27.9 44 0.0015 25.9 3.1 49 49-98 36-89 (488)
193 3o7a_A PHD finger protein 13 v 27.5 9.3 0.00032 19.9 -0.6 41 55-96 8-51 (52)
194 2pv0_B DNA (cytosine-5)-methyl 27.4 53 0.0018 24.8 3.3 38 46-86 89-128 (386)
195 2cup_A Skeletal muscle LIM-pro 26.8 34 0.0012 19.8 1.9 45 51-100 34-78 (101)
196 2lq6_A Bromodomain-containing 25.9 33 0.0011 20.0 1.6 34 48-82 15-50 (87)
197 1l8d_A DNA double-strand break 25.8 16 0.00054 22.1 0.2 13 88-100 47-59 (112)
198 3kv4_A PHD finger protein 8; e 25.6 33 0.0011 26.3 2.0 49 51-99 5-58 (447)
199 3kqi_A GRC5, PHD finger protei 24.6 85 0.0029 17.4 3.2 47 52-98 11-62 (75)
200 1loi_A Cyclic 3',5'-AMP specif 24.0 3.3 0.00011 18.2 -2.3 11 75-85 7-17 (26)
201 1rut_X Flinc4, fusion protein 20.8 43 0.0015 22.0 1.6 27 72-99 54-80 (188)
202 2hf1_A Tetraacyldisaccharide-1 20.8 30 0.001 19.3 0.7 13 89-101 9-21 (68)
203 2jr6_A UPF0434 protein NMA0874 20.7 30 0.001 19.3 0.7 13 89-101 9-21 (68)
204 2jny_A Uncharacterized BCR; st 20.5 30 0.001 19.2 0.7 14 88-101 10-23 (67)
205 1zfo_A LAsp-1; LIM domain, zin 20.3 72 0.0025 14.4 1.9 16 88-103 3-18 (31)
206 3pwf_A Rubrerythrin; non heme 20.3 57 0.002 21.4 2.1 21 69-97 142-162 (170)
207 2i5o_A DNA polymerase ETA; zin 20.2 27 0.00092 17.3 0.3 13 89-101 10-22 (39)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=92.71 Aligned_cols=57 Identities=42% Similarity=1.071 Sum_probs=49.4
Q ss_pred cCCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
........|+||++.+..++.+..++|+|.||..|+..|+.. +.+||+||..+....
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQL 65 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcC
Confidence 345566789999999987777888999999999999999998 778999999887654
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=93.33 Aligned_cols=58 Identities=38% Similarity=0.843 Sum_probs=50.0
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKL 104 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 104 (128)
+...+..|+||++.+..+..+..++|+|.||..|+..|+.. +.+||+||..+......
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccccc
Confidence 44566789999999998888888899999999999999998 67999999988765443
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=94.25 Aligned_cols=55 Identities=40% Similarity=1.003 Sum_probs=48.7
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...++..|+||++.+..++.+..++|+|.||..|+.+|+.. +.+||+||+.+...
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 34566789999999998888888999999999999999998 78999999988764
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=2.6e-16 Score=94.39 Aligned_cols=60 Identities=32% Similarity=0.754 Sum_probs=51.0
Q ss_pred cCCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLH 105 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 105 (128)
........|+||++.+..+..+..++|+|.||..||..|+.. +.+||+||..+.......
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCC
Confidence 344566899999999998877888899999999999999988 789999999998765443
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-16 Score=98.01 Aligned_cols=54 Identities=35% Similarity=0.813 Sum_probs=47.7
Q ss_pred CCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...+..|+||++.+..++.+..++|+|.||..||..|+.. +.+||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCCC
Confidence 4456789999999998888888999999999999999998 78999999988653
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.61 E-value=3.4e-16 Score=87.83 Aligned_cols=51 Identities=49% Similarity=1.128 Sum_probs=45.4
Q ss_pred CCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhcCCccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
+++..|+||++.+..++....++ |+|.||..|+.+|+++ +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 45678999999999877778887 9999999999999998 789999998764
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.60 E-value=1.9e-15 Score=96.73 Aligned_cols=59 Identities=27% Similarity=0.600 Sum_probs=45.6
Q ss_pred hhcCCCCCcccccccccccCCC---------------ceEEeCCCCcccHHhHHHHHhc----CCccccccccccccc
Q 048466 43 KEANEFEGESCCVCLSRLKQGD---------------EMRVLPCLHRFHRACVDRWFNE----WTKTCPLCRFSMGEE 101 (128)
Q Consensus 43 ~~~~~~~~~~C~ICl~~~~~~~---------------~~~~l~C~H~f~~~Ci~~wl~~----~~~~CP~Cr~~~~~~ 101 (128)
.......+..|+||++.+..+. .+..++|+|.||..||..|+.. .+.+||+||+.+..+
T Consensus 18 ~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 18 EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp EECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred HhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3344445679999999997643 2336789999999999999952 266999999998766
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.3e-15 Score=89.20 Aligned_cols=54 Identities=28% Similarity=0.761 Sum_probs=43.0
Q ss_pred CCCCcccccccccccC-----------CCceEEeC-CCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQ-----------GDEMRVLP-CLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~-----------~~~~~~l~-C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
+.++..|+||++.+.. ++.+..++ |+|.||..||.+|+.+ +.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 3456789999998864 23345554 9999999999999998 78999999988654
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.53 E-value=4.4e-15 Score=87.24 Aligned_cols=56 Identities=21% Similarity=0.475 Sum_probs=46.6
Q ss_pred CCCCCcccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQG----DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~----~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...++..|+||++.+.++ +....++|||.||..|+..|+.. +.+||+||..+....
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 65 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCS
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhh
Confidence 445668899999998753 34567889999999999999998 789999999887553
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.53 E-value=7.8e-15 Score=82.11 Aligned_cols=51 Identities=31% Similarity=0.713 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCC-ceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGD-EMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~-~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
..+..|+||++.+.+++ ....++|+|.||..|+.+|+.. ..+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 35678999999986543 4677889999999999999998 689999998764
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=86.17 Aligned_cols=57 Identities=25% Similarity=0.585 Sum_probs=47.2
Q ss_pred cCCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCccccccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLH 105 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 105 (128)
....+...|+||++.+.++ ..+ +|+|.||..||..|+.. +..||+||..+.......
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCC
T ss_pred hhcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccc
Confidence 3445568899999999875 555 89999999999999988 789999999988765443
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.9e-15 Score=85.35 Aligned_cols=54 Identities=22% Similarity=0.495 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQG----DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~----~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
...+...|+||++.+.++ ..+..++|+|.||..|+..|+.. +.+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 445668899999998753 23467889999999999999998 7899999998764
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.50 E-value=2.4e-14 Score=90.84 Aligned_cols=54 Identities=22% Similarity=0.549 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCCC---------------ceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGD---------------EMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~---------------~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
..++..|+||++.|..+- .+..++|+|.||..||.+|+.. +.+||+||+.+...
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ 102 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCEE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcceee
Confidence 346788999999988541 3566889999999999999998 88999999987543
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9.4e-15 Score=86.13 Aligned_cols=53 Identities=30% Similarity=0.574 Sum_probs=45.6
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ ..++|+|.||..|+..|+.. ...||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 345667899999999876 77899999999999999998 689999999987653
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.49 E-value=2.4e-14 Score=83.51 Aligned_cols=52 Identities=35% Similarity=0.846 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
..+..|+||++.+.++ ...++|+|.||..|+..|+.. +.+||+||..+....
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCEE
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhhh
Confidence 3457899999998753 466789999999999999998 789999999987543
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=83.06 Aligned_cols=53 Identities=23% Similarity=0.510 Sum_probs=44.8
Q ss_pred CCcccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 49 EGESCCVCLSRLKQG----DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~----~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
++..|+||++.+.++ +....++|||.||..|+..|+.. +.+||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccc
Confidence 457899999998753 34567899999999999999998 789999999887653
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-14 Score=83.01 Aligned_cols=53 Identities=21% Similarity=0.424 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...+...|+||++.+.++ ..++|||.||..|+..|+......||+||..+..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345568899999999876 55799999999999999965467899999988764
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.47 E-value=2.4e-14 Score=85.67 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=46.3
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ ..++|||.||..||..|+..++.+||+||..+....
T Consensus 4 ~~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CCSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CCcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 345678999999999876 678999999999999999876779999999887553
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-14 Score=85.05 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=43.8
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
.......|+||++.+.++ ..++|+|.||..|+..|+.. ...||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 445567899999999875 66899999999999999988 789999999986
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.9e-14 Score=83.64 Aligned_cols=52 Identities=33% Similarity=0.989 Sum_probs=44.7
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.+ ..++|+|.||..|+..|+.. +.+||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 34556789999999875 67899999999999999997 889999999887654
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.45 E-value=7.3e-15 Score=92.20 Aligned_cols=54 Identities=26% Similarity=0.635 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccCCCceEE-eCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRV-LPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~-l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ .. ++|||.||..||..|+......||+||..+....
T Consensus 18 ~l~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 334557899999999865 55 7899999999999999984479999999987554
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1.7e-13 Score=82.76 Aligned_cols=54 Identities=30% Similarity=0.547 Sum_probs=45.5
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcC-----Ccccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEW-----TKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~-----~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ ..++|+|.||..|+..|+... ...||+||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred hCccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 345568999999999876 678999999999999999872 568999999987653
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8e-14 Score=82.26 Aligned_cols=53 Identities=26% Similarity=0.517 Sum_probs=44.4
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhc--CCccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNE--WTKTCPLCRFSMGEE 101 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~--~~~~CP~Cr~~~~~~ 101 (128)
...+...|+||++.+.++ ..++|+|.||..|+..|+.. ....||+||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 445668999999999875 66799999999999999973 356899999988654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.44 E-value=5.7e-14 Score=83.41 Aligned_cols=54 Identities=20% Similarity=0.445 Sum_probs=44.3
Q ss_pred cCCCCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhcC-Cccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNEW-TKTCPLCRFSMGEE 101 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~~-~~~CP~Cr~~~~~~ 101 (128)
....+...|+||++.+.++ ..++ |+|.||..||..|+... ...||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred ccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3445668899999999977 7789 99999999999999862 36899999975433
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=83.81 Aligned_cols=57 Identities=19% Similarity=0.449 Sum_probs=46.5
Q ss_pred cCCCCCcccccccccccCCCc-eEEeCCCCcccHHhHHHHHhcC--Cccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDE-MRVLPCLHRFHRACVDRWFNEW--TKTCPLCRFSMGEE 101 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~-~~~l~C~H~f~~~Ci~~wl~~~--~~~CP~Cr~~~~~~ 101 (128)
....+...|+||++.+...+. ...++|||.||..|+..|+... ...||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 344566889999999987443 4778999999999999999873 37899999987654
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-14 Score=84.87 Aligned_cols=54 Identities=33% Similarity=0.578 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcC------Ccccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEW------TKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~------~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ ..++|||.||..|+..|+... ...||+||..+....
