Query 048467
Match_columns 198
No_of_seqs 139 out of 1414
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:47:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 6.3E-37 1.4E-41 259.3 18.4 177 3-179 16-219 (316)
2 COG0656 ARA1 Aldo/keto reducta 100.0 1.7E-37 3.6E-42 256.0 13.3 149 4-165 18-170 (280)
3 KOG1575 Voltage-gated shaker-l 100.0 1.1E-35 2.3E-40 249.8 17.8 177 2-179 26-230 (336)
4 KOG1577 Aldo/keto reductase fa 100.0 5.9E-35 1.3E-39 241.4 14.4 145 4-162 19-185 (300)
5 TIGR01293 Kv_beta voltage-depe 100.0 1.6E-34 3.5E-39 244.9 16.8 144 3-147 14-161 (317)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 9.8E-34 2.1E-38 242.7 18.6 144 4-147 29-179 (346)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.5E-34 7.6E-39 238.2 11.2 143 2-147 1-148 (283)
8 PRK10376 putative oxidoreducta 100.0 5.6E-33 1.2E-37 232.8 15.9 138 9-147 33-176 (290)
9 PLN02587 L-galactose dehydroge 100.0 6.9E-33 1.5E-37 234.6 16.6 131 13-147 28-163 (314)
10 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.1E-33 1.3E-37 230.1 14.0 130 4-147 7-140 (267)
11 PRK10625 tas putative aldo-ket 100.0 1.3E-32 2.8E-37 235.7 15.1 144 4-147 17-190 (346)
12 cd06660 Aldo_ket_red Aldo-keto 100.0 4.9E-32 1.1E-36 225.5 16.1 131 14-147 27-159 (285)
13 PRK14863 bifunctional regulato 100.0 1.3E-30 2.7E-35 218.8 13.5 136 9-157 26-166 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.4E-30 5.1E-35 215.4 14.6 128 4-147 19-149 (275)
15 COG4989 Predicted oxidoreducta 100.0 9E-30 2E-34 204.0 12.0 135 13-147 28-168 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.3E-28 2.9E-33 198.8 13.2 139 8-147 47-189 (342)
17 COG1453 Predicted oxidoreducta 99.9 3.9E-24 8.6E-29 179.7 15.0 131 9-147 27-163 (391)
18 KOG3023 Glutamate-cysteine lig 97.4 0.00021 4.6E-09 57.9 4.4 53 115-167 156-208 (285)
19 PRK13796 GTPase YqeH; Provisio 88.4 13 0.00028 32.3 12.2 124 13-147 54-180 (365)
20 COG1748 LYS9 Saccharopine dehy 84.7 6.7 0.00014 34.5 8.4 82 15-111 78-159 (389)
21 PF03102 NeuB: NeuB family; I 83.8 9.3 0.0002 31.3 8.5 110 13-141 53-183 (241)
22 PF07555 NAGidase: beta-N-acet 80.5 2.7 5.9E-05 35.7 4.3 101 7-137 6-112 (306)
23 PRK06294 coproporphyrinogen II 77.4 20 0.00042 31.2 8.8 108 78-194 166-290 (370)
24 PRK09058 coproporphyrinogen II 76.8 18 0.00038 32.4 8.6 113 19-141 163-305 (449)
25 PRK07379 coproporphyrinogen II 75.7 21 0.00045 31.4 8.6 60 79-141 179-256 (400)
26 COG4464 CapC Capsular polysacc 75.3 21 0.00045 29.1 7.6 43 12-54 16-61 (254)
27 COG0635 HemN Coproporphyrinoge 74.6 24 0.00051 31.4 8.7 107 78-193 200-322 (416)
28 COG2089 SpsE Sialic acid synth 74.2 57 0.0012 28.1 11.8 115 13-147 87-223 (347)
29 PRK13361 molybdenum cofactor b 72.9 58 0.0013 27.7 10.8 113 12-147 44-176 (329)
30 PRK08446 coproporphyrinogen II 71.7 52 0.0011 28.3 10.0 60 79-140 162-231 (350)
31 TIGR00126 deoC deoxyribose-pho 70.7 53 0.0012 26.3 10.0 124 9-147 11-138 (211)
32 PRK05660 HemN family oxidoredu 70.3 34 0.00073 29.8 8.6 63 78-142 170-245 (378)
33 TIGR00221 nagA N-acetylglucosa 69.9 74 0.0016 27.8 10.6 124 14-147 75-209 (380)
34 cd00405 PRAI Phosphoribosylant 68.1 36 0.00077 26.7 7.6 44 99-146 73-116 (203)
35 PRK05628 coproporphyrinogen II 67.3 72 0.0016 27.6 10.0 157 20-194 109-295 (375)
36 PRK00164 moaA molybdenum cofac 67.1 77 0.0017 26.8 10.4 113 12-147 48-180 (331)
37 PRK08599 coproporphyrinogen II 65.7 47 0.001 28.7 8.6 62 78-141 163-241 (377)
38 PRK13347 coproporphyrinogen II 65.5 31 0.00066 30.9 7.5 113 19-141 152-292 (453)
39 PF00682 HMGL-like: HMGL-like 65.4 67 0.0014 25.6 8.9 123 10-147 8-143 (237)
40 PRK08208 coproporphyrinogen II 64.5 46 0.00099 29.5 8.4 62 78-142 204-277 (430)
41 PLN02321 2-isopropylmalate syn 63.6 89 0.0019 29.5 10.3 32 9-40 233-264 (632)
42 PRK00730 rnpA ribonuclease P; 63.2 38 0.00082 25.4 6.4 63 56-127 46-110 (138)
43 PF01904 DUF72: Protein of unk 62.7 80 0.0017 25.4 10.9 159 30-196 19-200 (230)
44 TIGR03597 GTPase_YqeH ribosome 62.0 69 0.0015 27.7 8.8 124 13-147 48-174 (360)
45 PRK05588 histidinol-phosphatas 61.3 68 0.0015 26.1 8.3 107 14-134 14-143 (255)
46 PRK05799 coproporphyrinogen II 61.1 70 0.0015 27.6 8.8 60 79-141 163-240 (374)
47 TIGR02666 moaA molybdenum cofa 60.1 1.1E+02 0.0023 26.0 11.2 114 11-147 41-175 (334)
48 TIGR00538 hemN oxygen-independ 59.5 52 0.0011 29.4 7.8 113 19-141 151-291 (455)
49 PRK06740 histidinol-phosphatas 57.1 1.3E+02 0.0027 25.9 9.6 26 14-39 59-84 (331)
50 PRK08609 hypothetical protein; 55.3 1.6E+02 0.0034 27.4 10.4 105 17-136 350-466 (570)
51 PRK09249 coproporphyrinogen II 55.1 60 0.0013 29.0 7.5 62 78-141 214-291 (453)
52 PRK06582 coproporphyrinogen II 53.8 78 0.0017 27.7 7.9 62 78-141 173-251 (390)
53 PRK09061 D-glutamate deacylase 53.7 1.8E+02 0.0038 26.5 12.2 115 18-139 171-286 (509)
54 cd04740 DHOD_1B_like Dihydroor 52.1 1.4E+02 0.003 24.8 12.1 120 14-147 100-250 (296)
55 TIGR00126 deoC deoxyribose-pho 51.0 1.3E+02 0.0028 24.1 8.3 76 13-99 129-205 (211)
56 COG0145 HyuA N-methylhydantoin 50.9 1.8E+02 0.0038 27.8 10.1 102 12-115 135-248 (674)
57 COG1751 Uncharacterized conser 50.4 59 0.0013 25.0 5.6 106 14-133 12-128 (186)
58 PRK10550 tRNA-dihydrouridine s 50.3 1.6E+02 0.0034 25.0 13.6 125 9-147 70-213 (312)
59 PF01118 Semialdhyde_dh: Semia 48.8 28 0.00061 24.8 3.7 28 13-40 74-101 (121)
60 PRK02399 hypothetical protein; 48.7 58 0.0013 28.9 6.1 53 86-146 199-251 (406)
61 KOG0059 Lipid exporter ABCA1 a 47.7 1.2E+02 0.0026 29.7 8.7 69 77-147 668-765 (885)
62 PRK04390 rnpA ribonuclease P; 47.5 1.1E+02 0.0023 22.2 6.9 64 56-127 44-110 (120)
63 PRK05283 deoxyribose-phosphate 46.7 1.5E+02 0.0033 24.6 8.0 79 14-101 144-227 (257)
64 KOG2264 Exostosin EXT1L [Signa 46.0 71 0.0015 29.8 6.4 59 41-114 631-691 (907)
65 PF02574 S-methyl_trans: Homoc 45.9 1.8E+02 0.0038 24.3 9.6 94 14-108 39-157 (305)
66 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.5 1.7E+02 0.0038 24.1 13.4 128 9-147 14-155 (275)
67 COG1121 ZnuC ABC-type Mn/Zn tr 45.0 1.6E+02 0.0035 24.4 7.9 61 85-147 117-206 (254)
68 PRK11170 nagA N-acetylglucosam 45.0 2.1E+02 0.0046 24.9 10.6 123 15-147 77-207 (382)
69 COG0135 TrpF Phosphoribosylant 45.0 90 0.002 25.0 6.3 105 9-140 7-112 (208)
70 TIGR02668 moaA_archaeal probab 44.5 1.8E+02 0.004 24.1 10.1 114 11-147 38-170 (302)
71 PRK08195 4-hyroxy-2-oxovalerat 44.4 2.1E+02 0.0045 24.6 12.2 28 9-36 18-45 (337)
72 PLN02389 biotin synthase 44.2 2.2E+02 0.0048 24.9 10.7 101 13-129 116-227 (379)
73 TIGR03822 AblA_like_2 lysine-2 43.9 2E+02 0.0044 24.4 12.3 120 13-147 119-251 (321)
74 COG0218 Predicted GTPase [Gene 43.8 1.7E+02 0.0036 23.4 11.2 100 16-127 91-198 (200)
75 cd01297 D-aminoacylase D-amino 43.7 2.2E+02 0.0048 24.8 10.6 121 16-147 167-296 (415)
76 PRK05301 pyrroloquinoline quin 43.4 1.6E+02 0.0035 25.3 8.2 24 11-34 44-67 (378)
77 cd07943 DRE_TIM_HOA 4-hydroxy- 42.7 1.9E+02 0.004 23.7 11.5 29 8-36 14-42 (263)
78 cd05007 SIS_Etherase N-acetylm 42.7 1.9E+02 0.0041 23.7 11.4 56 89-147 108-163 (257)
79 PRK12570 N-acetylmuramic acid- 41.3 2.2E+02 0.0047 24.0 10.2 57 88-147 116-172 (296)
80 cd00959 DeoC 2-deoxyribose-5-p 41.2 1.7E+02 0.0038 22.9 10.2 121 12-147 13-137 (203)
81 PRK00499 rnpA ribonuclease P; 40.5 1.3E+02 0.0029 21.3 6.6 63 56-127 38-104 (114)
82 cd07948 DRE_TIM_HCS Saccharomy 40.5 2.1E+02 0.0045 23.6 9.6 29 9-37 15-43 (262)
83 PRK03031 rnpA ribonuclease P; 40.5 1.4E+02 0.003 21.5 6.7 64 56-127 47-114 (122)
84 PRK07534 methionine synthase I 40.3 2.4E+02 0.0052 24.2 13.4 95 13-107 42-152 (336)
85 COG2040 MHT1 Homocysteine/sele 40.2 2.3E+02 0.005 24.0 8.4 93 15-108 42-156 (300)
86 COG0825 AccA Acetyl-CoA carbox 39.8 59 0.0013 27.6 4.6 60 8-67 127-197 (317)
87 cd08590 PI-PLCc_Rv2075c_like C 39.4 1.5E+02 0.0032 24.6 7.0 18 116-133 150-167 (267)
88 PRK09485 mmuM homocysteine met 38.0 2.5E+02 0.0053 23.7 13.8 134 14-147 44-232 (304)
89 PF01890 CbiG_C: Cobalamin syn 37.6 1E+02 0.0022 22.3 5.1 63 78-147 11-73 (121)
90 TIGR03699 mena_SCO4550 menaqui 37.2 2.6E+02 0.0056 23.7 9.6 122 13-147 72-216 (340)
91 PRK07094 biotin synthase; Prov 36.7 2.5E+02 0.0055 23.5 8.6 115 13-147 70-201 (323)
92 PRK05414 urocanate hydratase; 36.6 1.3E+02 0.0029 27.6 6.6 81 89-180 201-282 (556)
93 PF05049 IIGP: Interferon-indu 36.0 44 0.00094 29.4 3.4 69 43-111 128-202 (376)
94 PRK04820 rnpA ribonuclease P; 36.0 1.9E+02 0.0041 21.8 6.9 65 56-128 48-115 (145)
95 PRK11267 biopolymer transport 35.3 1.2E+02 0.0027 22.3 5.4 55 79-138 81-135 (141)
96 KOG1579 Homocysteine S-methylt 35.2 2.1E+02 0.0045 24.6 7.2 133 15-147 52-240 (317)
97 KOG0173 20S proteasome, regula 34.9 34 0.00074 28.2 2.4 24 8-31 178-201 (271)
98 PRK11024 colicin uptake protei 34.7 1.2E+02 0.0025 22.4 5.2 54 79-137 85-138 (141)
99 TIGR03569 NeuB_NnaB N-acetylne 34.2 3E+02 0.0066 23.6 10.3 113 13-142 73-206 (329)
100 COG0710 AroD 3-dehydroquinate 33.2 2.7E+02 0.0058 22.7 15.0 130 14-147 12-166 (231)
101 COG2256 MGS1 ATPase related to 33.1 3E+02 0.0065 24.7 8.1 103 20-140 37-143 (436)
102 PRK05283 deoxyribose-phosphate 32.7 2.9E+02 0.0063 22.9 9.6 105 9-126 19-126 (257)
103 cd02930 DCR_FMN 2,4-dienoyl-Co 32.7 3.2E+02 0.0069 23.4 10.2 87 57-147 202-295 (353)
104 PLN02666 5-oxoprolinase 32.1 5.3E+02 0.011 26.7 10.6 103 12-115 172-284 (1275)
105 KOG0259 Tyrosine aminotransfer 31.8 1.7E+02 0.0036 26.1 6.2 61 1-66 64-135 (447)
106 TIGR00035 asp_race aspartate r 31.7 2.5E+02 0.0053 22.4 7.0 62 80-142 15-88 (229)
107 COG3877 Uncharacterized protei 31.6 1.8E+02 0.0038 20.9 5.3 44 78-130 68-111 (122)
108 cd03174 DRE_TIM_metallolyase D 31.4 2.4E+02 0.0053 22.5 7.1 69 78-147 15-84 (265)
109 PF08671 SinI: Anti-repressor 31.3 58 0.0013 17.7 2.2 16 16-31 3-18 (30)
110 PRK13958 N-(5'-phosphoribosyl) 31.0 1.5E+02 0.0033 23.5 5.6 55 91-147 16-71 (207)
111 PRK05339 PEP synthetase regula 30.9 3.1E+02 0.0067 23.0 7.5 74 14-103 14-90 (269)
112 cd05006 SIS_GmhA Phosphoheptos 30.6 85 0.0019 23.8 4.0 47 98-147 100-146 (177)
113 PRK05441 murQ N-acetylmuramic 30.3 3.3E+02 0.0072 22.9 9.6 57 88-147 120-176 (299)
114 TIGR03278 methan_mark_10 putat 29.7 4E+02 0.0087 23.6 9.2 120 11-139 84-206 (404)
115 PLN03233 putative glutamate-tR 29.5 2.8E+02 0.006 25.6 7.6 63 77-147 55-117 (523)
116 cd08620 PI-PLCXDc_like_1 Catal 29.5 2.7E+02 0.0058 23.4 7.0 17 22-38 36-52 (281)
117 PF00749 tRNA-synt_1c: tRNA sy 29.4 2.8E+02 0.0061 23.5 7.3 64 77-147 45-108 (314)
118 PF10171 DUF2366: Uncharacteri 29.0 1.2E+02 0.0027 23.6 4.6 38 100-137 78-115 (173)
119 PHA02820 phospholipase-D-like 28.7 4.2E+02 0.0091 23.6 9.0 79 45-130 220-304 (424)
120 PRK00414 gmhA phosphoheptose i 28.7 2.8E+02 0.0061 21.5 9.7 119 16-147 31-156 (192)
121 PRK00915 2-isopropylmalate syn 28.7 4.6E+02 0.0099 24.0 9.7 162 5-185 138-317 (513)
122 COG0646 MetH Methionine syntha 28.6 3.7E+02 0.0081 23.0 11.0 96 14-109 51-166 (311)
123 COG3411 Ferredoxin [Energy pro 28.5 58 0.0013 21.0 2.2 22 8-30 28-49 (64)
124 cd00739 DHPS DHPS subgroup of 28.5 3.3E+02 0.0072 22.3 9.7 24 116-139 186-209 (257)
125 PRK09462 fur ferric uptake reg 28.4 81 0.0018 23.4 3.4 54 84-137 18-75 (148)
126 PLN02775 Probable dihydrodipic 28.4 2.5E+02 0.0054 23.7 6.6 58 86-147 66-123 (286)
127 TIGR03217 4OH_2_O_val_ald 4-hy 28.3 3.8E+02 0.0083 22.9 12.3 28 9-36 17-44 (333)
128 cd00668 Ile_Leu_Val_MetRS_core 28.1 92 0.002 26.1 4.1 48 81-132 81-131 (312)
129 smart00148 PLCXc Phospholipase 28.1 1.9E+02 0.0042 21.1 5.4 22 19-40 31-52 (135)
130 PF01487 DHquinase_I: Type I 3 28.1 3E+02 0.0066 21.7 11.3 112 13-138 72-185 (224)
131 COG3215 PilZ Tfp pilus assembl 27.7 1.4E+02 0.0031 21.3 4.2 68 24-93 28-105 (117)
132 cd04734 OYE_like_3_FMN Old yel 27.6 3.9E+02 0.0085 22.9 10.0 108 12-136 130-249 (343)
133 PRK07259 dihydroorotate dehydr 27.2 3.6E+02 0.0079 22.3 11.3 122 14-147 102-253 (301)
134 TIGR02090 LEU1_arch isopropylm 26.6 4.2E+02 0.0091 22.9 9.7 29 9-37 15-43 (363)
135 KOG1196 Predicted NAD-dependen 26.6 1.1E+02 0.0023 26.4 4.0 97 18-133 212-310 (343)
136 PRK07535 methyltetrahydrofolat 26.3 3.7E+02 0.0081 22.1 10.4 26 114-139 173-200 (261)
137 PLN03228 methylthioalkylmalate 26.2 5.1E+02 0.011 23.7 10.1 29 12-40 235-263 (503)
138 TIGR01228 hutU urocanate hydra 26.2 1.8E+02 0.0039 26.7 5.6 51 90-147 193-243 (545)
139 COG0419 SbcC ATPase involved i 26.0 1.7E+02 0.0037 28.7 6.0 59 85-145 825-888 (908)
140 PF06819 Arc_PepC: Archaeal Pe 26.0 1.8E+02 0.0038 21.0 4.5 53 79-131 53-105 (110)
141 cd07941 DRE_TIM_LeuA3 Desulfob 26.0 3.8E+02 0.0081 22.1 9.1 82 16-110 119-205 (273)
142 COG2896 MoaA Molybdenum cofact 25.6 4.4E+02 0.0094 22.7 10.2 112 13-147 43-173 (322)
143 PF07021 MetW: Methionine bios 25.6 1.4E+02 0.003 23.8 4.3 106 20-147 5-121 (193)
144 PF01791 DeoC: DeoC/LacD famil 25.3 3.5E+02 0.0076 21.5 7.4 100 13-127 15-120 (236)
145 TIGR01108 oadA oxaloacetate de 25.3 5.6E+02 0.012 23.9 13.3 29 8-36 13-41 (582)
146 PF09012 FeoC: FeoC like trans 25.0 96 0.0021 19.7 2.9 26 113-138 27-52 (69)
147 PRK10200 putative racemase; Pr 25.0 3.6E+02 0.0079 21.6 7.1 65 80-145 15-91 (230)
148 PRK00507 deoxyribose-phosphate 24.9 3.7E+02 0.008 21.6 7.4 77 13-99 133-209 (221)
149 PTZ00372 endonuclease 4-like p 24.8 4E+02 0.0087 23.8 7.6 115 18-136 220-347 (413)
150 PF00072 Response_reg: Respons 24.7 1.9E+02 0.004 19.2 4.6 51 94-147 38-90 (112)
151 PF00388 PI-PLC-X: Phosphatidy 24.7 61 0.0013 23.9 2.2 21 20-40 30-50 (146)
152 TIGR03820 lys_2_3_AblA lysine- 24.6 5.1E+02 0.011 23.1 9.8 118 13-147 138-269 (417)
153 cd03174 DRE_TIM_metallolyase D 24.5 3.7E+02 0.0079 21.5 12.3 29 10-38 13-41 (265)
154 PF13552 DUF4127: Protein of u 24.5 5.4E+02 0.012 23.4 11.4 134 8-147 206-367 (497)
155 PRK07027 cobalamin biosynthesi 24.4 1.8E+02 0.0039 21.1 4.6 61 78-145 13-73 (126)
156 PF06792 UPF0261: Uncharacteri 24.1 2.4E+02 0.0051 25.1 5.9 56 86-147 198-267 (403)
157 PRK05571 ribose-5-phosphate is 24.1 3.2E+02 0.0069 20.6 6.8 69 78-147 8-77 (148)
158 KOG0781 Signal recognition par 23.7 2.5E+02 0.0055 25.9 6.0 115 8-136 446-567 (587)
159 cd00959 DeoC 2-deoxyribose-5-p 23.6 3.6E+02 0.0078 21.0 7.6 70 14-97 129-202 (203)
160 PRK08392 hypothetical protein; 23.6 3.7E+02 0.008 21.1 11.5 104 16-135 14-123 (215)
161 PF02801 Ketoacyl-synt_C: Beta 23.4 1.6E+02 0.0035 20.7 4.1 53 77-129 20-74 (119)
162 TIGR02804 ExbD_2 TonB system t 23.4 2.8E+02 0.0061 19.7 5.7 32 104-136 87-118 (121)
163 PRK15108 biotin synthase; Prov 23.2 4.8E+02 0.01 22.4 10.0 105 13-132 76-188 (345)
164 cd07938 DRE_TIM_HMGL 3-hydroxy 23.2 4.3E+02 0.0094 21.8 9.9 28 10-37 14-41 (274)
165 PRK07328 histidinol-phosphatas 23.2 4.2E+02 0.009 21.6 12.0 110 15-137 17-162 (269)
166 PRK04820 rnpA ribonuclease P; 23.2 3.3E+02 0.0071 20.5 5.9 32 58-97 86-117 (145)
167 PRK08621 galactose-6-phosphate 23.2 3.3E+02 0.0071 20.4 6.3 61 78-142 8-69 (142)
168 COG2390 DeoR Transcriptional r 23.0 2.6E+02 0.0056 24.0 5.9 116 17-151 14-137 (321)
169 PRK00396 rnpA ribonuclease P; 22.9 3.1E+02 0.0068 20.1 6.4 64 56-127 46-112 (130)
170 PRK10508 hypothetical protein; 22.9 2.1E+02 0.0045 24.5 5.3 44 78-126 285-328 (333)
171 KOG4175 Tryptophan synthase al 22.7 4.2E+02 0.0091 21.5 7.9 71 12-96 131-202 (268)
172 PRK01732 rnpA ribonuclease P; 22.5 2.9E+02 0.0064 19.6 6.0 64 56-127 45-111 (114)
173 PRK09413 IS2 repressor TnpA; R 22.5 1.2E+02 0.0027 21.6 3.4 42 11-54 11-52 (121)
174 cd00502 DHQase_I Type I 3-dehy 22.5 3.9E+02 0.0085 21.1 11.6 107 13-136 73-181 (225)
175 cd00818 IleRS_core catalytic c 22.4 1.3E+02 0.0028 25.8 4.0 46 83-131 88-135 (338)
176 PF09862 DUF2089: Protein of u 22.2 2.8E+02 0.006 20.0 5.0 20 78-97 60-79 (113)
177 cd01974 Nitrogenase_MoFe_beta 22.2 5.5E+02 0.012 22.7 10.0 96 36-147 64-183 (435)
178 PLN02907 glutamate-tRNA ligase 22.2 3.8E+02 0.0083 25.8 7.4 64 76-147 256-319 (722)
179 PRK10997 yieM hypothetical pro 22.2 3.3E+02 0.0071 24.9 6.6 63 83-145 398-465 (487)
180 PRK13384 delta-aminolevulinic 22.0 5E+02 0.011 22.3 7.3 123 14-147 59-203 (322)
181 cd00807 GlnRS_core catalytic c 22.0 3.1E+02 0.0067 22.5 5.9 50 78-132 46-95 (238)
182 PRK06256 biotin synthase; Vali 22.0 4E+02 0.0087 22.4 6.9 118 13-147 91-222 (336)
183 KOG0922 DEAH-box RNA helicase 21.9 1.1E+02 0.0024 28.9 3.6 42 90-134 413-454 (674)
184 TIGR00539 hemN_rel putative ox 21.9 3.1E+02 0.0067 23.5 6.3 60 79-141 164-237 (360)
185 cd03770 SR_TndX_transposase Se 21.7 1.7E+02 0.0037 21.3 4.1 51 85-135 54-105 (140)
186 PF14177 YkyB: YkyB-like prote 21.7 85 0.0018 23.4 2.3 19 118-136 30-48 (140)
187 KOG1939 Oxoprolinase [Amino ac 21.6 2E+02 0.0043 28.3 5.2 58 12-69 164-223 (1247)
188 PRK01492 rnpA ribonuclease P; 21.6 3.2E+02 0.0068 19.6 6.7 61 57-125 47-114 (118)
189 PF09639 YjcQ: YjcQ protein; 21.5 72 0.0016 21.7 1.8 24 115-138 25-48 (88)
190 PRK05692 hydroxymethylglutaryl 21.5 2.6E+02 0.0057 23.4 5.6 67 79-147 23-89 (287)
191 TIGR01278 DPOR_BchB light-inde 21.5 6.2E+02 0.013 23.0 8.9 92 44-147 69-184 (511)
192 PF01175 Urocanase: Urocanase; 21.5 2.4E+02 0.0052 26.0 5.5 141 20-180 106-272 (546)
193 PRK01313 rnpA ribonuclease P; 21.4 3.4E+02 0.0073 19.9 6.6 62 56-126 47-113 (129)
194 PRK14340 (dimethylallyl)adenos 21.2 5.9E+02 0.013 22.7 8.7 59 77-139 278-338 (445)
195 PRK01903 rnpA ribonuclease P; 20.9 3.5E+02 0.0076 19.9 6.6 48 79-126 65-128 (133)
196 PF00101 RuBisCO_small: Ribulo 20.9 3.1E+02 0.0067 19.2 6.8 77 9-107 7-84 (99)
197 PTZ00402 glutamyl-tRNA synthet 20.9 5.2E+02 0.011 24.3 7.7 63 77-147 96-159 (601)
198 PRK05718 keto-hydroxyglutarate 20.8 4.4E+02 0.0095 21.0 7.5 54 13-68 24-77 (212)
199 COG0552 FtsY Signal recognitio 20.8 1.5E+02 0.0032 25.8 3.9 32 8-40 201-234 (340)
200 COG1131 CcmA ABC-type multidru 20.7 3.3E+02 0.0071 22.7 6.0 61 84-147 141-204 (293)
201 TIGR02109 PQQ_syn_pqqE coenzym 20.4 5.3E+02 0.012 21.8 9.5 23 12-34 36-58 (358)
202 TIGR03586 PseI pseudaminic aci 20.4 5.6E+02 0.012 22.0 10.1 110 14-142 75-205 (327)
203 PF13602 ADH_zinc_N_2: Zinc-bi 20.3 87 0.0019 21.9 2.2 34 114-147 80-113 (127)
204 COG2130 Putative NADP-dependen 20.3 4.2E+02 0.009 22.9 6.4 101 16-133 206-308 (340)
205 cd00945 Aldolase_Class_I Class 20.2 3.8E+02 0.0082 20.0 9.6 47 14-69 11-58 (201)
206 TIGR01428 HAD_type_II 2-haloal 20.1 1.9E+02 0.004 22.0 4.2 62 84-147 61-126 (198)
207 PRK12558 glutamyl-tRNA synthet 20.1 1.8E+02 0.0038 26.2 4.4 62 78-147 47-108 (445)
208 TIGR03858 LLM_2I7G probable ox 20.0 2.9E+02 0.0064 23.4 5.7 20 79-98 286-305 (337)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=6.3e-37 Score=259.30 Aligned_cols=177 Identities=36% Similarity=0.517 Sum_probs=144.9
Q ss_pred CCccCC-CCCC---CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhcc-CCcEEEEEeeccccCC-CCc-
Q 048467 3 NNIKLS-FFHP---KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARY-RGRVELATKFGIRYED-GQY- 75 (198)
Q Consensus 3 ~~~~~~-~g~~---~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~-R~~~~i~tK~~~~~~~-~~~- 75 (198)
.++|++ +|.. .+.+++.++|++|+++||||||||+.||.|.||+++|++|+... |++++|+||++....+ ...
