BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048471
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/183 (59%), Positives = 124/183 (67%), Gaps = 1/183 (0%)
Query: 1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
TLY HS RQFYR+ + GTVDFIFGNAAVV Q C + R P Q +TAQ RTDPNQ
Sbjct: 133 TLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQA 192
Query: 61 TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
TGTSI C I AS+DL + TYLGRPWKEYSRTV M+S++ LINPAGW EW GDF
Sbjct: 193 TGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDF 252
Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVI-NATDAANFTVSNFLLGDNWLPQTAVPYT 179
AL TLYY E+ N GPG+ T+ RV WPGY VI + A FTV+ + G +WL T V Y
Sbjct: 253 ALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYV 312
Query: 180 GGL 182
GL
Sbjct: 313 DGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 216 bits (551), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/183 (57%), Positives = 131/183 (71%), Gaps = 1/183 (0%)
Query: 1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQN 60
+LY HS RQF+ C I GTVDFIFGNAAVVLQ+C+I+ R P +GQ +TAQ RTDPNQN
Sbjct: 137 SLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQN 196
Query: 61 TGTSIHNCTITASADLASSNQTVQTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDF 120
TG I I A++DL + TYLGRPWKEYSRTV MQS + ++INPAGW W G+F
Sbjct: 197 TGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNF 256
Query: 121 ALATLYYAEYNNTGPGSDTTNRVTWPGYQVI-NATDAANFTVSNFLLGDNWLPQTAVPYT 179
AL TLYY EY NTG G+ T+ RVTW G++VI ++T+A FT +F+ G +WL T P++
Sbjct: 257 ALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFS 316
Query: 180 GGL 182
GL
Sbjct: 317 LGL 319
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLN---GQFIAITAQSRTDP 57
TLY R F+ +C I GTVDFIFG+ + NC++ R + G T+
Sbjct: 155 TLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNI 214
Query: 58 NQNTGTSIHNCTITASADLASSNQTVQTY-LGRPW--------------KEYSRTVYMQS 102
NQ G I N + +D + ++Y LGRPW +TV++ +
Sbjct: 215 NQKYGLVITNSRVIRESDSVPA----KSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNT 270
Query: 103 FMDSLINPAGWHEWSGD--------FALATLYYAEYNNTGPGSDTTNRVTWPGYQVINAT 154
MD+ I GW + SG F + EY + G G+ V+ Q+ +A
Sbjct: 271 SMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGA----AVSKDRRQLTDA- 323
Query: 155 DAANFTVSNFLLGDNWLP 172
AA +T S +LGD W P
Sbjct: 324 QAAEYTQSK-VLGD-WTP 339
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLN---GQFIAITAQSRTDP 57
TLY R F+ +C I GTVDFIFG+ + NC++ R + G T+
Sbjct: 155 TLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNI 214
Query: 58 NQNTGTSIHNCTITASADLASSNQTVQTY-LGRPW--------------KEYSRTVYMQS 102
NQ G I N + +D + ++Y LGRPW +TV++ +
Sbjct: 215 NQKYGLVITNSRVIRESDSVPA----KSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNT 270
Query: 103 FMDSLINPAGWHEWSGD--------FALATLYYAEYNNTGPGSDTTNRVTWPGYQVINAT 154
MD+ I GW + SG F + EY + G G+ V+ Q+ +A
Sbjct: 271 SMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGA----TVSKDRRQLTDA- 323
Query: 155 DAANFTVSNFLLGDNWLP 172
AA +T S +LGD W P
Sbjct: 324 QAAEYTQSK-VLGD-WTP 339
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 1 TLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLN---GQFIAITAQSRTDP 57
TLY R F+ +C I GTVDFIFG+ + NC++ R + G T+
Sbjct: 155 TLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNI 214
Query: 58 NQNTGTSIHNCTITASADLASSNQTVQTY-LGRPW--------------KEYSRTVYMQS 102
NQ G I N + +D + ++Y LGRPW +TV++ +
Sbjct: 215 NQKYGLVITNSRVIRESDSVPA----KSYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNT 270
Query: 103 FMDSLINPAGWHEWSGD--------FALATLYYAEYNNTGPGSDTTNRVTWPGYQVINAT 154
MD+ I GW + SG F + EY + G G+ V+ Q+ +A
Sbjct: 271 SMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGA----TVSKDRRQLTDA- 323
Query: 155 DAANFTVSNFLLGDNWLP 172
AA +T S +LGD W P
Sbjct: 324 QAAEYTQSK-VLGD-WTP 339
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 1 TLYTHS-LRQFYRECDIYGTVDFIFGNAAVVLQNCNIYP--RLPLNGQFIAITAQSRTDP 57
TLY+ + R ++ +C+I G VDFIFG+ V NCNI R + + ITA S T
Sbjct: 181 TLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVARDRSDIEPPYGYITAPS-TLT 239
Query: 58 NQNTGTSIHNCTITASADLASSNQTVQTYLGRPWK--------------EYSRTVYMQSF 103
G N +T + +++ LGRPW ++V++ +
Sbjct: 240 TSPYGLIFINSRLTKEPGVPANSFA----LGRPWHPTTTFADGRYADPAAIGQSVFINTT 295
Query: 104 MDSLINPAGWHEWSGD--------FALATLYYAEYNNTGPGS 137
MD I GW + SG F + E N+ GPG+
Sbjct: 296 MDDHI--YGWDKMSGKDKQGEKIWFYPQDSRFFEANSQGPGA 335
>pdb|3V0A|B Chain B, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|B Chain B, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1196
Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 4 THSLRQFYRECDI-YGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTG 62
T++LR E I VD NAA+ + NIYP+ FI+ Q + N T
Sbjct: 730 TNTLRDISNESQIAMNNVDSFLNNAAICVFESNIYPK------FISFMEQCINNINIKTK 783
Query: 63 TSIHNCT-ITASADLASSNQTV 83
I CT I L NQ V
Sbjct: 784 EFIQKCTNINEDEKLQLINQNV 805
>pdb|3FM2|A Chain A, Crystal Structure Of A Putative Heme-binding Protein
(ava_4353) From Anabaena Variabilis Atcc 29413 At 1.80
A Resolution
pdb|3FM2|B Chain B, Crystal Structure Of A Putative Heme-binding Protein
(ava_4353) From Anabaena Variabilis Atcc 29413 At 1.80
A Resolution
Length = 135
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 4 THSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFIAITAQSRTDPNQNTGT 63
+HSL+ F C+ GT+ I ++A VL+ R + F A A+ + G
Sbjct: 3 SHSLKDFLEACETLGTLRLIVTSSAAVLE-----ARGKIEKLFYAELAKGKYANXHTEGF 57
Query: 64 SIH 66
H
Sbjct: 58 EFH 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,948,520
Number of Sequences: 62578
Number of extensions: 242787
Number of successful extensions: 466
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 17
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)