T Consensus 8 ~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 445678899999999876 568999999999999999862 568999999987643
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.42 E-value=6.7e-14 Score=92.52 Aligned_cols=50 Identities=24% Similarity=0.740 Sum_probs=43.7
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
++..|+||++.+.++ ..++|||.||..||..|+.. +.+||+||..+....
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence 346799999999876 77899999999999999998 789999999986543
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=82.72 Aligned_cols=58 Identities=28% Similarity=0.711 Sum_probs=46.5
Q ss_pred CCCCCcccccccccccCCCceEEeCCC-----CcccHHhHHHHHhcC-Ccccccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCL-----HRFHRACVDRWFNEW-TKTCPLCRFSMGEEMKL 104 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~-----H~f~~~Ci~~wl~~~-~~~CP~Cr~~~~~~~~~ 104 (128)
...++..|.||++++..++.+ .+||+ |.||..||.+|+... ..+||+||..+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 445567899999998766555 58896 999999999999973 35899999999766543
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=82.24 Aligned_cols=54 Identities=35% Similarity=0.632 Sum_probs=45.1
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhc-----CCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNE-----WTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~-----~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ ..++|+|.||..|+..|+.. ....||+||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 345668999999999876 66799999999999999976 2568999999987643
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=2.3e-13 Score=78.74 Aligned_cols=54 Identities=22% Similarity=0.488 Sum_probs=43.3
Q ss_pred CCcccccccc-cccCCCce-EEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 49 EGESCCVCLS-RLKQGDEM-RVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~-~~~~~~~~-~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
++..|+||++ .+.++... ..++|||.||..|+..|+.+.+..||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3578999999 77765432 346899999999999998765678999999887653
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.38 E-value=1.4e-13 Score=87.35 Aligned_cols=50 Identities=24% Similarity=0.695 Sum_probs=43.7
Q ss_pred CCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
.+...|+||++.+.++ ..+ +|||.||..|+..|+.. +..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 4567899999999865 555 89999999999999998 68999999998765
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.38 E-value=5.1e-14 Score=90.66 Aligned_cols=55 Identities=24% Similarity=0.522 Sum_probs=2.9
Q ss_pred cCCCCCcccccccccccCCC---------------ceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGD---------------EMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~---------------~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..+..+..|+||++.|..+. .+..++|+|.||..||.+|+.. +.+||+||+.+..
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp EECCCC-----------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 33445679999999997531 2333579999999999999998 8899999998754
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.4e-13 Score=76.62 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=39.4
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhc--CCcccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNE--WTKTCPLC 94 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~--~~~~CP~C 94 (128)
...+...|+||++.+.++ ..++|||.||..||..|+.. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678999999999877 77899999999999999984 35689998
No 34
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.37 E-value=1.8e-13 Score=88.10 Aligned_cols=54 Identities=26% Similarity=0.487 Sum_probs=45.9
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ ..++|||.||..||..|+.....+||+||..+....
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 445567999999999876 668999999999999999984559999999987654
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.36 E-value=5.3e-13 Score=82.13 Aligned_cols=51 Identities=22% Similarity=0.463 Sum_probs=43.6
Q ss_pred CCCCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhc-CCccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNE-WTKTCPLCRFSMG 99 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~-~~~~CP~Cr~~~~ 99 (128)
...+...|+||++.+.++ ..++ |||.||..||..|+.. +...||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 445678999999999987 7889 9999999999999975 2368999999874
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=5.8e-13 Score=86.37 Aligned_cols=49 Identities=29% Similarity=0.674 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
+...|+||++.+.++ ..++|||.||..||..|+......||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 447899999999876 6789999999999999998645699999999876
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.35 E-value=7e-13 Score=86.22 Aligned_cols=55 Identities=22% Similarity=0.472 Sum_probs=46.4
Q ss_pred CCCcccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCccccccccccccccc
Q 048466 48 FEGESCCVCLSRLKQG----DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMK 103 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~----~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 103 (128)
.+...|+||++.+.++ +....++|||.||..||..|+.. +.+||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence 4567899999998754 34577899999999999999998 7799999999876654
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.34 E-value=1.3e-12 Score=78.50 Aligned_cols=57 Identities=23% Similarity=0.443 Sum_probs=44.3
Q ss_pred CCCCCcccccccccccCCCceEEe--CCCCcccHHhHHHHHhcCCccccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVL--PCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMK 103 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l--~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 103 (128)
...++..|+||++.+..++. ..+ +|||.||..|+..++......||.||+.+.....
T Consensus 7 ~~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34566889999999864332 334 4999999999999986657799999999986543
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=8.8e-13 Score=82.28 Aligned_cols=49 Identities=18% Similarity=0.657 Sum_probs=42.5
Q ss_pred CCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
+...|+||++.+.++ ..+ +|||.||..|+..|+.. +..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChh
Confidence 457899999999875 555 89999999999999997 78999999988764
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.2e-13 Score=74.23 Aligned_cols=46 Identities=39% Similarity=0.941 Sum_probs=38.5
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhc--CCcccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNE--WTKTCPLC 94 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~--~~~~CP~C 94 (128)
...+...|+||++.+.++ ..++|+|.||..|+..|+.. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345668899999999886 66899999999999999654 36789998
No 41
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=77.14 Aligned_cols=54 Identities=30% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcC-Cccccccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEW-TKTCPLCRFSMGEEMK 103 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~-~~~CP~Cr~~~~~~~~ 103 (128)
+....|+||.+.+..++ .-..|+|.||..||.+|+++. +.+||+||..+.....
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 44578999999998652 222699999999999999872 2799999998876543
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=8.1e-13 Score=83.95 Aligned_cols=53 Identities=25% Similarity=0.538 Sum_probs=43.7
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcC--Ccccccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEW--TKTCPLCRFSMGEEMKL 104 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~--~~~CP~Cr~~~~~~~~~ 104 (128)
....|+||++.+.++ ..++|||.||..|+..|+... ...||+||..+......
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 346899999999876 567999999999999999862 24899999988765433
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.30 E-value=9.7e-13 Score=89.21 Aligned_cols=50 Identities=32% Similarity=0.641 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
....|+||++.+.++ ..+ +|||.||..|+..|+..+...||+||..+...
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 446899999999865 555 89999999999999997677899999988643
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.29 E-value=7.3e-13 Score=88.79 Aligned_cols=50 Identities=26% Similarity=0.664 Sum_probs=43.9
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
+...|+||++.+.++ ..++|||.||..||..|+......||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999876 66899999999999999997456899999998866
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.28 E-value=3.7e-13 Score=86.18 Aligned_cols=50 Identities=24% Similarity=0.638 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
.++..|+||++.+.++ ..++|||.||..|+..|+..+...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3457899999999877 7789999999999999998756799999998864
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.26 E-value=3.4e-12 Score=81.72 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=43.6
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...|+||++.+.++ ..++|||.||..|+..|+......||+||..+....
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 57899999999876 668999999999999999875678999999987654
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=84.97 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=45.0
Q ss_pred cCCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
....+...|+||++.+.++ ..++|||.||..||..|+..+...||+||..+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred ccCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3456678999999999877 6689999999999999998755699999997643
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=7.5e-12 Score=81.28 Aligned_cols=55 Identities=22% Similarity=0.480 Sum_probs=45.7
Q ss_pred CCCCcccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQG----DEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~----~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
......|+||++.+..+ .....++|||.||..|+.+|+.. +.+||+||..+..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhc
Confidence 35567899999998752 23467789999999999999998 789999999987664
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.21 E-value=1.3e-11 Score=75.13 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=45.3
Q ss_pred CCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
..+...|+||++.+.++ ..++|||.|+..||..|+.. ..+||+||..+...
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChH
Confidence 34578999999999987 77899999999999999997 78999999988754
No 50
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.19 E-value=6.5e-12 Score=85.43 Aligned_cols=54 Identities=26% Similarity=0.487 Sum_probs=46.1
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.+.++ ..++|||.||..|+..|+.....+||+||..+....
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 455668999999999876 668999999999999999874569999999987653
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=3.7e-12 Score=71.64 Aligned_cols=49 Identities=29% Similarity=0.648 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
+.+...|+||++.+.++ ..++|+|.||..|+.. ....||+||+.+....
T Consensus 3 e~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEA----SGMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSS----SSSSCSSCCSSSSCCS
T ss_pred cccCCCceEeCCccCCe---EEcCCCCcccHHHHcc----CCCCCCcCCcEeecCC
Confidence 45667899999999987 7789999999999876 2568999999887654
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.18 E-value=1.8e-11 Score=76.74 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...+...|+||++.|.+| ..++|||.|+..||..|+.. ..+||+||..+...
T Consensus 25 ~~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTES 76 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTT
T ss_pred cCcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChh
Confidence 345678999999999987 77899999999999999996 78999999988754
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=2.8e-11 Score=75.61 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=46.1
Q ss_pred CCCCCcccccccccccCCCceEEeCCC-CcccHHhHHHHHhcCCcccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCL-HRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~-H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
...+...|+||++.|.++ ..++|| |.|+..||..|+.. ..+||+||..+....
T Consensus 18 ~~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQ 71 (98)
T ss_dssp SCCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTT
T ss_pred cCcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhh
Confidence 345578999999999987 778999 99999999999997 789999999887543
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.16 E-value=1.3e-11 Score=71.01 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCCceEEe--CCCCc-ccHHhHHHHHhcCCccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVL--PCLHR-FHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l--~C~H~-f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
......|.||++...+. ..+ ||||. ||..|+..|... +..||+||..+...
T Consensus 4 ~~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLV 57 (63)
T ss_dssp GGGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEE
T ss_pred CCcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhce
Confidence 34457899999987653 445 99998 999999999887 67999999988654
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.15 E-value=1.4e-11 Score=71.11 Aligned_cols=50 Identities=26% Similarity=0.511 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCCceEEe--CCCCc-ccHHhHHHHHhcCCccccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL--PCLHR-FHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l--~C~H~-f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
.++..|+||++...+. ..+ ||||. ||..|+..|... +..||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMI 58 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEE
T ss_pred CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhce
Confidence 3456899999987754 445 99999 899999999987 77899999988654
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.14 E-value=3e-11 Score=91.62 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=43.8
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
....|+||++.+.++ ..++|||.||..|+..|+......||+||..+....
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 347899999998765 778999999999999999843779999999887654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.09 E-value=6.1e-12 Score=74.66 Aligned_cols=46 Identities=24% Similarity=0.570 Sum_probs=38.9
Q ss_pred CCcccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCcccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHR-FHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~-f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
+...|+||++.+.++ ..++|||. ||..|+..| ..||+||..+....
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC-----ccCCCcCcCccCcE
Confidence 346899999998765 77899999 999999887 58999999887653
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=6.9e-11 Score=85.40 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=45.3
Q ss_pred CCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
......|+||++.+.+| ..++|||.||..||..|+..+..+||+||.++....
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 34668899999999987 778999999999999999874556999999987543
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=1.8e-11 Score=78.58 Aligned_cols=47 Identities=26% Similarity=0.489 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
.+...|+||++.+.++ ..+ +|||.||..||..|+. ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 4468899999999876 666 8999999999999987 589999998854
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=71.15 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhcC-----Cccccc--cccc-cccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNEW-----TKTCPL--CRFS-MGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~~-----~~~CP~--Cr~~-~~~~ 101 (128)
......|+||++.|.+| ..++ |||.|+..||..|+... ..+||+ |+.. +...
