Query 048472
Match_columns 163
No_of_seqs 211 out of 735
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 1.2E-33 2.5E-38 202.3 8.9 85 76-161 1-85 (85)
2 PF07983 X8: X8 domain; Inter 99.9 5.3E-26 1.2E-30 160.6 7.0 73 76-148 1-78 (78)
3 PF13956 Ibs_toxin: Toxin Ibs, 66.1 3.2 7E-05 21.7 0.8 16 1-16 1-16 (19)
4 PF06842 DUF1242: Protein of u 47.9 8.3 0.00018 23.5 0.6 24 18-41 10-35 (36)
5 PF07172 GRP: Glycine rich pro 38.9 25 0.00054 25.6 2.0 19 3-21 4-22 (95)
6 PF09628 YvfG: YvfG protein; 23.4 51 0.0011 22.5 1.3 9 125-133 27-35 (68)
7 PF07804 HipA_C: HipA-like C-t 19.7 45 0.00096 22.6 0.5 18 26-43 51-68 (79)
8 TIGR02804 ExbD_2 TonB system t 19.5 74 0.0016 23.3 1.7 12 8-20 12-23 (121)
9 PF05479 PsaN: Photosystem I r 19.1 81 0.0018 24.6 1.9 33 29-65 80-114 (138)
10 PRK11024 colicin uptake protei 19.1 75 0.0016 24.0 1.7 11 9-19 23-33 (141)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=100.00 E-value=1.2e-33 Score=202.31 Aligned_cols=85 Identities=39% Similarity=0.849 Sum_probs=82.5
Q ss_pred eeEEecCCCChHHHHHHHHHhhcCCCCCccccCCCCCCCCCCChhhhhhHHHHHHHHHhCCCCCCCCCCCceEEEecCCC
Q 048472 76 TWCIAKPSTGDERLNANIQFCCQQPDIDCSIIQPGGRSYNPNNYYSHASVVMHLYYKANYKLPHTCDFMQSGLIISQDPS 155 (163)
Q Consensus 76 ~wCV~~~~~~~~~l~~~l~yaC~~~~~dCt~I~~ggsC~~~~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~it~~dpS 155 (163)
+|||+++++++++|+++|+|||+++ +||++|++||+||+|+++++|||||||+|||.+++..++|||+|.|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999995 599999999999999999999999999999999999999999999999999999
Q ss_pred CCceee
Q 048472 156 VGECIY 161 (163)
Q Consensus 156 ~~~C~f 161 (163)
.++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999987
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.93 E-value=5.3e-26 Score=160.56 Aligned_cols=73 Identities=33% Similarity=0.705 Sum_probs=61.7
Q ss_pred eeEEecCCCChHHHHHHHHHhhcCCCCCccccCCCCC-----CCCCCChhhhhhHHHHHHHHHhCCCCCCCCCCCceE
Q 048472 76 TWCIAKPSTGDERLNANIQFCCQQPDIDCSIIQPGGR-----SYNPNNYYSHASVVMHLYYKANYKLPHTCDFMQSGL 148 (163)
Q Consensus 76 ~wCV~~~~~~~~~l~~~l~yaC~~~~~dCt~I~~ggs-----C~~~~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~ 148 (163)
+|||++|++++++|+++|+|||++.++||++|++||+ .|++|+.++|||||||+|||.+++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999996569999999999 477777899999999999999999999999999996
No 3
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=66.10 E-value=3.2 Score=21.74 Aligned_cols=16 Identities=50% Similarity=0.683 Sum_probs=10.5
Q ss_pred CcchhhHHHHHHHHHH
Q 048472 1 MAKQLSAFVLLLLIIF 16 (163)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (163)
|-|..-..+.||||+|
T Consensus 1 MMk~vIIlvvLLliSf 16 (19)
T PF13956_consen 1 MMKLVIILVVLLLISF 16 (19)
T ss_pred CceehHHHHHHHhccc
Confidence 4566666667777775
No 4
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=47.90 E-value=8.3 Score=23.47 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=17.8
Q ss_pred hhcCcceeccCcccccccc--ccccc
Q 048472 18 LSSTMATVLSLKCFERSEI--TCNIF 41 (163)
Q Consensus 18 ~~~~~~~~~~~g~fersEr--hwGlF 41 (163)
=.-+=.+++.|+-++|+|+ -+|+|
T Consensus 10 CTCtYir~~~P~l~dr~kk~G~~G~f 35 (36)
T PF06842_consen 10 CTCTYIRSIFPSLLDRNKKTGFRGVF 35 (36)
T ss_pred HHhHhHHhHCccccccCCCccccccc
Confidence 4667788999999998543 56766
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.89 E-value=25 Score=25.57 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=8.9
Q ss_pred chhhHHHHHHHHHHHhhcC
Q 048472 3 KQLSAFVLLLLIIFLLSST 21 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (163)
|.|-++.+||.++++++.|
T Consensus 4 K~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSE 22 (95)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444443
No 6
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=23.40 E-value=51 Score=22.51 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 048472 125 VVMHLYYKA 133 (163)
Q Consensus 125 yAfN~YYq~ 133 (163)
-|||+||..