T Consensus 16 lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvIaTK~g~~~~~~~~~~ 95 (316)
T COG0667 16 LGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVVIATKVGYRPGDPGPNG 95 (316)
T ss_pred eeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEEEEEeeccCCCCCCCCc
Confidence 455553 4442 34557778999999999999999999999999999999999944 8999999999877642 222
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc-C--Cc-c
Q 048467 76 SYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR-H--PS-N 151 (198)
Q Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~-~--p~-~ 151 (198)
..+.+++.|+++++.||++||||||||||+|+||+.+|.++++++|.+|+++|||++||+||++.+++.+++ . |+ .
T Consensus 96 ~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~ 175 (316)
T COG0667 96 VFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDS 175 (316)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCcee
Confidence 257899999999999999999999999999999999999999999999999999999999999999999998 2 33 3
Q ss_pred cccccCcee------eeecc----------CCCCcccccCceee
Q 048467 152 NSCAVGMVL------VVTRC----------GGRDCSYLQGTWHW 179 (198)
Q Consensus 152 ~~~~~~~~~------~~~~~----------~~~~~~~~~g~~~~ 179 (198)
.+..++..+ +...| .+...|+++|++.-
T Consensus 176 ~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 176 LQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred ecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 344444433 11122 56777888998865
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=256.01 Aligned_cols=149 Identities=28% Similarity=0.296 Sum_probs=128.9
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccCCCH
Q 048467 4 NIKLSFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYCGDP 81 (198)
Q Consensus 4 ~~~~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~ 81 (198)
|+| +|... +.+.+.+.+.+|++.|+|+||||.+|| ||+.+|++|++ ++|+++||+||+++.. .+.
T Consensus 18 GlG-t~~~~-~~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~ReelFittKvw~~~--------~~~ 84 (280)
T COG0656 18 GLG-TWQIG-DDEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREELFITTKVWPSD--------LGY 84 (280)
T ss_pred ceE-eeecC-CchhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHeEEEeecCCcc--------CCc
Confidence 554 55552 223389999999999999999999999 99999999999 8899999999999875 678
Q ss_pred HHHHHHHHHHHHhcCCCccceEEeccCCCC--CChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHcCCcccccccCce
Q 048467 82 AYVRAACEARLKRLDVDCIDLYYQHRIDTK--VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRARHPSNNSCAVGMV 159 (198)
Q Consensus 82 ~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~~p~~~~~~~~~~ 159 (198)
+.+.+++++||++||+||+|||++|||.+. ..+.++|++|++++++||||+||||||+.+++++++.-.-..|.+||+
T Consensus 85 ~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQI 164 (280)
T COG0656 85 DETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQI 164 (280)
T ss_pred chHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEE
Confidence 999999999999999999999999999763 236799999999999999999999999999999999334445677777
Q ss_pred eeeecc
Q 048467 160 LVVTRC 165 (198)
Q Consensus 160 ~~~~~~ 165 (198)
+++..+
T Consensus 165 e~hp~~ 170 (280)
T COG0656 165 EYHPYL 170 (280)
T ss_pred EeccCC
Confidence 776555
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-35 Score=249.76 Aligned_cols=177 Identities=34% Similarity=0.488 Sum_probs=149.1
Q ss_pred CCCccC----CCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCc
Q 048467 2 PNNIKL----SFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQY 75 (198)
Q Consensus 2 p~~~~~----~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~ 75 (198)
|.++|. +||...++++|+++++.|+++|+||||||++||.|.||.++|++|++ .+|++++|+||++... .+..
T Consensus 26 ~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~~-~~~~ 104 (336)
T KOG1575|consen 26 PLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFDY-GGET 104 (336)
T ss_pred ceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEeccC-CCcC
Confidence 445553 46776799999999999999999999999999999999999999999 6799999999999776 2222
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc--CC--cc
Q 048467 76 SYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR--HP--SN 151 (198)
Q Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~--~p--~~ 151 (198)
....+...+.+.++.|+++||++||||||+||+|+.+|+++++++|.+++++|||++||+|++++++|.+++ .| ++
T Consensus 105 ~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~ 184 (336)
T KOG1575|consen 105 PRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIV 184 (336)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCce
Confidence 466788999999999999999999999999999999999999999999999999999999999999999998 33 33
Q ss_pred c-ccccCceeee-----------------eccCCCCcccccCceee
Q 048467 152 N-SCAVGMVLVV-----------------TRCGGRDCSYLQGTWHW 179 (198)
Q Consensus 152 ~-~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~ 179 (198)
+ +.+++..... ....+...|+++|++..
T Consensus 185 s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~ 230 (336)
T KOG1575|consen 185 AVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKL 230 (336)
T ss_pred EeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccc
Confidence 3 3333221111 12278888999999854
No 4
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.9e-35 Score=241.41 Aligned_cols=145 Identities=28% Similarity=0.352 Sum_probs=126.4
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh------ccCCcEEEEEeeccccCCCCccc
Q 048467 4 NIKLSFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA------RYRGRVELATKFGIRYEDGQYSY 77 (198)
Q Consensus 4 ~~~~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~------~~R~~~~i~tK~~~~~~~~~~~~ 77 (198)
|+| +|. .++.++.++++.|++.|+||||||..|+ ||+.+|++|++ ++|+++||+||+|+..
T Consensus 19 GlG-Tw~--~~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~RediFiTSKlw~~~------- 85 (300)
T KOG1577|consen 19 GLG-TWQ--SPPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKREDIFITSKLWPTD------- 85 (300)
T ss_pred eeE-ecc--cChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchhhheeeeccCccc-------
Confidence 565 454 3578899999999999999999999999 99999999996 6899999999999865
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCC----------------CChHHHHHHHHHHHHcCcCcEEEecCCCHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTK----------------VPIEVTIGELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~----------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
+.++.++.++++||++||+||+|||++|||-.. .+..++|++|+++++.|++|+||||||+..
T Consensus 86 -~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~ 164 (300)
T KOG1577|consen 86 -HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIK 164 (300)
T ss_pred -cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHH
Confidence 778999999999999999999999999999653 346789999999999999999999999999
Q ss_pred HHHHHcCCcccccccCceeee
Q 048467 142 TIRRARHPSNNSCAVGMVLVV 162 (198)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~ 162 (198)
++++++.-.-..|.+||++.+
T Consensus 165 ~le~ll~~~ki~P~vnQvE~H 185 (300)
T KOG1577|consen 165 QLEELLNLAKIKPAVNQVECH 185 (300)
T ss_pred HHHHHHhcCCCCCccceeecc
Confidence 999999222555566666554
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.6e-34 Score=244.88 Aligned_cols=144 Identities=22% Similarity=0.296 Sum_probs=125.0
Q ss_pred CCccCC--CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccC
Q 048467 3 NNIKLS--FFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYC 78 (198)
Q Consensus 3 ~~~~~~--~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~ 78 (198)
.++|.+ +|.+.+.+++.++|+.|+++|||+||||++||.|.||+++|++|+. .+|++++|+||+++... .....+
T Consensus 14 lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK~~~~~~-~~~~~~ 92 (317)
T TIGR01293 14 LGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTKIFWGGK-AETERG 92 (317)
T ss_pred eeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEeeeccCCC-CCCCCC
Confidence 356543 4555788999999999999999999999999999999999999986 36999999999854211 111134
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
.+++.++++++.||++||+||||+|++|+|++..+++++|++|++|+++||||+||||||+.++++++.
T Consensus 93 ~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~ 161 (317)
T TIGR01293 93 LSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAY 161 (317)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHH
Confidence 689999999999999999999999999999998899999999999999999999999999999988764
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=9.8e-34 Score=242.74 Aligned_cols=144 Identities=31% Similarity=0.542 Sum_probs=123.5
Q ss_pred CccCC--CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCC--CChhHHHHHHhhh---ccCCcEEEEEeeccccCCCCcc
Q 048467 4 NIKLS--FFHPKPKSDTIALIHHAIDSGITILDTSDAYGP--HTNEILPGKALKA---RYRGRVELATKFGIRYEDGQYS 76 (198)
Q Consensus 4 ~~~~~--~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~~G~~l~~---~~R~~~~i~tK~~~~~~~~~~~ 76 (198)
++|.+ ||...+.+++.++|+.|++.|||+||||+.||+ |.+|+++|++|++ ..|++++|+||++....++...
T Consensus 29 glG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK~g~~~~~~~~~ 108 (346)
T PRK09912 29 SLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYG 108 (346)
T ss_pred cccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEEecccCCCCcCC
Confidence 56543 565456678899999999999999999999995 8999999999986 2599999999997531111122
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 77 YCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
...+++.++++++.||++||+||||+|++|+|++..++++++++|++|+++|||++||||||++++++++.
T Consensus 109 ~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~ 179 (346)
T PRK09912 109 SGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMV 179 (346)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHH
Confidence 34679999999999999999999999999999988899999999999999999999999999999887654
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.5e-34 Score=238.23 Aligned_cols=143 Identities=30% Similarity=0.414 Sum_probs=124.9
Q ss_pred CCCccCC-CCC-CCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCccc
Q 048467 2 PNNIKLS-FFH-PKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSY 77 (198)
Q Consensus 2 p~~~~~~-~g~-~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~ 77 (198)
|.++|++ +|. ..+.+++.++|+.|++.|||+||||+.||+|.+|+.+|++|++ .+|++++|+||+. .......
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~---~~~~~~~ 77 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVY---GDGKPEP 77 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEE---SSSSTGG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccc---ccccccc
Confidence 4566653 443 7899999999999999999999999999888999999999999 8899999999992 1223345
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCC-hHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVP-IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
..+++.+++++++||++||+||||+|++|+|+...+ ..++|++|++|+++|+||+||||||++++++++.
T Consensus 78 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 148 (283)
T PF00248_consen 78 DYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAAL 148 (283)
T ss_dssp GSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHH
T ss_pred cccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccc
Confidence 689999999999999999999999999999999888 8999999999999999999999999999999993
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.6e-33 Score=232.81 Aligned_cols=138 Identities=31% Similarity=0.508 Sum_probs=119.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCC-CCcccCCCHHHHHHH
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYED-GQYSYCGDPAYVRAA 87 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~-~~~~~~~~~~~i~~~ 87 (198)
||.+.+.+++.++++.|++.|||+||||++||+|.+|+++|++++. .|++++|+||++....+ +.+....+++.++++
T Consensus 33 ~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~ 111 (290)
T PRK10376 33 FGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRA 111 (290)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEEeeecccCCCCCccCCCCCHHHHHHH
Confidence 5655678889999999999999999999999999999999999975 69999999998754321 112345789999999
Q ss_pred HHHHHHhcCCCccceEEeccCCC-----CCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 88 CEARLKRLDVDCIDLYYQHRIDT-----KVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p~~-----~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
++.||++|++||||+|++|+++. ..+++++|++|++|+++||||+||||||++++++++.
T Consensus 112 ~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 176 (290)
T PRK10376 112 VHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEAR 176 (290)
T ss_pred HHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHH
Confidence 99999999999999999887421 2347889999999999999999999999999999887
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.9e-33 Score=234.55 Aligned_cols=131 Identities=32% Similarity=0.431 Sum_probs=116.8
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEA 90 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (198)
.+.+++.+++++|++.|+|+||||+.||.|.+|+.+|++|++ .+|++++|+||+++... + ...+++.++++++.
T Consensus 28 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~TK~~~~~~-~---~~~~~~~i~~~~e~ 103 (314)
T PLN02587 28 VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVSTKCGRYGE-G---FDFSAERVTKSVDE 103 (314)
T ss_pred CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEEEeccccCCC-C---CCCCHHHHHHHHHH
Confidence 678899999999999999999999999999999999999997 46999999999975321 1 24689999999999
Q ss_pred HHHhcCCCccceEEeccCCCC---CChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 91 RLKRLDVDCIDLYYQHRIDTK---VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 91 sL~~L~~~~lDl~~lh~p~~~---~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
||++||+||||+|++|+|+.. .+++++|++|++|+++||||+||+|||++++++.+.
T Consensus 104 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~ 163 (314)
T PLN02587 104 SLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVL 163 (314)
T ss_pred HHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHH
Confidence 999999999999999999742 346789999999999999999999999998877665
No 10
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.1e-33 Score=230.08 Aligned_cols=130 Identities=22% Similarity=0.292 Sum_probs=115.7
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccCCCH
Q 048467 4 NIKLSFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYCGDP 81 (198)
Q Consensus 4 ~~~~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~ 81 (198)
|+|+ |. .+.+++.++++.|++.|+|+||||+.|| +|+.+|++|+. .+|+++||+||+++. ..++
T Consensus 7 glGt-~~--~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~--------~~~~ 72 (267)
T PRK11172 7 GLGT-FR--LKDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID--------NLAK 72 (267)
T ss_pred eeEc-cc--cChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--------CCCH
Confidence 5654 42 2457799999999999999999999999 79999999986 469999999998642 3678
Q ss_pred HHHHHHHHHHHHhcCCCccceEEeccCCCC--CChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 82 AYVRAACEARLKRLDVDCIDLYYQHRIDTK--VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 82 ~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+.+++++++||++||+||||+|++|+|++. .+.+++|++|++|+++||||+||||||+.+++++++
T Consensus 73 ~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 73 DKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 999999999999999999999999999763 567899999999999999999999999999999887
No 11
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=235.75 Aligned_cols=144 Identities=26% Similarity=0.358 Sum_probs=121.2
Q ss_pred CccCC-CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCC-------CCChhHHHHHHhhh-ccCCcEEEEEeeccccCC-C
Q 048467 4 NIKLS-FFHPKPKSDTIALIHHAIDSGITILDTSDAYG-------PHTNEILPGKALKA-RYRGRVELATKFGIRYED-G 73 (198)
Q Consensus 4 ~~~~~-~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~g~sE~~~G~~l~~-~~R~~~~i~tK~~~~~~~-~ 73 (198)
++|.+ ||...+.+++.++++.|+++|+||||||+.|| .|.||+++|++|+. ..|++++|+||++..... +
T Consensus 17 glGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~~v~i~TK~~~~~~~~~ 96 (346)
T PRK10625 17 GLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSREKLIIASKVSGPSRNND 96 (346)
T ss_pred eEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcceEEEEcccccCCcCCC
Confidence 55543 56656788999999999999999999999998 48899999999986 459999999999642211 0
Q ss_pred C---cccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCC-----------------CCChHHHHHHHHHHHHcCcCcEE
Q 048467 74 Q---YSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDT-----------------KVPIEVTIGELKKLVEEGKIKYI 133 (198)
Q Consensus 74 ~---~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~-----------------~~~~~~~~~~l~~l~~~G~ir~i 133 (198)
. .....+++.++++++.||++||+||||||++|+|++ .++++++|++|++|+++|||++|
T Consensus 97 ~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~i 176 (346)
T PRK10625 97 KGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYI 176 (346)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 0 012468999999999999999999999999999975 34678999999999999999999
Q ss_pred EecCCCHHHHHHHc
Q 048467 134 GLSEASASTIRRAR 147 (198)
Q Consensus 134 GvSn~~~~~~~~~~ 147 (198)
|||||+..++++++
T Consensus 177 GvSn~~~~~l~~~~ 190 (346)
T PRK10625 177 GVSNETAFGVMRYL 190 (346)
T ss_pred EecCCCHHHHHHHH
Confidence 99999999887754
No 12
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=4.9e-32 Score=225.54 Aligned_cols=131 Identities=44% Similarity=0.609 Sum_probs=120.3
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhcc-CCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHH
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARY-RGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARL 92 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 92 (198)
+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+..+ |++++|+||+++..... ...+++.+++++++||
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~---~~~~~~~~~~~l~~sL 103 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDG---RDLSPEHIRRAVEESL 103 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCC---CCCCHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999955 99999999998654211 3468999999999999
Q ss_pred HhcCCCccceEEeccCCCCCC-hHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 93 KRLDVDCIDLYYQHRIDTKVP-IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 93 ~~L~~~~lDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
++|+++|+|++++|+|+...+ ..++|++|++++++|+|++||||||+++++++++
T Consensus 104 ~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 159 (285)
T cd06660 104 KRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEAL 159 (285)
T ss_pred HHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHH
Confidence 999999999999999988766 7899999999999999999999999999998887
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.97 E-value=1.3e-30 Score=218.80 Aligned_cols=136 Identities=22% Similarity=0.308 Sum_probs=114.5
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
||. .+++++.++++.|++.||||||||+.|| .||+++|++|+...+.+++|+||.. ..+++.+++++
T Consensus 26 ~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~tk~~----------~~~~~~i~~~~ 92 (292)
T PRK14863 26 RGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLSTVRA----------DRGPDFVEAEA 92 (292)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeecccccc----------cccHHHHHHHH
Confidence 443 6889999999999999999999999998 7999999999863346788999842 24588999999
Q ss_pred HHHHHhcCCCccceEEeccCCCC-CCh-HHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc---CCcccccccC
Q 048467 89 EARLKRLDVDCIDLYYQHRIDTK-VPI-EVTIGELKKLVEEGKIKYIGLSEASASTIRRAR---HPSNNSCAVG 157 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~p~~~-~~~-~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~---~p~~~~~~~~ 157 (198)
++||++||+||||+|++|+|++. .+. +++|++|++|+++||||+||||||+++++.++. .|.+.+..++
T Consensus 93 e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n 166 (292)
T PRK14863 93 RASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARRFKPDILQAPAS 166 (292)
T ss_pred HHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhcCCCCEEEecCC
Confidence 99999999999999999999763 343 578999999999999999999999999888766 3444444444
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.97 E-value=2.4e-30 Score=215.45 Aligned_cols=128 Identities=30% Similarity=0.374 Sum_probs=114.1
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccCCCH
Q 048467 4 NIKLSFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYCGDP 81 (198)
Q Consensus 4 ~~~~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~ 81 (198)
++| +|. .+.+++.++++.|++.|+|+||||+.|| +|+.+|++|+. .+|++++|+||++. .++
T Consensus 19 glG-~~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~tK~~~----------~~~ 82 (275)
T PRK11565 19 GLG-VWQ--ASNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFITTKLWN----------DDH 82 (275)
T ss_pred ceE-Ccc--CCHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEEEEecC----------cch
Confidence 444 454 3568899999999999999999999999 89999999997 46899999999863 246
Q ss_pred HHHHHHHHHHHHhcCCCccceEEeccCCCCC-ChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 82 AYVRAACEARLKRLDVDCIDLYYQHRIDTKV-PIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 82 ~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+.++++++.||++|++||||+|++|+|++.. +..++|++|++|+++|+||+||||||+++++++++
T Consensus 83 ~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 149 (275)
T PRK11565 83 KRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLI 149 (275)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHH
Confidence 7899999999999999999999999998754 46899999999999999999999999999999987
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.96 E-value=9e-30 Score=204.03 Aligned_cols=135 Identities=27% Similarity=0.405 Sum_probs=123.6
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCC----CcccCCCHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDG----QYSYCGDPAYVRA 86 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~----~~~~~~~~~~i~~ 86 (198)
++..+...++..|++.||++||-|+.||.+++|+++|.+|+. ..|+++.|.||.+...... -...+.+.++|..
T Consensus 28 ~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~ 107 (298)
T COG4989 28 MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIK 107 (298)
T ss_pred CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEeeeccccccccccccccccccCcHHHHHH
Confidence 456789999999999999999999999999999999999998 4599999999998755311 2347889999999
Q ss_pred HHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 87 ACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 87 ~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
|++.||++|++||+|++++|+||+..+.+|+.+|+..|+++||||+.|||||++.|++-+-
T Consensus 108 SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~ 168 (298)
T COG4989 108 SVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQ 168 (298)
T ss_pred HHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987766
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.96 E-value=1.3e-28 Score=198.84 Aligned_cols=139 Identities=28% Similarity=0.369 Sum_probs=126.1
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHH
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAA 87 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 87 (198)
.||- .+.++....+..|++.|||+||||+.||.+.+|.++|.++++.||+..+|+||++...-+....++++.+.++++
T Consensus 47 ~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreS 125 (342)
T KOG1576|consen 47 LFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYIATKVGRYELDYANMFDFSADKVRES 125 (342)
T ss_pred hcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhheeeeeeeeecccCccccccchHHHHHHH
Confidence 4666 677888888888999999999999999999999999999999999999999999976655556688999999999
Q ss_pred HHHHHHhcCCCccceEEeccCCCC----CChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 88 CEARLKRLDVDCIDLYYQHRIDTK----VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p~~~----~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+++||++|+++|+|++++|..+.. ..+.|++.+|++++++||+|+||||.++.+-+.+..
T Consensus 126 v~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~a 189 (342)
T KOG1576|consen 126 VKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECA 189 (342)
T ss_pred HHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHH
Confidence 999999999999999999997643 335799999999999999999999999999988887
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.92 E-value=3.9e-24 Score=179.73 Aligned_cols=131 Identities=30% Similarity=0.349 Sum_probs=114.9
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
|....+.+.+.++|++|++.|||+||||..|..|.||..+|++|+...|+++.++||+.... --+++.+++-+
T Consensus 27 ~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~-------~~~~edm~r~f 99 (391)
T COG1453 27 EQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWP-------VKDREDMERIF 99 (391)
T ss_pred cCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCcc-------ccCHHHHHHHH
Confidence 44446889999999999999999999999997779999999999998899999999998643 35689999999
Q ss_pred HHHHHhcCCCccceEEeccCCCCCChH-----HHHHHHHHHHHcCcCcEEEecCCC-HHHHHHHc
Q 048467 89 EARLKRLDVDCIDLYYQHRIDTKVPIE-----VTIGELKKLVEEGKIKYIGLSEAS-ASTIRRAR 147 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~p~~~~~~~-----~~~~~l~~l~~~G~ir~iGvSn~~-~~~~~~~~ 147 (198)
+++|++|++||+|+|+||..+. ..++ ..++.+++++.+||||++|+|.|+ .+.+.+++
T Consensus 100 neqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv 163 (391)
T COG1453 100 NEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIV 163 (391)
T ss_pred HHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHH
Confidence 9999999999999999999876 3232 268999999999999999999995 55677766
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00021 Score=57.93 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHcCCcccccccCceeeeeccCC
Q 048467 115 EVTIGELKKLVEEGKIKYIGLSEASASTIRRARHPSNNSCAVGMVLVVTRCGG 167 (198)
Q Consensus 115 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 167 (198)
.+.|+.||+++.+|+|-.||||.|+..++++++.-.-..|..+|+++..+|-.
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv 208 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV 208 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC
Confidence 45799999999999999999999999999999955566678888999888843
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=88.42 E-value=13 Score=32.35 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHHHcC---CCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSG---ITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACE 89 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 89 (198)
.++++..++++...+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|.-... .....+.+.+-++
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl~------~~~~~~~i~~~l~ 123 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLLP------KSVKKNKVKNWLR 123 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhCC------CccCHHHHHHHHH
Confidence 45666777777776655 44678666443 22233333332 445688999986532 1234556666666
Q ss_pred HHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 90 ARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 90 ~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
...+.+|....+++.+..-. ...+++.++.+.++.+.+.+--+|.+|.....+--.+
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 66777786656777776554 3457888888888877889999999999877655554
No 20
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.66 E-value=6.7 Score=34.54 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHh
Q 048467 15 KSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKR 94 (198)
Q Consensus 15 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 94 (198)
......++++|++.|++++|||.+.- ....+.+. ..+..+.+..-.+..+ ..+---....++.-.+
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~---a~~Agit~v~~~G~dP-------Gi~nv~a~~a~~~~~~- 143 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEE---AKKAGITAVLGCGFDP-------GITNVLAAYAAKELFD- 143 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHH---HHHcCeEEEcccCcCc-------chHHHHHHHHHHHhhc-
Confidence 34456899999999999999998665 21111111 2234555666565443 2433333444333333
Q ss_pred cCCCccceEEeccCCCC
Q 048467 95 LDVDCIDLYYQHRIDTK 111 (198)
Q Consensus 95 L~~~~lDl~~lh~p~~~ 111 (198)
.++++|+|..+.|++.
T Consensus 144 -~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 -EIESIDIYVGGLGEHG 159 (389)
T ss_pred -cccEEEEEEecCCCCC
Confidence 5789999999999775
No 21
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=83.76 E-value=9.3 Score=31.34 Aligned_cols=110 Identities=17% Similarity=0.117 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHH-----------------hhh--ccCCcEEEEEeeccccCCC
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKA-----------------LKA--RYRGRVELATKFGIRYEDG 73 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~-----------------l~~--~~R~~~~i~tK~~~~~~~~ 73 (198)
.+.++..++.+++-+.|+.||=|.-.-. +-..+-+. |+. .....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC-------
Confidence 4778899999999999999998875332 22222111 111 123345555543
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCC-CCChHH-HHHHHHHHHHcCcCcEEEecCCCHH
Q 048467 74 QYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDT-KVPIEV-TIGELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~-~~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
.+.+.|+++++...+.- .-++.++|.... .++.++ .++.|..|++.=- --||.|.|+..
T Consensus 123 -----stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred -----CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 34677777777664443 478999999843 345544 4777777775433 56899999865
No 22
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=80.47 E-value=2.7 Score=35.74 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=55.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHH
Q 048467 7 LSFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRA 86 (198)
Q Consensus 7 ~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 86 (198)
|.||.|.+.++-.++++..-+.|.|.+ .|+ |.+|.+...|+-- .++.+.+ +
T Consensus 6 GFYG~PWs~e~R~~l~~f~~~~kmN~Y----iYA---------------PKdDpyhr~~Wre---------~Yp~~el-~ 56 (306)
T PF07555_consen 6 GFYGRPWSHEDRLDLIRFLGRYKMNTY----IYA---------------PKDDPYHRSKWRE---------PYPEEEL-A 56 (306)
T ss_dssp -SSSS---HHHHHHHHHHHHHTT--EE----EE-----------------TT-TTTTTTTTS------------HHHH-H
T ss_pred CcCCCCCCHHHHHHHHHHHHHcCCceE----EEC---------------CCCChHHHhhhcc---------cCCHHHH-H
Confidence 679999999999999999999999987 677 2222222223321 1333333 4
Q ss_pred HHHHHHHhcCCCccceEEeccCCCCC------ChHHHHHHHHHHHHcCcCcEEEecC
Q 048467 87 ACEARLKRLDVDCIDLYYQHRIDTKV------PIEVTIGELKKLVEEGKIKYIGLSE 137 (198)
Q Consensus 87 ~~~~sL~~L~~~~lDl~~lh~p~~~~------~~~~~~~~l~~l~~~G~ir~iGvSn 137 (198)
.+++..+.-....|+.++-=.|..+. +++...+.+++|.+.| ||.+||.-
T Consensus 57 ~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Failf 112 (306)
T PF07555_consen 57 ELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAILF 112 (306)
T ss_dssp HHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-
T ss_pred HHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEee
Confidence 45555555455667777776775543 3455678888888886 67788753
No 23
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=77.45 E-value=20 Score=31.19 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEecc-CCC-----------CCChH----HH-HHHHHHHHHcCcCcEEEecCCCH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHR-IDT-----------KVPIE----VT-IGELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~-p~~-----------~~~~~----~~-~~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
..+.+.++++++..++ |+.+++.+|.+.- |.. ..+.+ +. ..+.+.|.+.|.. .+++|||..
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT-RYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC-eeeeeeeeC
Confidence 3678888888888764 7888888877763 210 01111 12 2355667788874 589999975
Q ss_pred HHHHHHcCCcccccccCceeeeeccCCCCcccccCceeeeecccchhhHHHHHH
Q 048467 141 STIRRARHPSNNSCAVGMVLVVTRCGGRDCSYLQGTWHWNCCVQSSRMWLSFIR 194 (198)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~ 194 (198)
..-+..+. .......+++-+ |+-.++++.|... ....+-..|.+-++
T Consensus 244 ~~~~~~hN-~~yw~~~~~lg~----G~gA~s~~~~~r~--~n~~~l~~Y~~~~~ 290 (370)
T PRK06294 244 PQAQSKHN-TYYWTDRPFLGL----GVSASQYLHGIRS--KNLSRISHYLRALR 290 (370)
T ss_pred CCchhhhh-hhhccCCCEEEE----cCCcceecCCEEE--EcCCCHHHHHHHHH
Confidence 43332221 111111222333 6666666665432 22333444665543
No 24
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=76.84 E-value=18 Score=32.37 Aligned_cols=113 Identities=15% Similarity=0.074 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCeEeCCCCCC---------CCChhHHHHHHhhhcc---CCcEEEEEeeccccCCCCcccCCCHHHHHH
Q 048467 19 IALIHHAIDSGITILDTSDAYG---------PHTNEILPGKALKARY---RGRVELATKFGIRYEDGQYSYCGDPAYVRA 86 (198)
Q Consensus 19 ~~~l~~A~~~Gi~~~DtA~~Yg---------~g~sE~~~G~~l~~~~---R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 86 (198)
.+.++...++|+|.|--.-.=. .+.+-+.+-++++... ...+.+--=++. +..+.+.+++
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl--------PgqT~e~~~~ 234 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGL--------PGQTPEIWQQ 234 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC--------CCCCHHHHHH
Confidence 3556777778999876654433 1122222233343311 122333322232 2478888999
Q ss_pred HHHHHHHhcCCCccceEEeccCCCC------------C--ChHH---H-HHHHHHHHHcCcCcEEEecCCCHH
Q 048467 87 ACEARLKRLDVDCIDLYYQHRIDTK------------V--PIEV---T-IGELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 87 ~~~~sL~~L~~~~lDl~~lh~p~~~------------~--~~~~---~-~~~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
+++..++ |+.+.+++|.+.-.... . +.++ . -.+.+.|.+.|. +.+++|||...