T Consensus 4 ~~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp CSSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CCcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 45668899999999987 7775 99999999999999862 358999 9866 5433
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.02 E-value=3.7e-10 Score=77.53 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=46.6
Q ss_pred hcCCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 44 EANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 44 ~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
.........|+||++.|.+| ..++|||.|+..||..|+.....+||+|+..+....
T Consensus 100 ~~~ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred ccCCcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 34456678899999999987 778999999999999999873347999999887653
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5.5e-10 Score=65.16 Aligned_cols=53 Identities=30% Similarity=0.659 Sum_probs=42.0
Q ss_pred cCCCCCcccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCccccccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVLPCLHR-FHRACVDRWFNEWTKTCPLCRFSMGEEMKLH 105 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~-f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 105 (128)
....+...|.||++...+. ..+||+|. ||..|+.. ...||+||..+.......
T Consensus 10 ~~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEECCC
T ss_pred ccCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc-----CCCCCCCCcchhceEEee
Confidence 3445567899999987765 77899999 99999973 468999999987765433
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.7e-10 Score=68.48 Aligned_cols=46 Identities=24% Similarity=0.589 Sum_probs=37.7
Q ss_pred CCcccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCcccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHR-FHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~-f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
+...|+||++.+.++ ..++|||. ||..|+.. ...||+||..+....
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC-----CCCCccCCceecCcE
Confidence 346899999998765 66899999 99999953 468999999887653
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.93 E-value=1.8e-10 Score=85.88 Aligned_cols=57 Identities=23% Similarity=0.715 Sum_probs=42.9
Q ss_pred CCCCCcccccccccccCCCceE-----EeCCCCcccHHhHHHHHhcCC----------cccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMR-----VLPCLHRFHRACVDRWFNEWT----------KTCPLCRFSMGEEM 102 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~-----~l~C~H~f~~~Ci~~wl~~~~----------~~CP~Cr~~~~~~~ 102 (128)
..+...+|+||++.+.....+. ...|+|.||..|+.+|++... ..||+||..+..+.
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 3456678999999988632221 236999999999999998621 46999999887663
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.93 E-value=1e-10 Score=70.25 Aligned_cols=54 Identities=20% Similarity=0.474 Sum_probs=42.5
Q ss_pred CcccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCccccccccccccccccccCcccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHR-FHRACVDRWFNEWTKTCPLCRFSMGEEMKLHAGLGEV 111 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~-f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 111 (128)
...|+||++.+.+. ..+||||. ||..|+..| ..||+||..+.............
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~p~~~~ 72 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLPTHTS 72 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECBCTTCCC
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEEeCcchh
Confidence 46899999998765 77899999 999998764 38999999998776555444333
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=5.8e-10 Score=68.81 Aligned_cols=53 Identities=19% Similarity=0.485 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhc----C---Cccccc--cccc--cccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNE----W---TKTCPL--CRFS--MGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~----~---~~~CP~--Cr~~--~~~~ 101 (128)
+..+|+||++.+..++.+...+|+|.||..||..++.. + ...||. |+.. +...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 45789999999876544444479999999999999874 1 248999 9988 5544
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.88 E-value=1.8e-09 Score=61.49 Aligned_cols=51 Identities=22% Similarity=0.602 Sum_probs=39.0
Q ss_pred CCCCcccccccccccCCCceEEeCCC--C---cccHHhHHHHHhc-CCcccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCL--H---RFHRACVDRWFNE-WTKTCPLCRFSMGE 100 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~--H---~f~~~Ci~~wl~~-~~~~CP~Cr~~~~~ 100 (128)
+++...|.||++.... .+ .+||. + .||..|+.+|+.. ++.+||+|+..+..
T Consensus 3 ~~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4566789999998433 33 57854 5 8999999999985 46789999998753
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.75 E-value=6e-09 Score=75.14 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=42.6
Q ss_pred CCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhc-CCccccc--cccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNE-WTKTCPL--CRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~-~~~~CP~--Cr~~~~~~ 101 (128)
......||||++.|.+| ++...|||.|+..||..|+.. +...||+ |+..+...
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 34557899999999865 343589999999999999986 3468999 99977654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=4.9e-09 Score=78.68 Aligned_cols=47 Identities=26% Similarity=0.637 Sum_probs=39.7
Q ss_pred CCCcccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCcccccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLPCLHR-FHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~C~H~-f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
.++..|+||++.+.++ ..+||||. ||..|+..| ..||+||..+....
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL-----RKCPICRGIIKGTV 340 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC-----SBCTTTCCBCCEEE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC-----CcCCCCCCCccCeE
Confidence 3457899999999875 77899999 999999876 58999999887653
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=1.8e-08 Score=57.39 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=42.6
Q ss_pred CcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCccccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMK 103 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 103 (128)
...|+|+++.+.++ ..+ ++||.|...||.+|+.. +.+||+.+..+...+-
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhc
Confidence 36799999999976 666 79999999999999997 6689999998876653
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.53 E-value=8.2e-08 Score=59.36 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=42.1
Q ss_pred ccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKL 104 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 104 (128)
.|++|--++.. ..+.+||+|+||..|+..|.+++.++||.|+..+...+..
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 58888887763 3477899999999999999887678999999998876653
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.19 E-value=2.6e-06 Score=60.82 Aligned_cols=51 Identities=31% Similarity=0.620 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhcC-Ccccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNEW-TKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~~-~~~CP~Cr~~~~~~~ 102 (128)
....|.||.+.+..+ ...+ |+|.||..|+..|++.. +..||.|+..++...
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 467899999999876 4444 99999999999999862 458999999887653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.96 E-value=0.00055 Score=41.65 Aligned_cols=56 Identities=18% Similarity=0.541 Sum_probs=44.1
Q ss_pred hcCCCCCcccccccccccCCCceEEeCC-CCcccHHhHHHHHhcCCccccccccccccccccc
Q 048466 44 EANEFEGESCCVCLSRLKQGDEMRVLPC-LHRFHRACVDRWFNEWTKTCPLCRFSMGEEMKLH 105 (128)
Q Consensus 44 ~~~~~~~~~C~ICl~~~~~~~~~~~l~C-~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 105 (128)
....-.-..|-.|+-... ..+.| .|.+|..|+...+.. +..||+|+..++.+....
T Consensus 22 d~s~~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp SCCCSCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSCTT
T ss_pred CccccCcccChhhccccC-----CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcceecC
Confidence 344455578999998754 45677 699999999998888 889999999998876543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.85 E-value=0.0063 Score=37.12 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=25.8
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHH
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRW 83 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~w 83 (128)
++..|+||.+.+..+....-+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35789999986433323334789999999999973
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.04 E-value=0.02 Score=32.53 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=34.1
Q ss_pred cCCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcC---Ccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEW---TKTCPLCRFSM 98 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~---~~~CP~Cr~~~ 98 (128)
.....+..|.+|.+. ..+..- .|...||..|+.+.+... .=.||.|+...
T Consensus 7 ~~~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 7 QNLAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred cCCCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 344556779999753 223333 489999999998877652 23799997643
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=93.90 E-value=0.21 Score=30.01 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=37.9
Q ss_pred CCcccccccccccCC---CceEEe-CCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 49 EGESCCVCLSRLKQG---DEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~---~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
....|.||-+++... +..... .|+--.|..|..--.+.++..||.|++.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 446899999986532 222222 3777789999986666678899999998863
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.91 E-value=0.16 Score=28.11 Aligned_cols=47 Identities=23% Similarity=0.539 Sum_probs=31.6
Q ss_pred CCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCcccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRF 96 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~ 96 (128)
+...+..|.+|... ..+..- .|...||..|+.+-+.. +.-.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 44556789999873 223333 48889999999875433 2336999965
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.51 E-value=0.41 Score=40.31 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=45.8
Q ss_pred cCCCCCcccccccccccCCCceEEeCCC-CcccHHhHHHHHhcCCcccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVLPCL-HRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~-H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
.+..+...|||-++.+.+| ..++-| +.|-...|.+|+.. ..+||.=|.++....
T Consensus 886 ~~iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLED 940 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGG
T ss_pred cCCcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccc
Confidence 4456678899999999987 778887 58999999999998 789999999887654
No 79
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.82 E-value=0.16 Score=30.52 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=34.5
Q ss_pred CCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCccccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRFSMGEE 101 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~~~~~ 101 (128)
....+..|.+|... + .+..- .|...||..|+.+=+.. +.-.||.|+..-..+
T Consensus 21 ~d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 21 LDDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred cCCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence 44566789999974 2 22333 38889999999875543 223699997654443
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.43 E-value=0.095 Score=30.18 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCCCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhc---CCcccccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNE---WTKTCPLCRFSMGE 100 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~~~~ 100 (128)
+..+...|.+|...-. ++.+..-. |...||..|+..-... ..-.||.|+..+..
T Consensus 14 ~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred cCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3445567999988743 33344443 8889999998753332 23479999776543
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.06 E-value=0.097 Score=36.09 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=32.8
Q ss_pred CCCCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhc---CCcccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNE---WTKTCPLCRFSM 98 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~~ 98 (128)
+...+..|.+|... ..+.... |...||..|+.+-+.. +.-.||.|+..-
T Consensus 3 ~d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CCSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34456779999854 2233333 8899999999775553 233799997644
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.12 E-value=0.49 Score=26.18 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhc----CCcccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNE----WTKTCPLCRF 96 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~----~~~~CP~Cr~ 96 (128)
..+...|++|.........+..-. |..-||..|+.--... ....||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 355678999998875444444443 8888999998632211 2457999965
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.91 E-value=0.37 Score=25.43 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=27.4
Q ss_pred ccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCcccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRF 96 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~ 96 (128)
.|.+|...-..+ .+..- .|...||..|+.+=+.. +.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888653222 23333 48899999999753333 1235888864
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.79 E-value=0.61 Score=27.70 Aligned_cols=34 Identities=29% Similarity=0.644 Sum_probs=24.1
Q ss_pred CCCCCcccccccccccCCCceEEeC---CCCcccHHhHHHH
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLP---CLHRFHRACVDRW 83 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~---C~H~f~~~Ci~~w 83 (128)
....+..|.||-.--. . ..+| |+.+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~~~t~-~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTA-E---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCS-S---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccc-c---ceeccccccccccHhhcccc
Confidence 3446778999975432 2 2333 8999999999986
No 85
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=85.60 E-value=0.17 Score=28.26 Aligned_cols=52 Identities=19% Similarity=0.495 Sum_probs=33.0
Q ss_pred CCCCcccccccccccC-CCceEEe-CCCCcccHHhHHHHHh------cCCcccccccccc
Q 048466 47 EFEGESCCVCLSRLKQ-GDEMRVL-PCLHRFHRACVDRWFN------EWTKTCPLCRFSM 98 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~-~~~~~~l-~C~H~f~~~Ci~~wl~------~~~~~CP~Cr~~~ 98 (128)
..++..|.+|...... +..+..- .|...||..|+.+-+. .+.-.||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4456789999986432 2233333 4899999999886332 1234689886543
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=85.35 E-value=1.3 Score=28.86 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=33.0
Q ss_pred cCCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHh----------cCCcccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFN----------EWTKTCPLCRF 96 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~----------~~~~~CP~Cr~ 96 (128)
.+...+..|.+|.+- ..+..- .|...||..|+.+-+. ...-.||.|+.