T Consensus 27 ~AmNaYYr~ 35 (68)
T PF09628_consen 27 HAMNAYYRS 35 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999985
No 7
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=19.67 E-value=45 Score=22.58 Aligned_cols=18 Identities=6% Similarity=0.026 Sum_probs=11.7
Q ss_pred ccCccccccccccccccc
Q 048472 26 LSLKCFERSEITCNIFIS 43 (163)
Q Consensus 26 ~~~g~fersErhwGlF~D 43 (163)
+..||-.|+=+|||++.+
T Consensus 51 ~ligN~D~H~kN~s~l~~ 68 (79)
T PF07804_consen 51 YLIGNTDRHLKNFSFLYD 68 (79)
T ss_dssp HHCTBS---CCCSEEEEE
T ss_pred HHHcCCcCCcCCEEEEEc
Confidence 457899998889999944
No 8
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=19.49 E-value=74 Score=23.35 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhc
Q 048472 8 FVLLLLIIFLLSS 20 (163)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (163)
++++|| +||++.
T Consensus 12 VvflLL-iFFmvt 23 (121)
T TIGR02804 12 IMLVLL-AIVLII 23 (121)
T ss_pred HHHHHH-HHHHHH
Confidence 344444 444443
No 9
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=19.14 E-value=81 Score=24.63 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=21.3
Q ss_pred cccccccccccccccCCccccccccc--cccccCCCCCC
Q 048472 29 KCFERSEITCNIFISLQPRYHQQMKA--NWEQATDTPNL 65 (163)
Q Consensus 29 g~fersErhwGlF~Dg~p~Y~i~l~g--~~~~a~~~~~l 65 (163)
-||+| .+-+ ++|+-+||.++.| .+...+.||++
T Consensus 80 aNfaR---~~tv-~fg~c~fP~n~~gc~~la~~~~v~f~ 114 (138)
T PF05479_consen 80 ANFAR---AYTV-QFGTCKFPENFTGCQDLAKQKKVPFL 114 (138)
T ss_dssp SSSTS---GTT---TSTSSSSS-SSSSSSS-STT-TTSS
T ss_pred hhhhh---heee-ecccccCCccchhhHHHHHcCCCcee
Confidence 57888 3322 6899999999988 35556778887
No 10
>PRK11024 colicin uptake protein TolR; Provisional
Probab=19.08 E-value=75 Score=24.01 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=0.0
Q ss_pred HHHHHHHHHhh
Q 048472 9 VLLLLIIFLLS 19 (163)
Q Consensus 9 ~~~~~~~~~~~ 19 (163)
|.++||+||++
T Consensus 23 VvfvLLiFFmv 33 (141)
T PRK11024 23 VLLVLLLIFMA 33 (141)
T ss_pred HHHHHHHHHHh
Done!