Query 048473
Match_columns 81
No_of_seqs 23 out of 25
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 17:06:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048473.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048473hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ibia1 g.39.1.3 (A:117-144) C 74.1 0.45 3.3E-05 24.8 0.7 10 70-79 18-27 (28)
2 d1ueka2 d.58.26.5 (A:149-268) 55.0 2.8 0.00021 24.3 1.7 37 39-75 40-80 (120)
3 d2axia1 a.42.1.1 (A:25-109) MD 40.6 6.4 0.00047 24.3 1.8 14 61-74 8-21 (85)
4 d1vk2a_ c.18.1.2 (A:) Thermoph 40.2 3.1 0.00023 26.2 0.2 22 39-60 99-120 (191)
5 d1xhja_ d.52.8.1 (A:) Nitrogen 37.2 5.1 0.00037 23.8 0.9 17 36-52 10-26 (88)
6 d1ttva_ a.42.1.1 (A:) MDM2 {Af 35.3 8.5 0.00062 24.6 1.8 14 60-73 15-28 (107)
7 d1wmhb_ d.15.2.2 (B:) Partitio 29.8 4.6 0.00034 24.8 -0.2 18 33-50 59-76 (82)
8 d1nmla2 a.3.1.5 (A:167-326) Di 22.5 16 0.0012 22.8 1.4 31 47-77 6-36 (160)
9 d1eb7a2 a.3.1.5 (A:165-323) Di 21.5 14 0.001 23.0 1.0 29 48-76 9-37 (159)
10 d2iw0a1 c.6.2.3 (A:29-248) Chi 19.1 24 0.0018 21.8 1.7 13 59-71 188-200 (220)
No 1
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=74.12 E-value=0.45 Score=24.79 Aligned_cols=10 Identities=30% Similarity=0.528 Sum_probs=9.1
Q ss_pred cCCccccccc
Q 048473 70 VGAGESTEGA 79 (81)
Q Consensus 70 ~GAgECwHKh 79 (81)
.|||.-|||.
T Consensus 18 iGaG~~WHk~ 27 (28)
T d1ibia1 18 IGAGKPWHKN 27 (28)
T ss_dssp ESSSSEECSS
T ss_pred hcCCCccccC
Confidence 6999999995
No 2
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=55.05 E-value=2.8 Score=24.35 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHHhcccchhhhhhhc----CcCchHHHHHHHHcCCccc
Q 048473 39 ETLVASARPFLRGELEAI----DKNLPSLIVVLRSVGAGES 75 (81)
Q Consensus 39 ~~lla~aRPFLRgdle~i----Dp~LPslisVLrS~GAgEC 75 (81)
.++....-..+++|+|.+ -|+|-+..+.|++.||-.+
T Consensus 40 ~~~~~~~~~~~~Ndle~~~~~~~p~l~~~~~~l~~~g~~~~ 80 (120)
T d1ueka2 40 EALARGEEPPYWNSLEGPAFRLFPELKEVRGRMRALGLRGV 80 (120)
T ss_dssp HHHHHTCCCSCCBTTHHHHHHHCTHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhcHHHHhCchHHHHHHHHhhHHHHHHHHHHhhhhhe
Confidence 333343445678998854 8899999999999997543
No 3
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.61 E-value=6.4 Score=24.33 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=12.4
Q ss_pred hHHHHHHHHcCCcc
Q 048473 61 PSLIVVLRSVGAGE 74 (81)
Q Consensus 61 PslisVLrS~GAgE 74 (81)
|.++.+|+++||.+
T Consensus 8 p~Ll~~L~~~GA~~ 21 (85)
T d2axia1 8 PLLLKLLKSVGAQK 21 (85)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCc
Confidence 78999999999953
No 4
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=40.16 E-value=3.1 Score=26.16 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.8
Q ss_pred HHHHHhcccchhhhhhhcCcCc
Q 048473 39 ETLVASARPFLRGELEAIDKNL 60 (81)
Q Consensus 39 ~~lla~aRPFLRgdle~iDp~L 60 (81)
+.-++.++|||..+++.|+|++
T Consensus 99 ~~ei~~C~p~L~~ei~~i~Pki 120 (191)
T d1vk2a_ 99 PEEQAACGHFLLAQIEIINPDV 120 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSE
T ss_pred hHHHHHHHHHHHHHHhhhccce
Confidence 4558889999999999999954
No 5
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=37.16 E-value=5.1 Score=23.82 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=13.9
Q ss_pred chHHHHHHhcccchhhh
Q 048473 36 DYLETLVASARPFLRGE 52 (81)
Q Consensus 36 ~~l~~lla~aRPFLRgd 52 (81)
..++.+|+..||+|..|
T Consensus 10 ~~I~~vLe~IRP~l~~d 26 (88)
T d1xhja_ 10 DQVAEVIERLRPFLLRD 26 (88)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHhC
Confidence 45778889999999865
No 6
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=35.30 E-value=8.5 Score=24.61 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=12.5
Q ss_pred chHHHHHHHHcCCc
Q 048473 60 LPSLIVVLRSVGAG 73 (81)
Q Consensus 60 LPslisVLrS~GAg 73 (81)
=|.++.+|+++||.