T Consensus 235 ~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~far~ 305 (449)
T PRK09058 235 DLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWART 305 (449)
T ss_pred HHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeeecC
Confidence 9888765 89999999887642110 0 1121 2 245566778887 56899999653
No 25
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=75.75 E-value=21 Score=31.39 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCC-------------C-hHH---HH-HHHHHHHHcCcCcEEEecCCCH
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKV-------------P-IEV---TI-GELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~-------------~-~~~---~~-~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
.+.+.++++++..+ +|+.+++.++.+.-- +.+ + .++ .+ .+.+.|.+.|.. .+++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~-pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLE-PGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceec-CCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 57777888777665 477888887766521 111 1 111 22 366678888875 689999974
Q ss_pred H
Q 048467 141 S 141 (198)
Q Consensus 141 ~ 141 (198)
.
T Consensus 256 ~ 256 (400)
T PRK07379 256 P 256 (400)
T ss_pred C
Confidence 4
No 26
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=75.26 E-value=21 Score=29.07 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCCCCCCCC---ChhHHHHHHhhh
Q 048467 12 PKPKSDTIALIHHAIDSGITILDTSDAYGPH---TNEILPGKALKA 54 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g---~sE~~~G~~l~~ 54 (198)
+.+.++..++++.|.+.|++-+=..++|-+| ..+..+.+.+.+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 4678999999999999999977776677665 344455554443
No 27
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=74.64 E-value=24 Score=31.36 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCC----------C-CCh-H---HHHH-HHHHHHHcCcCcEEEecCCCHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDT----------K-VPI-E---VTIG-ELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~----------~-~~~-~---~~~~-~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
..+.+.+.+.++..++ |+.|+|.+|.+--... . .|. + +.++ +.+.|.+.|. +.+|+|||.-.
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~~ 277 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAKP 277 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcCc
Confidence 4778888888888765 6689999987644211 0 111 1 3444 4445566777 89999999873
Q ss_pred HHHHHcCCcccccccCceeeeeccCCCCcccccCceeeeecccchhhHHHHH
Q 048467 142 TIRRARHPSNNSCAVGMVLVVTRCGGRDCSYLQGTWHWNCCVQSSRMWLSFI 193 (198)
Q Consensus 142 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~ 193 (198)
.-+..+. +.....-+.+- +|...+|.+.+.+..+.. ....|++.+
T Consensus 278 ~~e~~hN-l~yw~~~~~lG----iG~gA~g~~~~~~~~n~~--~~~~y~~~~ 322 (416)
T COG0635 278 GGECRHN-LQYWETKDYLG----IGAGAHGRIGGTRYQNKK--NLKTYLEAV 322 (416)
T ss_pred chHHHhh-hccccCCCeEE----ECCCceeeeccEEEEccC--CHHHHHHHH
Confidence 3222220 00000002222 377778888885544332 233355444
No 28
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=74.20 E-value=57 Score=28.15 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHH--------------------HHhhhccCCcEEEEEeeccccCC
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPG--------------------KALKARYRGRVELATKFGIRYED 72 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G--------------------~~l~~~~R~~~~i~tK~~~~~~~ 72 (198)
++.+...++.++|-+.|+-+|=|--.+. +-.++- +.+.+ .-+.++++|=..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~---svd~l~~~~~~ayKIaS~E~~~~plik~iA~-~~kPiIlSTGma----- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLT---AVDLLESLNPPAYKIASGEINDLPLIKYIAK-KGKPIILSTGMA----- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHH---HHHHHHhcCCCeEEecCccccChHHHHHHHh-cCCCEEEEcccc-----
Confidence 4667788999999999999987765444 111111 11111 233566666553
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCCCccceEEeccCC-CCCChHH-HHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 73 GQYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRID-TKVPIEV-TIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 73 ~~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~-~~~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+-+.+.++++...++=. . |+.++|... +..|.++ .+.+|..|.+.= -.-||+|.|+..-+.-+.
T Consensus 158 -------~~~ei~~av~~~r~~g~-~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 158 -------TIEEIEEAVAILRENGN-P--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred -------cHHHHHHHHHHHHhcCC-C--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 35678888876655543 2 999999975 3345554 366666666653 445899999987444333
No 29
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=72.86 E-value=58 Score=27.65 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHH----HHhhhc-cC---CcEEEEEeeccccCCCCcccCCCHHH
Q 048467 12 PKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPG----KALKAR-YR---GRVELATKFGIRYEDGQYSYCGDPAY 83 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G----~~l~~~-~R---~~~~i~tK~~~~~~~~~~~~~~~~~~ 83 (198)
..+.++..++++.+.+.|+..|.- .| .|.++- +.++.. .. .++.|+|-.. .
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~---tG---GEPllr~dl~~li~~i~~~~~l~~i~itTNG~---------------l 102 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRL---TG---GEPLVRRGCDQLVARLGKLPGLEELSLTTNGS---------------R 102 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---EC---cCCCccccHHHHHHHHHhCCCCceEEEEeChh---------------H
Confidence 367888999999999999988763 34 344332 222221 11 1344443321 1
Q ss_pred HHHHHHHHHHhcCCCccceEEeccCCCC--------CChHHHHHHHHHHHHcCc----CcEEEecCCCHHHHHHHc
Q 048467 84 VRAACEARLKRLDVDCIDLYYQHRIDTK--------VPIEVTIGELKKLVEEGK----IKYIGLSEASASTIRRAR 147 (198)
Q Consensus 84 i~~~~~~sL~~L~~~~lDl~~lh~p~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~~~~~~ 147 (198)
+.+ .-..|...|++.+. +-++..++. ..++.+++.++.+++.|. |..+-+...+.+++.+++
T Consensus 103 l~~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~ 176 (329)
T PRK13361 103 LAR-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLV 176 (329)
T ss_pred HHH-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHH
Confidence 222 34456666777665 344554322 246789999999999885 233444557778887776
No 30
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=71.66 E-value=52 Score=28.29 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEecc-CCCC--------CChHHH-HHHHHHHHHcCcCcEEEecCCCH
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHR-IDTK--------VPIEVT-IGELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~-p~~~--------~~~~~~-~~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
.+.+.+++.++..+ +++.+.+.++.+.- |+.. .+.++. ..+.+.|.+.|. ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 66777888886654 47888888776553 1110 111233 335566777786 5799999975
No 31
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=70.70 E-value=53 Score=26.31 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=77.1
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
.....+.++..++.+.|.+.|+.-+-..+.|= +...+.|+ ..++-|+|=++++.. ..+.+.-...+
T Consensus 11 L~p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G------~~~~~~K~~E~ 76 (211)
T TIGR00126 11 LKADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLG------ASTTDVKLYET 76 (211)
T ss_pred CCCCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCC------CCcHHHHHHHH
Confidence 44556789999999999999999888766553 33444443 346888888877651 23333334444
Q ss_pred HHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHc--CcCcEE--EecCCCHHHHHHHc
Q 048467 89 EARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEE--GKIKYI--GLSEASASTIRRAR 147 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~ir~i--GvSn~~~~~~~~~~ 147 (198)
+..++ +|.|-+|+++--..-.+...+...+.|.++++. |+.-.+ -.+-.+.+++.++.
T Consensus 77 ~~Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~ 138 (211)
T TIGR00126 77 KEAIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKAC 138 (211)
T ss_pred HHHHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHH
Confidence 44444 689999988776543344566777777777764 543222 11223445555544
No 32
>PRK05660 HemN family oxidoreductase; Provisional
Probab=70.29 E-value=34 Score=29.79 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEecc-CCC-------CCC-hHHH---H-HHHHHHHHcCcCcEEEecCCCHHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHR-IDT-------KVP-IEVT---I-GELKKLVEEGKIKYIGLSEASAST 142 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~-p~~-------~~~-~~~~---~-~~l~~l~~~G~ir~iGvSn~~~~~ 142 (198)
..+.+.+.+.++..++ ++.+++.++.+-- |+. ..+ .++. + .+.+.|.+.|. ..+.+|||....
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~~~ 245 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAKPG 245 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccCCC
Confidence 3678888888877655 8888888876642 210 011 1222 2 24445667776 557999997544
No 33
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=69.89 E-value=74 Score=27.82 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHcCCC-eEeCCCCCCCCChhHHHHHHhhh----c--cCCcEEEEEeeccccCCCCcccCCCHHHHHH
Q 048467 14 PKSDTIALIHHAIDSGIT-ILDTSDAYGPHTNEILPGKALKA----R--YRGRVELATKFGIRYEDGQYSYCGDPAYVRA 86 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~sE~~~G~~l~~----~--~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~ 86 (198)
+.+....+.+.+.+.|++ +++|...= +...+-++++. . .+.-..+.-.+--..-+.....-+.++.++.
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~t~----~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~ 150 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLITQ----PDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIRE 150 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeeccCC----CHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhC
Confidence 457788888999999998 77776432 22233344443 1 1122344444422221222223344444432
Q ss_pred ----HHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 87 ----ACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 87 ----~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
.+++.++.-+ ..+-++-+ .|+ .....+.++.|.++|.+-.+|=||.+.+++.+++
T Consensus 151 p~~~~~~~~~~~~~-~~i~~vTl-APE----~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~ 209 (380)
T TIGR00221 151 PDVELFKKFLCEAG-GVITKVTL-APE----EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAF 209 (380)
T ss_pred cCHHHHHHHHHhcC-CCEEEEEE-CCC----CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHH
Confidence 2222222211 22333322 232 2346788999999999999999999999999988
No 34
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=68.09 E-value=36 Score=26.68 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=28.4
Q ss_pred ccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHH
Q 048467 99 CIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRA 146 (198)
Q Consensus 99 ~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~ 146 (198)
.+|.+++|..++ .+..+.+.+......++.+|+++....++.++
T Consensus 73 ~~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~ 116 (203)
T cd00405 73 GLDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAA 116 (203)
T ss_pred CCCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHHhhh
Confidence 378899998642 23344444444456899999999876554333
No 35
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=67.32 E-value=72 Score=27.59 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCCeEeCCCCCCC---------CChhHHHHHHhhhccCCc---EEEEEeeccccCCCCcccCCCHHHHHHH
Q 048467 20 ALIHHAIDSGITILDTSDAYGP---------HTNEILPGKALKARYRGR---VELATKFGIRYEDGQYSYCGDPAYVRAA 87 (198)
Q Consensus 20 ~~l~~A~~~Gi~~~DtA~~Yg~---------g~sE~~~G~~l~~~~R~~---~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 87 (198)
+.++...++|+|.+...-.=++ +.+.+.+-++++...... +-+..=++. +..+.+.++++
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~Gl--------Pgqt~~~~~~t 180 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGT--------PGESDDDWRAS 180 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccC--------CCCCHHHHHHH
Confidence 4555555679998876654441 222222233333311112 222222222 23678888888
Q ss_pred HHHHHHhcCCCccceEEeccCCCCCC-----------------hHHHHHHH-HHHHHcCcCcEEEecCCCHHHHHHHcCC
Q 048467 88 CEARLKRLDVDCIDLYYQHRIDTKVP-----------------IEVTIGEL-KKLVEEGKIKYIGLSEASASTIRRARHP 149 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p~~~~~-----------------~~~~~~~l-~~l~~~G~ir~iGvSn~~~~~~~~~~~p 149 (198)
++..+ +++.+++.++.+.- .+.++ ..+.+..+ +.|.+.|. ..+++|||....-+..+.
T Consensus 181 l~~~~-~l~~~~i~~y~l~~-~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa~~~~~~~hn- 256 (375)
T PRK05628 181 LDAAL-EAGVDHVSAYALIV-EDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWARPGGECRHN- 256 (375)
T ss_pred HHHHH-hcCCCEEEeeeeec-CCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-CeeeeccccCCCcccccc-
Confidence 88665 58889998887653 22211 11233333 44556666 568999997532221111
Q ss_pred cccccccCceeeeeccCCCCcccccCceeeeecccchhhHHHHHH
Q 048467 150 SNNSCAVGMVLVVTRCGGRDCSYLQGTWHWNCCVQSSRMWLSFIR 194 (198)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~ 194 (198)
.......+++-+ |+-.++.+.|... ....+-..|.+.+.
T Consensus 257 ~~yw~~~~~lg~----G~gA~s~~~~~~~--~n~~~l~~Y~~~v~ 295 (375)
T PRK05628 257 LGYWRGGDWWGA----GPGAHSHVGGVRW--WNVKHPAAYAARLA 295 (375)
T ss_pred hhhcCCCCEEEE----ccCcccccCCEEE--EcCCCHHHHHHHHH
Confidence 111111222233 6666666665432 22334455776654
No 36
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=67.06 E-value=77 Score=26.75 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHH----HHHhhhcc----CCcEEEEEeeccccCCCCcccCCCHHH
Q 048467 12 PKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILP----GKALKARY----RGRVELATKFGIRYEDGQYSYCGDPAY 83 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~----G~~l~~~~----R~~~~i~tK~~~~~~~~~~~~~~~~~~ 83 (198)
..+.++..++++.+.+.|++.+.-. | .|.++ -+.++... -.++.|+|-...
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~t---G---GEPll~~~l~~li~~i~~~~~~~~i~itTNG~l--------------- 106 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLT---G---GEPLLRKDLEDIIAALAALPGIRDLALTTNGYL--------------- 106 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEE---C---CCCcCccCHHHHHHHHHhcCCCceEEEEcCchh---------------
Confidence 3678899999999999999877643 3 23322 23333311 134555554321
Q ss_pred HHHHHHHHHHhcCCCccceEEeccCCC--------CCChHHHHHHHHHHHHcCc----CcEEEecCCCHHHHHHHc
Q 048467 84 VRAACEARLKRLDVDCIDLYYQHRIDT--------KVPIEVTIGELKKLVEEGK----IKYIGLSEASASTIRRAR 147 (198)
Q Consensus 84 i~~~~~~sL~~L~~~~lDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~~~~~~ 147 (198)
+.+. -..|...|++.+- +-+|..++ ...+++++++++.+++.|. +..+.+-..+.+++.++.
T Consensus 107 l~~~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~ 180 (331)
T PRK00164 107 LARR-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLL 180 (331)
T ss_pred HHHH-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHH
Confidence 2222 2334445555443 33444332 2346789999999999885 334444456666776666
No 37
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=65.69 E-value=47 Score=28.73 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEec-cCCCC-----------CC-hH----HHHHHHHHHHHcCcCcEEEecCCCH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQH-RIDTK-----------VP-IE----VTIGELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh-~p~~~-----------~~-~~----~~~~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
..+.+.+++.++.. .+|+.+.+.++.+. .|+.. .+ .+ ..-.+++.|.+.|. ..+++|||..
T Consensus 163 gqt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa~ 240 (377)
T PRK08599 163 GQTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFAK 240 (377)
T ss_pred CCCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeeeC
Confidence 36788888888765 55888888777543 12100 01 11 12346677778886 4689999964
Q ss_pred H
Q 048467 141 S 141 (198)
Q Consensus 141 ~ 141 (198)
.
T Consensus 241 ~ 241 (377)
T PRK08599 241 P 241 (377)
T ss_pred C
Confidence 3
No 38
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=65.47 E-value=31 Score=30.85 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCeEeCCCCC---------CCCChhHHHHHHhhhccCCc---EEEEEeeccccCCCCcccCCCHHHHHH
Q 048467 19 IALIHHAIDSGITILDTSDAY---------GPHTNEILPGKALKARYRGR---VELATKFGIRYEDGQYSYCGDPAYVRA 86 (198)
Q Consensus 19 ~~~l~~A~~~Gi~~~DtA~~Y---------g~g~sE~~~G~~l~~~~R~~---~~i~tK~~~~~~~~~~~~~~~~~~i~~ 86 (198)
.+.++...++|+|.+.-.-.= +.+.+.+.+-++++...... +-+.-=++.. ..+.+.+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP--------gqt~e~~~~ 223 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP--------HQTVESFRE 223 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC--------CCCHHHHHH
Confidence 456666667788877544322 22223333334444422112 2222233322 367888888
Q ss_pred HHHHHHHhcCCCccceEEe-ccCCCC----------C-ChHHH----HHHHHHHHHcCcCcEEEecCCCHH
Q 048467 87 ACEARLKRLDVDCIDLYYQ-HRIDTK----------V-PIEVT----IGELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 87 ~~~~sL~~L~~~~lDl~~l-h~p~~~----------~-~~~~~----~~~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
.++..+ +|+.+.+.++.+ |.|... . +.++. ..+.+.|.+.|. ..++++||...
T Consensus 224 tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far~ 292 (453)
T PRK13347 224 TLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFALP 292 (453)
T ss_pred HHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCC
Confidence 888776 588888888765 333210 1 12222 245667788887 55999999643
No 39
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=65.38 E-value=67 Score=25.62 Aligned_cols=123 Identities=12% Similarity=0.079 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeEeCC-CCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 10 FHPKPKSDTIALIHHAIDSGITILDTS-DAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 10 g~~~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
+...+.++..++++...++|+..|++. +..+. ...+.+.+..+..+... +.+..- ...+.++..+
T Consensus 8 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~--~~~~~~-----------~~~~~i~~~~ 73 (237)
T PF00682_consen 8 GVAFSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNAR--LQALCR-----------ANEEDIERAV 73 (237)
T ss_dssp STT--HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSE--EEEEEE-----------SCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccc--cceeee-----------ehHHHHHHHH
Confidence 334678889999999999999999999 44431 11223333333333322 222221 2355666666
Q ss_pred HHHHHhcCCCccceEEeccCC-----CCCC----hHHHHHHHHHHHHcCcCcEEEecC---CCHHHHHHHc
Q 048467 89 EARLKRLDVDCIDLYYQHRID-----TKVP----IEVTIGELKKLVEEGKIKYIGLSE---ASASTIRRAR 147 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~p~-----~~~~----~~~~~~~l~~l~~~G~ir~iGvSn---~~~~~~~~~~ 147 (198)
+.. ...|.+.+.++.--++- ...+ ++...+.++..++.|.-..+++.. ++++.+.++.
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 544 46677777755422220 0011 344556667777788877888744 4555555544
No 40
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=64.50 E-value=46 Score=29.53 Aligned_cols=62 Identities=11% Similarity=-0.034 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCCh--------H---HHH-HHHHHHHHcCcCcEEEecCCCHHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPI--------E---VTI-GELKKLVEEGKIKYIGLSEASAST 142 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~--------~---~~~-~~l~~l~~~G~ir~iGvSn~~~~~ 142 (198)
..+.+.+.+.++..+ +|+.+.+.++.+.-. +.+++ + +.+ .+.+.|.+.|. +.+++|||....
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~-~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far~~ 277 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVR-PLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRRND 277 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEcccccc-CCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceecCC
Confidence 477888888888877 578888888876532 11211 1 123 45566777785 569999997643
No 41
>PLN02321 2-isopropylmalate synthase
Probab=63.58 E-value=89 Score=29.46 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=20.3
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCCCCC
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSDAYG 40 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 40 (198)
.+.+.+.+.+.++++.+.++|...|--++.-|
T Consensus 233 Da~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG 264 (632)
T PLN02321 233 DAGRSDPEFLYRILGEVIKAGATTLNIPDTVG 264 (632)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 34456677777777777777777664443333
No 42
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=63.19 E-value=38 Score=25.40 Aligned_cols=63 Identities=6% Similarity=0.140 Sum_probs=47.5
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcC--CCccceEEeccCCCCCChHHHHHHHHHHHHc
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLD--VDCIDLYYQHRIDTKVPIEVTIGELKKLVEE 127 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~ 127 (198)
+|--+.|+-|++. . ..+..|++.+.++++.+. +...|++++..+....++++..+.|..+.++
T Consensus 46 ~RlG~sVSKKvg~-A--------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK-A--------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc-c--------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 4566788888763 2 667889999999888763 4679999999998777777777777766654
No 43
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=62.70 E-value=80 Score=25.41 Aligned_cols=159 Identities=8% Similarity=0.001 Sum_probs=81.0
Q ss_pred CCeEeC-CCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCCCccceEEeccC
Q 048467 30 ITILDT-SDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRI 108 (198)
Q Consensus 30 i~~~Dt-A~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p 108 (198)
.+.+.. +..|+. ++++.+.+|.++ .++++..+.|+.-.- .+...-....+.+.+.+-+.++-|+ +.+..+++..|
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~i-TH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~P 94 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLI-THERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFP 94 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCC-CCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHh-eecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcC
Confidence 444433 346664 678889999887 668999999997443 1111111235666466666999998 89999999999
Q ss_pred CCCCChHHHHHHHHHHHHc---CcCcEEEecC--CCHHHHHHHc-----------CCc-cccc----cc-CceeeeeccC
Q 048467 109 DTKVPIEVTIGELKKLVEE---GKIKYIGLSE--ASASTIRRAR-----------HPS-NNSC----AV-GMVLVVTRCG 166 (198)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~~---G~ir~iGvSn--~~~~~~~~~~-----------~p~-~~~~----~~-~~~~~~~~~~ 166 (198)
..-..-.+.++.|..+.+. |.-.+|=+=+ |-.+++.+++ .|- -..+ +. .-..+.+..|
T Consensus 95 psf~~~~~~~~~l~~~l~~~~~~~~~avE~R~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG 174 (230)
T PF01904_consen 95 PSFRFTPENLERLDAFLDRLPRGFRYAVEFRHPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHG 174 (230)
T ss_dssp TT--S-HHHHHHHHHHHHHTT-TS-EEEE--BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--
T ss_pred CCcCCCHHHHHHHHHHHhhcccccceEEecCCcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeecc
Confidence 6534445666666666554 4444555533 4445555555 111 0011 11 2455666666
Q ss_pred CCCcccccCceeeeecccchhhHHHHHHhh
Q 048467 167 GRDCSYLQGTWHWNCCVQSSRMWLSFIRTK 196 (198)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~ 196 (198)
....++ +.+.|..+.-+.|.+.|+.+
T Consensus 175 ~~~~~~----~~~~Ys~~eL~~~a~~i~~~ 200 (230)
T PF01904_consen 175 RNGEGW----YDYRYSDEELEEWAERIRAW 200 (230)
T ss_dssp S-TTTT----TB----HHHHHHHHHHHHHH
T ss_pred Cccccc----ccccCCHHHHHHHHHHHHHH
Confidence 654444 45556666677799999875
No 44
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=62.03 E-value=69 Score=27.72 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHcC---CCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSG---ITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACE 89 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 89 (198)
.++++-.+++....+.- +-.+|..+..+. --..+-+.+. ...-++|.+|.-... ...+.+.+.+-++
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DLl~------k~~~~~~~~~~l~ 117 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDLLP------KSVNLSKIKEWMK 117 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhhCC------CCCCHHHHHHHHH
Confidence 34556666666554322 236676554431 1112222222 345688999987543 1234566666666
Q ss_pred HHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 90 ARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 90 ~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+.++.++....+++.+..-. ...+++.++.|.++.+.+.+--+|.+|.....+--.+
T Consensus 118 ~~~k~~g~~~~~i~~vSAk~-g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 118 KRAKELGLKPVDIILVSAKK-GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKL 174 (360)
T ss_pred HHHHHcCCCcCcEEEecCCC-CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 66777776545666665443 3567888999988877778999999999876655544
No 45
>PRK05588 histidinol-phosphatase; Provisional
Probab=61.32 E-value=68 Score=26.07 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCCCC--h---hHHHHHHhhh---ccCCcEEEEEeeccccCCCCcccCCCHHHHH
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGPHT--N---EILPGKALKA---RYRGRVELATKFGIRYEDGQYSYCGDPAYVR 85 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~--s---E~~~G~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 85 (198)
......+.++.|.+.|+..+ .++|..... . ..-+-+.++. ....+|.+..-+... +. ..
T Consensus 14 ~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~-----------~~-~~ 80 (255)
T PRK05588 14 SKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGME-----------KD-LI 80 (255)
T ss_pred cccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEeccc-----------CC-CH
Confidence 34568899999999999998 777642100 0 0011222222 222455555555432 11 24
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCCC----------ChH----HHHHHHHHHHH-cCcCcEEE
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTKV----------PIE----VTIGELKKLVE-EGKIKYIG 134 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~~----------~~~----~~~~~l~~l~~-~G~ir~iG 134 (198)
..++..|+....|++ +.-+|+.+... +.+ ..++.+.++++ .+++.-||
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 555667777777776 68888753211 222 24577777776 46555444
No 46
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=61.08 E-value=70 Score=27.60 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCC-------------hH----HHH-HHHHHHHHcCcCcEEEecCCCH
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVP-------------IE----VTI-GELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~-------------~~----~~~-~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
.+.+.+++.++..+ +++.+.+.+|.+.- .+.++ .+ +.+ .+.+.|.+.|. ..+++|||..
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~~-~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~ye~~~fa~ 239 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLII-EEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGY-HQYEISNFAK 239 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccEe-cCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC-cEEeeeeeEC
Confidence 56777877777765 46777777766442 11111 11 122 34456777786 5589999975
Q ss_pred H
Q 048467 141 S 141 (198)
Q Consensus 141 ~ 141 (198)
.
T Consensus 240 ~ 240 (374)
T PRK05799 240 P 240 (374)
T ss_pred C
Confidence 3
No 47
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=60.09 E-value=1.1e+02 Score=25.97 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHH----HHh---hhcc-CCcEEEEEeeccccCCCCcccCCCHH
Q 048467 11 HPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPG----KAL---KARY-RGRVELATKFGIRYEDGQYSYCGDPA 82 (198)
Q Consensus 11 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G----~~l---~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~ 82 (198)
...+.++..++++.+.+.|++.|.- .| .|.++- +.+ ++.+ -+++.|+|-...
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~l---tG---GEPll~~~l~~li~~i~~~~gi~~v~itTNG~l-------------- 100 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRL---TG---GEPLLRKDLVELVARLAALPGIEDIALTTNGLL-------------- 100 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE---EC---ccccccCCHHHHHHHHHhcCCCCeEEEEeCchh--------------
Confidence 3467899999999999999987763 33 233322 222 2211 125566663321
Q ss_pred HHHHHHHHHHHhcCCCccceEEeccCCC---------CCChHHHHHHHHHHHHcCcC----cEEEecCCCHHHHHHHc
Q 048467 83 YVRAACEARLKRLDVDCIDLYYQHRIDT---------KVPIEVTIGELKKLVEEGKI----KYIGLSEASASTIRRAR 147 (198)
Q Consensus 83 ~i~~~~~~sL~~L~~~~lDl~~lh~p~~---------~~~~~~~~~~l~~l~~~G~i----r~iGvSn~~~~~~~~~~ 147 (198)
+.+ .-..|.+.|++.+- +-++..++ ...+++++++++.+++.|.- ..+-+.+.+.+++.+++
T Consensus 101 -l~~-~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~ 175 (334)
T TIGR02666 101 -LAR-HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLA 175 (334)
T ss_pred -HHH-HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHH
Confidence 111 23445666665544 33444332 12568899999999998853 22334556777777766
No 48
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=59.47 E-value=52 Score=29.38 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCeEeCCCC---------CCCCChhHHHHHHhhhccCCc---EEEEEeeccccCCCCcccCCCHHHHHH
Q 048467 19 IALIHHAIDSGITILDTSDA---------YGPHTNEILPGKALKARYRGR---VELATKFGIRYEDGQYSYCGDPAYVRA 86 (198)
Q Consensus 19 ~~~l~~A~~~Gi~~~DtA~~---------Yg~g~sE~~~G~~l~~~~R~~---~~i~tK~~~~~~~~~~~~~~~~~~i~~ 86 (198)
.+.++...++|++.+-..-. .+.+.+...+-++++...... +-+.--++.. ..+.+.+.+
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP--------gqt~e~~~~ 222 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLP--------KQTKESFAK 222 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCC--------CCCHHHHHH
Confidence 35556666679887754322 222222223334444422222 2233333322 367888999
Q ss_pred HHHHHHHhcCCCccceEEe-ccCC----------CCCC-hHH---HH-HHHHHHHHcCcCcEEEecCCCHH
Q 048467 87 ACEARLKRLDVDCIDLYYQ-HRID----------TKVP-IEV---TI-GELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 87 ~~~~sL~~L~~~~lDl~~l-h~p~----------~~~~-~~~---~~-~~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
.++..++ |+.+++.++.+ +.|. ...+ .++ .+ .+.+.|.+.|. ..++++||...
T Consensus 223 tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~~ 291 (455)
T TIGR00538 223 TLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAKP 291 (455)
T ss_pred HHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCC
Confidence 8887665 89999998876 2221 0011 222 22 34455556675 67999999754
No 49
>PRK06740 histidinol-phosphatase; Validated
Probab=57.06 E-value=1.3e+02 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCC
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAY 39 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Y 39 (198)
......+.+++|++.|+..|--++|-
T Consensus 59 ~~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 59 TTKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred ccchHHHHHHHHHHCCCcEEEECCCC
Confidence 34568899999999999988887774
No 50
>PRK08609 hypothetical protein; Provisional
Probab=55.30 E-value=1.6e+02 Score=27.39 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCC-----CChhHHHHHHh------hh-ccCCcEEEEEeeccccCCCCcccCCCHHHH
Q 048467 17 DTIALIHHAIDSGITILDTSDAYGP-----HTNEILPGKAL------KA-RYRGRVELATKFGIRYEDGQYSYCGDPAYV 84 (198)
Q Consensus 17 ~~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~sE~~~G~~l------~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i 84 (198)
...++++.|.+.|++.|=.++|... |.+...+-..+ ++ ...=+|+...-+.... +..