T Consensus 58 d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CTTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred cCCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345567889999975 223333 4899999999997553 12337999964
No 87
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.31 E-value=1.5 Score=25.78 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=29.4
Q ss_pred CCCcccccccccccCCCceEEeC--CCCcccHHhHHHHHhc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLP--CLHRFHRACVDRWFNE 86 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~--C~H~f~~~Ci~~wl~~ 86 (128)
.....|.+|.+.+++. ...+.| =.|.||..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 4557899999999874 444444 3799999999988876
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.15 E-value=0.17 Score=34.17 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCcccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRFSM 98 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~~ 98 (128)
.+..|.+|... ++ +..- .|...||..|+.+-+.. +.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 22 3333 38899999998775554 233699998754
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.76 E-value=1.2 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCccccccccccc-----CCCceEE-eCCCCcccHHhHH
Q 048466 49 EGESCCVCLSRLK-----QGDEMRV-LPCLHRFHRACVD 81 (128)
Q Consensus 49 ~~~~C~ICl~~~~-----~~~~~~~-l~C~H~f~~~Ci~ 81 (128)
....|.+|+..-. .++.+.. ..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4578999987531 2223333 3499999999995
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.85 E-value=0.16 Score=28.10 Aligned_cols=48 Identities=27% Similarity=0.571 Sum_probs=30.8
Q ss_pred CCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRFS 97 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~ 97 (128)
+...+..|.+|.+. + .+..- .|...||..|+.+-+.. +.-.||.|+..
T Consensus 5 ~d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 34556789999863 2 22222 38889999999864443 12369999653
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.57 E-value=1.1 Score=24.99 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCCCcccccccccccCCCceEEe--CCCCcccHHhHH
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVL--PCLHRFHRACVD 81 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l--~C~H~f~~~Ci~ 81 (128)
......|++|..+....+.+..- .|..-||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45567899999998765544444 488889999975
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.53 E-value=0.31 Score=30.09 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=26.8
Q ss_pred CCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHh
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFN 85 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~ 85 (128)
....+..|.+|.+.=...+.+.--.|...||..|+...+.
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 3456678999988632222233345999999999986554
No 93
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.18 E-value=0.88 Score=30.18 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHh----cCCccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFN----EWTKTCPLCRFS 97 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~----~~~~~CP~Cr~~ 97 (128)
..+...| +|......+..+..-. |...||..|+.--.. ...-.||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3455678 9998754333344443 888999999852111 124579999764
No 94
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.07 E-value=0.11 Score=28.61 Aligned_cols=48 Identities=25% Similarity=0.570 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRFSMG 99 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~~~ 99 (128)
..+..|.+|... + .+..- .|...||..|+.+-+.. +.-.||.|+....
T Consensus 3 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 345789999874 2 22333 48999999999864433 2236999966544
No 95
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.26 E-value=1.9 Score=24.84 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHh----cCCcccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFN----EWTKTCPLCRFSM 98 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~----~~~~~CP~Cr~~~ 98 (128)
.+...| +|.........+..-. |..-||..|+.--.. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344556 8988765333444444 888899999852111 1245899998754
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.53 E-value=0.19 Score=27.31 Aligned_cols=46 Identities=24% Similarity=0.551 Sum_probs=29.5
Q ss_pred CCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCcccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRF 96 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~ 96 (128)
...+..|.+|... + .+..- .|...||..|+.+-+.. +.-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4456789999874 2 22333 48899999999764433 1225888753
No 97
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=78.50 E-value=3.4 Score=26.39 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=31.2
Q ss_pred cCCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHH-----h-----cCCcccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWF-----N-----EWTKTCPLCRF 96 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl-----~-----~~~~~CP~Cr~ 96 (128)
.++..+..|.+|.+- ..+..- .|...||..|+.+-+ . ...=.|++|+-
T Consensus 52 d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345566779999975 222222 388999999999752 1 12237999954
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.11 E-value=0.15 Score=30.74 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRFS 97 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~ 97 (128)
..+...|.||...-.. +.+..- .|...||..|+.+-+.. +.-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3445679999876432 223333 38999999999754433 12269999664
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.07 E-value=0.39 Score=26.92 Aligned_cols=47 Identities=30% Similarity=0.580 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRFS 97 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~ 97 (128)
...+..|.+|.+. + .+..- .|...||..|+.+-+.. +.-.||.|...
T Consensus 5 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4566789999864 2 23333 48889999999854433 22369999653
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.00 E-value=0.6 Score=28.93 Aligned_cols=45 Identities=29% Similarity=0.589 Sum_probs=27.5
Q ss_pred ccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCcccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---WTKTCPLCRF 96 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~ 96 (128)
.|.+|...-.+++.+..- .|...||..|+.+-+.. +.=.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 567777642222233333 38999999999765443 1236888864
No 101
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=77.79 E-value=1.5 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=25.3
Q ss_pred CCCCCcccccccccccCCCceEEeCC-CCcccHHhHHHH
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLPC-LHRFHRACVDRW 83 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~C-~H~f~~~Ci~~w 83 (128)
..++..-|.||.++- .++-+.| +-.||..|+.+.
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 445567799999982 3466678 778999998764
No 102
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.38 E-value=1.7 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=25.8
Q ss_pred hcCCCCCcccccccccccCCCceEEe-CCCCcccHHhHHH
Q 048466 44 EANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDR 82 (128)
Q Consensus 44 ~~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~ 82 (128)
...+.+...|.+|...|..-..--.- .||.+||..|...
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34455667899999998753211222 4999999999753
No 103
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.05 E-value=0.82 Score=25.23 Aligned_cols=43 Identities=23% Similarity=0.459 Sum_probs=28.2
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLC 94 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~C 94 (128)
..|-.|...+.....+.--.|++.||.+|=.- +...-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-HHhhccCCcCC
Confidence 45999999986532222234999999999542 22224579987
No 104
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.45 E-value=0.61 Score=28.28 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=28.7
Q ss_pred CcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc--CCcccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE--WTKTCPLCRF 96 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~--~~~~CP~Cr~ 96 (128)
...| ||-.....+ .+..- .|...||..|+..-... ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 887765544 33333 48899999998653222 1347999974
No 105
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.84 E-value=0.79 Score=26.27 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=29.6
Q ss_pred CcccccccccccCCCceEEe-CCCCcccHHhHHHHH--------hcCCcccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWF--------NEWTKTCPLCRFSM 98 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl--------~~~~~~CP~Cr~~~ 98 (128)
...| +|......+ .+..- .|..-||..|+.--. ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4557 898876532 33333 488899999985211 11256899997644
No 106
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=75.69 E-value=3.9 Score=23.18 Aligned_cols=52 Identities=17% Similarity=0.322 Sum_probs=32.9
Q ss_pred cCCCCCcccccccccc-cCCCceEEeC-CCCcccHHhHHHHHh-cCCcccccccc
Q 048466 45 ANEFEGESCCVCLSRL-KQGDEMRVLP-CLHRFHRACVDRWFN-EWTKTCPLCRF 96 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~-~~~~~~~~l~-C~H~f~~~Ci~~wl~-~~~~~CP~Cr~ 96 (128)
.....+..|.||.+.- .+++.+..-. |.-.||..|+..-.. .+.-.||.|+.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4556678899998763 2223333333 889999999974221 12336888854
No 107
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=75.33 E-value=1 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=21.7
Q ss_pred ccccccccccc------CCCceEE-eCCCCcccHHhHHHH
Q 048466 51 ESCCVCLSRLK------QGDEMRV-LPCLHRFHRACVDRW 83 (128)
Q Consensus 51 ~~C~ICl~~~~------~~~~~~~-l~C~H~f~~~Ci~~w 83 (128)
..|.+|+..-. .++.+.. ..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46899987541 1223333 359999999998743
No 108
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=74.97 E-value=1.6 Score=28.83 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=17.6
Q ss_pred CccccccccccccccccccCcccccccceeeeeecccccCC
Q 048466 88 TKTCPLCRFSMGEEMKLHAGLGEVLTDEMVIWFSSFHVAGF 128 (128)
Q Consensus 88 ~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (128)
+..-|+|+..+... ..++....|.......+||||
T Consensus 12 ~~~~~~C~~~yG~~------~GnQP~G~M~~~~~~~sLpGy 46 (159)
T 3pg6_A 12 SGLVPRGSTSYGIQ------KGNQPEGSMVFTVSRDSLPGY 46 (159)
T ss_dssp -------------C------CCCCCSEEEEEEEESSCCTTC
T ss_pred CCcccccCccCccc------ccCCCCCeEEEEecCCCCCCC
Confidence 34579999988876 456667788888889999998
No 109
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.87 E-value=0.59 Score=27.80 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=34.8
Q ss_pred CCcccccccccccC-CCceEEeC-CCCcccHHhHHHHHh-------cCCcccccccccccccc
Q 048466 49 EGESCCVCLSRLKQ-GDEMRVLP-CLHRFHRACVDRWFN-------EWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 49 ~~~~C~ICl~~~~~-~~~~~~l~-C~H~f~~~Ci~~wl~-------~~~~~CP~Cr~~~~~~~ 102 (128)
.+..|.+|...-.. +..+..-. |...||..|+.+-+. .+.=.|+.|+.......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 35689999986332 12333333 899999999986543 12337999977554443
No 110
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.25 E-value=2.4 Score=22.36 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=26.5
Q ss_pred ccccccccccCCCceEEe--CCCCcccHHhHHHHH---hcCCccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVL--PCLHRFHRACVDRWF---NEWTKTCPLCR 95 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l--~C~H~f~~~Ci~~wl---~~~~~~CP~Cr 95 (128)
.|.+|..+...+..+..- .|..-||..|+.--. ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467888877544434433 377789999975211 11356788874
No 111
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=74.05 E-value=3.3 Score=25.52 Aligned_cols=51 Identities=18% Similarity=0.470 Sum_probs=31.0
Q ss_pred hcCCCCCcccccccccccCCCceEEeC---CCCcccHHhHHHHHhc---CCcccccccccccc
Q 048466 44 EANEFEGESCCVCLSRLKQGDEMRVLP---CLHRFHRACVDRWFNE---WTKTCPLCRFSMGE 100 (128)
Q Consensus 44 ~~~~~~~~~C~ICl~~~~~~~~~~~l~---C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~~~~ 100 (128)
+.....+..|.+|.+. ..+..-. |...||..|+. +.. +.-.||.|....-.
