Query 048473
Match_columns 81
No_of_seqs 23 out of 25
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 17:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghf_A Septum site-determining 64.2 3.2 0.00011 26.9 1.7 37 36-72 32-75 (120)
2 2jd3_A STBB protein; plasmid s 39.9 8.4 0.00029 26.7 0.7 29 40-68 26-65 (130)
3 2z5s_M MDM4 protein, zebrafish 35.8 11 0.00037 26.7 0.8 27 47-74 15-41 (140)
4 3ff5_A PEX14P, peroxisomal bio 33.9 28 0.00095 20.7 2.3 37 36-73 7-43 (54)
5 3fea_A MDM4 protein; HDMX, HDM 32.6 15 0.00052 24.6 1.1 26 48-74 8-33 (100)
6 2kfs_A Conserved hypothetical 28.1 27 0.00093 24.2 1.7 25 48-73 72-96 (148)
7 1z1m_A Ubiquitin-protein ligas 27.5 18 0.00062 24.9 0.8 25 50-74 21-45 (119)
8 3nng_A Uncharacterized protein 26.9 10 0.00034 27.5 -0.7 8 70-77 57-64 (168)
9 1th5_A NIFU1; iron-sulfur clus 26.3 18 0.00063 22.1 0.6 18 35-52 6-23 (74)
10 3gv0_A Transcriptional regulat 25.7 8.6 0.00029 25.1 -1.1 13 68-80 275-287 (288)
11 1vk2_A Uracil-DNA glycosylase 24.9 19 0.00065 24.8 0.5 21 40-60 112-132 (204)
12 2axi_A Ubiquitin-protein ligas 24.3 23 0.0008 24.2 0.8 25 50-74 5-29 (115)
13 2w84_A Peroxisomal membrane pr 23.3 51 0.0018 20.6 2.2 34 38-72 14-47 (70)
14 1xhj_A Nitrogen fixation prote 21.7 25 0.00085 22.2 0.5 18 35-52 9-26 (88)
15 1rf6_A 5-enolpyruvylshikimate- 21.7 45 0.0015 24.8 2.0 26 48-73 402-427 (427)
16 1pa4_A Probable ribosome-bindi 21.5 45 0.0015 21.2 1.7 21 35-55 59-79 (116)
17 1ycq_A MDM2, MDM2; anti-oncoge 20.6 40 0.0014 22.8 1.4 24 51-74 6-29 (107)
No 1
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=64.17 E-value=3.2 Score=26.93 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=29.5
Q ss_pred chHHHHHHhcccchhh-----hhhhcC--cCchHHHHHHHHcCC
Q 048473 36 DYLETLVASARPFLRG-----ELEAID--KNLPSLIVVLRSVGA 72 (81)
Q Consensus 36 ~~l~~lla~aRPFLRg-----dle~iD--p~LPslisVLrS~GA 72 (81)
..|...++.+.-|++| |++.++ ..|..++++||+.|-
T Consensus 32 ~~L~~ki~~aP~FF~~aPVVlDl~~l~~~~dl~~L~~~l~~~gl 75 (120)
T 3ghf_A 32 QALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGL 75 (120)
T ss_dssp HHHHHHHHHSHHHHTTCEEEEEEEECCSSCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhChHhhCCCcEEEEccccCChHHHHHHHHHHHHcCC
Confidence 4578889999999999 566553 478999999999873
No 2
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=39.91 E-value=8.4 Score=26.72 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=19.7
Q ss_pred HHHHhcccchhhh-----------hhhcCcCchHHHHHHH
Q 048473 40 TLVASARPFLRGE-----------LEAIDKNLPSLIVVLR 68 (81)
Q Consensus 40 ~lla~aRPFLRgd-----------le~iDp~LPslisVLr 68 (81)
..|+..-.=.||| |-++||+||.||+.|-
T Consensus 26 ~~lesvp~~~Rgd~~R~allaGlAL~k~DpRLP~LLA~~~ 65 (130)
T 2jd3_A 26 EAIESVPRSERGELFRNAFISGMALHQLDPRLPVLLTAIL 65 (130)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHC
T ss_pred HHHHhCCHHhhhHHHHHHHHHHHHHHhcChhHHHHHHHHh
Confidence 3455554445554 4578999999998763
No 3
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=35.84 E-value=11 Score=26.74 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=19.5
Q ss_pred cchhhhhhhcCcCchHHHHHHHHcCCcc
Q 048473 47 PFLRGELEAIDKNLPSLIVVLRSVGAGE 74 (81)
Q Consensus 47 PFLRgdle~iDp~LPslisVLrS~GAgE 74 (81)
.+..+|-+.|-|+ |.++.+|+++||..