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~-------~g~---- 418 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP-------DGS---- 418 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC-------Ccc----
Confidence 4667999999999999999988631 22333333322 22 1122444444444322 111
Q ss_pred HHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEec
Q 048467 85 RAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLS 136 (198)
Q Consensus 85 ~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 136 (198)
..-.+..|+. .||+ +.-+|++.. .+.+++.+.+.++.+.|.+.-||=-
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHp 466 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHP 466 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECC
Confidence 1112223443 4555 666776532 3456677788888877777766533
No 51
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=55.05 E-value=60 Score=28.98 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEec-cCC----------CCCC-hHH---HH-HHHHHHHHcCcCcEEEecCCCHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQH-RID----------TKVP-IEV---TI-GELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh-~p~----------~~~~-~~~---~~-~~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
..+.+.+++.++..++ ++.+++.++.+- .|. ...+ .++ .+ .+.+.|.+.|.. .+++|||...
T Consensus 214 gqt~e~~~~~l~~~~~-l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~s~far~ 291 (453)
T PRK09249 214 KQTPESFARTLEKVLE-LRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ-YIGMDHFALP 291 (453)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE-EEeccceeCC
Confidence 3678888888887764 888888888653 111 0111 122 22 345566777765 4899999643
No 52
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=53.76 E-value=78 Score=27.73 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCC-C-----------CCC-hHH---HH-HHHHHHHHcCcCcEEEecCCCH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRID-T-----------KVP-IEV---TI-GELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~-~-----------~~~-~~~---~~-~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
..+.+.++++++..++ |+.++|.+|.+.--. . ..+ .++ .+ .+.+.|.+.|..+ +++|||..
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 4778899999999886 789999998776321 1 011 111 22 3555667778754 79999965
Q ss_pred H
Q 048467 141 S 141 (198)
Q Consensus 141 ~ 141 (198)
.
T Consensus 251 ~ 251 (390)
T PRK06582 251 I 251 (390)
T ss_pred C
Confidence 4
No 53
>PRK09061 D-glutamate deacylase; Validated
Probab=53.68 E-value=1.8e+02 Score=26.52 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCC
Q 048467 18 TIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDV 97 (198)
Q Consensus 18 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 97 (198)
..++++.|++.|...|=+...|-++.+...+-+.++...+.+..|........ ..+......++++.++....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~-------~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS-------NVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc-------cCCchhHHHHHHHHHHHHHH
Confidence 67788889999999997765665555566566666654556777777764321 01122223344444432221
Q ss_pred CccceEEeccCCC-CCChHHHHHHHHHHHHcCcCcEEEecCCC
Q 048467 98 DCIDLYYQHRIDT-KVPIEVTIGELKKLVEEGKIKYIGLSEAS 139 (198)
Q Consensus 98 ~~lDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 139 (198)
.-.-+.+.|-... ..+..+.++.+++++++|.--..-++-|.
T Consensus 244 ~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 244 TGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred hCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 1133666676431 22457788999999999855545555444
No 54
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=52.06 E-value=1.4e+02 Score=24.80 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCC----------CCCCCCChhHHHHHHhhhccCC-cEEEEEeeccccCCCCcccCCCHH
Q 048467 14 PKSDTIALIHHAIDSGITILDTS----------DAYGPHTNEILPGKALKARYRG-RVELATKFGIRYEDGQYSYCGDPA 82 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g~sE~~~G~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~ 82 (198)
+.++..++.+.+.+.|+..||.- ..|+ .+.+.+-+.++...+. ++-|..|+.+.. +
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~-----------~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV-----------T 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc-----------h
Confidence 46778888888889999988862 1232 4556666666663322 688999986432 1
Q ss_pred HHHHHHHHHHHhcCCCccceEE------eccCCC-----------CCC--hHHHHHHHHHHHHcCcCcEEEecCC-CHHH
Q 048467 83 YVRAACEARLKRLDVDCIDLYY------QHRIDT-----------KVP--IEVTIGELKKLVEEGKIKYIGLSEA-SAST 142 (198)
Q Consensus 83 ~i~~~~~~sL~~L~~~~lDl~~------lh~p~~-----------~~~--~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~ 142 (198)
.+ ..+-..+...|.|.++++= +|.... ..+ ....++.+.++++.=.+.-||+... +++.
T Consensus 167 ~~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 167 DI-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hH-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 22 2333456677877776531 111000 000 1124677777777656888898887 7888
Q ss_pred HHHHc
Q 048467 143 IRRAR 147 (198)
Q Consensus 143 ~~~~~ 147 (198)
+.+++
T Consensus 246 a~~~l 250 (296)
T cd04740 246 ALEFL 250 (296)
T ss_pred HHHHH
Confidence 88887
No 55
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=51.03 E-value=1.3e+02 Score=24.14 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCC-CCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYG-PHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEAR 91 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 91 (198)
.++++...+.+.+.++|..|+=|+.-|+ .|.+..-+ +.+++.-+.+ +-.|..-.. .+.+...+-++.-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv-~~m~~~v~~~--v~IKaaGGi--------rt~~~a~~~i~aG 197 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDV-RLMRNTVGDT--IGVKASGGV--------RTAEDAIAMIEAG 197 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHH-HHHHHHhccC--CeEEEeCCC--------CCHHHHHHHHHHh
Confidence 4567788999999999999999998776 33332221 2233311222 455554322 3678888888888
Q ss_pred HHhcCCCc
Q 048467 92 LKRLDVDC 99 (198)
Q Consensus 92 L~~L~~~~ 99 (198)
-.++|++.
T Consensus 198 a~riGts~ 205 (211)
T TIGR00126 198 ASRIGASA 205 (211)
T ss_pred hHHhCcch
Confidence 88998864
No 56
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.94 E-value=1.8e+02 Score=27.76 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCCC--CCCCCChhHHHHHHhhhccCCcEEEEE--eeccccCCC----CcccC----C
Q 048467 12 PKPKSDTIALIHHAIDSGITILDTSD--AYGPHTNEILPGKALKARYRGRVELAT--KFGIRYEDG----QYSYC----G 79 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~g~sE~~~G~~l~~~~R~~~~i~t--K~~~~~~~~----~~~~~----~ 79 (198)
+.+.++..+.++...+.|+.-|=.+. .|-+-.+|..+++.+++.- .++.|++ ++++..... +...+ .
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 57889999999999999999665543 4556689999999999944 6777777 887743111 00000 1
Q ss_pred CHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChH
Q 048467 80 DPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIE 115 (198)
Q Consensus 80 ~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~ 115 (198)
-.....++++..|+.-|.+ ..++++.+.....+.+
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~~ 248 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSAE 248 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCccccHH
Confidence 1223455666666666654 6788888876655543
No 57
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=50.41 E-value=59 Score=25.00 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHH
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLK 93 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (198)
+++..+-+++.|-+.|+.+|=.|..|| .+-..+-+.+.. . -++++.|.-.-... -....+.+.+++-|+
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG--~tA~k~lemveg-~-lkvVvVthh~Gf~e-------~g~~e~~~E~~~~L~ 80 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTG--YTALKALEMVEG-D-LKVVVVTHHAGFEE-------KGTQEMDEEVRKELK 80 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEeccc--HHHHHHHHhccc-C-ceEEEEEeeccccc-------CCceecCHHHHHHHH
Confidence 455566778888899999999999999 444444344333 1 24555554432221 234456777888888
Q ss_pred hcCCCccceEEeccCC-----------CCCChHHHHHHHHHHHHcCcCcEE
Q 048467 94 RLDVDCIDLYYQHRID-----------TKVPIEVTIGELKKLVEEGKIKYI 133 (198)
Q Consensus 94 ~L~~~~lDl~~lh~p~-----------~~~~~~~~~~~l~~l~~~G~ir~i 133 (198)
..|.+-+ -+-|... .-.|.+-+.++|. +.-+|.=-++
T Consensus 81 erGa~v~--~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~KVcv 128 (186)
T COG1751 81 ERGAKVL--TQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGVKVCV 128 (186)
T ss_pred HcCceee--eehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCcEEEE
Confidence 8885422 2334321 1234455566666 7777654333
No 58
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=50.25 E-value=1.6e+02 Score=25.02 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=77.0
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeC---CC-----CCCCC----ChhHHHHHHhhhc---cCCcEEEEEeeccccCCC
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDT---SD-----AYGPH----TNEILPGKALKAR---YRGRVELATKFGIRYEDG 73 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~g----~sE~~~G~~l~~~---~R~~~~i~tK~~~~~~~~ 73 (198)
+|+ ++++..+....+.+.|+..||- .+ .||.| ..-+.+.+.++.. ...++-|+.|+....
T Consensus 70 ~g~--~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~--- 144 (312)
T PRK10550 70 LGQ--YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGW--- 144 (312)
T ss_pred ccC--CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCC---
Confidence 455 5667777778888899999983 22 24443 3334555555551 122578999986532
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHH---HHHHHHHHHHcCcCcEEEecCC-CHHHHHHHc
Q 048467 74 QYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEV---TIGELKKLVEEGKIKYIGLSEA-SASTIRRAR 147 (198)
Q Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~---~~~~l~~l~~~G~ir~iGvSn~-~~~~~~~~~ 147 (198)
.+.+. ...+-..|+..| +|.+.+|.-.....+.. -|+.+.++++.-.|--||.-.. +++++++++
T Consensus 145 -----~~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l 213 (312)
T PRK10550 145 -----DSGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCM 213 (312)
T ss_pred -----CCchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHH
Confidence 11122 234555566666 56677887543222211 3677888888777888888876 778888776
No 59
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=48.77 E-value=28 Score=24.81 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCC
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYG 40 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 40 (198)
.+...+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 3567788999999999999999999997
No 60
>PRK02399 hypothetical protein; Provisional
Probab=48.74 E-value=58 Score=28.91 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHH
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRA 146 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~ 146 (198)
.+++...+.|.-...|.+.+|.-.. ==++||+|+++|.+. ||-..+.-++...
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~------GGraME~Li~~G~~~--gVlDlTttEv~d~ 251 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGT------GGRAMEKLIDSGLIA--GVLDLTTTEVCDE 251 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCC------chHHHHHHHHcCCce--EEEEcchHHHHHH
Confidence 5566666666555579999998653 247899999999997 4444444443333
No 61
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=47.69 E-value=1.2e+02 Score=29.73 Aligned_cols=69 Identities=14% Similarity=0.032 Sum_probs=55.1
Q ss_pred cCCCHHHHHHHHHHHHHhcCCC--------------------------ccceEEeccCCCCCCh---HHHHHHHHHHHHc
Q 048467 77 YCGDPAYVRAACEARLKRLDVD--------------------------CIDLYYQHRIDTKVPI---EVTIGELKKLVEE 127 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L~~~--------------------------~lDl~~lh~p~~~~~~---~~~~~~l~~l~~~ 127 (198)
.+.....+.+.++..|+.+++. .-.++++..|....++ +..|..+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4456678889999999988752 4566888887655443 4689999999999
Q ss_pred CcCcEEEecCCCHHHHHHHc
Q 048467 128 GKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 128 G~ir~iGvSn~~~~~~~~~~ 147 (198)
|+ +|=+++|+-++.+.+.
T Consensus 748 g~--aiiLTSHsMeE~EaLC 765 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALC 765 (885)
T ss_pred CC--EEEEEcCCHHHHHHHh
Confidence 99 8899999999988877
No 62
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=47.49 E-value=1.1e+02 Score=22.15 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcC--CCccceEEeccCCCC-CChHHHHHHHHHHHHc
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLD--VDCIDLYYQHRIDTK-VPIEVTIGELKKLVEE 127 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~~~lDl~~lh~p~~~-~~~~~~~~~l~~l~~~ 127 (198)
+|=-+.|+-|+.... ..+..+++.+.++++... ++..|++++..+... .+..+..+.|..|...
T Consensus 44 ~R~G~~VsKK~~~~A--------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRA--------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcch--------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 455677777755332 567888888888887654 345799999998643 4566666677666544
No 63
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=46.75 E-value=1.5e+02 Score=24.59 Aligned_cols=79 Identities=13% Similarity=-0.020 Sum_probs=52.2
Q ss_pred ChH-HHHHHHHHHHHcCCCeEeCCCCCCC-CChhH---HHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 14 PKS-DTIALIHHAIDSGITILDTSDAYGP-HTNEI---LPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 14 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~sE~---~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
+++ +..++.+.|+++|..|+=|+.-|+. |.+.+ ++-+.+++. ...--+..|..-.- .+.+...+-+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~-~~~~~vgIKAsGGI--------rt~~~A~~~i 214 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM-GVAKTVGFKPAGGV--------RTAEDAAQYL 214 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc-ccCCCeeEEccCCC--------CCHHHHHHHH
Confidence 445 4888999999999999999998874 33333 333333321 00112555654322 5678888888
Q ss_pred HHHHHhcCCCccc
Q 048467 89 EARLKRLDVDCID 101 (198)
Q Consensus 89 ~~sL~~L~~~~lD 101 (198)
+.--+.||.++++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 8888999988776
No 64
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.05 E-value=71 Score=29.77 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=42.6
Q ss_pred CCChhHHHHHHhhh-ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhc-CCCccceEEeccCCCCCCh
Q 048467 41 PHTNEILPGKALKA-RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRL-DVDCIDLYYQHRIDTKVPI 114 (198)
Q Consensus 41 ~g~sE~~~G~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-~~~~lDl~~lh~p~~~~~~ 114 (198)
.|.+-+.++++|-. .+|+++.|..-.. .++ +-+-.||++| |+.|+.-+.+-|..+..|.
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTY------------ERe---~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ 691 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTY------------ERE---AVLMGSLERLHGLPYLNKVVVVWNSPKDPP 691 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEe------------hHH---HHHHHHHHHhhCCcccceEEEEeCCCCCCh
Confidence 34677889999988 7888887765442 233 3366788888 6899999998887665443
No 65
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=45.88 E-value=1.8e+02 Score=24.32 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCC--------CCh----hHHHHHHhhh------c--cCCcEEEEEeecccc---
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGP--------HTN----EILPGKALKA------R--YRGRVELATKFGIRY--- 70 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--------g~s----E~~~G~~l~~------~--~R~~~~i~tK~~~~~--- 70 (198)
+++...++=+..+++|-+.+-|.. |+- |.+ +.+.-.+++- . ..++++|+.-++|..
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~TnT-y~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l 117 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTNT-YQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYL 117 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC--TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S---
T ss_pred CHHHHHHHHHHHHHCCCCeEEecC-CcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccc
Confidence 467778888889999999999875 441 222 2333333221 1 123588888888653
Q ss_pred --CCCCcccCCCHHHHHHHHHHHHHhcCCCccceEEeccC
Q 048467 71 --EDGQYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRI 108 (198)
Q Consensus 71 --~~~~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p 108 (198)
..-......+.+.+++.....++.|--..+|++++.-.
T Consensus 118 ~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~ 157 (305)
T PF02574_consen 118 SGSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETM 157 (305)
T ss_dssp -----CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 11122345678889999888888886556999998864
No 66
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.51 E-value=1.7e+02 Score=24.14 Aligned_cols=128 Identities=10% Similarity=0.020 Sum_probs=65.6
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCCCC------C-CCChh-HHHHHHhhhccCCcEEEEEeeccccCCCCcccCCC
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSDAY------G-PHTNE-ILPGKALKARYRGRVELATKFGIRYEDGQYSYCGD 80 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y------g-~g~sE-~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~ 80 (198)
||...+.++..++.....+.|+..|+....- + .+..+ +.+.+..+..++.++.......... ....-
T Consensus 14 ~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~-----~~~~~ 88 (275)
T cd07937 14 LATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV-----GYRHY 88 (275)
T ss_pred hceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc-----CccCC
Confidence 5666788889999999999999999986411 0 12232 3333222223444443332211000 00111
Q ss_pred HH-HHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEe-----cCCCHHHHHHHc
Q 048467 81 PA-YVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGL-----SEASASTIRRAR 147 (198)
Q Consensus 81 ~~-~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGv-----Sn~~~~~~~~~~ 147 (198)
+. ..+..++.+. ..+++.+-++. +..+++...+.++..++.|+.-...+ +.++++.+.++.
T Consensus 89 p~~~~~~di~~~~-~~g~~~iri~~-----~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~ 155 (275)
T cd07937 89 PDDVVELFVEKAA-KNGIDIFRIFD-----ALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLA 155 (275)
T ss_pred CcHHHHHHHHHHH-HcCCCEEEEee-----cCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHH
Confidence 22 2333333333 33544443321 22346677778888888886544444 345566655554
No 67
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=45.03 E-value=1.6e+02 Score=24.37 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCC--------------------------ccceEEeccCCCCCCh---HHHHHHHHHHHHcCcCcEEEe
Q 048467 85 RAACEARLKRLDVD--------------------------CIDLYYQHRIDTKVPI---EVTIGELKKLVEEGKIKYIGL 135 (198)
Q Consensus 85 ~~~~~~sL~~L~~~--------------------------~lDl~~lh~p~~~~~~---~~~~~~l~~l~~~G~ir~iGv 135 (198)
++.++++|++.|+. .-||+++.-|....+. .+.++-|.+|+++|+ .|=+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~ 194 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLM 194 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEE
Confidence 68888899888764 6688999998776665 457899999999986 5788
Q ss_pred cCCCHHHHHHHc
Q 048467 136 SEASASTIRRAR 147 (198)
Q Consensus 136 Sn~~~~~~~~~~ 147 (198)
.+|+...+.+..
T Consensus 195 vtHDL~~v~~~~ 206 (254)
T COG1121 195 VTHDLGLVMAYF 206 (254)
T ss_pred EeCCcHHhHhhC
Confidence 999998888866
No 68
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=44.99 E-value=2.1e+02 Score=24.95 Aligned_cols=123 Identities=18% Similarity=0.125 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHcCCC-eEeCCCCCCCCChhHHHHHHhhh----cc-CCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 15 KSDTIALIHHAIDSGIT-ILDTSDAYGPHTNEILPGKALKA----RY-RGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 15 ~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~sE~~~G~~l~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
.+....+-++++..|++ +++|...-. .|. +-++++. .. .....+.-.+--..-+.....-+.++.+++-=
T Consensus 77 ~~~l~~~~~~~~~~GvTt~lpT~it~~---~~~-~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~~~Gah~~~~~~~p~ 152 (382)
T PRK11170 77 VETLEIMQKANEKSGCTSFLPTLITSS---DEL-MKQAVRVMREYLAKHPNQALGLHLEGPYLNLVKKGTHNPEFIRKPD 152 (382)
T ss_pred HHHHHHHHHHHHhcCEeEEeeeccCCC---HHH-HHHHHHHHHHHHhcCCCeEEEEEeecCCCCcccCCCCCHHHhcCcC
Confidence 44455555667899999 777765432 333 3344443 11 11223333332111111222223344432211
Q ss_pred HHHHHhcCC--CccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 89 EARLKRLDV--DCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 89 ~~sL~~L~~--~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
.+-++.+.- +.+- ++-=.|+ .+ . .+.++.|.++|.+-.+|=||.+.+++.++.
T Consensus 153 ~~~~~~~~~~~~~i~-~iTlAPE--~~--~-~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~ 207 (382)
T PRK11170 153 AEMVDFLCENADVIT-KVTLAPE--MV--D-AEVIRKLVEAGIVVSAGHSNATYEEAKAGF 207 (382)
T ss_pred HHHHHHHHhccCCEE-EEEECCC--CC--c-HHHHHHHHHCCcEEEeeCCcCCHHHHHHHH
Confidence 122222210 2232 2222343 22 2 388999999999999999999999999998
No 69
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=44.97 E-value=90 Score=25.04 Aligned_cols=105 Identities=18% Similarity=0.076 Sum_probs=53.5
Q ss_pred CCCCCChHHHHHHHHHHHH-cCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHH
Q 048467 9 FFHPKPKSDTIALIHHAID-SGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAA 87 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 87 (198)
+|- ++.+++..+.+...+ .|+-|...++=|= +-+...+..+..+. .++++-.. +.+.+.
T Consensus 7 CGl-t~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~-------n~~~~~---- 66 (208)
T COG0135 7 CGL-TRLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV-------NESIEE---- 66 (208)
T ss_pred CCC-CCHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC-------CCCHHH----
Confidence 344 455666555555333 2444445466554 44444444444322 11333221 233333
Q ss_pred HHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCH
Q 048467 88 CEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
+.+.++.+ .+|++|+|...+ .+..+.|.+...-..++++.++.-..
T Consensus 67 i~~i~~~~---~ld~VQlHG~e~----~~~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 67 ILEIAEEL---GLDAVQLHGDED----PEYIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred HHHHHHhc---CCCEEEECCCCC----HHHHHHHHhhcCCceEEEEEeCCccc
Confidence 33344444 489999998732 23344444433456899999987544
No 70
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=44.46 E-value=1.8e+02 Score=24.05 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHH----HHHhhh---ccCCcEEEEEeeccccCCCCcccCCCHHH
Q 048467 11 HPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILP----GKALKA---RYRGRVELATKFGIRYEDGQYSYCGDPAY 83 (198)
Q Consensus 11 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~----G~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~ 83 (198)
..++.++..++++.+.+.|++.|.- .| .|.++ -+.++. ..-.++-|+|-.. .
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~---tG---GEPll~~~l~~iv~~l~~~g~~~v~i~TNG~---------------l 96 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKI---TG---GEPLLRKDLIEIIRRIKDYGIKDVSMTTNGI---------------L 96 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEE---EC---cccccccCHHHHHHHHHhCCCceEEEEcCch---------------H
Confidence 3468888999999999999987763 34 23321 222222 1112444544321 1
Q ss_pred HHHHHHHHHHhcCCCccceEEeccCCC--------CCChHHHHHHHHHHHHcCc----CcEEEecCCCHHHHHHHc
Q 048467 84 VRAACEARLKRLDVDCIDLYYQHRIDT--------KVPIEVTIGELKKLVEEGK----IKYIGLSEASASTIRRAR 147 (198)
Q Consensus 84 i~~~~~~sL~~L~~~~lDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~~~~~~ 147 (198)
+ ...-..|...|++.+. +-++.+++ ...++.+++.++.+++.|. +..+.+.+.+.+++.+++
T Consensus 97 l-~~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~ 170 (302)
T TIGR02668 97 L-EKLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMV 170 (302)
T ss_pred H-HHHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHH
Confidence 1 1233345566665544 33444432 1246788999999999884 234444546777777766
No 71
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.44 E-value=2.1e+02 Score=24.64 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=24.8
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCC
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTS 36 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 36 (198)
.+...+.++..++++...++|+..|+..
T Consensus 18 ~~~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 18 VRHQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEee
Confidence 5666788999999999999999999994
No 72
>PLN02389 biotin synthase
Probab=44.17 E-value=2.2e+02 Score=24.93 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChh----HHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNE----ILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE----~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
.+.++..+.++.+.+.|++.|--......+.+| ..+-+.++.+....+.|....+. .+.+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~----------l~~E~----- 180 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM----------LEKEQ----- 180 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC----------CCHHH-----
Confidence 688999999999999999988542111111122 24555555543334444432221 22322
Q ss_pred HHHHHhcCCCccceEEecc-C------CCCCChHHHHHHHHHHHHcCc
Q 048467 89 EARLKRLDVDCIDLYYQHR-I------DTKVPIEVTIGELKKLVEEGK 129 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~-p------~~~~~~~~~~~~l~~l~~~G~ 129 (198)
-..|+..|++.+-+-+ .. + -....+++.+++++.+++.|.
T Consensus 181 l~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 181 AAQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 2334455766543311 11 1 012356788999999999985
No 73
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=43.94 E-value=2e+02 Score=24.40 Aligned_cols=120 Identities=17% Similarity=0.080 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHc-CCCeEeCCCCCCC--CChhHHHHHHhhh---cc-CCcEEEEEeeccccCCCCcccCCCHHHHH
Q 048467 13 KPKSDTIALIHHAIDS-GITILDTSDAYGP--HTNEILPGKALKA---RY-RGRVELATKFGIRYEDGQYSYCGDPAYVR 85 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~--g~sE~~~G~~l~~---~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 85 (198)
.+.++..+++++..+. |++.+--+. |+ -.+...+-+.++. .+ ...+-+.|+.... .+..+.
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~----------~p~rit 186 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA----------DPARVT 186 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc----------ChhhcC
Confidence 3567788888877654 887552111 10 0112233333333 22 2335667765422 133344
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEE------EecCCCHHHHHHHc
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYI------GLSEASASTIRRAR 147 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i------GvSn~~~~~~~~~~ 147 (198)
..+-+.|++.|.. ..+-+|...+..-.+++.++++.|++.|..-.+ |+ |.+.+.++++.
T Consensus 187 ~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~ 251 (321)
T TIGR03822 187 PALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALM 251 (321)
T ss_pred HHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHH
Confidence 4555566666742 347777754433347899999999999953211 32 56777777766
No 74
>COG0218 Predicted GTPase [General function prediction only]
Probab=43.80 E-value=1.7e+02 Score=23.41 Aligned_cols=100 Identities=11% Similarity=-0.066 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHH------cCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHH
Q 048467 16 SDTIALIHHAID------SGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACE 89 (198)
Q Consensus 16 ~~~~~~l~~A~~------~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 89 (198)
++..+++...++ ..+-.+|.-..-- ..+..+=+++......=+++.||.-- .......+.+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK----------i~~~~~~k~l~ 158 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK----------LKKSERNKQLN 158 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc----------CChhHHHHHHH
Confidence 445555555554 3455788654333 55677888888877788999999953 55777888889
Q ss_pred HHHHhcCCCccce--EEeccCCCCCChHHHHHHHHHHHHc
Q 048467 90 ARLKRLDVDCIDL--YYQHRIDTKVPIEVTIGELKKLVEE 127 (198)
Q Consensus 90 ~sL~~L~~~~lDl--~~lh~p~~~~~~~~~~~~l~~l~~~ 127 (198)
...+.|+.+..|- +++........+++.++.+.+....
T Consensus 159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 9998998776665 5555555556688888888877654
No 75
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=43.73 E-value=2.2e+02 Score=24.85 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCC--CChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHH
Q 048467 16 SDTIALIHHAIDSGITILDTSDAYGP--HTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLK 93 (198)
Q Consensus 16 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (198)
++..++++.|+++|+.-|=+...|.+ ..++..+-+.++...+-+..|.+..-... ....+.+.+.++.+-
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~-------~~e~~av~~~~~~a~- 238 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG-------DSILEALDELLRLGR- 238 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc-------ccHHHHHHHHHHHHH-
Confidence 44567788889999987765555643 45777777777764444666776664221 122334444443332
Q ss_pred hcCCCccceEEeccCCCCC----ChHHHHHHHHHHHHcCcCcEEEecCCC---HHHHHHHc
Q 048467 94 RLDVDCIDLYYQHRIDTKV----PIEVTIGELKKLVEEGKIKYIGLSEAS---ASTIRRAR 147 (198)
Q Consensus 94 ~L~~~~lDl~~lh~p~~~~----~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~~~~~~ 147 (198)
..+. -+.+.|-..... ...++++.+++.+++|.--...++.+. ...+.+++
T Consensus 239 ~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~ 296 (415)
T cd01297 239 ETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIM 296 (415)
T ss_pred HhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHH
Confidence 3343 356666653322 345567777788888754445555543 44455555
No 76
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=43.39 E-value=1.6e+02 Score=25.31 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEe
Q 048467 11 HPKPKSDTIALIHHAIDSGITILD 34 (198)
Q Consensus 11 ~~~~~~~~~~~l~~A~~~Gi~~~D 34 (198)
..++.++..++++.+.+.|+..|.
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~ 67 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLH 67 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE
Confidence 346778888899998888888776
No 77
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.74 E-value=1.9e+02 Score=23.66 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=25.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEeCC
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGITILDTS 36 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 36 (198)
.++...+.++..++++...++|+..++..
T Consensus 14 ~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 14 AVRHQFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCCeecCHHHHHHHHHHHHHcCCCEEEee
Confidence 36777889999999999999999999987
No 78
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=42.72 E-value=1.9e+02 Score=23.74 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred HHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 89 EARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
...+...++..=|+++.-.....++ ++..+++.+++.| ++-|++++.....+.+..
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T~--~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~a 163 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRTP--YVLGALRYARARG-ALTIGIACNPGSPLLQLA 163 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCCH--HHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 3445556667789988888766554 6999999999998 889999998777776644
No 79
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=41.32 E-value=2.2e+02 Score=24.02 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 88 CEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
....|...+...=|+++.-.....++ ++..+++.+++.| ++.|++++.....+.+..
T Consensus 116 ~~~~l~a~~l~~~DvvI~IS~SG~T~--~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 116 GAQDLKAIGLTADDVVVGIAASGRTP--YVIGALEYAKQIG-ATTIALSCNPDSPIAKIA 172 (296)
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCCH--HHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 33445556655679998887766554 6899999999998 778999998766665543
No 80
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=41.16 E-value=1.7e+02 Score=22.86 Aligned_cols=121 Identities=18% Similarity=0.142 Sum_probs=73.7
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHH
Q 048467 12 PKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEAR 91 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 91 (198)
..+.++..++++.|.+.|+.-+-+.+.+- +...+.++ ...+.+.+=.++.. ...+.+....+++..
