Query 048472
Match_columns 163
No_of_seqs 211 out of 735
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jon_A Beta-1,3-glucanase; oli 100.0 1.5E-37 5.3E-42 228.0 10.9 90 73-163 9-98 (101)
2 2w61_A GAS2P, glycolipid-ancho 100.0 2.8E-29 9.5E-34 228.6 4.9 85 75-162 396-492 (555)
3 3ur8_A Glucan endo-1,3-beta-D- 97.9 1.6E-06 5.3E-11 74.4 0.5 35 15-54 281-316 (323)
4 2gsv_A Hypothetical protein YV 23.4 32 0.0011 23.1 1.3 9 125-133 28-36 (80)
5 2v33_A E1 envelope glycoprotei 20.6 18 0.00062 25.3 -0.3 22 142-163 20-41 (91)
6 3akj_A CTKA; protein kinase, t 14.6 59 0.002 26.9 1.4 28 26-53 149-183 (325)
7 2wsc_N PSAN, PSI-N, photosyste 14.0 89 0.003 23.8 2.1 33 29-65 112-146 (170)
8 2lkt_A Retinoic acid receptor 13.6 40 0.0014 23.7 0.0 11 37-47 23-34 (125)
9 3lw5_N Photosystem I-N subunit 12.5 1.6E+02 0.0056 20.0 2.8 35 27-65 25-61 (85)
10 4fsd_A Arsenic methyltransfera 12.0 62 0.0021 26.7 0.7 16 27-46 339-355 (383)
No 1
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Probab=100.00 E-value=1.5e-37 Score=228.01 Aligned_cols=90 Identities=39% Similarity=0.872 Sum_probs=86.9
Q ss_pred CCceeEEecCCCChHHHHHHHHHhhcCCCCCccccCCCCCCCCCCChhhhhhHHHHHHHHHhCCCCCCCCCCCceEEEec
Q 048472 73 GQTTWCIAKPSTGDERLNANIQFCCQQPDIDCSIIQPGGRSYNPNNYYSHASVVMHLYYKANYKLPHTCDFMQSGLIISQ 152 (163)
Q Consensus 73 ~~~~wCV~~~~~~~~~l~~~l~yaC~~~~~dCt~I~~ggsC~~~~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~it~~ 152 (163)
..++|||+|+++++++|+++|+|||+++ +||++|++||+||.|+++++|||||||+|||++++..++|||+|+|+|+++
T Consensus 9 ~~~~wCVak~~~~~~~l~~~ldyACg~g-aDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~~ 87 (101)
T 2jon_A 9 AAGSWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNT 87 (101)
T ss_dssp CCSCEEEECTTSCHHHHHHHHHHHTTTS-SSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEESS
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHcCCC-CCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEeec
Confidence 3789999999999999999999999996 699999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeCC
Q 048472 153 DPSVGECIYEP 163 (163)
Q Consensus 153 dpS~~~C~f~~ 163 (163)
|||.++|+|++
T Consensus 88 dPS~g~C~f~~ 98 (101)
T 2jon_A 88 NPSYGACNFPS 98 (101)
T ss_dssp CCCCSSSCCCC
T ss_pred CCCCCceecCC
Confidence 99999999985
No 2
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*
Probab=99.95 E-value=2.8e-29 Score=228.60 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=81.5
Q ss_pred ceeEEecCC-CChHHHHHHHHHhhcCCCCCccccCCCCC-----CCCCCChhhhhhHHHHHHHHHhCCCCCCCCCCCc--
Q 048472 75 TTWCIAKPS-TGDERLNANIQFCCQQPDIDCSIIQPGGR-----SYNPNNYYSHASVVMHLYYKANYKLPHTCDFMQS-- 146 (163)
Q Consensus 75 ~~wCV~~~~-~~~~~l~~~l~yaC~~~~~dCt~I~~ggs-----C~~~~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~-- 146 (163)
++|||++++ +++++|+++|+|||+++ ||++|++||+ ||+||++++|||||||+|||.+++..++|||+|+
T Consensus 396 ~~~Cv~~~~~~~~~~l~~~~~yaC~~~--dC~~I~~~g~~g~yG~~~~~~~~~~~Sya~n~yyq~~~~~~~~C~F~g~~~ 473 (555)
T 2w61_A 396 ILPCEIVPFGAESGKYEEYFSYLCSKV--DCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLYCKIGANDRHCPLNDKNV 473 (555)
T ss_dssp HCSEEECCTTCCGGGHHHHHHHHTTTS--CGGGGCEETTTTEECTTTTSCHHHHHHHHHHHHHHHHCCCSSCCSCCCTTE
T ss_pred CCeeecCCCCCCHHHHHHHHHHHhCcC--CCccccCCCcCCCccccCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCcc
Confidence 589999999 99999999999999997 9999999999 5999999999999999999999999999999999
Q ss_pred ----eEEEecCCCCCceeeC
Q 048472 147 ----GLIISQDPSVGECIYE 162 (163)
Q Consensus 147 ----A~it~~dpS~~~C~f~ 162 (163)
|+++ ++||.++|+|.