T Consensus 15 ~~~~~e~~~VrPk-~~LLkiLq~aGA~~ 41 (140)
T 2z5s_M 15 RTLPGEGTQVHPR-APLLQILKVAGAQE 41 (140)
T ss_dssp SCC--CCCCBEEC-HHHHHHHHHTTCCC
T ss_pred ccCccccceecCc-HHHHHHHHHhCccc
Confidence 4556677777776 58999999999963
No 4
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=33.89 E-value=28 Score=20.73 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=28.5
Q ss_pred chHHHHHHhcccchhhhhhhcCcCchHHHHHHHHcCCc
Q 048473 36 DYLETLVASARPFLRGELEAIDKNLPSLIVVLRSVGAG 73 (81)
Q Consensus 36 ~~l~~lla~aRPFLRgdle~iDp~LPslisVLrS~GAg 73 (81)
..=+.+++.|+-||.+. .--+..+-.-++-|++-|-.
T Consensus 7 ~~Re~li~~Av~FL~dp-~V~~sp~~~K~~FL~sKGLt 43 (54)
T 3ff5_A 7 EFREPLIATAVKFLQNS-RVRQSPLATRRAFLKKKGLT 43 (54)
T ss_dssp HHHHHHHHHHHHHHHCT-TGGGSCHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHhCCh-hhhcCCHHHHHHHHHHcCCC
Confidence 34578999999999987 22366688889999988853
No 5
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=32.56 E-value=15 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=15.9
Q ss_pred chhhhhhhcCcCchHHHHHHHHcCCcc
Q 048473 48 FLRGELEAIDKNLPSLIVVLRSVGAGE 74 (81)
Q Consensus 48 FLRgdle~iDp~LPslisVLrS~GAgE 74 (81)
+..+....|+|+. .++.+|+++||..
T Consensus 8 ~~~~q~~~Vrpk~-~lL~iLq~aGA~~ 33 (100)
T 3fea_A 8 ISPGQINQVRPKL-PLLKILHAAGAQG 33 (100)
T ss_dssp -------CBEECH-HHHHHHHHTTCCS
T ss_pred cCcccccccCCcH-HHHHHHHHhccCc
Confidence 4556666788875 7999999999963
No 6
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=28.05 E-value=27 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=19.0
Q ss_pred chhhhhhhcCcCchHHHHHHHHcCCc
Q 048473 48 FLRGELEAIDKNLPSLIVVLRSVGAG 73 (81)
Q Consensus 48 FLRgdle~iDp~LPslisVLrS~GAg 73 (81)
||.++ ..|-|.||.++.||+..|-.
T Consensus 72 f~~~~-g~vv~~L~G~l~vL~D~G~~ 96 (148)
T 2kfs_A 72 FFTNS-GQVVKSLPGLLTILHDGGYR 96 (148)
T ss_dssp GBCTT-SCBCTTHHHHHHHHHHTTCC
T ss_pred HhccC-CCccCCCccHHHHHhcCCCC
Confidence 45432 45788999999999998854
No 7
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=27.53 E-value=18 Score=24.88 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=19.0
Q ss_pred hhhhhhcCcCchHHHHHHHHcCCcc
Q 048473 50 RGELEAIDKNLPSLIVVLRSVGAGE 74 (81)
Q Consensus 50 Rgdle~iDp~LPslisVLrS~GAgE 74 (81)
.+|.|..+..=|.++.+|+++||..
T Consensus 21 asEqe~~VrPk~~LLkiLq~aGA~~ 45 (119)
T 1z1m_A 21 ASEQETLVRPKPLLLKLLKSVGAQK 45 (119)
T ss_dssp SSSSCCCCCCSTTSHHHHHHHTCCC
T ss_pred chhccccccccHHHHHHHHHhcccc
Confidence 6777745555568999999999963
No 8
>3nng_A Uncharacterized protein; F5_F8_TYPE_C domain, NESG, structural genomics, PSI-2, prote structure initiative; 2.18A {Bacteroides fragilis}
Probab=26.88 E-value=10 Score=27.49 Aligned_cols=8 Identities=38% Similarity=0.227 Sum_probs=6.3
Q ss_pred cCCccccc
Q 048473 70 VGAGESTE 77 (81)
Q Consensus 70 ~GAgECwH 77 (81)
+.|||||-
T Consensus 57 ~nagecww 64 (168)
T 3nng_A 57 ANAGECWW 64 (168)
T ss_dssp HHHSCCEE
T ss_pred ccccceeh
Confidence 46899994
No 9
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=26.27 E-value=18 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=14.5
Q ss_pred CchHHHHHHhcccchhhh
Q 048473 35 NDYLETLVASARPFLRGE 52 (81)
Q Consensus 35 ~~~l~~lla~aRPFLRgd 52 (81)
...++.+|+..||+|+.|
T Consensus 6 ~~~V~~~L~~iRP~L~~d 23 (74)
T 1th5_A 6 EENVEKVLNEIRPYLAGT 23 (74)
T ss_dssp HHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHhHHHHhc
Confidence 356788999999999943
No 10
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.72 E-value=8.6 Score=25.12 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=0.6
Q ss_pred HHcCCcccccccC
Q 048473 68 RSVGAGESTEGAH 80 (81)
Q Consensus 68 rS~GAgECwHKhg 80 (81)
++--|||-||.||
T Consensus 275 s~~~~~~~~~~~~ 287 (288)
T 3gv0_A 275 SSMAPKEGHHHHH 287 (288)
T ss_dssp C------------
T ss_pred cccCCcccccccC
Confidence 5667999999987
No 11
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=24.87 E-value=19 Score=24.76 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.9
Q ss_pred HHHHhcccchhhhhhhcCcCc
Q 048473 40 TLVASARPFLRGELEAIDKNL 60 (81)
Q Consensus 40 ~lla~aRPFLRgdle~iDp~L 60 (81)
.-++.++|||..+++.|.|++
T Consensus 112 ~Ei~~C~~~L~~ei~~~~P~v 132 (204)
T 1vk2_A 112 EEQAACGHFLLAQIEIINPDV 132 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHHHhCCccE
Confidence 347889999999999999864
No 12
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=24.27 E-value=23 Score=24.24 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=16.8
Q ss_pred hhhhhhcCcCchHHHHHHHHcCCcc
Q 048473 50 RGELEAIDKNLPSLIVVLRSVGAGE 74 (81)
Q Consensus 50 Rgdle~iDp~LPslisVLrS~GAgE 74 (81)
.+|.|..+..=|.++++|+++||..
