BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048472
         (163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
          Length = 101

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 76  TWCIAKPSTGDERLNANIQFCCQQPDIDCSIIQPGGRSYNPNNYYSHASVVMHLYYKANY 135
           +WC+ KP   D++L  NI + C Q  IDC  IQPGG  + PN   +HA+ VM+LYY+   
Sbjct: 12  SWCVPKPGVSDDQLTGNINYACSQ-GIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70

Query: 136 KLPHTCDFMQSGLIISQDPSVGECIY 161
           +    CDF Q+  + + +PS G C +
Sbjct: 71  RNSWNCDFSQTATLTNTNPSYGACNF 96


>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
           Galactokinase In Complex With Galactose And Mg:amppnp
 pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
           Galactokinase In Complex With Galactose And Mg:amppnp
          Length = 548

 Score = 27.3 bits (59), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 104 CSI-IQPGGRSYNPN-NYYSHASVVMHLYYKANYKLPHTCDFMQSGLIISQDPSVGECIY 161
           C++ + PGG    PN N       + + +YK  Y  P   D      II   P++G C+Y
Sbjct: 493 CTVHLVPGG----PNGNIEKVKEALANEFYKVKY--PKITDAELENAIIVSKPALGSCLY 546

Query: 162 E 162
           E
Sbjct: 547 E 547


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,774,796
Number of Sequences: 62578
Number of extensions: 191307
Number of successful extensions: 343
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 10
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)