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p~~v-----~~~~~~l~---~~~~~v~~~~~fp~------g~~~~~~k~~eve~A 78 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNPCFV-----PLAREALK---GSGVKVCTVIGFPL------GATTTEVKVAEAREA 78 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcHHHH-----HHHHHHcC---CCCcEEEEEEecCC------CCCcHHHHHHHHHHH
Confidence 34678899999999998887776554321 22233333 23466666665443 124456677778887
Q ss_pred HHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHc--CcCcE--EEecCCCHHHHHHHc
Q 048467 92 LKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEE--GKIKY--IGLSEASASTIRRAR 147 (198)
Q Consensus 92 L~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~ir~--iGvSn~~~~~~~~~~ 147 (198)
++ +|.|-+|+++-=....+...++..+.+.++++. |+.-. +...-.+.+++..+.
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ 137 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKAC 137 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHH
Confidence 77 599999987655433334456677777777765 44332 233334556665555
No 81
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=40.54 E-value=1.3e+02 Score=21.31 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=45.5
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCC---CccceEEeccCCCC-CChHHHHHHHHHHHHc
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDV---DCIDLYYQHRIDTK-VPIEVTIGELKKLVEE 127 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---~~lDl~~lh~p~~~-~~~~~~~~~l~~l~~~ 127 (198)
+|=-+.|+-|++. . ..+..+++.+.+.++.+.. ...|++++-.+... .+..+..+.|..|.+.
T Consensus 38 ~R~GisVsKKvgk-A--------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN-A--------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc-h--------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4556778778764 3 6688899989888887632 46799999888643 4667777777777654
No 82
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.49 E-value=2.1e+02 Score=23.60 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=24.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCC
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSD 37 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~ 37 (198)
-|...+.++..++++...+.|+..|+...
T Consensus 15 ~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 15 ANAFFDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 34556889999999999999999999863
No 83
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=40.49 E-value=1.4e+02 Score=21.54 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=46.1
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCC---CccceEEeccCCCC-CChHHHHHHHHHHHHc
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDV---DCIDLYYQHRIDTK-VPIEVTIGELKKLVEE 127 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~---~~lDl~~lh~p~~~-~~~~~~~~~l~~l~~~ 127 (198)
+|=-+.|+-|++... ..+..+++.+.+.++.+.. ...|++++-.+... .+..+..+.|..|.++
T Consensus 47 ~R~G~~VsKK~~~~A--------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA--------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch--------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 455567777765333 6688899999999887642 46899999988654 4677888888777654
No 84
>PRK07534 methionine synthase I; Validated
Probab=40.28 E-value=2.4e+02 Score=24.24 Aligned_cols=95 Identities=19% Similarity=0.111 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCC------CChhH----HHHHHhh---h-c--cCCcEEEEEeeccccCCCCcc
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGP------HTNEI----LPGKALK---A-R--YRGRVELATKFGIRYEDGQYS 76 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------g~sE~----~~G~~l~---~-~--~R~~~~i~tK~~~~~~~~~~~ 76 (198)
..++...++=+..+++|-+.|=|...... ...|. +.-.+++ + . ...+++|+.=+++....-...
T Consensus 42 ~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~ 121 (336)
T PRK07534 42 DHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPM 121 (336)
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCC
Confidence 34576778888889999999987653221 01222 2222222 1 1 123678888888754111111
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccceEEecc
Q 048467 77 YCGDPAYVRAACEARLKRLDVDCIDLYYQHR 107 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~ 107 (198)
...+.+.+.+....-++.|--.-+|++++.-
T Consensus 122 ~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET 152 (336)
T PRK07534 122 GALTHALAVEAFHEQAEGLKAGGADVLWVET 152 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 2256777777887777777445589888875
No 85
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=40.17 E-value=2.3e+02 Score=24.05 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHcCCCeEeCCCCCCC---CChhHH----HHHHhh----------h-ccCCcEEEEEeeccccC--CCC
Q 048467 15 KSDTIALIHHAIDSGITILDTSDAYGP---HTNEIL----PGKALK----------A-RYRGRVELATKFGIRYE--DGQ 74 (198)
Q Consensus 15 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---g~sE~~----~G~~l~----------~-~~R~~~~i~tK~~~~~~--~~~ 74 (198)
++..+++...++++|-+.++|+. |.. +-+|++ +.+.++ . ...+...|+.-++|... .+.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADE 120 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChh
Confidence 56688888999999999999884 662 223331 111111 1 23444556666665430 111
Q ss_pred c--ccCCCHHHHHHHHHHHHHhcCCCccceEEeccC
Q 048467 75 Y--SYCGDPAYVRAACEARLKRLDVDCIDLYYQHRI 108 (198)
Q Consensus 75 ~--~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p 108 (198)
+ ....+.+.+.+=.+.-++.|+-.-+||+.+...
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETi 156 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETL 156 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeeccc
Confidence 2 234456656666677777777666999877764
No 86
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=39.81 E-value=59 Score=27.61 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=38.8
Q ss_pred CCCCCCCh--HHHHHHHHHHHHcCC---CeEeCCCCCCC-CChhHHHHHHhhh----ccCCc-EEEEEeec
Q 048467 8 SFFHPKPK--SDTIALIHHAIDSGI---TILDTSDAYGP-HTNEILPGKALKA----RYRGR-VELATKFG 67 (198)
Q Consensus 8 ~~g~~~~~--~~~~~~l~~A~~~Gi---~~~DtA~~Yg~-g~sE~~~G~~l~~----~~R~~-~~i~tK~~ 67 (198)
.||.+.+. .+|.++++.|-+.|. .||||+..|.. +.-|+.-+++|.. ..+-+ -+|++=++
T Consensus 127 NFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIG 197 (317)
T COG0825 127 NFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIG 197 (317)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEec
Confidence 46765543 578999999999985 59999999973 3344455555554 22322 34555555
No 87
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=39.37 E-value=1.5e+02 Score=24.65 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCcCcEE
Q 048467 116 VTIGELKKLVEEGKIKYI 133 (198)
Q Consensus 116 ~~~~~l~~l~~~G~ir~i 133 (198)
..|-+|++++++||.--+
T Consensus 150 ~~wpTL~em~~~GkrViv 167 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVL 167 (267)
T ss_pred CCCCCHHHHHhCCCEEEE
Confidence 358899999999986544
No 88
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=37.95 E-value=2.5e+02 Score=23.66 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCC-------CCh----hHHHHHHhhh-------ccCCcEEEEEeeccccC---C
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGP-------HTN----EILPGKALKA-------RYRGRVELATKFGIRYE---D 72 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-------g~s----E~~~G~~l~~-------~~R~~~~i~tK~~~~~~---~ 72 (198)
+++...++-+..+++|-+.|.|...... |.. +++.-.+++- ..+.+++|+.=++|... +
T Consensus 44 ~Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~ 123 (304)
T PRK09485 44 NPELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLAD 123 (304)
T ss_pred ChHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCC
Confidence 4566678888889999999998864331 222 3333333331 12225888888887541 1
Q ss_pred -CCcc--cCCCHHHHHHHHHHHHHhcCCCccceEEeccCCC----------------CCC---------------hHHHH
Q 048467 73 -GQYS--YCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDT----------------KVP---------------IEVTI 118 (198)
Q Consensus 73 -~~~~--~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~----------------~~~---------------~~~~~ 118 (198)
..+. ...+.+.+.+.....++.|--.-+|++++..... ..| -...-
T Consensus 124 ~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~ 203 (304)
T PRK09485 124 GSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLA 203 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHH
Confidence 1111 2357888988888888888556699988874311 001 01123
Q ss_pred HHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 119 GELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 119 ~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
++++.+.+.+.+-+||+....++.+.+++
T Consensus 204 ~~~~~l~~~~~~~~iGiNC~~p~~~~~~l 232 (304)
T PRK09485 204 EAAALLAASPQVVAVGVNCTAPELVTAAI 232 (304)
T ss_pred HHHHHHhcCCCceEEEecCCCHHHHHHHH
Confidence 34444444567889999888888888887
No 89
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=37.60 E-value=1e+02 Score=22.30 Aligned_cols=63 Identities=17% Similarity=0.057 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+.+.+.+.+.+++.|+..+++.-++-.+-.++...+-....+..+++. +.+-.|+.++|...-
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~-------~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELG-------IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCT-------SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhC-------CCeEEECHHHHhcCC
Confidence 478999999999999999998888888888876554333333333222 456667777777544
No 90
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=37.23 E-value=2.6e+02 Score=23.71 Aligned_cols=122 Identities=13% Similarity=0.014 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHH--------
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYV-------- 84 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i-------- 84 (198)
.+.++..+.++.+.+.|++.|-...-..+......+-+.++.+.+...-+..+. .++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~------------~s~~ei~~~~~~~g 139 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS------------FSPVEIVYIAKKEG 139 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC------------CCHHHHHHHhccCC
Confidence 578889999999999999877654221111112223333343221111111111 112211
Q ss_pred --HHHHHHHHHhcCCCccceE--E-e-----ccCCC-CCChHHHHHHHHHHHHcCcCcE----EEecCCCHHHHHHHc
Q 048467 85 --RAACEARLKRLDVDCIDLY--Y-Q-----HRIDT-KVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAR 147 (198)
Q Consensus 85 --~~~~~~sL~~L~~~~lDl~--~-l-----h~p~~-~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~~~~~~ 147 (198)
.+..-+.|++.|++.++.. . + +...+ ..+.++.+++++.+++.|.--. +|+ ..+.+++.+.+
T Consensus 140 ~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~~l 216 (340)
T TIGR03699 140 LSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIEHL 216 (340)
T ss_pred CCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHHHH
Confidence 1445556777788777631 1 1 11111 2356778999999999985333 343 45666655544
No 91
>PRK07094 biotin synthase; Provisional
Probab=36.73 E-value=2.5e+02 Score=23.47 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCC----CCCCCCChhHHHHHHhhhccC-CcEEEEEeeccccCCCCcccCCCHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTS----DAYGPHTNEILPGKALKARYR-GRVELATKFGIRYEDGQYSYCGDPAYVRAA 87 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~g~sE~~~G~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 87 (198)
.+.++..+.++.+.+.|++.|--. ..|. ...+-+.++.+.. .++.+. +... ..+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~----~~~l~~l~~~i~~~~~l~i~--~~~g--------~~~~e~l--- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT----DEKIADIIKEIKKELDVAIT--LSLG--------ERSYEEY--- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC----HHHHHHHHHHHHccCCceEE--EecC--------CCCHHHH---
Confidence 477888899999999999976422 2222 2344455555222 344332 2211 1222222
Q ss_pred HHHHHHhcCCCccceEEeccC--------CCCCChHHHHHHHHHHHHcCcCcE----EEecCCCHHHHHHHc
Q 048467 88 CEARLKRLDVDCIDLYYQHRI--------DTKVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAR 147 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p--------~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~~~~~~ 147 (198)
..|+..|++.+-+ =+... ......++.+++++.+++.|.--. +|+...+.+++.+.+
T Consensus 133 --~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l 201 (323)
T PRK07094 133 --KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDI 201 (323)
T ss_pred --HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHH
Confidence 3455566554432 11111 122456788899999999885222 455566777766655
No 92
>PRK05414 urocanate hydratase; Provisional
Probab=36.62 E-value=1.3e+02 Score=27.57 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc-CCcccccccCceeeeeccCC
Q 048467 89 EARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR-HPSNNSCAVGMVLVVTRCGG 167 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~ 167 (198)
...-+|+.+.|+|.+. .+++++++-.++.+++|+...||+-.--++-+++++ ..+..-..-.|- ..+.+
T Consensus 201 ~ri~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQT---SaHdp 270 (556)
T PRK05414 201 SRIDKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQT---SAHDP 270 (556)
T ss_pred HHHHHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCc---cccCc
Confidence 3445778889999652 468899999999999999999999998888888887 111111111211 11245
Q ss_pred CCcccccCceeee
Q 048467 168 RDCSYLQGTWHWN 180 (198)
Q Consensus 168 ~~~~~~~g~~~~~ 180 (198)
.+ |++.-.|+++
T Consensus 271 ~~-GY~P~G~t~e 282 (556)
T PRK05414 271 LN-GYLPVGWTLE 282 (556)
T ss_pred cc-ccCCCCCCHH
Confidence 55 7777777654
No 93
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=36.01 E-value=44 Score=29.37 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=42.3
Q ss_pred ChhHHHHHHhhhccCCcEEEEEeeccccCC------CCcccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCC
Q 048467 43 TNEILPGKALKARYRGRVELATKFGIRYED------GQYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTK 111 (198)
Q Consensus 43 ~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~------~~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~ 111 (198)
.++..+.+.+++....=+||-||+-..-.+ .........+.|++.+.+.|++-|+..-.+|++-..+..
T Consensus 128 ~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 128 ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 678888999988555567899998742211 111122334567888888999889988999999987654
No 94
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=35.99 E-value=1.9e+02 Score=21.77 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=44.9
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcC--CCccceEEeccCCC-CCChHHHHHHHHHHHHcC
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLD--VDCIDLYYQHRIDT-KVPIEVTIGELKKLVEEG 128 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~~~lDl~~lh~p~~-~~~~~~~~~~l~~l~~~G 128 (198)
.|=-+.|+-|++... ..+..+++.+.++++.+. +...|++++-.+.. ..+..++.+.|..|.++-
T Consensus 48 ~RlG~sVSKKvg~~A--------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k~ 115 (145)
T PRK04820 48 PRLGLAVSRKVDTRA--------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRRA 115 (145)
T ss_pred cEEEEEEeccccCcc--------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 455677777765332 557778888888887653 34459888888764 346778888888887663
No 95
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=35.29 E-value=1.2e+02 Score=22.30 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCC
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEA 138 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~ 138 (198)
.+.+.+...++...+.- -+.-.+=..|...++....+.|..+++.| +..|++.+-
T Consensus 81 v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t~ 135 (141)
T PRK11267 81 VTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVGE 135 (141)
T ss_pred ccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEec
Confidence 45566666666544422 12223334566788999999999999999 556888763
No 96
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=35.16 E-value=2.1e+02 Score=24.61 Aligned_cols=133 Identities=17% Similarity=0.098 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHcCCCeEeCCCCCCC--CChhH----HHHHHhhh------ccCCcE-----EEEEeecccc-------
Q 048467 15 KSDTIALIHHAIDSGITILDTSDAYGP--HTNEI----LPGKALKA------RYRGRV-----ELATKFGIRY------- 70 (198)
Q Consensus 15 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~----~~G~~l~~------~~R~~~-----~i~tK~~~~~------- 70 (198)
++...++-+.++++|.+++-|...+.. +..|. ..-+.... ..|+++ +|+.-+++..
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 577889999999999999999865541 11222 11111111 234443 3433443322
Q ss_pred -CCCCcccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCC----------------C--------------hHHHHH
Q 048467 71 -EDGQYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKV----------------P--------------IEVTIG 119 (198)
Q Consensus 71 -~~~~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~----------------~--------------~~~~~~ 119 (198)
..+.+....+.+.+.+-.+..|+.+.-.-+|++.+....... | --++.+
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e 211 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGE 211 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHH
Confidence 123445667888899999999999877779999888752210 1 013455
Q ss_pred HHHHHHHcCc-CcEEEecCCCHHHHHHHc
Q 048467 120 ELKKLVEEGK-IKYIGLSEASASTIRRAR 147 (198)
Q Consensus 120 ~l~~l~~~G~-ir~iGvSn~~~~~~~~~~ 147 (198)
....+.++|. +-.|||-.+.+..+..++
T Consensus 212 ~~~~~~~~~~~~~~IGvNC~~~~~~~~~~ 240 (317)
T KOG1579|consen 212 EAAQLLKDGINLLGIGVNCVSPNFVEPLL 240 (317)
T ss_pred HHHHHhccCCceEEEEeccCCchhccHHH
Confidence 5555666665 888999877766544444
No 97
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=34 Score=28.23 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCC
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGIT 31 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi~ 31 (198)
.|...++++++.+++..|+++|+-
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhhc
Confidence 477788999999999999999963
No 98
>PRK11024 colicin uptake protein TolR; Provisional
Probab=34.74 E-value=1.2e+02 Score=22.43 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecC
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSE 137 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 137 (198)
.+.+.+...++..+..- -+...+=..|...++..+.+.|+.+++.| +..+++..
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~t 138 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLMT 138 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 35566666666555432 13333445667789999999999999998 45577653
No 99
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=34.17 E-value=3e+02 Score=23.63 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHH-----------------hhh--ccCCcEEEEEeeccccCCC
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKA-----------------LKA--RYRGRVELATKFGIRYEDG 73 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~-----------------l~~--~~R~~~~i~tK~~~~~~~~ 73 (198)
.+.+...++.+++-+.|+.+|=|.-.-. +-.++-+. |+. .....++|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm------- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE---SADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM------- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH---HHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC-------
Confidence 4678888999999999999997664221 21222211 111 022334444433
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCC-CCChHH-HHHHHHHHHHcCcCcEEEecCCCHHH
Q 048467 74 QYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDT-KVPIEV-TIGELKKLVEEGKIKYIGLSEASAST 142 (198)
Q Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~-~~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~~~ 142 (198)
.+.+.|..+++...+. |.+.-++.++|.... ..+.++ -+++|..|++.=. .-||+|.|+...
T Consensus 143 -----atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~ 206 (329)
T TIGR03569 143 -----ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGI 206 (329)
T ss_pred -----CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccH
Confidence 3578888888887543 432225899998752 233332 4666776666433 359999997653
No 100
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=33.22 E-value=2.7e+02 Score=22.73 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCCCC-hhHHHHHHhhhccCCc-EEEEEeeccccCCCCcccCCCHHHHHHHHHHH
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGPHT-NEILPGKALKARYRGR-VELATKFGIRYEDGQYSYCGDPAYVRAACEAR 91 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~-sE~~~G~~l~~~~R~~-~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~s 91 (198)
+..++.+.+..+...+.+.++---.|-... +..-+-..++....+. ++++-+.-.. .| ....+.+.-.+-+...
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~E--GG--~~~~~~~~~i~ll~~l 87 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKE--GG--EFPGSEEEYIELLKKL 87 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhh--cC--CCCCCHHHHHHHHHHH
Confidence 567777888888888888776654444211 2223334444433443 5555442111 11 1224555556666666
Q ss_pred HHhcCCCccce----------------------EEeccCCCCCChHHHHHHHHHHHHcC-cCcEEEecCCCHHHHHHHc
Q 048467 92 LKRLDVDCIDL----------------------YYQHRIDTKVPIEVTIGELKKLVEEG-KIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 92 L~~L~~~~lDl----------------------~~lh~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~~~~~~ 147 (198)
.+.-+.+|+|+ +--|..+...+.++..+.+.++.+.| -|-.|-+.-.+...+..++
T Consensus 88 a~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~~DvL~ll 166 (231)
T COG0710 88 AELNGPDYIDIELSSPEDDVKEIIKFAKKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLL 166 (231)
T ss_pred HhhcCCCEEEEEccCcchhHHHHHhccccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHHHH
Confidence 66556888887 22344444445788899999999988 7777888887777766666
No 101
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.09 E-value=3e+02 Score=24.65 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCCeEeCCCCCC-CCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCCC
Q 048467 20 ALIHHAIDSGITILDTSDAYG-PHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDVD 98 (198)
Q Consensus 20 ~~l~~A~~~Gi~~~DtA~~Yg-~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~ 98 (198)
..++.+++.| .+-..-.|| +|....-+.+.|...-..++.-.+-+ ..+.+.+++.+++..+.++..
T Consensus 37 ~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-----------~~gvkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 37 KPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-----------TSGVKDLREIIEEARKNRLLG 103 (436)
T ss_pred chHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-----------cccHHHHHHHHHHHHHHHhcC
Confidence 5678888876 334455788 57888888888887222233222222 245788999999998777643
Q ss_pred ccceEEe---ccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCH
Q 048467 99 CIDLYYQ---HRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASA 140 (198)
Q Consensus 99 ~lDl~~l---h~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 140 (198)
.==++++ |..+ ...-++|--.++.|.|.-||-++-+|
T Consensus 104 r~tiLflDEIHRfn-----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 104 RRTILFLDEIHRFN-----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CceEEEEehhhhcC-----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 3334444 4432 24567888899999999999998764
No 102
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=32.70 E-value=2.9e+02 Score=22.94 Aligned_cols=105 Identities=17% Similarity=0.120 Sum_probs=67.1
Q ss_pred CCCCCChHHHHHHHHHHHH--cCCCeEeCCCCCCCCChhHHHHHHhhhccCC-cEEEEEeeccccCCCCcccCCCHHHHH
Q 048467 9 FFHPKPKSDTIALIHHAID--SGITILDTSDAYGPHTNEILPGKALKARYRG-RVELATKFGIRYEDGQYSYCGDPAYVR 85 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~--~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~i~ 85 (198)
.....+.++..++++.|.+ .|+.-+-..+.|= +...+.|+. ... ++-|+|=++++. ...+.+.-.
T Consensus 19 L~p~~T~~~I~~lc~eA~~~~~~faaVcV~P~~v-----~~a~~~L~~-~~~~~vkv~tVigFP~------G~~~t~~K~ 86 (257)
T PRK05283 19 LNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFI-----PIARKTLRE-QGTPEIRIATVTNFPH------GNDDIDIAL 86 (257)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeEEEECHHHH-----HHHHHHhcc-cCCCCCeEEEEecCCC------CCCcHHHHH
Confidence 4455688999999999999 5888887766553 344444542 112 588888887765 124445555
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHH
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVE 126 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~ 126 (198)
...+..++ .|.+=||+++==..-.+.+++.+.+.+.++++
T Consensus 87 ~Ea~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~ 126 (257)
T PRK05283 87 AETRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKE 126 (257)
T ss_pred HHHHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHH
Confidence 55566665 48899997654333333455666666666665
No 103
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.70 E-value=3.2e+02 Score=23.42 Aligned_cols=87 Identities=11% Similarity=-0.056 Sum_probs=51.3
Q ss_pred CCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCCCccceE-Eecc-CCCCCC---hH-HHHHHHHHHHHcCcC
Q 048467 57 RGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDVDCIDLY-YQHR-IDTKVP---IE-VTIGELKKLVEEGKI 130 (198)
Q Consensus 57 R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~-~lh~-p~~~~~---~~-~~~~~l~~l~~~G~i 130 (198)
..++.|..|+....... ...+.+... .+-..|+.+|+|++++- -.|. +.+..+ .. .......++++.=.+
T Consensus 202 G~d~~v~iRi~~~D~~~---~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i 277 (353)
T cd02930 202 GEDFIIIYRLSMLDLVE---GGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI 277 (353)
T ss_pred CCCceEEEEecccccCC---CCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCC
Confidence 45788888987543110 123444433 34455788888888872 2232 222111 11 134556788887777
Q ss_pred cEEEecCC-CHHHHHHHc
Q 048467 131 KYIGLSEA-SASTIRRAR 147 (198)
Q Consensus 131 r~iGvSn~-~~~~~~~~~ 147 (198)
--++.-.. +++.+++++
T Consensus 278 PVi~~G~i~~~~~a~~~i 295 (353)
T cd02930 278 PVIASNRINTPEVAERLL 295 (353)
T ss_pred CEEEcCCCCCHHHHHHHH
Confidence 77777665 788888888
No 104
>PLN02666 5-oxoprolinase
Probab=32.06 E-value=5.3e+02 Score=26.73 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCCC--CCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcc--------cCCCH
Q 048467 12 PKPKSDTIALIHHAIDSGITILDTSD--AYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYS--------YCGDP 81 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~--------~~~~~ 81 (198)
+.++++..++++...+.|+.-+=.+- .|-+-..|+.+.+.+++...-.+.++..+++....-... .....
T Consensus 172 plde~~v~~~~~~l~~~gv~avAV~~l~S~~NP~HE~~v~ei~~e~~~~~VslShei~~~~~e~eR~~TavlnAyl~p~~ 251 (1275)
T PLN02666 172 PLDEEALRPLLQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHTASVDAYLTPVI 251 (1275)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCcCChHHHHHHHHHHHhcCCCcEEEcchhhhhccccchHHHHHHHHHHHHHH
Confidence 67888899999999999999665544 444557899999999874334577778887643111000 00011
Q ss_pred HHHHHHHHHHHHhcCCCccceEEeccCCCCCChH
Q 048467 82 AYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIE 115 (198)
Q Consensus 82 ~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~ 115 (198)
......+++.|+..+.+ .+++++++.....+.+
T Consensus 252 ~~yl~~l~~~l~~~g~~-~~l~im~sdGG~~~~~ 284 (1275)
T PLN02666 252 KEYLSGFLSGFDDGLGD-VNVLFMQSDGGLTPES 284 (1275)
T ss_pred HHHHHHHHHHHHhcCCC-CCEEEEecCCCcCCHH
Confidence 22344555555554543 5889999876655544
No 105
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=31.76 E-value=1.7e+02 Score=26.11 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=39.9
Q ss_pred CCCCccC--CCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCC----ChhHHHHHHhhh-----ccCCcEEEEEee
Q 048467 1 LPNNIKL--SFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPH----TNEILPGKALKA-----RYRGRVELATKF 66 (198)
Q Consensus 1 ~p~~~~~--~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g----~sE~~~G~~l~~-----~~R~~~~i~tK~ 66 (198)
||.+.|. .|+.--+..++.+++..|+..| ....|++. .+.+.+.+.+.+ ...+|+|+++-.
T Consensus 64 ipl~~GDPsv~~~~~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 64 LPLGHGDPSVYPCFRTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred ccCCCCCCCccccccCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 4555553 5776556788999999999988 34467754 344555555443 456788887644
No 106
>TIGR00035 asp_race aspartate racemase.
Probab=31.69 E-value=2.5e+02 Score=22.40 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhcCCCccceEEeccCCCC------------CChHHHHHHHHHHHHcCcCcEEEecCCCHHH
Q 048467 80 DPAYVRAACEARLKRLDVDCIDLYYQHRIDTK------------VPIEVTIGELKKLVEEGKIKYIGLSEASAST 142 (198)
Q Consensus 80 ~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 142 (198)
+.+.+++-++..-.+.+.++++.+.++.|+-. .+.....+.++.|.+.| +..|-++..+...
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 44556666666667788899999999998431 12234566666776654 7999998876554
No 107
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.60 E-value=1.8e+02 Score=20.89 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcC
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKI 130 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i 130 (198)
+.+...++..+++.|+.||.+ |+...+.+..-+.+-...++|+|
T Consensus 68 g~sYptvR~kld~vlramgy~---------p~~e~~~~i~~~~i~~qle~Gei 111 (122)
T COG3877 68 GISYPTVRTKLDEVLRAMGYN---------PDSENSVNIGKKKIIDQLEKGEI 111 (122)
T ss_pred CCccHHHHHHHHHHHHHcCCC---------CCCCChhhhhHHHHHHHHHcCCC
Confidence 366778999999999999853 44444555555556666677776
No 108
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.44 E-value=2.4e+02 Score=22.52 Aligned_cols=69 Identities=17% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcC-cCcEEEecCCCHHHHHHHc
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEG-KIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~~~~~~ 147 (198)
..+.+...+-++ .|..+|++++++-..-.+....-.+..++.++++.+.+ .++...++.-..+.++.+.
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~ 84 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERAL 84 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHH
Confidence 345555555444 47788988888766554422111245677788888877 5666666665566666665
No 109
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.34 E-value=58 Score=17.69 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHcCCC
Q 048467 16 SDTIALIHHAIDSGIT 31 (198)
Q Consensus 16 ~~~~~~l~~A~~~Gi~ 31 (198)
.+-.+++..|.++|+.
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4578899999999975
No 110
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=31.00 E-value=1.5e+02 Score=23.48 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEec-CCCHHHHHHHc
Q 048467 91 RLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLS-EASASTIRRAR 147 (198)
Q Consensus 91 sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~~~~~~ 147 (198)
....+|.|++-+.+........+.+. .+.+.+.. .+.++.+||. |-+++.+.++.
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~-a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~ 71 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQ-IKKLASAV-PNHIDKVCVVVNPDLTTIEHIL 71 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHH-HHHHHHhC-CCCCCEEEEEeCCCHHHHHHHH
Confidence 34568999999875443223344443 33333332 3568889995 78888888877
No 111
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=30.93 E-value=3.1e+02 Score=22.97 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHc--CCCeEeCCCCCCCCChhHHHHHHhhhcc-CCcEEEEEeeccccCCCCcccCCCHHHHHHHHHH
Q 048467 14 PKSDTIALIHHAIDS--GITILDTSDAYGPHTNEILPGKALKARY-RGRVELATKFGIRYEDGQYSYCGDPAYVRAACEA 90 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~--Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (198)
..+.|..+.++|+.+ |+.+.- ..|..=.++..+-+.+.... ..-+++.|=+ ...+++.+++
T Consensus 14 tGeTAe~v~~A~l~QF~~~~~~~--~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv--------------~~elr~~l~~ 77 (269)
T PRK05339 14 TGETAETVGRAALSQFPNVEFEE--HRYPFVRTEEKADEVLEEINAERPIVFYTLV--------------DPELREILEE 77 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCCeeE--EEeCCcCCHHHHHHHHHHHHhcCCEEEEeCC--------------CHHHHHHHHH
Confidence 356677888877764 444321 12322247777777777733 4456666655 3568999999
Q ss_pred HHHhcCCCccceE
Q 048467 91 RLKRLDVDCIDLY 103 (198)
Q Consensus 91 sL~~L~~~~lDl~ 103 (198)
..+.+++.++|++
T Consensus 78 ~~~~~~i~~vdll 90 (269)
T PRK05339 78 RCAEFGIPCIDIL 90 (269)
T ss_pred HHHHcCCCEEecc
Confidence 9999999999985
No 112
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=30.57 E-value=85 Score=23.82 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=35.0
Q ss_pred CccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 98 DCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 98 ~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+.=|++++-+....+ .++.++++.+++.| ++-|++++.....+.+..