T Consensus 9 ~~~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp -CCCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCcCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 3445667789999842 2333333 77899999997 443 12258877654443
No 112
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=73.88 E-value=4.3 Score=30.39 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=32.9
Q ss_pred cccccccccccCCCceEEeCCCCc--ccHHhHHHHHhc-CCccccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHR--FHRACVDRWFNE-WTKTCPLCRFSMGEE 101 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~--f~~~Ci~~wl~~-~~~~CP~Cr~~~~~~ 101 (128)
..|++=...+..| .+...|.|. |-..-+..+..+ ..-.||+|.+.+...
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 5699888887754 455569998 555544444433 244899999887643
No 113
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=71.41 E-value=2.8 Score=28.34 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=35.1
Q ss_pred CcccccccccccCCCc---eEEeC-CCCcccHHhHHHH------Hhc----CCcccccccccccc
Q 048466 50 GESCCVCLSRLKQGDE---MRVLP-CLHRFHRACVDRW------FNE----WTKTCPLCRFSMGE 100 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~---~~~l~-C~H~f~~~Ci~~w------l~~----~~~~CP~Cr~~~~~ 100 (128)
+..|+||...+..++. +..-. |..-||..|..-- +.. ..-.||.|+..-+.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 4579999998877652 55554 8999999998421 110 14589999876543
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.35 E-value=3.5 Score=24.04 Aligned_cols=38 Identities=11% Similarity=0.186 Sum_probs=26.1
Q ss_pred cCCCCCcccccccccccCCCceEEe-CCCCcccHHhHHH
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDR 82 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~ 82 (128)
..+.+...|.+|...|..-..--.- .||.+||..|...
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3445567899999998753222223 4999999999654
No 115
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=71.19 E-value=3.5 Score=24.36 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=34.4
Q ss_pred cCCCCCcccccccccc-cCCCceEEeC-CCCcccHHhHHHHHh-cCCcccccccccccc
Q 048466 45 ANEFEGESCCVCLSRL-KQGDEMRVLP-CLHRFHRACVDRWFN-EWTKTCPLCRFSMGE 100 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~-~~~~~~~~l~-C~H~f~~~Ci~~wl~-~~~~~CP~Cr~~~~~ 100 (128)
....++..|.||...- .+++.+..-. |.-.||..|+..-+. .+.-.||.|......
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3445668899999753 1222333333 888999999975321 123369999765433
No 116
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.42 E-value=1.8 Score=24.69 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=30.8
Q ss_pred cCCCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
........|+.|-+.+... ....-+..||..| .+|-.|+..+...
T Consensus 10 ~~~~~~~~C~~C~~~I~~~---~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 10 ARGLGKYICQKCHAIIDEQ---PLIFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCCBCTTTCCBCCSC---CCCCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred hhccCCCCCccCCCEecce---EEEECcceeCCCC---------CEeCCCCCccCCC
Confidence 3444557899999988732 2234577788877 3688898887754
No 117
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.19 E-value=5.7 Score=29.87 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=32.4
Q ss_pred cccccccccccCCCceEEeCCCCc--ccHHhHHHHHhc-CCccccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHR--FHRACVDRWFNE-WTKTCPLCRFSMGEE 101 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~--f~~~Ci~~wl~~-~~~~CP~Cr~~~~~~ 101 (128)
..||+=...+..+ ++...|.|. |-..-+..+..+ ..-.||+|.+.+...
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 5699888887754 455569998 554444443333 344899998877544
No 118
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.81 E-value=1.1 Score=21.85 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=7.5
Q ss_pred CcccccccccccC
Q 048466 50 GESCCVCLSRLKQ 62 (128)
Q Consensus 50 ~~~C~ICl~~~~~ 62 (128)
+..||+|+..+..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 3556666665554
No 119
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.57 E-value=3.1 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=24.9
Q ss_pred cCCCCCcccccccccccCCCceEEe-CCCCcccHHhHH
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVD 81 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~ 81 (128)
..+.....|.+|...|..-..--.- .||++||..|..
T Consensus 64 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 64 AEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred ccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3334456899999998753222223 499999999964
No 120
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.42 E-value=0.73 Score=31.27 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=29.9
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCcccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNE---WTKTCPLCRFSM 98 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~---~~~~CP~Cr~~~ 98 (128)
+..|.+|... ++.+..-.|...||..|+.+=+.. +.-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999854 222222248889999999764443 233699997653
No 121
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=68.05 E-value=1 Score=31.59 Aligned_cols=44 Identities=30% Similarity=0.570 Sum_probs=24.7
Q ss_pred ccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---C-Ccccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---W-TKTCPLCRF 96 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~-~~~CP~Cr~ 96 (128)
.|.+|...-.. ..+..- .|...||..|+.+=+.. + .=.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57777764222 223333 48999999999864443 1 225999964
No 122
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.88 E-value=3.9 Score=23.80 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCCCCcccccccccccCCCceEEe-CCCCcccHHhHH
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVD 81 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~ 81 (128)
.+.+...|.+|...|..-..--.- .||.+||..|..
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 445557899999998643211222 499999999954
No 123
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=67.86 E-value=3.6 Score=25.16 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=33.3
Q ss_pred CcccccccccccCCCceEEe--CCCCcccHHhHHHHH---h------cCCccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVL--PCLHRFHRACVDRWF---N------EWTKTCPLCRFSMG 99 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l--~C~H~f~~~Ci~~wl---~------~~~~~CP~Cr~~~~ 99 (128)
...|.+|..++.....+..- .|..-||..|+.--- . .....||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46799999997654444444 488889999985211 0 02457999977543
No 124
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.30 E-value=3.4 Score=24.00 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=30.1
Q ss_pred CCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
......|+.|-+.+... ....-+..||..|+ .|-.|+..+..
T Consensus 22 ~~~~~~C~~C~~~I~~~---~v~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRGP---FLVALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCCSC---EEEETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCCccCCCEecce---EEEECCccccccCC---------ccCCCCCCCCC
Confidence 34457899999998532 33346788998773 68889888764
No 125
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.10 E-value=3.9 Score=24.18 Aligned_cols=51 Identities=18% Similarity=0.417 Sum_probs=31.2
Q ss_pred CCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHh-----cCCcccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFN-----EWTKTCPLCRFSM 98 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~-----~~~~~CP~Cr~~~ 98 (128)
.+...|.+|...|..-..--.- .||.+||..|...+.. .....|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 3446799999998743221222 4999999999765332 1123566665444
No 126
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.79 E-value=5.2 Score=25.60 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=30.5
Q ss_pred CCCCcccccccccccC--CCceEEeCCCCcccHHhHHHHHh-c--CCccccccccc
Q 048466 47 EFEGESCCVCLSRLKQ--GDEMRVLPCLHRFHRACVDRWFN-E--WTKTCPLCRFS 97 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~--~~~~~~l~C~H~f~~~Ci~~wl~-~--~~~~CP~Cr~~ 97 (128)
......|.+|...|.- +....-..|.|.+|..|-..-.. . ..-.|-+|+..
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 3567889999999842 22223335899999988542100 0 01147777653
No 127
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.73 E-value=5.2 Score=21.82 Aligned_cols=39 Identities=23% Similarity=0.618 Sum_probs=27.8
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
...|+.|-+.+... ....-+..||..|. +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTG---GVTYREQPWHKECF---------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSS---EEESSSSEEETTTS---------BCSSSCCBCTT
T ss_pred CCCCcccCCeeccc---eEEECccccCCCCC---------ccCCCCCcCCc
Confidence 35799999988743 33456778888773 68888887753
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.59 E-value=5 Score=23.67 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=34.4
Q ss_pred CCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHh------cCCccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFN------EWTKTCPLCRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~------~~~~~CP~Cr~~~~~~ 101 (128)
..+...|.+|...|..-..--.- .||.+||..|....+. .....|-.|-..+...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 34456899999998753222222 4999999999764321 1134688886655443
No 129
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.92 E-value=3.9 Score=23.09 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
.....|+.|-+.+... ....-+..||..|+ +|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV---FVKLRDRHRHPECY---------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSS---CEECSSCEECTTTT---------SCSSSCCCHHH
T ss_pred CCCCccccCCCCccCc---EEEECcceeCcCcC---------eeCCCCCCCCC
Confidence 3456899999998753 33456788998874 68888887753
No 130
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=64.68 E-value=5.9 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=21.8
Q ss_pred cccccccccccCCCceEEe-CCCCcccHHhHH
Q 048466 51 ESCCVCLSRLKQGDEMRVL-PCLHRFHRACVD 81 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~ 81 (128)
..|.+|...|..-..--.- .||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 5899999998753211222 499999999964
No 131
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.11 E-value=1 Score=28.51 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNEWTKTCPLCRFS 97 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~ 97 (128)
.....|..|...|..-..--.- .||.+||..|....... ...|-.|-..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHH
Confidence 3346899999998743221223 59999999997654443 5578888553
No 132
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.76 E-value=1.2 Score=25.87 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=27.2
Q ss_pred ccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---C-Ccccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE---W-TKTCPLCRF 96 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~---~-~~~CP~Cr~ 96 (128)
.|.+|...-.. ..+..- .|...||..|+.+-+.. + .=.||.|..
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67888864322 233333 48999999999854443 1 225888854
No 133
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=62.87 E-value=5.2 Score=21.57 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=28.1
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
...|+.|-+.+... ....-+..||..|. +|..|+..+..
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGR---VVNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSC---EECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCCcccCCEecce---EEEECccccccCcC---------EECCCCCCCCC
Confidence 46799999988732 33446778998773 68889887764
No 134
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.76 E-value=0.71 Score=26.82 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=18.8
Q ss_pred CCCCcccHHhHHHHHhc---CC-cccccccc
Q 048466 70 PCLHRFHRACVDRWFNE---WT-KTCPLCRF 96 (128)
Q Consensus 70 ~C~H~f~~~Ci~~wl~~---~~-~~CP~Cr~ 96 (128)
.|...||..|+.+-|.. +. =.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 38899999999865543 12 36888864
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.01 E-value=6.5 Score=21.49 Aligned_cols=42 Identities=19% Similarity=0.536 Sum_probs=28.6
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...|+.|-+.+...+. ....-+..||..|. +|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHCF---------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTTC---------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCcc-EEEECccccCcccC---------eECCCCCcCCCC
Confidence 4679999998875322 33346778898773 688888877643
No 136
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=61.86 E-value=2.1 Score=23.99 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=4.2
Q ss_pred cccccccccc
Q 048466 52 SCCVCLSRLK 61 (128)
Q Consensus 52 ~C~ICl~~~~ 61 (128)
.|..|...+.
T Consensus 29 ~C~~C~~~L~ 38 (76)
T 1iml_A 29 KCEKCGKTLT 38 (76)
T ss_dssp BCTTTCCBCC
T ss_pred CccccCccCC
Confidence 3444444443
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.98 E-value=4.2 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCcccccccccccCCCceEEe-CCCCcccHHhHH
Q 048466 49 EGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVD 81 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~ 81 (128)
++..|.+|...|..-..--.. .||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 357899999998743222223 489999998854
No 138
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.74 E-value=6.1 Score=22.82 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
.....|..|-+.+... ....-+..||..|+ +|-.|+..+...
