BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048473
         (81 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2LVE4|LPXC_SYNAS UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
           OS=Syntrophus aciditrophicus (strain SB) GN=lpxC PE=3
           SV=1
          Length = 315

 Score = 33.5 bits (75), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 1   LLSPSSSF--SFNIFFDHPLIFNQNSTMPSQLGNINNDYLETLVASARPF 48
           +L+PSSSF  ++ I FDHPLI  Q+  +      ++++  E  + S+R F
Sbjct: 145 MLAPSSSFEITYKIEFDHPLIKEQSYHL-----KLSDETYEKEICSSRTF 189


>sp|Q3ZYV1|DNAK_DEHSC Chaperone protein DnaK OS=Dehalococcoides sp. (strain CBDB1)
           GN=dnaK PE=3 SV=1
          Length = 636

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 21  NQNSTMPSQLGNINNDYLETLVASARPFLRG-ELEAIDKNLPSLIVVLRSVGA---GEST 76
           +    +P++L    N  LE+ +A+ R  L+G ++EAI K    L   L+SVG+   G+  
Sbjct: 552 DNKDKIPAEL----NTELESKIAAVRTALQGNDVEAIKKTTQELSTALQSVGSAVYGKQQ 607

Query: 77  EGA 79
           EGA
Sbjct: 608 EGA 610


>sp|A5FPU4|DNAK_DEHSB Chaperone protein DnaK OS=Dehalococcoides sp. (strain BAV1) GN=dnaK
           PE=3 SV=1
          Length = 636

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 21  NQNSTMPSQLGNINNDYLETLVASARPFLRG-ELEAIDKNLPSLIVVLRSVGA---GEST 76
           +    +P++L    N  LE+ +A+ R  L+G ++EAI K    L   L+SVG+   G+  
Sbjct: 552 DNKDKIPAEL----NTELESKIAAVRTALQGNDVEAIKKTTQELSTALQSVGSAVYGKQQ 607

Query: 77  EGA 79
           EGA
Sbjct: 608 EGA 610


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,025,395
Number of Sequences: 539616
Number of extensions: 980508
Number of successful extensions: 2434
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2432
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)