T Consensus 100 ~~~Dv~I~iS~SG~t--~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~a 146 (177)
T cd05006 100 QPGDVLIGISTSGNS--PNVLKALEAAKERG-MKTIALTGRDGGKLLELA 146 (177)
T ss_pred CCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhC
Confidence 445777766654433 58999999999998 899999998666666544
No 113
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=30.34 E-value=3.3e+02 Score=22.89 Aligned_cols=57 Identities=25% Similarity=0.333 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 88 CEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
....|+..+...=|+++.-.....++ ++..+++.+++.| ++-|++++.....+.+..
T Consensus 120 ~~~~l~~~~l~~~DvvI~IS~SG~T~--~vi~al~~Ak~~G-a~tI~IT~~~~s~La~~a 176 (299)
T PRK05441 120 GAADLKAINLTAKDVVVGIAASGRTP--YVIGALEYARERG-ALTIGISCNPGSPLSKEA 176 (299)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCCH--HHHHHHHHHHHCC-CeEEEEECCCCChhhHhC
Confidence 44456666677789988887766554 6999999999998 688999998766666543
No 114
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.66 E-value=4e+02 Score=23.62 Aligned_cols=120 Identities=11% Similarity=-0.055 Sum_probs=56.2
Q ss_pred CCCChHHHHHHHHHHHHcCCC-eEe-CCCC-CCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHH
Q 048467 11 HPKPKSDTIALIHHAIDSGIT-ILD-TSDA-YGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAA 87 (198)
Q Consensus 11 ~~~~~~~~~~~l~~A~~~Gi~-~~D-tA~~-Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 87 (198)
.+.-.....++++.+-+.|++ .++ |... +. +++.+-+.++. .=+.+.++.|......-.........+.+.+.
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~---~~e~~~~L~~~-gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~ 159 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFD---DPEIAEFLIDN-GVREVSFTVFATDPELRREWMKDPTPEASLQC 159 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccC---CHHHHHHHHHc-CCCEEEEecccCCHHHHHHHhCCCCHHHHHHH
Confidence 344456788888888888886 334 4432 32 44444443332 23457777777532100000001122455555
Q ss_pred HHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCC
Q 048467 88 CEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEAS 139 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 139 (198)
++...+. ..-.+-++++...+......++++. |.+-| +..+|+..|.
T Consensus 160 L~~L~e~-~~v~~~ivlIPGiND~eel~~ti~~---L~~lg-~~~V~L~~y~ 206 (404)
T TIGR03278 160 LRRFCES-CEVHAASVIIPGVNDGDVLWKTCAD---LESWG-AKALILMRFA 206 (404)
T ss_pred HHHHHhc-CCEEEEEEEeCCccCcHHHHHHHHH---HHHCC-CCEEEEEecc
Confidence 5553332 2122333444433322222334444 44433 5578887775
No 115
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=29.54 E-value=2.8e+02 Score=25.60 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 77 YCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+........++|.+.|+-||+++ |-.+ -.+.-++...+.+++|+++|++= +|..+.+++++..
T Consensus 55 p~R~~~e~~~~I~~dL~WLGl~w-D~~~----~qSdr~~~y~~~a~~Li~~G~AY---~C~cs~eel~~~r 117 (523)
T PLN03233 55 PSKEKAEFEESIIEDLGKIEIKP-DSVS----FTSDYFEPIRCYAIILIEEGLAY---MDDTPQEEMKKER 117 (523)
T ss_pred CCccchHHHHHHHHHHHHhCCCC-CCCc----cccccHHHHHHHHHHHHHcCCeE---ecCCCHHHHHHHH
Confidence 34567778999999999999985 5221 12234667889999999999863 5777888887665
No 116
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=29.49 E-value=2.7e+02 Score=23.37 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=12.4
Q ss_pred HHHHHHcCCCeEeCCCC
Q 048467 22 IHHAIDSGITILDTSDA 38 (198)
Q Consensus 22 l~~A~~~Gi~~~DtA~~ 38 (198)
+..=+..|+|+||--..
T Consensus 36 i~~QL~~GiRyfDlRv~ 52 (281)
T cd08620 36 VSTQLALGARYFDFRPG 52 (281)
T ss_pred HHHHHhcCcEEEEEEee
Confidence 45567899999987433
No 117
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=29.45 E-value=2.8e+02 Score=23.53 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 77 YCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
.........+++.+.|+.||+++=.-.+..+ ...+...+++++|+++|++= .|..+.+++++..
T Consensus 45 ~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS----~r~~~Y~~~~~~L~~~g~aY---~C~Csr~~l~~~r 108 (314)
T PF00749_consen 45 PERCRPEFYDAILEDLRWLGLEWDYGPYYQS----DRLEIYQEAAEKLIDKGKAY---PCFCSREELKAAR 108 (314)
T ss_dssp TTTCHHHHHHHHHHHHHHHT---STCEEEGG----GGHHHHHHHHHHHHHTTSEE---EEESEHHHHHHHH
T ss_pred cccchhhHHHHHHhheeEEEEecCCeEEeHH----HHHHHHHHHHHHHhhcCCCc---cccCCHHHHHHHH
Confidence 3466788899999999999987531222221 23556788999999999973 3444566666554
No 118
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=29.02 E-value=1.2e+02 Score=23.55 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=28.6
Q ss_pred cceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecC
Q 048467 100 IDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSE 137 (198)
Q Consensus 100 lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 137 (198)
-+|++++....+..-++-++.|.+++.+|++|++-+--
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~ 115 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGL 115 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeee
Confidence 45667765555555577899999999999999976643
No 119
>PHA02820 phospholipase-D-like protein; Provisional
Probab=28.72 E-value=4.2e+02 Score=23.56 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=45.9
Q ss_pred hHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCH-----HHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHH
Q 048467 45 EILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDP-----AYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIG 119 (198)
Q Consensus 45 E~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~-----~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~ 119 (198)
+..+-.+|.. -++.|.|+|=...... ...+. ..|..++...-..=|+ .|-+++=+|++..........
T Consensus 220 ~~~~l~~I~~-Ak~~I~I~tpyfvP~~-----~~~~~~~~yw~~i~~AL~~AA~~RGV-~VriLvp~~~d~~~~~~a~~~ 292 (424)
T PHA02820 220 LTALLSCIRN-ASKFVYVSVMNFIPII-----YSKAGKILFWPYIEDELRRAAIDRKV-SVKLLISCWQRSSFIMRNFLR 292 (424)
T ss_pred HHHHHHHHHH-HhhEEEEEEcccccee-----eccCCcccchHHHHHHHHHHHHhCCC-EEEEEEeccCCCCccHHHHHH
Confidence 3555556665 6788999987654320 00111 3466666543333455 366666667766554556778
Q ss_pred HHHHHHHcC-cC
Q 048467 120 ELKKLVEEG-KI 130 (198)
Q Consensus 120 ~l~~l~~~G-~i 130 (198)
.|.+|.+.| +|
T Consensus 293 ~l~~L~~~gv~I 304 (424)
T PHA02820 293 SIAMLKSKNINI 304 (424)
T ss_pred HHHHHhccCceE
Confidence 888888777 44
No 120
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=28.69 E-value=2.8e+02 Score=21.54 Aligned_cols=119 Identities=11% Similarity=0.047 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh-------ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHH
Q 048467 16 SDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA-------RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAAC 88 (198)
Q Consensus 16 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~-------~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~ 88 (198)
+++.+++..++..|-+.+ .||.|.|-. ++..+.. ..|..+.+..-...... .....+.. ....+
T Consensus 31 ~~a~~~i~~al~~~~rI~----i~G~G~S~~-~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~-~~~~~d~~---~~~~~ 101 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVL----SCGNGGSHC-DAMHFAEELTGRYRENRPGYPAIAISDVSHL-SCVSNDFG---YDYVF 101 (192)
T ss_pred HHHHHHHHHHHHCCCEEE----EEeCcHHHH-HHHHHHHHhcccccCCCCCceEEecCcHHHH-hhhhccCC---HHHHH
Confidence 567788888888887766 788777744 4554442 12222221110000000 00000011 11122
Q ss_pred HHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 89 EARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 89 ~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
...+..+. +.=|++++-+....+ .++.++++.+++.| ++-|++++.....+.+..
T Consensus 102 ~~~~~~~~-~~~Dv~I~iS~SG~t--~~~i~~~~~ak~~g-~~iI~iT~~~~s~l~~~a 156 (192)
T PRK00414 102 SRYVEAVG-REGDVLLGISTSGNS--GNIIKAIEAARAKG-MKVITLTGKDGGKMAGLA 156 (192)
T ss_pred HHHHHHhC-CCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEeCCCCChhHHhC
Confidence 22333333 556888876655433 57899999999997 899999998777776644
No 121
>PRK00915 2-isopropylmalate synthase; Validated
Probab=28.68 E-value=4.6e+02 Score=23.96 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCCeE---eCCCCCCCCChhHHHHHHhhh-ccCCcEEEEEeeccccCCCCcccCCC
Q 048467 5 IKLSFFHPKPKSDTIALIHHAIDSGITIL---DTSDAYGPHTNEILPGKALKA-RYRGRVELATKFGIRYEDGQYSYCGD 80 (198)
Q Consensus 5 ~~~~~g~~~~~~~~~~~l~~A~~~Gi~~~---DtA~~Yg~g~sE~~~G~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~ 80 (198)
++...+.+.+.+.+.++++.+.+.|...| ||...--+..-..++....+. ..++++-|....
T Consensus 138 f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~-------------- 203 (513)
T PRK00915 138 FSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHC-------------- 203 (513)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEe--------------
Q ss_pred HHHHHHHHHHHHHhc--CCCccceEEec--cCCCCCChHHHHHHHHHHHHc-CcCcEEEecCCCHHHHHHHc--------
Q 048467 81 PAYVRAACEARLKRL--DVDCIDLYYQH--RIDTKVPIEVTIGELKKLVEE-GKIKYIGLSEASASTIRRAR-------- 147 (198)
Q Consensus 81 ~~~i~~~~~~sL~~L--~~~~lDl~~lh--~p~~~~~~~~~~~~l~~l~~~-G~ir~iGvSn~~~~~~~~~~-------- 147 (198)
.+..--++.++|..+ |.+++|.-+.- .-..+.+.+++...|+..... |. -.+.+...+.++.
T Consensus 204 HND~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~L~~~~~~~g~-----~~~idl~~l~~~s~~v~~~~~ 278 (513)
T PRK00915 204 HNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRKDIYGV-----ETGINTEEIYRTSRLVSQLTG 278 (513)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHhhhcccCC-----CCCcCHHHHHHHHHHHHHHhC
Q ss_pred -CCcccccccCceeeeeccCCCCcccccCceeeeecccc
Q 048467 148 -HPSNNSCAVGMVLVVTRCGGRDCSYLQGTWHWNCCVQS 185 (198)
Q Consensus 148 -~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 185 (198)
.+....|.+.-.......|-+.-+++-....|+..+++
T Consensus 279 ~~~~~~~PivG~~aF~h~sGiH~dgi~k~~~~Ye~~~Pe 317 (513)
T PRK00915 279 MPVQPNKAIVGANAFAHESGIHQDGVLKNRETYEIMTPE 317 (513)
T ss_pred CCCCCCCCccChhHHHhccchhHHHHcCCcccccccCHH
No 122
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=28.62 E-value=3.7e+02 Score=22.96 Aligned_cols=96 Identities=14% Similarity=-0.018 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCC-------CCh---hHH------HHHHhhh--ccCCcEEEEEeeccccCCCCc
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGP-------HTN---EIL------PGKALKA--RYRGRVELATKFGIRYEDGQY 75 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-------g~s---E~~------~G~~l~~--~~R~~~~i~tK~~~~~~~~~~ 75 (198)
.++...++=+..+++|-..|.|=.+=+. +-. ..+ +.+.... ..+.+.||+.-++|..+.-..
T Consensus 51 ~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~ 130 (311)
T COG0646 51 KPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSI 130 (311)
T ss_pred CcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCc
Confidence 4566777777788999999998653221 111 111 1111111 112578888888887642222
Q ss_pred cc--CCCHHHHHHHHHHHHHhcCCCccceEEeccCC
Q 048467 76 SY--CGDPAYVRAACEARLKRLDVDCIDLYYQHRID 109 (198)
Q Consensus 76 ~~--~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~ 109 (198)
.. ..+.+.+.++..+..+.|=-.=+|++++.-..
T Consensus 131 ~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~ 166 (311)
T COG0646 131 SPDFAVTFDELVEAYREQVEGLIDGGADLILIETIF 166 (311)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhc
Confidence 23 57899999999999999966678999988753
No 123
>COG3411 Ferredoxin [Energy production and conversion]
Probab=28.52 E-value=58 Score=21.04 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=18.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcCC
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGI 30 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi 30 (198)
||++ ++++.|.++++.-+..|=
T Consensus 28 WY~~-V~p~~a~rIv~~hl~~Gr 49 (64)
T COG3411 28 WYTR-VDPEDARRIVQSHLLGGR 49 (64)
T ss_pred eEec-cCHHHHHHHHHHHHhCCC
Confidence 6676 999999999999998773
No 124
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=28.47 E-value=3.3e+02 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCcCcEEEecCCC
Q 048467 116 VTIGELKKLVEEGKIKYIGLSEAS 139 (198)
Q Consensus 116 ~~~~~l~~l~~~G~ir~iGvSn~~ 139 (198)
++++.+.++++.|.---+|+||-+
T Consensus 186 ~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 186 ELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHhCCCcEEEEecccH
Confidence 568888888888888899999964
No 125
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.42 E-value=81 Score=23.39 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCccceEEecc----CCCCCChHHHHHHHHHHHHcCcCcEEEecC
Q 048467 84 VRAACEARLKRLDVDCIDLYYQHR----IDTKVPIEVTIGELKKLVEEGKIKYIGLSE 137 (198)
Q Consensus 84 i~~~~~~sL~~L~~~~lDl~~lh~----p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 137 (198)
-|.+|-+.|....-+.+....|+. -.+..+...++++|+.|.+.|.|+.+-+.+
T Consensus 18 qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~ 75 (148)
T PRK09462 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75 (148)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 444555555443223444443332 123456678999999999999999997754
No 126
>PLN02775 Probable dihydrodipicolinate reductase
Probab=28.36 E-value=2.5e+02 Score=23.74 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
..++..|..+.-+|.|++++..- ..+.+.+-++.+.+.|+--=+|.+.|+.++++++.
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT----~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYT----LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Confidence 34555665554457887777763 34668889999999999999999999999987766
No 127
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=28.28 E-value=3.8e+02 Score=22.95 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=24.7
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCC
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTS 36 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 36 (198)
.+...+.++..++++..-++|+..|+..
T Consensus 17 ~~~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 5666788999999999999999999984
No 128
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=28.15 E-value=92 Score=26.13 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhcCCCccc--e-EEeccCCCCCChHHHHHHHHHHHHcCcCcE
Q 048467 81 PAYVRAACEARLKRLDVDCID--L-YYQHRIDTKVPIEVTIGELKKLVEEGKIKY 132 (198)
Q Consensus 81 ~~~i~~~~~~sL~~L~~~~lD--l-~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~ 132 (198)
.+...+.+.+.+++||+. .| . +.-+.| .-.+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGIS-YDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCcc-ccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 455678889999999984 33 3 333332 224678999999999999865
No 129
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=28.14 E-value=1.9e+02 Score=21.14 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCCeEeCCCCCC
Q 048467 19 IALIHHAIDSGITILDTSDAYG 40 (198)
Q Consensus 19 ~~~l~~A~~~Gi~~~DtA~~Yg 40 (198)
...+..+++.|+|+||.--.++
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~ 52 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDG 52 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccC
Confidence 4678899999999999754443
No 130
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=28.05 E-value=3e+02 Score=21.69 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARL 92 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 92 (198)
.++++-.+++..+++.|..++|.=-... .+...-.......+.+++++-.-.... .+.+.+.+.++..
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~---~~~~~~~~~~~~~~~~iI~S~H~f~~t--------p~~~~l~~~~~~~- 139 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLF---PDDLKSRLAARKGGTKIILSYHDFEKT--------PSWEELIELLEEM- 139 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCC---HHHHHHHHHHHHTTSEEEEEEEESS-----------THHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccc---hhHHHHHHHHhhCCCeEEEEeccCCCC--------CCHHHHHHHHHHH-
Confidence 5678899999999999999999744322 222111222224567788877743222 3344455544443
Q ss_pred HhcCCCccceEEeccCCCCCChHHHHHHHHHHHHc--CcCcEEEecCC
Q 048467 93 KRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEE--GKIKYIGLSEA 138 (198)
Q Consensus 93 ~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~ 138 (198)
..+|.|.+=+.....- ..+....++...++.+. ..+-.++....
T Consensus 140 ~~~gadivKia~~~~~--~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~ 185 (224)
T PF01487_consen 140 QELGADIVKIAVMANS--PEDVLRLLRFTKEFREEPDIPVIAISMGEL 185 (224)
T ss_dssp HHTT-SEEEEEEE-SS--HHHHHHHHHHHHHHHHHTSSEEEEEEETGG
T ss_pred HhcCCCeEEEEeccCC--HHHHHHHHHHHHHHhhccCCcEEEEEcCCC
Confidence 4677666655444321 12344556666666654 44555555554
No 131
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.66 E-value=1.4e+02 Score=21.26 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCc----------ccCCCHHHHHHHHHHHHH
Q 048467 24 HAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQY----------SYCGDPAYVRAACEARLK 93 (198)
Q Consensus 24 ~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~----------~~~~~~~~i~~~~~~sL~ 93 (198)
-+++.|.-|+-|-..|.-|+ |.++--.|-. ..+++++++|+.+..+.++. ..+-.-..++.+|+.-|.
T Consensus 28 pfl~nGglFVpTnk~y~iG~-evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~vr~~IE~~Lg 105 (117)
T COG3215 28 PFLENGGLFVPTNKVYSIGE-EVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLKVRNQIETLLG 105 (117)
T ss_pred HHHhcCcEEcccCCccccch-hhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhhHHHHHHHHHH
Confidence 45689999999999998432 2222222222 45799999999765533211 111223457777877774
No 132
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=27.57 E-value=3.9e+02 Score=22.85 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=50.9
Q ss_pred CCChHHHHHHHH-------HHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccCCCHH
Q 048467 12 PKPKSDTIALIH-------HAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYCGDPA 82 (198)
Q Consensus 12 ~~~~~~~~~~l~-------~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~ 82 (198)
.++.++..++++ .|.++|+..+|--...| =++.++|.. ..|.|= .+.. ......
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahG-----yLl~qFlsp~~N~RtD~-----yGGs-------lenR~r 192 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHG-----HLIDQFLSPLTNRRTDE-----YGGS-------LENRMR 192 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-----hHHHHhhCCCcCCCCCc-----CCCC-------HHHHhH
Confidence 356666555544 55668999888654433 245566555 223221 1110 112234
Q ss_pred HHHHHHHHHHHhcCCCccceEEeccCCC---CCChHHHHHHHHHHHHcCcCcEEEec
Q 048467 83 YVRAACEARLKRLDVDCIDLYYQHRIDT---KVPIEVTIGELKKLVEEGKIKYIGLS 136 (198)
Q Consensus 83 ~i~~~~~~sL~~L~~~~lDl~~lh~p~~---~~~~~~~~~~l~~l~~~G~ir~iGvS 136 (198)
.+.+-++...+..|.+..=-+=+-..+. ....+++.+.+..|.+.|.+.+|=||
T Consensus 193 ~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 193 FLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 4455555555555543211111111111 12245566666666666656666554
No 133
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=27.19 E-value=3.6e+02 Score=22.34 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHHcC-CCeEeC---CCC-----CCCCChhHHHHHHhhhccC-CcEEEEEeeccccCCCCcccCCCHHH
Q 048467 14 PKSDTIALIHHAIDSG-ITILDT---SDA-----YGPHTNEILPGKALKARYR-GRVELATKFGIRYEDGQYSYCGDPAY 83 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~-----Yg~g~sE~~~G~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~ 83 (198)
+.++..++.+.+.+.| +..|+- +++ +..+.+.+.+-+.++...+ -++-|..|+.+.. +.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-----------~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV-----------TD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc-----------hh
Confidence 5677888888888998 999875 111 1223556667776666322 2678999997432 12
Q ss_pred HHHHHHHHHHhcCCCccceEE-eccC--CCC-------------C-C--hHHHHHHHHHHHHcCcCcEEEecCC-CHHHH
Q 048467 84 VRAACEARLKRLDVDCIDLYY-QHRI--DTK-------------V-P--IEVTIGELKKLVEEGKIKYIGLSEA-SASTI 143 (198)
Q Consensus 84 i~~~~~~sL~~L~~~~lDl~~-lh~p--~~~-------------~-~--~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~~ 143 (198)
+. .+-..++..|.|.+++.= ++.. +.. . + ..-.++.+.++++.=.+--||+... +.+++
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 22 234457777877776521 0111 000 0 0 0114566666666556888999887 78888
Q ss_pred HHHc
Q 048467 144 RRAR 147 (198)
Q Consensus 144 ~~~~ 147 (198)
.+++
T Consensus 250 ~~~l 253 (301)
T PRK07259 250 IEFI 253 (301)
T ss_pred HHHH
Confidence 8887
No 134
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.62 E-value=4.2e+02 Score=22.89 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=25.4
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEeCCC
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITILDTSD 37 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~ 37 (198)
.|...+.++..++++...+.|+..|+...
T Consensus 15 ~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 15 PGVSLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 56778889999999999999999999754
No 135
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=26.61 E-value=1.1e+02 Score=26.41 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCC-eEeCCCCCCCCChhHHHHHHhhh-ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhc
Q 048467 18 TIALIHHAIDSGIT-ILDTSDAYGPHTNEILPGKALKA-RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRL 95 (198)
Q Consensus 18 ~~~~l~~A~~~Gi~-~~DtA~~Yg~g~sE~~~G~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 95 (198)
..+.|++....||. +|| .-| -.++-..|.. ..+.+|.++.-++-... -+++.+...-....+++
T Consensus 212 ~~~aL~r~~P~GIDiYfe---NVG----G~~lDavl~nM~~~gri~~CG~ISqYN~-------~~~~~~~~l~~ii~Kr~ 277 (343)
T KOG1196|consen 212 LSAALKRCFPEGIDIYFE---NVG----GKMLDAVLLNMNLHGRIAVCGMISQYNL-------ENPEGLHNLSTIIYKRI 277 (343)
T ss_pred HHHHHHHhCCCcceEEEe---ccC----cHHHHHHHHhhhhccceEeeeeehhccc-------cCCccccchhhheeeeE
Confidence 44555555555665 444 222 1223333333 45677777776653221 11222333333334555
Q ss_pred CCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEE
Q 048467 96 DVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYI 133 (198)
Q Consensus 96 ~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i 133 (198)
.++- .+.+. ......+.++.|..++++|||+++
T Consensus 278 ~iqg--flv~d---~~d~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 278 RIQG--FLVSD---YLDKYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred Eeee--EEeec---hhhhhHHHHHHHHHHHhcCceEEe
Confidence 4432 11111 122346788999999999999976
No 136
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=26.25 E-value=3.7e+02 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHc--CcCcEEEecCCC
Q 048467 114 IEVTIGELKKLVEE--GKIKYIGLSEAS 139 (198)
Q Consensus 114 ~~~~~~~l~~l~~~--G~ir~iGvSn~~ 139 (198)
..+++++++.+++. |.=--+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 34678899999988 989999999975
No 137
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=26.17 E-value=5.1e+02 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeCCCCCC
Q 048467 12 PKPKSDTIALIHHAIDSGITILDTSDAYG 40 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 40 (198)
+.+.+...++++.|.+.|.+.|--++..|
T Consensus 235 Rtd~efl~~~~~~a~~~Gad~I~l~DTvG 263 (503)
T PLN03228 235 RSDKEFLCKILGEAIKAGATSVGIADTVG 263 (503)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 34455555555555555555553333333
No 138
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=26.15 E-value=1.8e+02 Score=26.69 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=42.9
Q ss_pred HHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 90 ARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 90 ~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
..-+|+.+.|+|.+. .+++++++-.++.+++|+...||+-.--.+-+++++
T Consensus 193 ri~kR~~~gyld~~~-------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~ 243 (545)
T TIGR01228 193 RIDKRLETKYCDEQT-------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELL 243 (545)
T ss_pred HHHHHHhcCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHH
Confidence 445778889998642 467899999999999999999999998888888877
No 139
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.02 E-value=1.7e+02 Score=28.69 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCc--cceEEeccCCCCCCh---HHHHHHHHHHHHcCcCcEEEecCCCHHHHHH
Q 048467 85 RAACEARLKRLDVDC--IDLYYQHRIDTKVPI---EVTIGELKKLVEEGKIKYIGLSEASASTIRR 145 (198)
Q Consensus 85 ~~~~~~sL~~L~~~~--lDl~~lh~p~~~~~~---~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~ 145 (198)
-=++.-+|..+-..+ ++++++.-|....+. +..+.+|+.+... ++.|||-+|..+-.+.
T Consensus 825 sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e~ 888 (908)
T COG0419 825 SLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKER 888 (908)
T ss_pred HHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHh
Confidence 344455555554455 999999999877654 4578888888887 8899999988766544
No 140
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=25.99 E-value=1.8e+02 Score=20.97 Aligned_cols=53 Identities=30% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCc
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIK 131 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir 131 (198)
.....+...++..++.-....+-=-.+-.|+..--.++..+.|.+|+++||+.
T Consensus 53 ~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 53 RDRSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred EecccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCc
Confidence 34556777777777766655542123344555455678999999999999985
No 141
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=25.96 E-value=3.8e+02 Score=22.09 Aligned_cols=82 Identities=13% Similarity=0.038 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCC--ChhHHHHHHhhh---ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHH
Q 048467 16 SDTIALIHHAIDSGITILDTSDAYGPH--TNEILPGKALKA---RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEA 90 (198)
Q Consensus 16 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--~sE~~~G~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (198)
+.+.++++.|-+.|+...=++..|-++ .....+-+.++. ..-+.+.|.--++. .+|+.+.+-++.
T Consensus 119 ~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~----------~~P~~v~~lv~~ 188 (273)
T cd07941 119 AMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGG----------TLPHEIAEIVKE 188 (273)
T ss_pred HHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC----------CCHHHHHHHHHH
Confidence 446678888888898643223333111 234444555443 23344555544443 568888888888
Q ss_pred HHHhcCCCccceEEeccCCC
Q 048467 91 RLKRLDVDCIDLYYQHRIDT 110 (198)
Q Consensus 91 sL~~L~~~~lDl~~lh~p~~ 110 (198)
..+.++ + +. +-+|..+.
T Consensus 189 l~~~~~-~-~~-l~~H~Hnd 205 (273)
T cd07941 189 VRERLP-G-VP-LGIHAHND 205 (273)
T ss_pred HHHhCC-C-Ce-eEEEecCC
Confidence 888875 1 22 45566543
No 142
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=25.60 E-value=4.4e+02 Score=22.71 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh----ccC---CcEEEEEeeccccCCCCcccCCCHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA----RYR---GRVELATKFGIRYEDGQYSYCGDPAYVR 85 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~----~~R---~~~~i~tK~~~~~~~~~~~~~~~~~~i~ 85 (198)
.+.++...+++.|++.|++=+=-+ | .|.++-+-|.. ..+ .++-++|-.. ..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---G---GEPllR~dl~eIi~~l~~~~~~~islTTNG~----------------~L 100 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---G---GEPLLRKDLDEIIARLARLGIRDLSLTTNGV----------------LL 100 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---C---CCchhhcCHHHHHHHHhhcccceEEEecchh----------------hH
Confidence 478999999999999999987633 4 56666555554 222 4455554432 34
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCC--------CChHHHHHHHHHHHHcCc----CcEEEecCCCHHHHHHHc
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTK--------VPIEVTIGELKKLVEEGK----IKYIGLSEASASTIRRAR 147 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~~~~~~ 147 (198)
......|+.-|++.|. +-+|..++. ..++++++.+++..+.|. |..+=+-+.+-+++..++
T Consensus 101 ~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~ 173 (322)
T COG2896 101 ARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLL 173 (322)
T ss_pred HHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHH
Confidence 4456667777776665 344554432 235778888999988875 456667778888888877
No 143
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=25.55 E-value=1.4e+02 Score=23.76 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcC---
Q 048467 20 ALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLD--- 96 (198)
Q Consensus 20 ~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--- 96 (198)
+++..-++-|-+.+|-.--.| + +-+.|+. .+ ++.. .+ .+.+.+.+.+++++-+.-.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG----~--LL~~L~~-~k-~v~g---~G---------vEid~~~v~~cv~rGv~Viq~Dl 64 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG----E--LLAYLKD-EK-QVDG---YG---------VEIDPDNVAACVARGVSVIQGDL 64 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch----H--HHHHHHH-hc-CCeE---EE---------EecCHHHHHHHHHcCCCEEECCH
Confidence 456667788999999654322 1 2344444 11 1110 11 23566667666665554444
Q ss_pred --------CCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 97 --------VDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 97 --------~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
-+..|.+.+..-- ..+....+.|+++.+-|+---|++.||..+..+-.+
T Consensus 65 d~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l 121 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQL 121 (193)
T ss_pred HHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHH
Confidence 3344444443210 112334556778888888888999999988766655
No 144
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=25.35 E-value=3.5e+02 Score=21.54 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=58.1
Q ss_pred CChH-HHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHH-----HH
Q 048467 13 KPKS-DTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYV-----RA 86 (198)
Q Consensus 13 ~~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i-----~~ 86 (198)
++.. +..++++.|.+.|++-+-+.+.|. ....+.+.. .+-++-+..++.... ...+.- ..