T Consensus 23 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA---VVKARDKYRHPECF---------VCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCSC---CEESSSCEECTTTC---------CCSSSCCCTTTS
T ss_pred CcCCCcccCCCEeccc---EEEECCceECccCC---------EecCCCCCCCCC
Confidence 4456899999998752 33446788998873 688898877643
No 139
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=60.48 E-value=3.8 Score=24.92 Aligned_cols=12 Identities=42% Similarity=1.204 Sum_probs=10.9
Q ss_pred ccHHhHHHHHhc
Q 048466 75 FHRACVDRWFNE 86 (128)
Q Consensus 75 f~~~Ci~~wl~~ 86 (128)
||..|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 140
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=60.43 E-value=3.8 Score=24.96 Aligned_cols=12 Identities=42% Similarity=1.315 Sum_probs=11.0
Q ss_pred ccHHhHHHHHhc
Q 048466 75 FHRACVDRWFNE 86 (128)
Q Consensus 75 f~~~Ci~~wl~~ 86 (128)
||..|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 141
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.28 E-value=1.8 Score=25.98 Aligned_cols=48 Identities=27% Similarity=0.511 Sum_probs=27.9
Q ss_pred CCCCCcccccccccccCCCceEEeC--CC-CcccHHhHHHHHhc---CCccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVLP--CL-HRFHRACVDRWFNE---WTKTCPLCRFS 97 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l~--C~-H~f~~~Ci~~wl~~---~~~~CP~Cr~~ 97 (128)
+..+...| +|..... ++.+.-=. |. ..||..|+. +.. ..-.||.|+..
T Consensus 32 d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 33455667 9988643 32111112 44 579999986 232 23479999764
No 142
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.71 E-value=5.3 Score=22.73 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=29.2
Q ss_pred CCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
.....|+.|-+.+..++.+. .-+..||..|+ +|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF---------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLL--ALDKQWHVSCF---------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEE--ETTEEECTTTC---------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEE--ECCcccccccC---------CcCcCCCCcC
Confidence 34568999999987554333 34677888773 6888988775
No 143
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.49 E-value=4.2 Score=22.71 Aligned_cols=41 Identities=17% Similarity=0.445 Sum_probs=29.6
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...|+.|-+.+..++. ...-+..||..|. +|..|+..+...
T Consensus 9 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF---------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEK--VSSLGKDWHKFCL---------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTE--EEETTEEEETTTC---------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeE--EEECCeEeeCCCC---------CCCCCCCccCCC
Confidence 4679999999885543 3345778898773 688998887643
No 144
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.45 E-value=4.8 Score=22.00 Aligned_cols=40 Identities=18% Similarity=0.461 Sum_probs=26.9
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...|..|-+.+... ....-+..||..|+ +|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGR---VIKAMNNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSC---CEEETTEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecce---EEEECcccccccCC---------EeCCCCCcCCCC
Confidence 45799999888742 22335667887773 688888777654
No 145
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.84 E-value=4.7 Score=22.79 Aligned_cols=48 Identities=31% Similarity=0.518 Sum_probs=28.3
Q ss_pred CCCCCcccccccccccCCCceEEe-C--CC-CcccHHhHHHHHhc---CCcccccccccc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVL-P--CL-HRFHRACVDRWFNE---WTKTCPLCRFSM 98 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l-~--C~-H~f~~~Ci~~wl~~---~~~~CP~Cr~~~ 98 (128)
+..+...| +|...-. + .+..- . |. ..||..|+. +.. +.-.||.|+..-
T Consensus 12 d~~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 33455667 8988642 3 22222 2 54 579999997 332 234799997643
No 146
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.74 E-value=1.3 Score=25.07 Aligned_cols=44 Identities=30% Similarity=0.568 Sum_probs=25.4
Q ss_pred ccccccccccCCCceEEeC-CCCcccHHhHHHHHhc---C-Ccccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNE---W-TKTCPLCRF 96 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~---~-~~~CP~Cr~ 96 (128)
.|.+|...-.. ..+..-. |...||..|+.+=+.. + .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 34566643222 2233333 8899999999854443 1 236888864
No 147
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.69 E-value=6.8 Score=21.72 Aligned_cols=45 Identities=16% Similarity=0.421 Sum_probs=29.8
Q ss_pred CCCCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
......|+.|-+.+...+.+. ..-+..||..|. +|-.|+..+...
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 52 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIV-NSNGELYHEQCF---------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCE-EETTEEECTTTC---------CCTTTCCCCGGG
T ss_pred CCCCCCchhcCCccCCCceEE-EeCccEeccccC---------eECCCCCCCCCC
Confidence 345578999999987433322 234667888773 688888777654
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=57.26 E-value=5.2 Score=27.73 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCcccccccccccCCCceEEe-CCCCcccHHhHHH
Q 048466 49 EGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDR 82 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~ 82 (128)
++..|.+|...|..-..--.. .||.+||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456899999998753221223 4999999999654
No 149
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.07 E-value=5.5 Score=21.67 Aligned_cols=38 Identities=18% Similarity=0.531 Sum_probs=25.6
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
...|+.|-+.+... . ...-+..||..|. +|..|+..+.
T Consensus 5 ~~~C~~C~~~I~~~-~--~~a~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSG-G--ITYQDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTT-C--EEETTEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCcc-e--EEECccccccCcC---------EECCCCCCCC
Confidence 45788888887642 2 2335667887763 5888887775
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.89 E-value=8.7 Score=21.02 Aligned_cols=41 Identities=20% Similarity=0.537 Sum_probs=28.3
Q ss_pred CcccccccccccC--CCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 50 GESCCVCLSRLKQ--GDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 50 ~~~C~ICl~~~~~--~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
...|+.|-+.+.. .+. ....-+..||..|. +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC---------EeccCCCcCCC
Confidence 4679999998874 212 23346788998773 68888887753
No 151
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.72 E-value=6.5 Score=21.89 Aligned_cols=40 Identities=20% Similarity=0.522 Sum_probs=27.9
Q ss_pred CcccccccccccC--CCceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 50 GESCCVCLSRLKQ--GDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 50 ~~~C~ICl~~~~~--~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
...|+.|-+.+.. ... ....-+..||..|. +|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC---------ChhhCCCcCC
Confidence 3579999998874 212 33346778998874 6888888775
No 152
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.68 E-value=7.6 Score=22.09 Aligned_cols=42 Identities=26% Similarity=0.572 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
....|+.|-..+...+.+ ..-+..||..|+ +|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~CF---------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSCF---------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTTC---------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCcC---------EEcCCCCCcCCC
Confidence 446799999988654333 235677888873 688888877654
No 153
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=52.68 E-value=5.2 Score=24.30 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=26.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
.+..||.|..++..... +.+|..|-.. +.. ...||-|..++..-
T Consensus 31 M~~~CP~Cq~eL~~~g~-------~~hC~~C~~~-f~~-~a~CPdC~q~LevL 74 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG-------HARCRSCGEF-IEM-KALCPDCHQPLQVL 74 (101)
T ss_dssp CCCBCSSSCSBEEEETT-------EEEETTTCCE-EEE-EEECTTTCSBCEEE
T ss_pred ccccCccCCCcceecCC-------EEECccccch-hhc-cccCcchhhHHHHH
Confidence 44799999998764322 2224444322 122 45799998877543
No 154
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.23 E-value=6.2 Score=21.94 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=25.6
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
...|+-|-..+... ....-+..||..|. +|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~---~v~a~~~~wH~~CF---------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGR---VLEAGEKHYHPSCA---------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSC---CBCCSSCCBCTTTS---------CCSSSCCCCC
T ss_pred cCCcccCCCEecCe---eEEeCCCCCCCCcC---------EeCCCCCCCC
Confidence 35788888887642 22345777887773 5777877765
No 155
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.17 E-value=2.8 Score=25.82 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=18.4
Q ss_pred EEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 67 RVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 67 ~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
....||+.|. .-+.. ...||.|+..-....
T Consensus 69 ~C~~CG~~F~-----~~~~k-PsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINI-PSRCPKCKSEWIEEP 98 (105)
T ss_dssp BBTTTCCBCC-----CCSSC-CSSCSSSCCCCBCCC
T ss_pred ChhhCcCeec-----ccCCC-CCCCcCCCCCccCCc
Confidence 3446899982 11122 568999988665443
No 156
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.08 E-value=3.6 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=12.0
Q ss_pred HhcCCcccccccccccccc
Q 048466 84 FNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 84 l~~~~~~CP~Cr~~~~~~~ 102 (128)
+....+.||.|+..+....
T Consensus 2 i~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 2 IAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCTTTCCCCSSCC
T ss_pred ccccceECcCCCCeeEeCC
Confidence 3333567888877776543
No 157
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=51.33 E-value=4.1 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=10.1
Q ss_pred Cccccccccccccc
Q 048466 88 TKTCPLCRFSMGEE 101 (128)
Q Consensus 88 ~~~CP~Cr~~~~~~ 101 (128)
...||.|+...+..
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 34799998877654
No 158
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=51.09 E-value=3.2 Score=31.18 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCCcccccccccccCCCc-eEEeCCCCcccHHhHHHHHhc------CCccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDE-MRVLPCLHRFHRACVDRWFNE------WTKTCPLCRFS 97 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~-~~~l~C~H~f~~~Ci~~wl~~------~~~~CP~Cr~~ 97 (128)
.....|.+|...|..-.. .-.-.||++||..|....+.. ....|-.|-..
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 345679999998864311 112359999999998765421 12357777443
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=50.31 E-value=10 Score=20.52 Aligned_cols=43 Identities=16% Similarity=0.425 Sum_probs=29.8
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
....|+.|-..+...+.+. ..-+..||..|. +|-.|...+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEE-EETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEE-EeCcCeeCcCCC---------cccCCCCCCCCC
Confidence 4468999999987654332 235667888774 688888877654
No 160
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.25 E-value=8.9 Score=21.43 Aligned_cols=38 Identities=29% Similarity=0.637 Sum_probs=26.9
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..|+.|-+.+... ....-+..||..|. +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHRECL---------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTTC---------BCSSSCCBCTT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhhC---------CcccCCCcCCC
Confidence 5788998888653 33346778888773 68888887753
No 161
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.39 E-value=2.9 Score=22.78 Aligned_cols=45 Identities=33% Similarity=0.545 Sum_probs=25.2
Q ss_pred CCCCcccccccccccCCCceEEe-C--CC-CcccHHhHHHHHhc---CCcccccccc
Q 048466 47 EFEGESCCVCLSRLKQGDEMRVL-P--CL-HRFHRACVDRWFNE---WTKTCPLCRF 96 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~~~~~~~l-~--C~-H~f~~~Ci~~wl~~---~~~~CP~Cr~ 96 (128)
..+...| ||...-. + .+..- . |. ..||..|+. +.. +.-.||.|+.