T Consensus 5 ~sEqe~~VrPk~~LLklLq~~GA~~ 29 (115)
T 2axi_A 5 ASEQETLVRPKPLLLKLLKSVGAQK 29 (115)
T ss_dssp --CCCCEEEECHHHHHHHHHTTCCC
T ss_pred hhhcccccCccHHHHHHHHHhcccc
Confidence 4555634444578999999999963
No 13
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=23.27 E-value=51 Score=20.61 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHHHHhcccchhhhhhhcCcCchHHHHHHHHcCC
Q 048473 38 LETLVASARPFLRGELEAIDKNLPSLIVVLRSVGA 72 (81)
Q Consensus 38 l~~lla~aRPFLRgdle~iDp~LPslisVLrS~GA 72 (81)
=+++++.|+-||.+.-- -+..+-.-++-|++-|-
T Consensus 14 Re~li~~Av~FLqdp~V-~~sp~~~K~~FL~sKGL 47 (70)
T 2w84_A 14 REPLIATAVKFLQNSRV-RQSPLATRRAFLKKKGL 47 (70)
T ss_dssp CHHHHHHHHHHHCSTTG-GGSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhCChhh-hhCCHHHHHHHHHHcCC
Confidence 46899999999998622 25668888888888774
No 14
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=21.74 E-value=25 Score=22.19 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=14.4
Q ss_pred CchHHHHHHhcccchhhh
Q 048473 35 NDYLETLVASARPFLRGE 52 (81)
Q Consensus 35 ~~~l~~lla~aRPFLRgd 52 (81)
...++.+|+..||+|+.|
T Consensus 9 ~~~I~~~L~~IRP~L~~d 26 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLRD 26 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHhc
Confidence 456788899999999843
No 15
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=21.72 E-value=45 Score=24.75 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.5
Q ss_pred chhhhhhhcCcCchHHHHHHHHcCCc
Q 048473 48 FLRGELEAIDKNLPSLIVVLRSVGAG 73 (81)
Q Consensus 48 FLRgdle~iDp~LPslisVLrS~GAg 73 (81)
.--.+.+.||...|.+.+.|++.|||
T Consensus 402 ~~I~~~~~v~~syp~f~~~l~~lg~~ 427 (427)
T 1rf6_A 402 VELDRAEAINTSYPSFFDDLESLIHG 427 (427)
T ss_dssp EEEETGGGGGGTCTTHHHHHHHHSCC
T ss_pred EEEcccCcccCcchhHHHHHHHhhCC
Confidence 45556788999999999999999997
No 16
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=21.47 E-value=45 Score=21.18 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=17.8
Q ss_pred CchHHHHHHhcccchhhhhhh
Q 048473 35 NDYLETLVASARPFLRGELEA 55 (81)
Q Consensus 35 ~~~l~~lla~aRPFLRgdle~ 55 (81)
.....+.|..|.+|||.++.+
T Consensus 59 ~~~~~~~L~~a~g~iR~~l~~ 79 (116)
T 1pa4_A 59 IDRVVGAFNQAKGVFSRVLAH 79 (116)
T ss_dssp HHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHh
Confidence 466777899999999999874
No 17
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=20.62 E-value=40 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=15.3
Q ss_pred hhhhhcCcCchHHHHHHHHcCCcc
Q 048473 51 GELEAIDKNLPSLIVVLRSVGAGE 74 (81)
Q Consensus 51 gdle~iDp~LPslisVLrS~GAgE 74 (81)
+|-|..+-.=|.++++|+++||..
T Consensus 6 ~e~e~~VrPk~~LLklL~~~GA~~ 29 (107)
T 1ycq_A 6 SDQEKLVQPTPLLLSLLKSAGAQK 29 (107)
T ss_dssp ---CCCBEECHHHHHHHHHTTCCC
T ss_pred hhcCcccCccHHHHHHHHHhcccc
Confidence 455533344578999999999963
Done!