BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>048469
MVIGIVSMADLSFTEALKSPIALGGPWEVYGSAWCPKQSWFPSSAVDHYITFDATNSGNT
TEKLSLLFNEITHVHDPAHSAHANSHDPPLREDLSRLPCQNFYCALEDLVASYMPVISYS
IHRSSIIIGSSSRSVYNSLLTLDVICKVFGVEFVPFDENDDFDFVGMMKPKAKVWDEIAE
QHGLYNINKLEEITCFEALINVLHFGFQHVCSMNKSREFGFFKFADTLKSLGMWVTKLR

High Scoring Gene Products

Symbol, full name Information P value
VEP1
AT4G24220 		protein from Arabidopsis thaliana 1.1e-21

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048469
        (239 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2135932 - symbol:VEP1 "VEIN PATTERNING 1" spec...   137  1.1e-21   3


>TAIR|locus:2135932 [details] [associations]
            symbol:VEP1 "VEIN PATTERNING 1" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0009611 "response to wounding" evidence=IEP] [GO:0010051 "xylem
            and phloem pattern formation" evidence=IMP] [GO:0008202 "steroid
            metabolic process" evidence=IDA] [GO:0035671 "enone reductase
            activity" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR016040 GO:GO:0005829 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009611 GO:GO:0000166
            Gene3D:3.40.50.720 GO:GO:0008202 GO:GO:0010051 EMBL:AL161561
            GO:GO:0047787 EMBL:AL078637 UniGene:At.71005 GO:GO:0035671
            EMBL:X99793 EMBL:EF579963 EMBL:AY062451 EMBL:BT008479 EMBL:AY087323
            IPI:IPI00524911 IPI:IPI00540048 IPI:IPI00846354 PIR:T09885
            RefSeq:NP_001078438.1 RefSeq:NP_194153.1 UniGene:At.32364
            ProteinModelPortal:Q9STX2 SMR:Q9STX2 PRIDE:Q9STX2
            EnsemblPlants:AT4G24220.1 GeneID:828523 KEGG:ath:AT4G24220
            TAIR:At4g24220 eggNOG:NOG46937 HOGENOM:HOG000216741
            InParanoid:Q9STX2 OMA:GLKHYLG PhylomeDB:Q9STX2
            ProtClustDB:CLSN2685402 BioCyc:ARA:AT4G24220-MONOMER
            BioCyc:MetaCyc:AT4G24220-MONOMER Genevestigator:Q9STX2
            Uniprot:Q9STX2
        Length = 388

 Score = 137 (53.3 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
 Identities = 32/97 (32%), Positives = 56/97 (57%)

Query:   144 VICKVFGVEFVPFDENDDFDFVGMMKPKAKVWDEIAEQHGLYNINKLEEITCFEALINVL 203
             ++ + FG+E   F+E  +   V MMK K +VW+E+ +++ L    KLEE+  +    +V+
Sbjct:   289 ILAEQFGIEEYGFEEGKNLGLVEMMKGKERVWEEMVKENQLQE-KKLEEVGVWW-FADVI 346

Query:   204 HFGFQHVC-SMNKSREFGFFKFADTLKSLGMWVTKLR 239
               G + +  SMNKS+E+GF  F ++  S   W+ K +
Sbjct:   347 -LGVEGMIDSMNKSKEYGFLGFRNSNNSFISWIDKYK 382

 Score = 122 (48.0 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:     1 MVIGIVSMADLSFTEALKSPIALGGPWEVYGSAWCPKQSWFPSSAVDHYITFDATNSGNT 60
             ++IG+  +   S  E L      GGPW+VYG A  P+ +W     +D YI  D +++ +T
Sbjct:    30 LIIGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPTWNADHPID-YIQCDVSDAEDT 88

Query:    61 TEKLSLLFNEITHV 74
               KLS L  ++THV
Sbjct:    89 RSKLSPL-TDVTHV 101

 Score = 83 (34.3 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query:    73 HVHDPAHSAHANSHDPPLREDLSRLPCQNFYCALEDLV 110
             H   P  +     HDPP  ED+ RL  QNFY   ED++
Sbjct:   148 HYLGPFTNVDGPRHDPPFTEDMPRLQIQNFYYTQEDIL 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      239       221   0.00095  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  209 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.06u 0.10s 19.16t   Elapsed:  00:00:01
  Total cpu time:  19.06u 0.10s 19.16t   Elapsed:  00:00:01
  Start:  Sat May 11 04:23:10 2013   End:  Sat May 11 04:23:11 2013

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