T Consensus 15 kp~LL~~L~~~GA~ 28 (107)
T d1ttva_ 15 TPLLLSLLKSAGAQ 28 (107)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 48899999999995
No 7
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.82 E-value=4.6 Score=24.79 Aligned_cols=18 Identities=44% Similarity=0.551 Sum_probs=15.8
Q ss_pred CCCchHHHHHHhcccchh
Q 048473 33 INNDYLETLVASARPFLR 50 (81)
Q Consensus 33 ~~~~~l~~lla~aRPFLR 50 (81)
.+|+++...+..|||.||
T Consensus 59 NNDdNf~kA~~sa~PlLR 76 (82)
T d1wmhb_ 59 TNDDSLHRALASGPPPLR 76 (82)
T ss_dssp CSHHHHHHHTTSSSSCEE
T ss_pred cCchHHHHHHHhcCCcee
Confidence 356789999999999998
No 8
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=22.52 E-value=16 Score=22.78 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=22.6
Q ss_pred cchhhhhhhcCcCchHHHHHHHHcCCccccc
Q 048473 47 PFLRGELEAIDKNLPSLIVVLRSVGAGESTE 77 (81)
Q Consensus 47 PFLRgdle~iDp~LPslisVLrS~GAgECwH 77 (81)
.|||||.+.+.+.==.=..+....|...|.-
T Consensus 6 ~~~~g~~~alt~~e~rG~~LF~~~gC~~CH~ 36 (160)
T d1nmla2 6 KYLRGDTSALNESEKEGLALFMDRGCTACHS 36 (160)
T ss_dssp HHHTTCGGGSCHHHHHHHHHHHHTTGGGTSC
T ss_pred HHhcCCcccCCHHHHHHHHHHhccCCCcccc
Confidence 3789998888764445556777888888864
No 9
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.52 E-value=14 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=23.2
Q ss_pred chhhhhhhcCcCchHHHHHHHHcCCcccc
Q 048473 48 FLRGELEAIDKNLPSLIVVLRSVGAGEST 76 (81)
Q Consensus 48 FLRgdle~iDp~LPslisVLrS~GAgECw 76 (81)
|||||-..+++.--.=..+...+|...|.
T Consensus 9 ~~~g~~~alt~~e~rG~~lF~~~gCa~CH 37 (159)
T d1eb7a2 9 YLKGDDKALDAQQKKGLKAFMDSGCSACH 37 (159)
T ss_dssp HHTTCTTSSCHHHHHHHHHHHHTTGGGTS
T ss_pred HHcCCccCCCHHHHHHHHHHHhcCCcccc
Confidence 78999888888666677777788888886
No 10
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Probab=19.07 E-value=24 Score=21.82 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=11.2
Q ss_pred CchHHHHHHHHcC
Q 048473 59 NLPSLIVVLRSVG 71 (81)
Q Consensus 59 ~LPslisVLrS~G 71 (81)
-||.+|..|++.|
T Consensus 188 ~l~~ii~~lk~~G 200 (220)
T d2iw0a1 188 LTQKLIDTLKSKG 200 (220)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 4678999999998
Done!