T Consensus 474 ~~~~a~~~-~~~s~~~C~~~ 492 (555)
T 2w61_A 474 YFNLESLQ-PLTSESICKNV 492 (555)
T ss_dssp EECGGGGS-CCCTTCTTHHH
T ss_pred cccceEEE-eCCCCCchHhH
Confidence 9999 88999999984
No 3
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Probab=97.93 E-value=1.6e-06 Score=74.40 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHhhcCcceeccCccccccccccccc-ccCCccccccccc
Q 048472 15 IFLLSSTMATVLSLKCFERSEITCNIF-ISLQPRYHQQMKA 54 (163)
Q Consensus 15 ~~~~~~~~~~~~~~g~fersErhwGlF-~Dg~p~Y~i~l~g 54 (163)
+|.|+||+.|. .+.+|| ||||| +|++|||+++++-
T Consensus 281 ~F~lfde~~K~--g~~~E~---~wGlf~~d~~~ky~~~~~~ 316 (323)
T 3ur8_A 281 LFAMFDENEKK--GEASEK---HFGLFNPDQRPKYQLNFNL 316 (323)
T ss_dssp EECSBCCTTCC--SSGGGG---CCCSBCTTSCBSSCCCCSC
T ss_pred EEEeecCCCCC--CCCcCc---eeeEECCCCCEeeccceec
Confidence 56789999997 456788 99999 9999999999864
No 4
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=23.37 E-value=32 Score=23.08 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=7.6
Q ss_pred HHHHHHHHH
Q 048472 125 VVMHLYYKA 133 (163)
Q Consensus 125 yAfN~YYq~ 133 (163)
-|||+||..