T Consensus 7 ~~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3444566 8988632 3 22222 2 44 579999987 332 2346888854
No 162
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.13 E-value=12 Score=21.00 Aligned_cols=42 Identities=26% Similarity=0.571 Sum_probs=29.0
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...|+.|-+.+..++.+ ...-+..||..|. +|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF---------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC---------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceE-EEECccccccccC---------chhhCCCccCCC
Confidence 35799999988754332 3345778998773 688888877654
No 163
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.66 E-value=7.3 Score=21.90 Aligned_cols=38 Identities=18% Similarity=0.507 Sum_probs=26.1
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..|+.|-+.+... ....-+..||..|. +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTGP---FMVAGEFKYHPECF---------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCSC---CBCCTTCCBCTTSC---------BCTTTCCBCCT
T ss_pred CcCccCCCCcCce---EEEECCceeccccC---------CccCCCCccCC
Confidence 4689998888732 22335777887763 68888887754
No 164
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.35 E-value=7.3 Score=21.95 Aligned_cols=38 Identities=21% Similarity=0.587 Sum_probs=26.3
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..|+.|-+.+.. . ....-+..||..|. +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-E--VVSALGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-C--CEEETTEEECTTTS---------SCSSSCCCCCS
T ss_pred CcCccccCEecc-c--eEEECCceeCccCC---------ccccCCCCCCC
Confidence 479999998873 2 22345677888773 58888877754
No 165
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.82 E-value=7 Score=22.03 Aligned_cols=39 Identities=21% Similarity=0.518 Sum_probs=26.9
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
...|+.|-..+... ....-+..||..|. +|..|+..+..
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDR---ILRAMGKAYHPGCF---------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSC---CEEETTEEECTTTC---------BCSSSCCBCTT
T ss_pred CCccccCCCeecce---eEEECCccccHHhc---------CcccCCCccCC
Confidence 46788998888732 22335677887763 68888887763
No 166
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.12 E-value=15 Score=21.19 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=28.5
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
....|+.|-+.+...+. ...-+..||..|. +|-.|...+...
T Consensus 14 ~~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF---------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMER--LLANQQVFHISCF---------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSE--EECSSSEEETTTC---------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCcee--EEECCCEECCCCC---------eeCCCCCCCCCC
Confidence 35679999998875432 3456778888773 577777766543
No 167
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.64 E-value=15 Score=19.96 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=26.0
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
...|..|-+.+...+. ....-+..||..|+ +|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGA-GVVALDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSC-CEECSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCce-EEEECCCeEcccCC---------cccccCCcCC
Confidence 4578888887764221 22335677887763 6888887774
No 168
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.12 E-value=11 Score=20.43 Aligned_cols=42 Identities=19% Similarity=0.502 Sum_probs=27.9
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...|+.|-+.+...+.+ ...-+..||..|. +|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRK-MEYKGSSWHETCF---------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCE-EEETTEEEETTTT---------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceE-EEECcCeecccCC---------cccccCCccCCC
Confidence 35799999988754322 2235667887773 688888777543
No 169
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.03 E-value=8.1 Score=21.60 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=26.6
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
..|+.|-+.+... ....-+..||..|+ +|..|+..+...
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLEN---YLSAMDTVWHPECF---------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCSS---CEEETTEEECTTTC---------BCSSSCCBSCSS
T ss_pred CccccCCCeecce---eEEECCCeEecCcC---------ChhhCCCCCCCC
Confidence 5788888887752 22335667887763 688888877653
No 170
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=44.05 E-value=4.3 Score=22.32 Aligned_cols=44 Identities=34% Similarity=0.548 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCCceEEe-C--CC-CcccHHhHHHHHhc---CCcccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL-P--CL-HRFHRACVDRWFNE---WTKTCPLCRF 96 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l-~--C~-H~f~~~Ci~~wl~~---~~~~CP~Cr~ 96 (128)
.+...| +|.... .+ .+..- . |. .-||..|+. +.. +.-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 344566 898863 23 22222 2 44 789999986 222 2347998864
No 171
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.72 E-value=4.2 Score=22.08 Aligned_cols=44 Identities=36% Similarity=0.584 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCCceEEe-C--CC-CcccHHhHHHHHhc---CCcccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL-P--CL-HRFHRACVDRWFNE---WTKTCPLCRF 96 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l-~--C~-H~f~~~Ci~~wl~~---~~~~CP~Cr~ 96 (128)
.+...| +|.... .+ .+..- . |. .-||..|+. +.. +.-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344566 898864 23 22222 2 55 589999987 232 2346888854
No 172
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=43.68 E-value=21 Score=23.28 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCCcccccccccccC--CCceEEeCCCCcccHHhHHHHHhc-CCccccccccc
Q 048466 47 EFEGESCCVCLSRLKQ--GDEMRVLPCLHRFHRACVDRWFNE-WTKTCPLCRFS 97 (128)
Q Consensus 47 ~~~~~~C~ICl~~~~~--~~~~~~l~C~H~f~~~Ci~~wl~~-~~~~CP~Cr~~ 97 (128)
...+..|.+|...|.- +....-..|.|.+|..|-. |... ..-.|-+|+..
T Consensus 65 ~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 65 HLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp TGGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred cCCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 3457889999998642 2223334599999999962 2221 11257777553
No 173
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=43.63 E-value=26 Score=23.12 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=26.7
Q ss_pred cCCCCCcccccccccccCCCceEEe---CCCCcccHHhHHHHHhc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL---PCLHRFHRACVDRWFNE 86 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l---~C~H~f~~~Ci~~wl~~ 86 (128)
.++..+..|.+|-+- ..+..- .|...||..||...+..
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 445566789999874 222222 38889999999988765
No 174
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=43.40 E-value=6.3 Score=22.21 Aligned_cols=41 Identities=29% Similarity=0.645 Sum_probs=27.1
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEE 101 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~ 101 (128)
...|+.|-+.+..++. ...-+..||..|. +|-.|+..+...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF---------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF---------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE---------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC---------ccCCCCCCCCCC
Confidence 4579999998865442 2335677887763 577887777543
No 175
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.75 E-value=10 Score=21.20 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCCcccccccccccCCCceEEeC-CCCcccHHhHHHHHh---cCCccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFN---EWTKTCPLCRFS 97 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~---~~~~~CP~Cr~~ 97 (128)
.....| +|......+..+..-. |..-||..|+.--.. .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 344568 7988754443344443 888899999853211 124579999653
No 176
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.30 E-value=25 Score=21.52 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
.=..|..|...+..........=+..||..|...-+.. ...|..|...+..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 33567777777652111122234556777776654432 2368888776654
No 177
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=40.37 E-value=12 Score=20.60 Aligned_cols=40 Identities=20% Similarity=0.526 Sum_probs=27.4
Q ss_pred cccccccccccC---CCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 51 ESCCVCLSRLKQ---GDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 51 ~~C~ICl~~~~~---~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..|+.|-..+.. ... ....=+..||..|. +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC---------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC---------EehhcCCCCCC
Confidence 579999998874 111 33345678888773 68889888763
No 178
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.21 E-value=26 Score=19.83 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCCcccccccccccCCCceEEe--CCCCcccHHhHHHHHhc--------CCcccccccccc
Q 048466 48 FEGESCCVCLSRLKQGDEMRVL--PCLHRFHRACVDRWFNE--------WTKTCPLCRFSM 98 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~l--~C~H~f~~~Ci~~wl~~--------~~~~CP~Cr~~~ 98 (128)
.....| ||-.....+..+.-= .|..-||..|+.---.. ....||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 445667 898874443222222 48889999998521110 145799997643
No 179
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=39.34 E-value=20 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.595 Sum_probs=12.1
Q ss_pred CCCCCccccccccc-ccCC
Q 048466 46 NEFEGESCCVCLSR-LKQG 63 (128)
Q Consensus 46 ~~~~~~~C~ICl~~-~~~~ 63 (128)
...+...|.||+.. |.++
T Consensus 5 ~~~d~~~C~iC~KTKFADG 23 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADG 23 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSS
T ss_pred ccCCcchhhhhccceeccC
Confidence 34556789999985 4443
No 180
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=39.16 E-value=15 Score=20.46 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=30.3
Q ss_pred cCCCCCcccccccccccCCCceEEe-CCCCcccHHhHHHHHhc--CCcccccccc
Q 048466 45 ANEFEGESCCVCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE--WTKTCPLCRF 96 (128)
Q Consensus 45 ~~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~--~~~~CP~Cr~ 96 (128)
....+...| ||..... ++.+..- .|..-||..|+.--... ....||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344455678 9988654 3334444 38888999998532111 2347888864
No 181
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=38.59 E-value=13 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.494 Sum_probs=29.1
Q ss_pred CCcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCccccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
....|+.|-..+.... ....-+..||..|+ +|-.|+..+.
T Consensus 60 ~~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRF--LLYAMDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSS--EEEETTEEEETTTS---------BCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcE--EEEeCCcEEccccc---------CcCcCCCccc
Confidence 3467999999987542 23346778998873 6899988886
No 182
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.45 E-value=14 Score=21.52 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=9.3
Q ss_pred cccccccccccCC
Q 048466 51 ESCCVCLSRLKQG 63 (128)
Q Consensus 51 ~~C~ICl~~~~~~ 63 (128)
..||.|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 5788888877643
No 183
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.02 E-value=29 Score=21.12 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=31.5
Q ss_pred cccccccccccC-CCceEEeCCCCcccHHhHHHHHhcCCcccccccccccccc
Q 048466 51 ESCCVCLSRLKQ-GDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGEEM 102 (128)
Q Consensus 51 ~~C~ICl~~~~~-~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 102 (128)
..|..|...+.. +.. ....=+..||..|....+.. ...|..|...|....
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 457777777752 111 22234567888888775543 347999988887643
No 184
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.93 E-value=19 Score=20.15 Aligned_cols=40 Identities=20% Similarity=0.576 Sum_probs=26.3
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..|+.|-..+...+. ....-+..||..|. +|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR-ELFYEDRHFHEGCF---------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCC-BCCCSSCCCBTTTS---------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcE-EEEeCCccccccCC---------eecCCCCccCC
Confidence 479999998873221 11224677888773 68888887763
No 185
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=34.25 E-value=9.7 Score=17.17 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=8.5
Q ss_pred cccccccccccc
Q 048466 90 TCPLCRFSMGEE 101 (128)
Q Consensus 90 ~CP~Cr~~~~~~ 101 (128)
.||+|...++..
T Consensus 8 qcpvcqq~mpaa 19 (29)
T 3vhs_A 8 QCPVCQQMMPAA 19 (29)
T ss_dssp ECTTTCCEEEGG
T ss_pred eChHHHHhCcHH
Confidence 689998766543
No 186
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=33.81 E-value=14 Score=22.68 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=21.9
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRF 96 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~ 96 (128)
..|..|...+..++... ..=+..||..|....+.. .|..+..
T Consensus 37 F~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~---~~~~~~~ 78 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKI---NGGSGGS 78 (123)
T ss_dssp CBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHH---HTCCCCC
T ss_pred CccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhcc---ccCCCCC
Confidence 45666666664433222 223556777777665543 3444433
No 187
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.56 E-value=2.7 Score=24.32 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.3
Q ss_pred CCCCcccHHhHHHH
Q 048466 70 PCLHRFHRACVDRW 83 (128)
Q Consensus 70 ~C~H~f~~~Ci~~w 83 (128)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 58999999997654
No 188
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=32.38 E-value=16 Score=19.51 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=27.1
Q ss_pred cccccccccccCCCceEEeCCCCccc--HHhHHHHHhcCCcccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFH--RACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~--~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..|+.|-+.+..++. ....-+..|| ..| .+|-.|+..+..