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~-~~~~~~~vi~fp~g~--------~~~~~k~~~~~~~ 80 (236)
T PF01791_consen 15 MTGEEDIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAG-SGVKVGLVIGFPFGT--------STTEPKGYDQIVA 80 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTT-STSEEEEEESTTTSS--------STHHHHTCEEEHH
T ss_pred CCchhhHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhc-cccccceEEEeCCCC--------CccccccccchHH
Confidence 3444 789999999999999988777664 222333322 122444444443221 223322 45
Q ss_pred HHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHc
Q 048467 87 ACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEE 127 (198)
Q Consensus 87 ~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~ 127 (198)
+++.. -++|.+-+|+++-..+..+...++..+.+.+++++
T Consensus 81 ~ve~A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~ 120 (236)
T PF01791_consen 81 EVEEA-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEE 120 (236)
T ss_dssp HHHHH-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCceeeeeccccccccccHHHHHHHHHHHHHH
Confidence 55555 46889999998888554444455555555555544
No 145
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.32 E-value=5.6e+02 Score=23.91 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.0
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEeCC
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGITILDTS 36 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 36 (198)
.++...+.++..+++....++|+..|+..
T Consensus 13 ~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~ 41 (582)
T TIGR01108 13 LFATRMRTEDMLPIAEKLDDVGYWSLEVW 41 (582)
T ss_pred cCCccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 34556788889999999999999999874
No 146
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=25.01 E-value=96 Score=19.72 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHcCcCcEEEecCC
Q 048467 113 PIEVTIGELKKLVEEGKIKYIGLSEA 138 (198)
Q Consensus 113 ~~~~~~~~l~~l~~~G~ir~iGvSn~ 138 (198)
+.+.+-.-|+.|+.+|+|+.+...+.
T Consensus 27 s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 27 SPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp -HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred CHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 45567778899999999999988764
No 147
>PRK10200 putative racemase; Provisional
Probab=24.98 E-value=3.6e+02 Score=21.60 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhcCCCccceEEeccCCCC------------CChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHH
Q 048467 80 DPAYVRAACEARLKRLDVDCIDLYYQHRIDTK------------VPIEVTIGELKKLVEEGKIKYIGLSEASASTIRR 145 (198)
Q Consensus 80 ~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~ 145 (198)
+.+..++-++..-.+.+.++.+.+.+|.++-. .+.....+.++.|.+.| ++.|-+..-+.-.+.+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~ 91 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVAD 91 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHH
Confidence 45556666666667788889999999997421 23345667777887777 7888887765444333
No 148
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=24.91 E-value=3.7e+02 Score=21.61 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARL 92 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL 92 (198)
.++++..++.+.++++|..|+=|+.-|+.|..-...-+.+++.-+.++-|-.=.+... .+...+-++.--
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGGIrt----------~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGGIRT----------LEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCCcCC----------HHHHHHHHHcCc
Q ss_pred HhcCCCc
Q 048467 93 KRLDVDC 99 (198)
Q Consensus 93 ~~L~~~~ 99 (198)
.++|+++
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
No 149
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.85 E-value=4e+02 Score=23.76 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCCeEeCCCCC--CCCChhHHHHHH---hhh-c-cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHH
Q 048467 18 TIALIHHAIDSGITILDTSDAY--GPHTNEILPGKA---LKA-R-YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEA 90 (198)
Q Consensus 18 ~~~~l~~A~~~Gi~~~DtA~~Y--g~g~sE~~~G~~---l~~-~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (198)
..+.++.|-+.|+.++=+-+-| +.+..|+.+-+. |.. . ....+.|.---.+.. ......+.+.+.+-++.
T Consensus 220 ~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~---g~~lG~~~eeL~~Iid~ 296 (413)
T PTZ00372 220 FLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQ---KNSVGSKFEDLRDIIAL 296 (413)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCC---CCcccCCHHHHHHHHHh
Confidence 5567778888899976654433 333334433333 322 1 122233332211111 11233567777777776
Q ss_pred HH--HhcCCCccceEEeccCCCCC----ChHHHHHHHHHHHHcCcCcEEEec
Q 048467 91 RL--KRLDVDCIDLYYQHRIDTKV----PIEVTIGELKKLVEEGKIKYIGLS 136 (198)
Q Consensus 91 sL--~~L~~~~lDl~~lh~p~~~~----~~~~~~~~l~~l~~~G~ir~iGvS 136 (198)
+- .++|+ ++|..-++...++. .++++++.++++.-..++++|=+.
T Consensus 297 v~~~~rlGv-CLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLN 347 (413)
T PTZ00372 297 VEDKSRVGV-CLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLN 347 (413)
T ss_pred cCCcCCeEE-EEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEE
Confidence 53 46775 77877777655432 345566666555533456555554
No 150
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.73 E-value=1.9e+02 Score=19.18 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=31.4
Q ss_pred hcCCCccceEEeccCCCCCChHHHHHHHHHHHHcC-cCcEEEecCC-CHHHHHHHc
Q 048467 94 RLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEG-KIKYIGLSEA-SASTIRRAR 147 (198)
Q Consensus 94 ~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~-~~~~~~~~~ 147 (198)
.+.....|++++....+..... +.++.+++.+ .++-|-+|+. +.....+++
T Consensus 38 ~~~~~~~d~iiid~~~~~~~~~---~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~ 90 (112)
T PF00072_consen 38 LLKKHPPDLIIIDLELPDGDGL---ELLEQIRQINPSIPIIVVTDEDDSDEVQEAL 90 (112)
T ss_dssp HHHHSTESEEEEESSSSSSBHH---HHHHHHHHHTTTSEEEEEESSTSHHHHHHHH
T ss_pred HhcccCceEEEEEeeecccccc---ccccccccccccccEEEecCCCCHHHHHHHH
Confidence 3333449999988765554444 4445555544 7788888866 455566555
No 151
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=24.66 E-value=61 Score=23.86 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCCeEeCCCCCC
Q 048467 20 ALIHHAIDSGITILDTSDAYG 40 (198)
Q Consensus 20 ~~l~~A~~~Gi~~~DtA~~Yg 40 (198)
.-+...++.|+|+||---.++
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEcC
Confidence 567889999999999654443
No 152
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=24.59 E-value=5.1e+02 Score=23.15 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHHHHc-CCCeEeCC--C-CCCCCChhH--HHHHHhhhccCC-cEEEEEeeccccCCCCcccCCCHHHHH
Q 048467 13 KPKSDTIALIHHAIDS-GITILDTS--D-AYGPHTNEI--LPGKALKARYRG-RVELATKFGIRYEDGQYSYCGDPAYVR 85 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~-Gi~~~DtA--~-~Yg~g~sE~--~~G~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~i~ 85 (198)
.+.++..+++++..+. +++-+=-+ + ..- ..+. .+-+.|++++.- .+-|.|+..... +..|.
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll--~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~----------P~RIT 205 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLL--SDDYLDWILTELRAIPHVEVIRIGTRVPVVL----------PQRIT 205 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccC--ChHHHHHHHHHHhhcCCCceEEEeecccccc----------ccccC
Confidence 4678888888888774 88733222 1 111 1211 223334444433 366778765432 34455
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEe-------cCCCHHHHHHHc
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGL-------SEASASTIRRAR 147 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGv-------Sn~~~~~~~~~~ 147 (198)
..+-+.|++.+. -.+.+|...+..-..++.++++.|++.|.. ++. .|=+++.+.++.
T Consensus 206 ~ell~~Lk~~~~---~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~--l~nQsVLLkGVND~~~~l~~L~ 269 (417)
T TIGR03820 206 DELVAILKKHHP---VWLNTHFNHPREITASSKKALAKLADAGIP--LGNQSVLLAGVNDCPRIMKKLV 269 (417)
T ss_pred HHHHHHHHhcCC---eEEEEeCCChHhChHHHHHHHHHHHHcCCE--EEeeceEECCcCCCHHHHHHHH
Confidence 566666776653 334567654433457899999999999953 222 233556555555
No 153
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.54 E-value=3.7e+02 Score=21.47 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeEeCCCC
Q 048467 10 FHPKPKSDTIALIHHAIDSGITILDTSDA 38 (198)
Q Consensus 10 g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~ 38 (198)
+...+.++..++++...+.|+..|+....
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 34457899999999999999999997643
No 154
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=24.47 E-value=5.4e+02 Score=23.43 Aligned_cols=134 Identities=7% Similarity=0.081 Sum_probs=76.1
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChh---HHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHH
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNE---ILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYV 84 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE---~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i 84 (198)
.||. +.-+...+....-+.|+ -|-...|. |..| .++.+++.+.....-.|........ .+..-+.+....+
T Consensus 206 ~~g~--~~~e~~~L~~~~~~~~l--~~rv~i~p-GADEvg~~LlaRa~n~~~~~~P~v~v~Ys~~~-g~~~vp~YEd~pl 279 (497)
T PF13552_consen 206 PYGQ--TAMEQRELEAYIEELGL--SDRVMIYP-GADEVGLLLLARAYNEYKGYKPRVYVRYSSGN-GADTVPPYEDRPL 279 (497)
T ss_pred CCCc--CHHHHHHHHHHHHhcCC--CCceeeeC-ChhHHHHHHHHHHHHHhcCCCceEEEEeCCCC-CCccCCCCCCCCH
Confidence 3444 34556677777777775 33344453 3444 4666776663222333333333221 1112233455568
Q ss_pred HHHHHHHHHhcCCCccc-------eEEeccCCCCC---------------ChHHHHHHHHHHHHcCcCcE---EEecCCC
Q 048467 85 RAACEARLKRLDVDCID-------LYYQHRIDTKV---------------PIEVTIGELKKLVEEGKIKY---IGLSEAS 139 (198)
Q Consensus 85 ~~~~~~sL~~L~~~~lD-------l~~lh~p~~~~---------------~~~~~~~~l~~l~~~G~ir~---iGvSn~~ 139 (198)
.+++++-+...|..-+| ++++|.|.... ...+....+++++++|+.-+ +..+|-.
T Consensus 280 ~esv~~hI~aaGg~~~~~~~~AD~vL~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~VaiaDva~~NGa 359 (497)
T PF13552_consen 280 GESVKEHIRAAGGVLVDSPEEADLVLAVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAIADVAYANGA 359 (497)
T ss_pred HHHHHHHHHhcCCEEcCCCCCCCEEEEEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEEEEcCcCCCc
Confidence 88899988888864443 47788884432 34678899999999998655 2234443
Q ss_pred HHHHHHHc
Q 048467 140 ASTIRRAR 147 (198)
Q Consensus 140 ~~~~~~~~ 147 (198)
-..+.+.+
T Consensus 360 d~~L~~~L 367 (497)
T PF13552_consen 360 DNALMELL 367 (497)
T ss_pred cHHHHHHH
Confidence 44444444
No 155
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=24.36 E-value=1.8e+02 Score=21.10 Aligned_cols=61 Identities=18% Similarity=0.106 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRR 145 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~ 145 (198)
+.+.+.|.+.+++.|+..+++.-++-.+..++...+-....+..+++ | +.+--|+.++++.
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l---g----~pl~~~~~~eL~~ 73 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH---G----WPLRAFSAAQLAA 73 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh---C----CCeEEeCHHHHHh
Confidence 47899999999999999999877777788776554433333333333 1 2333445555554
No 156
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=24.12 E-value=2.4e+02 Score=25.15 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEE--------------EecCCCHHHHHHHc
Q 048467 86 AACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYI--------------GLSEASASTIRRAR 147 (198)
Q Consensus 86 ~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i--------------GvSn~~~~~~~~~~ 147 (198)
.+++...+.|.-.-.+.+.+|.-.. ==++||+|+++|.+..+ |+....+++++.+.
T Consensus 198 p~V~~~~~~Le~~G~Ev~VFHAtG~------GG~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~ 267 (403)
T PF06792_consen 198 PCVDAIRERLEEEGYEVLVFHATGT------GGRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAA 267 (403)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCC------chHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHH
Confidence 4555555555544588999998653 24789999999999854 44445555555554
No 157
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=24.09 E-value=3.2e+02 Score=20.63 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcC-cEEEecCCCHHHHHHHc
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKI-KYIGLSEASASTIRRAR 147 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~~~~~~ 147 (198)
++.--.+++.+.+-|+..|-+.+|+-. +..+...++.+.-..+.+.+.+|.. +.|-+|....-.-..+.
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 77 (148)
T PRK05571 8 DHAGFELKEEIIEHLEELGHEVIDLGP-DSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAAN 77 (148)
T ss_pred CCchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 355677999999999999998888653 3333246777888888888888877 77888887665444443
No 158
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.74 E-value=2.5e+02 Score=25.85 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCC--eEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccCCCHHH
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGIT--ILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYCGDPAY 83 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi~--~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~ 83 (198)
+||.. +..-|.+++++|-..|+. ++|||.--. .++.+++..-+- ..+.+.+|..-=... ..+.-.
T Consensus 446 GYgkd-~a~vak~AI~~a~~~gfDVvLiDTAGR~~--~~~~lm~~l~k~~~~~~pd~i~~vgealv--------g~dsv~ 514 (587)
T KOG0781|consen 446 GYGKD-AAGVAKEAIQEARNQGFDVVLIDTAGRMH--NNAPLMTSLAKLIKVNKPDLILFVGEALV--------GNDSVD 514 (587)
T ss_pred hcCCC-hHHHHHHHHHHHHhcCCCEEEEecccccc--CChhHHHHHHHHHhcCCCceEEEehhhhh--------CcHHHH
Confidence 57773 556688999999999988 789997655 566666543222 445444433221111 111212
Q ss_pred HHHHHHHHHHhcC-CCccceEEeccCCCCCChHHHHH-HHHHHHHcC-cCcEEEec
Q 048467 84 VRAACEARLKRLD-VDCIDLYYQHRIDTKVPIEVTIG-ELKKLVEEG-KIKYIGLS 136 (198)
Q Consensus 84 i~~~~~~sL~~L~-~~~lDl~~lh~p~~~~~~~~~~~-~l~~l~~~G-~ir~iGvS 136 (198)
=...+..+|.... ..-||-++|--.|. +++-+- ++...+..| -|-++|+.
T Consensus 515 q~~~fn~al~~~~~~r~id~~~ltk~dt---v~d~vg~~~~m~y~~~~pi~fvg~g 567 (587)
T KOG0781|consen 515 QLKKFNRALADHSTPRLIDGILLTKFDT---VDDKVGAAVSMVYITGKPILFVGVG 567 (587)
T ss_pred HHHHHHHHHhcCCCccccceEEEEeccc---hhhHHHHHhhheeecCCceEEEecC
Confidence 2334555565543 34688888877654 223222 333333333 35566653
No 159
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=23.60 E-value=3.6e+02 Score=21.03 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCC-CCh-h--HHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHH
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGP-HTN-E--ILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACE 89 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~s-E--~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 89 (198)
++++...+.+.|.++|..++=|+.-|.. |.+ | +.+.+.++ .. +-.|..-.. .+.+...+-++
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aGGi--------kt~~~~l~~~~ 194 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAGGI--------RTLEDALAMIE 194 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeCCC--------CCHHHHHHHHH
Confidence 4678889999999999999999866652 211 1 23333333 22 344544222 25666666666
Q ss_pred HHHHhcCC
Q 048467 90 ARLKRLDV 97 (198)
Q Consensus 90 ~sL~~L~~ 97 (198)
.-..++|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 65666665
No 160
>PRK08392 hypothetical protein; Provisional
Probab=23.56 E-value=3.7e+02 Score=21.13 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh------ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHH
Q 048467 16 SDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA------RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACE 89 (198)
Q Consensus 16 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~------~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 89 (198)
....++++.|.+.|++.|=.++|...-..+ -+-..++. ..+-++.+..-+.... ... .-.+
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~-~~~~y~~~i~~l~~~~~i~il~GiE~~~~~--------~~~----~~~~ 80 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPS-KFNAYINEIRQWGEESEIVVLAGIEANITP--------NGV----DITD 80 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchh-hHHHHHHHHHHHhhccCceEEEeEEeeecC--------Ccc----hhHH
Confidence 457899999999999999888776311111 12222222 1122334444443221 111 2222
Q ss_pred HHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEe
Q 048467 90 ARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGL 135 (198)
Q Consensus 90 ~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGv 135 (198)
..++. .||+ +.-+|........++..+.+.++.+.+.+.-+|=
T Consensus 81 ~~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 123 (215)
T PRK08392 81 DFAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGH 123 (215)
T ss_pred HHHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeC
Confidence 33443 4555 5677844322334567888888888888777764
No 161
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=23.38 E-value=1.6e+02 Score=20.73 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=33.7
Q ss_pred cCCCHHHHHHHHHHHHHhcCC--CccceEEeccCCCCCChHHHHHHHHHHHHcCc
Q 048467 77 YCGDPAYVRAACEARLKRLDV--DCIDLYYQHRIDTKVPIEVTIGELKKLVEEGK 129 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L~~--~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ 129 (198)
...+...+.+.+++.|+.-++ +-||.+..|.......-..-++++.++.....
T Consensus 20 ~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~ 74 (119)
T PF02801_consen 20 TAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSA 74 (119)
T ss_dssp SSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGG
T ss_pred cCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccc
Confidence 445788899999999998775 57888888886543222223667777776543
No 162
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=23.37 E-value=2.8e+02 Score=19.71 Aligned_cols=32 Identities=6% Similarity=0.026 Sum_probs=25.1
Q ss_pred EeccCCCCCChHHHHHHHHHHHHcCcCcEEEec
Q 048467 104 YQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLS 136 (198)
Q Consensus 104 ~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 136 (198)
.+=..|...+++...+.|+.+++.| +..+++.
T Consensus 87 v~i~aD~~~~~~~vv~v~d~~~~~G-~~~v~l~ 118 (121)
T TIGR02804 87 VTLKSDKEAKFQDFVTITDMLKAKE-HENVQIV 118 (121)
T ss_pred EEEEeCCCCCHhHHHHHHHHHHHcC-CCeEEEE
Confidence 3344567788999999999999999 5557775
No 163
>PRK15108 biotin synthase; Provisional
Probab=23.21 E-value=4.8e+02 Score=22.37 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCC-CC-CChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAY-GP-HTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEA 90 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~-g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (198)
.+.+++.+..+.+.+.|++.|-..... .+ ...-+.+-+.++..+...+.++.-.+ ..+.+.+ .
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G----------~ls~e~l-----~ 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLG----------TLSESQA-----Q 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCC----------cCCHHHH-----H
Confidence 578889999998889999988543221 11 11124455566553322333321122 1333333 3
Q ss_pred HHHhcCCCccceEEeccC------CCCCChHHHHHHHHHHHHcCcCcE
Q 048467 91 RLKRLDVDCIDLYYQHRI------DTKVPIEVTIGELKKLVEEGKIKY 132 (198)
Q Consensus 91 sL~~L~~~~lDl~~lh~p------~~~~~~~~~~~~l~~l~~~G~ir~ 132 (198)
-|+..|+|.+.+-+=-.| -....+++.++.++.+++.|.--.
T Consensus 141 ~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 141 RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 355666664433111111 012357789999999999997544
No 164
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.19 E-value=4.3e+02 Score=21.83 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeEeCCC
Q 048467 10 FHPKPKSDTIALIHHAIDSGITILDTSD 37 (198)
Q Consensus 10 g~~~~~~~~~~~l~~A~~~Gi~~~DtA~ 37 (198)
|...+.++..++++...+.|++.|+...
T Consensus 14 ~~~~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 14 KTFIPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4456788899999999999999999973
No 165
>PRK07328 histidinol-phosphatase; Provisional
Probab=23.18 E-value=4.2e+02 Score=21.62 Aligned_cols=110 Identities=11% Similarity=0.023 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHcCCCeEeCCCCCCC------------CChhHHHHHHhhh-------ccCCcEEEEEeeccccCCCCc
Q 048467 15 KSDTIALIHHAIDSGITILDTSDAYGP------------HTNEILPGKALKA-------RYRGRVELATKFGIRYEDGQY 75 (198)
Q Consensus 15 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------------g~sE~~~G~~l~~-------~~R~~~~i~tK~~~~~~~~~~ 75 (198)
.....+++++|.+.|+..+-.++|... +.+..-+-..++. ..+-+|.+..-+...+
T Consensus 17 ~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~~----- 91 (269)
T PRK07328 17 VGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYHP----- 91 (269)
T ss_pred CCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEecccC-----
Confidence 345789999999999998877776431 0111112222222 2122444444444321
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCC-------------CChHHH----HHHHHHHHHcCcCcEEEecC
Q 048467 76 SYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTK-------------VPIEVT----IGELKKLVEEGKIKYIGLSE 137 (198)
Q Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~-------------~~~~~~----~~~l~~l~~~G~ir~iGvSn 137 (198)
.-...+++.|+....||+ +.-+|..+.. .+.++. ++.+.++++.|.+.-||=-.
T Consensus 92 -------~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d 162 (269)
T PRK07328 92 -------GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPD 162 (269)
T ss_pred -------CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCcc
Confidence 133445556777666776 7777886421 112222 34577788888888777443
No 166
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.18 E-value=3.3e+02 Score=20.46 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=25.4
Q ss_pred CcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCC
Q 048467 58 GRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDV 97 (198)
Q Consensus 58 ~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~ 97 (198)
.++++..|-+.. ..+.+.+.+++...|++++.
T Consensus 86 ~DiVviar~~~~--------~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 86 GDYVVVARSAAA--------KASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CCEEEEEeCCcc--------cCCHHHHHHHHHHHHHHhCc
Confidence 477777777653 37889999999999999875
No 167
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=23.16 E-value=3.3e+02 Score=20.44 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcC-cEEEecCCCHHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKI-KYIGLSEASAST 142 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~ 142 (198)
++.-..+++.+.+-|+..|-+.+|+-- +...++.+.-..+.+.+.+|.. +.|-+|....-.
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~----~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~ 69 (142)
T PRK08621 8 DKAGFELKEVVKDYLEDNKYEVVDVTE----EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGS 69 (142)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEECCC----CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhh
Confidence 355667999999999999988888743 3335677788888888888876 667776655443
No 168
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=22.97 E-value=2.6e+02 Score=24.00 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCc--EEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHh
Q 048467 17 DTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGR--VELATKFGIRYEDGQYSYCGDPAYVRAACEARLKR 94 (198)
Q Consensus 17 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~--~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 94 (198)
...++-..-|..|.+-=+-|..+| -|+..+.+.|.+ -|++ +-|..+ .+. ...-.++++++ ++
T Consensus 14 l~~~~A~lYY~~gltQ~eIA~~Lg--iSR~~v~rlL~~-Ar~~GiV~I~i~-~~~---------~~~~~Le~~L~---~~ 77 (321)
T COG2390 14 LLARAAWLYYVEGLTQSEIAERLG--ISRATVSRLLAK-AREEGIVKISIN-SPV---------EGCLELEQQLK---ER 77 (321)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhC--CCHHHHHHHHHH-HHHCCeEEEEeC-CCC---------cchHHHHHHHH---Hh
Confidence 344555555678988888888888 899999999998 3333 335554 221 11122333332 67
Q ss_pred cCCCccceEEeccCCCCCChH----HHHHHHHHHHHcCcCcEEEecCC--CHHHHHHHcCCcc
Q 048467 95 LDVDCIDLYYQHRIDTKVPIE----VTIGELKKLVEEGKIKYIGLSEA--SASTIRRARHPSN 151 (198)
Q Consensus 95 L~~~~lDl~~lh~p~~~~~~~----~~~~~l~~l~~~G~ir~iGvSn~--~~~~~~~~~~p~~ 151 (198)
+|+++..+.-...++...... ...+.|+++.+.|.+ |||+ | +...+.+.+.|..
T Consensus 78 fgL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdv--igV~-wGrTv~a~~~~l~~~~ 137 (321)
T COG2390 78 FGLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDV--IGVG-WGRTLSAVVDNLPPAP 137 (321)
T ss_pred cCCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCE--EEEe-ccHHHHHHHHhcCcCc
Confidence 898887777665554433332 357789999999995 5665 5 3445555555443
No 169
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=22.90 E-value=3.1e+02 Score=20.10 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=41.6
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcC--CCccceEEeccCCCC-CChHHHHHHHHHHHHc
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLD--VDCIDLYYQHRIDTK-VPIEVTIGELKKLVEE 127 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~~~lDl~~lh~p~~~-~~~~~~~~~l~~l~~~ 127 (198)
.|=-+.|+-|..... ..+..+++.+.++.+... +.-.|++++-.+... .+..+..+.|..|.+.
T Consensus 46 ~RiG~~VsKK~~g~A--------V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 46 PRLGLVIGKKSVKLA--------VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred ccEEEEEecccCccH--------hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 455566666632222 557778888888887653 356899999988643 4566666666666543
No 170
>PRK10508 hypothetical protein; Provisional
Probab=22.90 E-value=2.1e+02 Score=24.55 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHH
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVE 126 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~ 126 (198)
-.+++.+.+.|.+..+++|+|.+ +++.+. .+.++.++.++-|.+
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla~ 328 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAMD 328 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHHH
Confidence 36899999999999999998877 333332 345555555554443
No 171
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.74 E-value=4.2e+02 Score=21.50 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHHHcCCCeEe-CCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHH
Q 048467 12 PKPKSDTIALIHHAIDSGITILD-TSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEA 90 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~D-tA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (198)
+.+++++..+=.+|-++|+.++= +|+.-. .|++ +.|......=+++.+..+.. .+++++.+.+.+
T Consensus 131 DlPpEEa~~~Rne~~k~gislvpLvaPsTt---deRm--ell~~~adsFiYvVSrmG~T---------G~~~svn~~l~~ 196 (268)
T KOG4175|consen 131 DLPPEEAETLRNEARKHGISLVPLVAPSTT---DERM--ELLVEAADSFIYVVSRMGVT---------GTRESVNEKLQS 196 (268)
T ss_pred cCChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHH--HHHHHhhcceEEEEEecccc---------ccHHHHHHHHHH
Confidence 45677777777888888888664 344332 4443 33443344557777777754 456667777777
Q ss_pred HHHhcC
Q 048467 91 RLKRLD 96 (198)
Q Consensus 91 sL~~L~ 96 (198)
.+++..
T Consensus 197 L~qrvr 202 (268)
T KOG4175|consen 197 LLQRVR 202 (268)
T ss_pred HHHHHH
Confidence 776653
No 172
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=22.54 E-value=2.9e+02 Score=19.63 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=42.1
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcC--CCccceEEeccCCC-CCChHHHHHHHHHHHHc
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLD--VDCIDLYYQHRIDT-KVPIEVTIGELKKLVEE 127 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~--~~~lDl~~lh~p~~-~~~~~~~~~~l~~l~~~ 127 (198)
+|--+.|+-|..... ..+..+++-+.++.+.+. +...|++++-.+.. +.+..+..+.|..|.+.
T Consensus 45 ~R~G~~VsKK~~g~A--------V~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 45 PRLGLTVAKKNVKRA--------HERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred cEEEEEEEcccCcch--------hHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 444566666633222 557778888888887653 34579999888764 34677777777776553
No 173
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.49 E-value=1.2e+02 Score=21.65 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh
Q 048467 11 HPKPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA 54 (198)
Q Consensus 11 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~ 54 (198)
...+.+.-.+++...++.|.+.=+.|..|| -+...+-.|++.
T Consensus 11 r~ys~EfK~~aV~~~~~~g~sv~evA~e~g--Is~~tl~~W~r~ 52 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEPGMTVSLVARQHG--VAASQLFLWRKQ 52 (121)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHH
Confidence 446777788999999999999999999999 799999999998
No 174
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=22.47 E-value=3.9e+02 Score=21.09 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhh--ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKA--RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEA 90 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (198)
.++++-.+++..+++.|..++|.=-. . ..+.+.+.. ....+++++-.-.... .+.+.+...+++
T Consensus 73 ~~~~~~~~ll~~~~~~~~d~vDiEl~-----~-~~~~~~~~~~~~~~~kiI~S~H~f~~t--------p~~~~l~~~~~~ 138 (225)
T cd00502 73 GSEEEYLELLEEALKLGPDYVDIELD-----S-ALLEELINSRKKGNTKIIGSYHDFSGT--------PSDEELVSRLEK 138 (225)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEec-----c-hHHHHHHHHHHhCCCEEEEEeccCCCC--------cCHHHHHHHHHH
Confidence 45777889999999999999995321 1 223333333 1345566655543221 245566655554
Q ss_pred HHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEec
Q 048467 91 RLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLS 136 (198)
Q Consensus 91 sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvS 136 (198)
+..+|.|.+-+...- ....+....++...++.....+--|+++
T Consensus 139 -~~~~gadivKla~~~--~~~~D~~~ll~~~~~~~~~~~~p~i~~~ 181 (225)
T cd00502 139 -MAALGADIVKIAVMA--NSIEDNLRLLKFTRQVKNLYDIPLIAIN 181 (225)
T ss_pred -HHHhCCCEEEEEecC--CCHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 555665555544322 1112334455555555544323333333
No 175
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=22.44 E-value=1.3e+02 Score=25.77 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCC--CccceEEeccCCCCCChHHHHHHHHHHHHcCcCc
Q 048467 83 YVRAACEARLKRLDV--DCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIK 131 (198)
Q Consensus 83 ~i~~~~~~sL~~L~~--~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir 131 (198)
...+.+.+.+++||+ ++-.-+.-+.+ .-.+.+.+.+.+|.++|.|-
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDP---EYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCH---HHHHHHHHHHHHHHHCCCEe
Confidence 346677788888887 43333333222 22456888889999998875
No 176
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.25 E-value=2.8e+02 Score=20.02 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHhcCC
Q 048467 78 CGDPAYVRAACEARLKRLDV 97 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~ 97 (198)
+.|...++..++..+++||.