T Consensus 28 hAmNaYYrs 36 (80)
T 2gsv_A 28 HAMNSYYRS 36 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999985
No 5
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=20.65 E-value=18 Score=25.34 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.3
Q ss_pred CCCCceEEEecCCCCCceeeCC
Q 048472 142 DFMQSGLIISQDPSVGECIYEP 163 (163)
Q Consensus 142 dF~G~A~it~~dpS~~~C~f~~ 163 (163)
||+|.|+|+...--.|.|..+|
T Consensus 20 DFGGvatl~Y~a~k~GkCaVHs 41 (91)
T 2v33_A 20 DFGGVLTLTYKTNKNGDCSVHS 41 (91)
T ss_dssp EEEEEEEEEEEESSCEEEEEEC
T ss_pred CCCCeEEEEEecCCCccceeec
Confidence 8999999997766668886543
No 6
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=14.60 E-value=59 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=20.2
Q ss_pred ccCccccccccccccccc---C----Ccccccccc
Q 048472 26 LSLKCFERSEITCNIFIS---L----QPRYHQQMK 53 (163)
Q Consensus 26 ~~~g~fersErhwGlF~D---g----~p~Y~i~l~ 53 (163)
+..||-.||-+|||++++ | .|.||+..+
T Consensus 149 ~LIgN~D~H~kN~s~l~~~~tg~~~LAP~YD~~~s 183 (325)
T 3akj_A 149 TLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSC 183 (325)
T ss_dssp HHHTCSCCCGGGCEEEEESSSSCEEECCBCCCTTS
T ss_pred HhhcCCCCCCcCeEEEEECCCCCEEecCccccccc
Confidence 346888998889999943 4 357888753
No 7
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=14.03 E-value=89 Score=23.78 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=24.2
Q ss_pred cccccccccccccccCCccccccccc--cccccCCCCCC
Q 048472 29 KCFERSEITCNIFISLQPRYHQQMKA--NWEQATDTPNL 65 (163)
Q Consensus 29 g~fersErhwGlF~Dg~p~Y~i~l~g--~~~~a~~~~~l 65 (163)
-||+| .+-+ .||+=+|+-++.| .+...++||++
T Consensus 112 ANfaR---a~TV-~~GtCkFP~Nf~GCqdlAk~k~V~Fl 146 (170)
T 2wsc_N 112 ANFAR---AYTV-EFGSCKFPENFTGCQDLAKQKKVPFL 146 (170)
T ss_dssp SSSCS---CTTC-CCSCSSCCSCCSCSSSCCCTTCTTSS
T ss_pred cchhh---eeee-ecccccCCccccchHHHHhcCCCcee
Confidence 47888 3222 6899999999988 34555778887
No 8
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=13.55 E-value=40 Score=23.72 Aligned_cols=11 Identities=0% Similarity=-0.239 Sum_probs=8.9
Q ss_pred ccccc-ccCCcc
Q 048472 37 TCNIF-ISLQPR 47 (163)
Q Consensus 37 hwGlF-~Dg~p~ 47 (163)
||||| -||+..
T Consensus 23 H~gIYvGdg~Vi 34 (125)
T 2lkt_A 23 HWALYIGDGYVI 34 (125)
T ss_dssp EEEEEEETTEEE
T ss_pred EEEEEeCCCeEE
Confidence 99999 788643
No 9
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=12.46 E-value=1.6e+02 Score=19.96 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=25.3
Q ss_pred cCcccccccccccccccCCccccccccc--cccccCCCCCC
Q 048472 27 SLKCFERSEITCNIFISLQPRYHQQMKA--NWEQATDTPNL 65 (163)
Q Consensus 27 ~~g~fersErhwGlF~Dg~p~Y~i~l~g--~~~~a~~~~~l 65 (163)
.--||+| .+-+ .||+-+||.++.| .+....+||++
T Consensus 25 S~ANfaR---s~TV-~~G~C~FP~Nf~GCq~~a~~~~V~Fl 61 (85)
T 3lw5_N 25 TGANFAR---AYTV-EFGSCKFPENFTGCQDLAKQKKVPFL 61 (85)
T ss_dssp SSSSSTT---TSSC-CCSCSSCCSCCSCSSSCCCTTBTTBS
T ss_pred cccchhh---eeEe-ecccccCCccccchHHHHhcCCCcee
Confidence 3457999 2222 6999999999988 34555778887
No 10
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=12.01 E-value=62 Score=26.67 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=11.6
Q ss_pred cCccccccccccccc-ccCCc
Q 048472 27 SLKCFERSEITCNIF-ISLQP 46 (163)
Q Consensus 27 ~~g~fersErhwGlF-~Dg~p 46 (163)
-.|+| | |+|+| ..+.+
T Consensus 339 ~~~~~-~---~~~~~~~~~~~ 355 (383)
T 4fsd_A 339 VSAEQ-Q---HMGLFKANDSY 355 (383)
T ss_dssp ECCCC-S---CCSBCCCSTTH
T ss_pred EccCc-e---eecccCCCCch
Confidence 46788 8 99999 54443
Done!