BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048469
         (239 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
           Lanata
 pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
           Lanata In Complex With Nadp
          Length = 364

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 144 VICKVFGVEFVPFDENDDFDFVGMMKPKAKVWDEIAEQHGLYNINKLEEITCFEALINVL 203
           V+ + FGVE   ++E  D     +MK K  VW+EI  ++GL    KL+++  +    +V+
Sbjct: 265 VLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIVRENGL-TPTKLKDVGIW-WFGDVI 322

Query: 204 HFGFQHVCSMNKSREFGFFKFADTLKSLGMWVTKLR 239
                 + SMNKS+E GF  F ++  +   W+ K +
Sbjct: 323 LGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAK 358



 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 51/159 (32%)

Query: 1   MVIGIVSMADLSFTEALKSPIALGGPWEVYGSAWCPKQSWFPSSAVDHYITFDATNSGNT 60
           +++G+  +   S  E L      GGPW+VYG A   + +W   + ++ Y+  D ++  ++
Sbjct: 5   LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPIN-YVQCDISDPDDS 63

Query: 61  TEKLSLLFNEITHV--------HDPAHSAHANS--------------------------- 85
             KLS L  ++THV             +  ANS                           
Sbjct: 64  QAKLSPL-TDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRK 122

Query: 86  --------------HDPPLREDLSRLPCQNFYCALEDLV 110
                         HDPP  EDL RL   NFY  LED++
Sbjct: 123 HYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIM 161


>pdb|1R8L|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
           Licheniformis
 pdb|1R8L|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
           Licheniformis
 pdb|1UR0|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
           Licheniformis In Complex With Two Oligosaccharide
           Products.
 pdb|1UR0|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
           Licheniformis In Complex With Two Oligosaccharide
           Products.
 pdb|1UR4|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
           Licheniformis In Complex With Two Oligosaccharide
           Products.
 pdb|1UR4|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
           Licheniformis In Complex With Two Oligosaccharide
           Products.
 pdb|2CCR|A Chain A, Structure Of Beta-1,4-Galactanase
 pdb|2CCR|B Chain B, Structure Of Beta-1,4-Galactanase
 pdb|2J74|A Chain A, Structure Of Beta-1,4-Galactanase
 pdb|2J74|B Chain B, Structure Of Beta-1,4-Galactanase
          Length = 399

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 10/37 (27%)

Query: 27  WEVYGSAWC--------PKQS--WFPSSAVDHYITFD 53
           WE YGS W         P+ +  WF  SAVD+   FD
Sbjct: 340 WETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFD 376


>pdb|2GFT|A Chain A, Crystal Structure Of The E263a Nucleophile Mutant Of
           Bacillus Licheniformis Endo-beta-1,4-galactanase In
           Complex With Galactotriose
 pdb|2GFT|B Chain B, Crystal Structure Of The E263a Nucleophile Mutant Of
           Bacillus Licheniformis Endo-beta-1,4-galactanase In
           Complex With Galactotriose
          Length = 399

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 10/37 (27%)

Query: 27  WEVYGSAWC--------PKQS--WFPSSAVDHYITFD 53
           WE YGS W         P+ +  WF  SAVD+   FD
Sbjct: 340 WETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFD 376


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,022,217
Number of Sequences: 62578
Number of extensions: 271238
Number of successful extensions: 423
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 5
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)