BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>048473
LLSPSSSFSFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPFLRGELEAIDKNL
PSLIVVLRSVGAGESTEGAHS

High Scoring Gene Products

Symbol, full name Information P value
AT3G19990 protein from Arabidopsis thaliana 1.5e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048473
        (81 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2095350 - symbol:AT3G19990 "AT3G19990" species...   128  1.5e-07   1


>TAIR|locus:2095350 [details] [associations]
            symbol:AT3G19990 "AT3G19990" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829
            GO:GO:0009570 EMBL:CP002686 EMBL:BT022013 EMBL:BT026484
            IPI:IPI00536271 RefSeq:NP_188633.1 UniGene:At.5941 PRIDE:Q501F4
            EnsemblPlants:AT3G19990.1 GeneID:821537 KEGG:ath:AT3G19990
            OMA:MADFSDQ ProtClustDB:CLSN2684719 Genevestigator:Q501F4
            Uniprot:Q501F4
        Length = 425

 Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query:    39 ETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAGE 74
             + ++ SARPFLRGELE ID  LPSLI VL+SVGAGE
Sbjct:    11 DAVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGE 46


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        69   0.00091  102 3  11 23  0.36    29
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  420 (45 KB)
  Total size of DFA:  73 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.08u 0.28s 8.36t   Elapsed:  00:00:01
  Total cpu time:  8.08u 0.28s 8.36t   Elapsed:  00:00:01
  Start:  Sat May 11 04:26:55 2013   End:  Sat May 11 04:26:56 2013

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