T Consensus 3 ~~C~~C~~~I~~~~~-~v~a~~~~wH~~~~C---------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQ-RVTYNNFSWHASTEC---------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSC-EEEETTEEEETTTTT---------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCce-EEEECCCccCCCCCC---------EECCCCCCcCCC
Confidence 468889998875322 2333577888 877 368888887753
No 189
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.74 E-value=46 Score=20.11 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=28.7
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
=..|..|...+... . ....=+..||..|....+ ...|..|...+..
T Consensus 30 CF~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-I-YVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS-E-EEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC-E-EEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 35677777777542 1 222346667888775532 4578888887774
No 190
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.36 E-value=30 Score=20.82 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=16.7
Q ss_pred cccccccccccC-CCceEEeCCCCcccHHhHHHHHh
Q 048466 51 ESCCVCLSRLKQ-GDEMRVLPCLHRFHRACVDRWFN 85 (128)
Q Consensus 51 ~~C~ICl~~~~~-~~~~~~l~C~H~f~~~Ci~~wl~ 85 (128)
..|..|...+.. +... ...=+..||..|...-+.
T Consensus 31 F~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCee-EEECCeeechHHHHHHhC
Confidence 456666666653 1111 112345566766655443
No 191
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.11 E-value=84 Score=20.12 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=25.3
Q ss_pred CcccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 50 GESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 50 ~~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
=..|..|...+.... ...=+..||..|...-+ ...|..|...+..
T Consensus 33 CF~C~~C~~~L~~~~---f~~~g~~yC~~~y~~~f---~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC---FSRGESVYCKDDFFKRF---GTKCAACQLGIPP 77 (169)
T ss_dssp TSBCTTTCCBCCSCC---EESSSCEECHHHHHHHH---SCBCTTTCCBCCT
T ss_pred cCccCCCCCcCCCCC---cccCCeeeecccccccc---cccccccccccCC
Confidence 355667776665431 12345667777765533 3367777666543
No 192
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=27.92 E-value=44 Score=25.92 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCceEEeC-CCCcccHHhHHHHHhc----CCcccccccccc
Q 048466 49 EGESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNE----WTKTCPLCRFSM 98 (128)
Q Consensus 49 ~~~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~----~~~~CP~Cr~~~ 98 (128)
....| +|......+..+.... |..-||..|+.---.. ....||.|+..-
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 33445 9988764334444444 8988999998521111 134799997644
No 193
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=27.47 E-value=9.3 Score=19.92 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=23.5
Q ss_pred cccccccCCCceEEe-CCCCcccHHhHHHHHhc--CCcccccccc
Q 048466 55 VCLSRLKQGDEMRVL-PCLHRFHRACVDRWFNE--WTKTCPLCRF 96 (128)
Q Consensus 55 ICl~~~~~~~~~~~l-~C~H~f~~~Ci~~wl~~--~~~~CP~Cr~ 96 (128)
||..... +..+..- .|..-||..|+.--... ....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5766543 2233333 38888999998532111 2447888864
No 194
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.43 E-value=53 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=25.2
Q ss_pred CCCCCcccccccccccCCCceEEe--CCCCcccHHhHHHHHhc
Q 048466 46 NEFEGESCCVCLSRLKQGDEMRVL--PCLHRFHRACVDRWFNE 86 (128)
Q Consensus 46 ~~~~~~~C~ICl~~~~~~~~~~~l--~C~H~f~~~Ci~~wl~~ 86 (128)
++..+..|.+|-+.- +.+..- .|...||..||...+..
T Consensus 89 ~DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~ 128 (386)
T 2pv0_B 89 DDGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGP 128 (386)
T ss_dssp SSSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCT
T ss_pred CCCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcCh
Confidence 344556788887642 222222 58899999999998854
No 195
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.85 E-value=34 Score=19.78 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=24.6
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCcccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLPCLHRFHRACVDRWFNEWTKTCPLCRFSMGE 100 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~~ 100 (128)
..|..|...+... .. ...=+..||..|..+ .-...|..|...+..
T Consensus 34 F~C~~C~~~L~~~-~~-~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANE-TF-VAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSS-CC-EEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcC-ee-ECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 4566676666432 11 122345566666532 224578888777753
No 196
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=25.90 E-value=33 Score=19.99 Aligned_cols=34 Identities=21% Similarity=0.541 Sum_probs=21.0
Q ss_pred CCCcccccccccccCCCceEE--eCCCCcccHHhHHH
Q 048466 48 FEGESCCVCLSRLKQGDEMRV--LPCLHRFHRACVDR 82 (128)
Q Consensus 48 ~~~~~C~ICl~~~~~~~~~~~--l~C~H~f~~~Ci~~ 82 (128)
.-...|.||.+.- .+..+.- -.|...||..|...
T Consensus 15 R~~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 15 RWKLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred HhcCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 3457899997541 1212221 13888999999764
No 197
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.76 E-value=16 Score=22.06 Aligned_cols=13 Identities=23% Similarity=0.818 Sum_probs=9.0
Q ss_pred Ccccccccccccc
Q 048466 88 TKTCPLCRFSMGE 100 (128)
Q Consensus 88 ~~~CP~Cr~~~~~ 100 (128)
...||+|...+..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3468888777664
No 198
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=25.63 E-value=33 Score=26.34 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred cccccccccccCCCceEEeC-CCCcccHHhHHHHHh----cCCccccccccccc
Q 048466 51 ESCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFN----EWTKTCPLCRFSMG 99 (128)
Q Consensus 51 ~~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~----~~~~~CP~Cr~~~~ 99 (128)
....+|......+..+.... |..-||..|+.---. ...-.||.|+....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 34558888764334444444 888899999952111 12458999977544
No 199
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=24.60 E-value=85 Score=17.37 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=28.8
Q ss_pred ccccccccccCCCceEEeC-CCCcccHHhHHHHHhc----CCcccccccccc
Q 048466 52 SCCVCLSRLKQGDEMRVLP-CLHRFHRACVDRWFNE----WTKTCPLCRFSM 98 (128)
Q Consensus 52 ~C~ICl~~~~~~~~~~~l~-C~H~f~~~Ci~~wl~~----~~~~CP~Cr~~~ 98 (128)
.-.||......+..+..-. |.--||..|+.---.. ....||.|+...
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3448887654333444443 8888999998532111 245799997653
No 200
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=23.96 E-value=3.3 Score=18.18 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=7.0
Q ss_pred ccHHhHHHHHh
Q 048466 75 FHRACVDRWFN 85 (128)
Q Consensus 75 f~~~Ci~~wl~ 85 (128)
||..|-.+|+.
T Consensus 7 fcetcskpwlv 17 (26)
T 1loi_A 7 FCETCSKPWLV 17 (26)
T ss_dssp HHHTSSCTTGG
T ss_pred HHHhcCCchhh
Confidence 66667666654
No 201
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.83 E-value=43 Score=22.03 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=11.8
Q ss_pred CCcccHHhHHHHHhcCCccccccccccc
Q 048466 72 LHRFHRACVDRWFNEWTKTCPLCRFSMG 99 (128)
Q Consensus 72 ~H~f~~~Ci~~wl~~~~~~CP~Cr~~~~ 99 (128)
+..||..|...-+.. ...|..|...+.
T Consensus 54 g~~yC~~cy~~~~~~-~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGN-SGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSC-CEECTTTCCEEC
T ss_pred Ccccccccccccccc-CCccccCCCccc
Confidence 344555554432221 114555555544
No 202
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.77 E-value=30 Score=19.30 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=9.4
Q ss_pred ccccccccccccc
Q 048466 89 KTCPLCRFSMGEE 101 (128)
Q Consensus 89 ~~CP~Cr~~~~~~ 101 (128)
-.||.|+..+...
T Consensus 9 L~CP~ck~~L~~~ 21 (68)
T 2hf1_A 9 LVCPLCKGPLVFD 21 (68)
T ss_dssp CBCTTTCCBCEEE
T ss_pred eECCCCCCcCeEe
Confidence 3699999876543
No 203
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.70 E-value=30 Score=19.27 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=9.6
Q ss_pred ccccccccccccc
Q 048466 89 KTCPLCRFSMGEE 101 (128)
Q Consensus 89 ~~CP~Cr~~~~~~ 101 (128)
-.||.|+..+...
T Consensus 9 L~CP~ck~~L~~~ 21 (68)
T 2jr6_A 9 LVCPVTKGRLEYH 21 (68)
T ss_dssp CBCSSSCCBCEEE
T ss_pred eECCCCCCcCeEe
Confidence 4799999877543
No 204
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.54 E-value=30 Score=19.24 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=10.2
Q ss_pred Cccccccccccccc
Q 048466 88 TKTCPLCRFSMGEE 101 (128)
Q Consensus 88 ~~~CP~Cr~~~~~~ 101 (128)
--.||.|+.++...
T Consensus 10 iL~CP~ck~~L~~~ 23 (67)
T 2jny_A 10 VLACPKDKGPLRYL 23 (67)
T ss_dssp CCBCTTTCCBCEEE
T ss_pred HhCCCCCCCcCeEe
Confidence 44799999877543
No 205
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.34 E-value=72 Score=14.43 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=11.1
Q ss_pred Cccccccccccccccc
Q 048466 88 TKTCPLCRFSMGEEMK 103 (128)
Q Consensus 88 ~~~CP~Cr~~~~~~~~ 103 (128)
+..||.|.+.+-..+.
T Consensus 3 ~~~C~~C~k~Vy~~Ek 18 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEK 18 (31)
T ss_dssp CCBCSSSCSBCCGGGC
T ss_pred CCcCCccCCEEeccee
Confidence 4579999887765443
No 206
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.27 E-value=57 Score=21.41 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=13.5
Q ss_pred eCCCCcccHHhHHHHHhcCCccccccccc
Q 048466 69 LPCLHRFHRACVDRWFNEWTKTCPLCRFS 97 (128)
Q Consensus 69 l~C~H~f~~~Ci~~wl~~~~~~CP~Cr~~ 97 (128)
..||+++-. .. ...||+|..+
T Consensus 142 ~~CG~i~~~-------~~-p~~CP~Cg~~ 162 (170)
T 3pwf_A 142 PICGYTAVD-------EA-PEYCPVCGAP 162 (170)
T ss_dssp TTTCCEEES-------CC-CSBCTTTCCB
T ss_pred CCCCCeeCC-------CC-CCCCCCCCCC
Confidence 348887641 22 4589999753
No 207
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.17 E-value=27 Score=17.30 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=9.9
Q ss_pred ccccccccccccc
Q 048466 89 KTCPLCRFSMGEE 101 (128)
Q Consensus 89 ~~CP~Cr~~~~~~ 101 (128)
..||.|+..++..
T Consensus 10 ~~C~~C~~~i~~~ 22 (39)
T 2i5o_A 10 VPCEKCGSLVPVW 22 (39)
T ss_dssp EECTTTCCEEEGG
T ss_pred cccccccCcCCcc
Confidence 4699998887654
Done!