T Consensus 60 giSYPTvR~rLd~ii~~lg~ 79 (113)
T PF09862_consen 60 GISYPTVRNRLDKIIEKLGY 79 (113)
T ss_pred CCCcHHHHHHHHHHHHHhCC
Confidence 47788999999999999996
No 177
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.24 E-value=5.5e+02 Score=22.69 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=49.1
Q ss_pred CCCCCCCChhHHHHHHhhh----ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCCC-----ccceEEec
Q 048467 36 SDAYGPHTNEILPGKALKA----RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDVD-----CIDLYYQH 106 (198)
Q Consensus 36 A~~Yg~g~sE~~~G~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~-----~lDl~~lh 106 (198)
...|| +|+-+-++|+. .+.+=++|.|=..+ +-+-..++...+++.-+ .+.++.++
T Consensus 64 d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~-------------~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~ 127 (435)
T cd01974 64 AAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMA-------------EVIGDDLNAFIKNAKNKGSIPADFPVPFAN 127 (435)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchH-------------hhhhccHHHHHHHHHHhccCCCCCeEEEec
Confidence 34677 56777888887 22333455544332 22333344444333221 47899999
Q ss_pred cCCCCCC----hHHHHHHHHH-HHH-------cCcCcEEEecC--CC-HHHHHHHc
Q 048467 107 RIDTKVP----IEVTIGELKK-LVE-------EGKIKYIGLSE--AS-ASTIRRAR 147 (198)
Q Consensus 107 ~p~~~~~----~~~~~~~l~~-l~~-------~G~ir~iGvSn--~~-~~~~~~~~ 147 (198)
.|+.... .+.++++|-+ +.. .++|.=||-.+ .+ .+++++++
T Consensus 128 tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL 183 (435)
T cd01974 128 TPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLL 183 (435)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHH
Confidence 8865533 2334444432 222 23455554222 23 56787777
No 178
>PLN02907 glutamate-tRNA ligase
Probab=22.20 E-value=3.8e+02 Score=25.77 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=46.5
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 76 SYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
.+........++|.+.|+-||+++ |-.. + .+.-++...+..++|+++|++= +|..+.+++++..
T Consensus 256 dp~r~~~e~~~~I~~dl~wLG~~~-d~~~-~---qS~r~~~y~~~a~~Li~~G~aY---~~~~~~~~~~~~~ 319 (722)
T PLN02907 256 NPSKESDEFVENILKDIETLGIKY-DAVT-Y---TSDYFPQLMEMAEKLIKEGKAY---VDDTPREQMRKER 319 (722)
T ss_pred CCCcCChHHHHHHHHHHHHcCCCC-CCcc-c---ccccHHHHHHHHHHHHHcCCee---ecCCCHHHHHHHH
Confidence 345667788999999999999976 5221 1 2234567889999999999874 3777777776653
No 179
>PRK10997 yieM hypothetical protein; Provisional
Probab=22.19 E-value=3.3e+02 Score=24.89 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCC---CccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEe--cCCCHHHHHH
Q 048467 83 YVRAACEARLKRLDV---DCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGL--SEASASTIRR 145 (198)
Q Consensus 83 ~i~~~~~~sL~~L~~---~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGv--Sn~~~~~~~~ 145 (198)
.+...++..++.++. ..-|++++-.-......++..+.+..|++++..|..|| +++....+.+
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~ 465 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMR 465 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHH
Confidence 366777777777753 24788888876443335778999999998766666665 4544444444
No 180
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.05 E-value=5e+02 Score=22.34 Aligned_cols=123 Identities=11% Similarity=0.104 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHcCCCeEe---C--------CCCCCCCChhHHHHHHhhhc--cCCcEEEEEeeccccCCC-Cc----
Q 048467 14 PKSDTIALIHHAIDSGITILD---T--------SDAYGPHTNEILPGKALKAR--YRGRVELATKFGIRYEDG-QY---- 75 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~D---t--------A~~Yg~g~sE~~~G~~l~~~--~R~~~~i~tK~~~~~~~~-~~---- 75 (198)
+.+...+.++.+.+.||+.|- . +..|. .+-++-++++.+ .-.++.|.|=++...... .+
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~---~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil 135 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWD---DNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVL 135 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccC---CCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeec
Confidence 567899999999999999665 2 22222 345677777762 235888999888654211 00
Q ss_pred --ccCCCHHHHHHHHHHHH--HhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 76 --SYCGDPAYVRAACEARL--KRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 76 --~~~~~~~~i~~~~~~sL--~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
..-...++++.-.+.++ .+-|.|.| . ++..++..+.++.+..++.-...++|-.++.+-.-.+.
T Consensus 136 ~~g~i~ND~Tl~~L~~~Als~A~AGADiV------A--PSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fY 203 (322)
T PRK13384 136 HNDEVDNDATVENLVKQSVTAAKAGADML------A--PSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFY 203 (322)
T ss_pred cCCcCccHHHHHHHHHHHHHHHHcCCCeE------e--cccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhc
Confidence 00112333444334333 33354322 2 34455677778877666555566888887766444433
No 181
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=22.00 E-value=3.1e+02 Score=22.48 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcE
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKY 132 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~ 132 (198)
........+++.+.|+.||+++=..+. .+...+...+++++|.++|++=.
T Consensus 46 ~R~~~~~~~~I~~dL~wlGl~wD~~~~-----QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 46 EKEEEEYVDSIKEDVKWLGIKPYKVTY-----ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred cccchHHHHHHHHHHHHcCCCCCCcee-----cccCHHHHHHHHHHHHHcCCeec
Confidence 356677889999999999986432211 12235667889999999997643
No 182
>PRK06256 biotin synthase; Validated
Probab=21.97 E-value=4e+02 Score=22.43 Aligned_cols=118 Identities=20% Similarity=0.163 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHHHHcCCCeE-eCCCCCCCCChh-HHHHHHhhhccC-CcEEEEEeeccccCCCCcccCCCHHHHHHHHH
Q 048467 13 KPKSDTIALIHHAIDSGITIL-DTSDAYGPHTNE-ILPGKALKARYR-GRVELATKFGIRYEDGQYSYCGDPAYVRAACE 89 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~g~sE-~~~G~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~ 89 (198)
.+.++..+.++.+.+.|++.| -.+..+++...+ ..+-+.++.+.+ -++-+.+-.+ ..+.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g----------~l~~e~l----- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLG----------LLTEEQA----- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCC----------cCCHHHH-----
Confidence 578889999999999998633 222223211111 234455554222 2232222111 1333333
Q ss_pred HHHHhcCCCccceEEecc-------CCCCCChHHHHHHHHHHHHcCcCcE----EEecCCCHHHHHHHc
Q 048467 90 ARLKRLDVDCIDLYYQHR-------IDTKVPIEVTIGELKKLVEEGKIKY----IGLSEASASTIRRAR 147 (198)
Q Consensus 90 ~sL~~L~~~~lDl~~lh~-------p~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~~~~~~ 147 (198)
..|+..|++.+-+- +.. ......+++.+++++.+++.|.--. +|+ +.+.+++.+.+
T Consensus 156 ~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 156 ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 34666676644321 111 1112346788899999999986322 344 55666666655
No 183
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=21.95 E-value=1.1e+02 Score=28.94 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=31.8
Q ss_pred HHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEE
Q 048467 90 ARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIG 134 (198)
Q Consensus 90 ~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iG 134 (198)
--|+.||++ |++-+++.|+. +.+....||++|+..|-+..=|
T Consensus 413 L~Lkalgi~--d~l~F~f~d~P-~~~~l~~AL~~L~~lgald~~g 454 (674)
T KOG0922|consen 413 LQLKALGIN--DPLRFPFIDPP-PPEALEEALEELYSLGALDDRG 454 (674)
T ss_pred HHHHhcCCC--CcccCCCCCCC-ChHHHHHHHHHHHhcCcccCcC
Confidence 347888987 99999998873 3466888999999887665333
No 184
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.85 E-value=3.1e+02 Score=23.48 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCC---------Ch-HH---HH-HHHHHHHHcCcCcEEEecCCCHH
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKV---------PI-EV---TI-GELKKLVEEGKIKYIGLSEASAS 141 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~---------~~-~~---~~-~~l~~l~~~G~ir~iGvSn~~~~ 141 (198)
.+.+.+.+.++..+ .|+.+.+.++.+- |.+.+ +. ++ .+ .+.+.|.+.|. ..+.+|||...
T Consensus 164 qt~~~~~~~l~~~~-~l~~~~is~y~l~-~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~~ 237 (360)
T TIGR00539 164 QTLNSLKEELKLAK-ELPINHLSAYALS-VEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGF-KQYEVSNYAKA 237 (360)
T ss_pred CCHHHHHHHHHHHH-ccCCCEEEeecce-EcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCC-ceeehhhhcCC
Confidence 56677777776655 4677777776543 11111 11 11 12 23345556675 46799998544
No 185
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.72 E-value=1.7e+02 Score=21.35 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCccceEEeccCCCCC-ChHHHHHHHHHHHHcCcCcEEEe
Q 048467 85 RAACEARLKRLDVDCIDLYYQHRIDTKV-PIEVTIGELKKLVEEGKIKYIGL 135 (198)
Q Consensus 85 ~~~~~~sL~~L~~~~lDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~ir~iGv 135 (198)
+..+...|+.+....+|.++++..+... ...+....++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 4456666666666678999998887654 34566777777777623444433
No 186
>PF14177 YkyB: YkyB-like protein
Probab=21.67 E-value=85 Score=23.44 Aligned_cols=19 Identities=58% Similarity=0.754 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCcCcEEEec
Q 048467 118 IGELKKLVEEGKIKYIGLS 136 (198)
Q Consensus 118 ~~~l~~l~~~G~ir~iGvS 136 (198)
-++|.+|+++|+.+-||+=
T Consensus 30 k~aL~Kll~E~kA~kiGlH 48 (140)
T PF14177_consen 30 KKALQKLLEEGKAKKIGLH 48 (140)
T ss_pred HHHHHHHHHcCcceEEEEe
Confidence 4689999999999999984
No 187
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=21.63 E-value=2e+02 Score=28.28 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHHHHcCCCeEeC--CCCCCCCChhHHHHHHhhhccCCcEEEEEeeccc
Q 048467 12 PKPKSDTIALIHHAIDSGITILDT--SDAYGPHTNEILPGKALKARYRGRVELATKFGIR 69 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~Dt--A~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~ 69 (198)
+++.+...+.|+..++.|++-+-. +..|-.=..|..+|+--++..-..+-+++|+.|.
T Consensus 164 k~De~alr~~Lk~l~~~G~~siav~l~HSyt~P~HE~~v~kiA~e~GF~~vSLSs~l~PM 223 (1247)
T KOG1939|consen 164 KVDEEALRQDLKELYDKGVKSIAVVLLHSYTYPDHELEVGKIAKEIGFSHVSLSSKLMPM 223 (1247)
T ss_pred cCCHHHHHHHHHHHHHcCcceEeeeeeccccCCcHHHHHHHHHHHhCccceechhccccc
Confidence 468888999999999999996544 2334333899999998887777888999998764
No 188
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=21.58 E-value=3.2e+02 Score=19.64 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=43.6
Q ss_pred CCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCC----C--ccceEEeccCCCC-CChHHHHHHHHHHH
Q 048467 57 RGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDV----D--CIDLYYQHRIDTK-VPIEVTIGELKKLV 125 (198)
Q Consensus 57 R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~----~--~lDl~~lh~p~~~-~~~~~~~~~l~~l~ 125 (198)
|=-+.|+-|+.... ..+..+++.+.++.+.+.. . ..|++++-.+... .+..+..+.|+.|.
T Consensus 47 RlG~sVSKKv~~kA--------V~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKKA--------VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCch--------hhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 55788888855332 5588899999999988753 2 5899999988653 35666666666654
No 189
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=21.52 E-value=72 Score=21.67 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCcCcEEEecCC
Q 048467 115 EVTIGELKKLVEEGKIKYIGLSEA 138 (198)
Q Consensus 115 ~~~~~~l~~l~~~G~ir~iGvSn~ 138 (198)
.....+|..|+++|.|+.+-+.+.
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 567889999999999998777664
No 190
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.52 E-value=2.6e+02 Score=23.37 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 79 GDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
++.+. +..+-+.|.++|+++|++-.+..|.......+.++.+..+.+...++...++ .+...++.++
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Confidence 44443 3446666889999999987555553222222345566666554446666655 4777788777
No 191
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.50 E-value=6.2e+02 Score=23.01 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=53.3
Q ss_pred hhHHHHHHhhh---ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChH-HHHH
Q 048467 44 NEILPGKALKA---RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIE-VTIG 119 (198)
Q Consensus 44 sE~~~G~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~-~~~~ 119 (198)
+++.+-++|.. ..+-++++.+-.+. ++-|-..++...+.++.+.++++.++.|+...... ..-.
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~ 136 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADR 136 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHH
Confidence 56667777776 12334444443332 34455556666666665568899999997654422 2222
Q ss_pred HHHHHH--------------HcCcCcEEEecCC------CHHHHHHHc
Q 048467 120 ELKKLV--------------EEGKIKYIGLSEA------SASTIRRAR 147 (198)
Q Consensus 120 ~l~~l~--------------~~G~ir~iGvSn~------~~~~~~~~~ 147 (198)
+++.++ +.+.|.-||.++. +..++++++
T Consensus 137 al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL 184 (511)
T TIGR01278 137 TLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLL 184 (511)
T ss_pred HHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 333222 2456888898763 456677766
No 192
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=21.48 E-value=2.4e+02 Score=26.00 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCCeEe--CCCCCCC--------CChhHHHHHHhhh----ccCCcEEEEEeeccccCCC----------Cc
Q 048467 20 ALIHHAIDSGITILD--TSDAYGP--------HTNEILPGKALKA----RYRGRVELATKFGIRYEDG----------QY 75 (198)
Q Consensus 20 ~~l~~A~~~Gi~~~D--tA~~Yg~--------g~sE~~~G~~l~~----~~R~~~~i~tK~~~~~~~~----------~~ 75 (198)
+-++...+.|+.-+- ||..|-+ |.-|.++.-+ ++ -.+.++|+++=++--.... .-
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aa-rk~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAA-RKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHH-HHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHH-HHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 445666677776443 3333321 3444433332 33 3467899988886422000 00
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc-CCccccc
Q 048467 76 SYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR-HPSNNSC 154 (198)
Q Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~-~p~~~~~ 154 (198)
-.+.++ ...-+|+.+.|+|.+. .++++.++-+++.+++|+...||+-.--.+.+++++ ..+.
T Consensus 185 ~vEvd~-------~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~--- 247 (546)
T PF01175_consen 185 IVEVDP-------SRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGII--- 247 (546)
T ss_dssp EEES-H-------HHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT-----
T ss_pred EEEECH-------HHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCC---
Confidence 012222 3445677788999653 458899999999999999999999998888888877 2111
Q ss_pred ccCceeeeecc-CCCCcccccCceeee
Q 048467 155 AVGMVLVVTRC-GGRDCSYLQGTWHWN 180 (198)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~~~g~~~~~ 180 (198)
+.++.=...| .+.+ |++.-.++++
T Consensus 248 -pDl~tDQTS~Hdp~~-GY~P~g~t~e 272 (546)
T PF01175_consen 248 -PDLVTDQTSAHDPLN-GYYPAGLTFE 272 (546)
T ss_dssp --SEE---SSTT-TTT-S---TT--HH
T ss_pred -CCcccCCCccccccc-cCCCCCCCHH
Confidence 1111112223 5555 7777777654
No 193
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=21.42 E-value=3.4e+02 Score=19.91 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=44.3
Q ss_pred cCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHHhcCC----CccceEEeccCCCC-CChHHHHHHHHHHHH
Q 048467 56 YRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLKRLDV----DCIDLYYQHRIDTK-VPIEVTIGELKKLVE 126 (198)
Q Consensus 56 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L~~----~~lDl~~lh~p~~~-~~~~~~~~~l~~l~~ 126 (198)
+|=-+.|+-|++. -..+.-+++-+.++++.+.. ...|++++..+... .++.+..+.|..+.+
T Consensus 47 ~RvG~~VSKKvG~---------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN---------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc---------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 4556777777653 26688899999999887643 56899999998643 456677777776655
No 194
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.21 E-value=5.9e+02 Score=22.68 Aligned_cols=59 Identities=10% Similarity=-0.137 Sum_probs=31.3
Q ss_pred cCCCHHHHHHHHHHHHHhc-CCC-ccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCC
Q 048467 77 YCGDPAYVRAACEARLKRL-DVD-CIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEAS 139 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L-~~~-~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 139 (198)
..++.+.+.+.++...+.+ |+. ..| +++..|+... +.++..-++.++=++..+++..++
T Consensus 278 R~~t~~~~~~~v~~lr~~~pgi~i~td-~IvGfPgET~---edf~~tl~~~~~~~~~~~~~f~~s 338 (445)
T PRK14340 278 RGHTIEEYLEKIALIRSAIPGVTLSTD-LIAGFCGETE---EDHRATLSLMEEVRFDSAFMFYYS 338 (445)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEecc-EEEECCCCCH---HHHHHHHHHHHhcCCCEEeeEEec
Confidence 3467788888888777653 332 123 5667776522 333333333333345566665544
No 195
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=20.90 E-value=3.5e+02 Score=19.90 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhc----CC----------CccceEEeccC--CCCCChHHHHHHHHHHHH
Q 048467 79 GDPAYVRAACEARLKRL----DV----------DCIDLYYQHRI--DTKVPIEVTIGELKKLVE 126 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L----~~----------~~lDl~~lh~p--~~~~~~~~~~~~l~~l~~ 126 (198)
..+..+++.+.++.+.. .. ..+|+.++..+ ....+.++.-+.|..|.+
T Consensus 65 V~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 65 VKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 45777888888777664 22 24799999887 333456777666666654
No 196
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=20.88 E-value=3.1e+02 Score=19.24 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCe-EeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeeccccCCCCcccCCCHHHHHHH
Q 048467 9 FFHPKPKSDTIALIHHAIDSGITI-LDTSDAYGPHTNEILPGKALKARYRGRVELATKFGIRYEDGQYSYCGDPAYVRAA 87 (198)
Q Consensus 9 ~g~~~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~ 87 (198)
|=.+.++++..+-|+..+..|.+. +.-|+.= ..|...+-.-|..... ..++..+...
T Consensus 7 ~lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r---------------~~r~~~W~mW~~p~~~-------~~~~~~Vl~e 64 (99)
T PF00101_consen 7 YLPPLTDEEIAKQVRYLLSQGWIIGIEHADPR---------------RFRTSYWQMWKLPMFG-------CTDPAQVLAE 64 (99)
T ss_dssp TSS---HHHHHHHHHHHHHTT-EEEEEEESCG---------------GSTSSS-EEESSEBTT-------BSSHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhhhhcCceeeEEecCCC---------------CCCCCEeecCCCCCcC-------CCCHHHHHHH
Confidence 344567888999999999999885 4433211 1444555555555432 4678999999
Q ss_pred HHHHHHhcCCCccceEEecc
Q 048467 88 CEARLKRLDVDCIDLYYQHR 107 (198)
Q Consensus 88 ~~~sL~~L~~~~lDl~~lh~ 107 (198)
|++.++...-+||-|+=+..
T Consensus 65 l~~c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 65 LEACLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp HHHHHHHSTTSEEEEEEEET
T ss_pred HHHHHHhCCCceEEEEEEcC
Confidence 99999999989999865543
No 197
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=20.87 E-value=5.2e+02 Score=24.35 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCccc-eEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 77 YCGDPAYVRAACEARLKRLDVDCID-LYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 77 ~~~~~~~i~~~~~~sL~~L~~~~lD-l~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
+........++|.+.|+-||+++=. .++ .+.-++...+++++|+++|++= +|.-+.+++++..
T Consensus 96 p~R~~~e~~d~IleDL~WLGl~wDe~~~~-----QSdr~d~y~e~a~~Li~~G~AY---~c~cs~eei~~~r 159 (601)
T PTZ00402 96 PSKEKEHFEQAILDDLATLGVSWDVGPTY-----SSDYMDLMYEKAEELIKKGLAY---CDKTPREEMQKCR 159 (601)
T ss_pred CcccCHHHHHHHHHHHHHCCCCCCCceee-----ccccHHHHHHHHHHHHHcCCEE---EecCCHHHHHHHH
Confidence 4456778899999999999986422 221 1223567889999999999864 7787888887654
No 198
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.84 E-value=4.4e+02 Score=21.02 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCCcEEEEEeecc
Q 048467 13 KPKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRGRVELATKFGI 68 (198)
Q Consensus 13 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~~~~i~tK~~~ 68 (198)
.+.+++.++.+..++.|++.|...-... ...+.+.+.-++.++--+-.-|++..
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccCH
Confidence 4788999999999999999999874333 34455544433344434556666653
No 199
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.78 E-value=1.5e+02 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCC--eEeCCCCCC
Q 048467 8 SFFHPKPKSDTIALIHHAIDSGIT--ILDTSDAYG 40 (198)
Q Consensus 8 ~~g~~~~~~~~~~~l~~A~~~Gi~--~~DtA~~Yg 40 (198)
.+|. .+..-+.+.+++|...|+. ++|||.--.
T Consensus 201 ~~G~-DpAaVafDAi~~Akar~~DvvliDTAGRLh 234 (340)
T COG0552 201 KEGA-DPAAVAFDAIQAAKARGIDVVLIDTAGRLH 234 (340)
T ss_pred CCCC-CcHHHHHHHHHHHHHcCCCEEEEeCccccc
Confidence 3555 4566788999999998888 789987554
No 200
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.69 E-value=3.3e+02 Score=22.74 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCCccceEEeccCCCCCCh---HHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 84 VRAACEARLKRLDVDCIDLYYQHRIDTKVPI---EVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 84 i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~---~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
.++.+.-.+.-++ ..+++++.-|....+. .+.++.|.++.++|. +.|=+|+|..++++...
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~ 204 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELC 204 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhC
Confidence 4444444444443 3488888888655543 568999999999997 67889999999999975
No 201
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.40 E-value=5.3e+02 Score=21.83 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHHcCCCeEe
Q 048467 12 PKPKSDTIALIHHAIDSGITILD 34 (198)
Q Consensus 12 ~~~~~~~~~~l~~A~~~Gi~~~D 34 (198)
.++.++..++++.+.+.|+..+.
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~ 58 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLH 58 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEE
Confidence 46778888999999899987775
No 202
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.37 E-value=5.6e+02 Score=22.02 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHH-----------------hhhc--cCCcEEEEEeeccccCCCC
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKA-----------------LKAR--YRGRVELATKFGIRYEDGQ 74 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~-----------------l~~~--~R~~~~i~tK~~~~~~~~~ 74 (198)
+.+...++.+++-+.|+.++=|.-.-. +-..+-+. |+.. ....++++|=.
T Consensus 75 ~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~-------- 143 (327)
T TIGR03586 75 PWEWHKELFERAKELGLTIFSSPFDET---AVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-------- 143 (327)
T ss_pred CHHHHHHHHHHHHHhCCcEEEccCCHH---HHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC--------
Confidence 456677899999999999997764221 11111111 1110 12223333322
Q ss_pred cccCCCHHHHHHHHHHHHHhcCCCccceEEeccCCC-CCChHH-HHHHHHHHHHcCcCcEEEecCCCHHH
Q 048467 75 YSYCGDPAYVRAACEARLKRLDVDCIDLYYQHRIDT-KVPIEV-TIGELKKLVEEGKIKYIGLSEASAST 142 (198)
Q Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~-~~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~~~ 142 (198)
.+.+.+..+++...+ -|. -++.++|.... ..+.+. -+.+|..|++.=. .-||+|.|+...
T Consensus 144 ----~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~ 205 (327)
T TIGR03586 144 ----ATLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGI 205 (327)
T ss_pred ----CCHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCch
Confidence 357788888887753 332 47899998643 223332 4667777776443 359999997653
No 203
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=20.27 E-value=87 Score=21.87 Aligned_cols=34 Identities=26% Similarity=0.158 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 114 IEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 114 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
..+.++.+.+|+++|+++-.=-..|+.+++.+++
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~ 113 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAH 113 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHH
Confidence 3567889999999999987766678888888877
No 204
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=20.26 E-value=4.2e+02 Score=22.92 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCC-eEeCCCCCCCCChhHHHHHHhhh-ccCCcEEEEEeeccccCCCCcccCCCHHHHHHHHHHHHH
Q 048467 16 SDTIALIHHAIDSGIT-ILDTSDAYGPHTNEILPGKALKA-RYRGRVELATKFGIRYEDGQYSYCGDPAYVRAACEARLK 93 (198)
Q Consensus 16 ~~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~sE~~~G~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (198)
++..+.|+.|.-.||+ +|| .-| . .++-..+.. ..+-+|.++.-+..-..+. ....+..+-.-+..
T Consensus 206 ~d~~~~L~~a~P~GIDvyfe---NVG---g-~v~DAv~~~ln~~aRi~~CG~IS~YN~~~---~~~gp~~l~~l~~k--- 272 (340)
T COG2130 206 EDFAQALKEACPKGIDVYFE---NVG---G-EVLDAVLPLLNLFARIPVCGAISQYNAPE---LPPGPRRLPLLMAK--- 272 (340)
T ss_pred ccHHHHHHHHCCCCeEEEEE---cCC---c-hHHHHHHHhhccccceeeeeehhhcCCCC---CCCCcchhhHHHhh---
Confidence 3566777788878888 555 333 1 223333333 4567888887776432110 11112222222222
Q ss_pred hcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEE
Q 048467 94 RLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYI 133 (198)
Q Consensus 94 ~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~i 133 (198)
++-+ -=|++ .++...-+.|..+.|..++++|||++-
T Consensus 273 r~~v---~Gfiv-~~~~~~~~~e~~~~l~~wv~~GKi~~~ 308 (340)
T COG2130 273 RLRV---QGFIV-ASDYDQRFPEALRELGGWVKEGKIQYR 308 (340)
T ss_pred hhee---EEEEe-chhhhhhhHHHHHHHHHHHHcCceeeE
Confidence 3322 22333 333444567899999999999999864
No 205
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.15 E-value=3.8e+02 Score=19.99 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHcCCCeEeCCCCCCCCChhHHHHHHhhhccCC-cEEEEEeeccc
Q 048467 14 PKSDTIALIHHAIDSGITILDTSDAYGPHTNEILPGKALKARYRG-RVELATKFGIR 69 (198)
Q Consensus 14 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~G~~l~~~~R~-~~~i~tK~~~~ 69 (198)
+.+...++++.+++.|++-+-+.. .++-.+.+. .++ ++-|..+++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~ 58 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFP 58 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCC
Confidence 678899999999999999876543 223333222 234 56677777643
No 206
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.11 E-value=1.9e+02 Score=22.02 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCc----cceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 84 VRAACEARLKRLDVDC----IDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 84 i~~~~~~sL~~L~~~~----lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
.++.++..++.+|++. ++.+.-. .....+..++.+.|++|+++| ++-.-+||.+...++..+
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l 126 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEA-YLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLV 126 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHH
Confidence 3566677777777641 1111111 112234567888999999988 455557888877776665
No 207
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=20.11 E-value=1.8e+02 Score=26.25 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCccceEEeccCCCCCChHHHHHHHHHHHHcCcCcEEEecCCCHHHHHHHc
Q 048467 78 CGDPAYVRAACEARLKRLDVDCIDLYYQHRIDTKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAR 147 (198)
Q Consensus 78 ~~~~~~i~~~~~~sL~~L~~~~lDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~~~~~~ 147 (198)
..+.+...+.+.+.|+.||++ .|-++. .+.-.+..-+.+++|+++|++- -|-.+.+++++..
T Consensus 47 ~Rs~~~~~~~I~e~L~wLGI~-~De~y~----QSer~~~y~~~~e~L~e~G~AY---~C~Ct~eel~~~r 108 (445)
T PRK12558 47 ERSKQEYADAIAEDLKWLGIN-WDRTFR----QSDRFDRYDEAAEKLKAAGRLY---PCYETPEELELKR 108 (445)
T ss_pred ccchHHHHHHHHHHHHHcCCC-CCcccc----HHHHHHHHHHHHHHHHHCCCEE---EecCchHHHHHHH
Confidence 456788999999999999997 574321 1222445678899999999862 3444566665433
No 208
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=20.00 E-value=2.9e+02 Score=23.38 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHhcCCC
Q 048467 79 GDPAYVRAACEARLKRLDVD 98 (198)
Q Consensus 79 ~~~~~i~~~~~~sL~~L~~~ 98 (198)
.+++.+.+.|++..+.+|++
T Consensus 286 GtPe~V~e~i~~~~~~~G~d 305 (337)
T TIGR03858 286 GSPETVAEKIADTIETLGLD 305 (337)
T ss_pred eCHHHHHHHHHHHHHHcCCC
Confidence 35666666666655555544
Done!