Query 048474
Match_columns 958
No_of_seqs 290 out of 1293
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 5.8E-71 1.3E-75 642.2 17.8 790 26-956 327-1128(1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 4.4E-17 9.6E-22 141.2 8.9 74 24-97 1-74 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 2E-16 4.4E-21 137.2 8.8 73 24-98 1-73 (74)
4 PTZ00044 ubiquitin; Provisiona 99.7 2.8E-16 6.1E-21 135.7 9.1 75 24-98 1-75 (76)
5 cd01806 Nedd8 Nebb8-like ubiq 99.6 8.9E-16 1.9E-20 131.3 9.5 75 24-98 1-75 (76)
6 cd01797 NIRF_N amino-terminal 99.6 7E-16 1.5E-20 136.7 8.7 74 24-97 1-76 (78)
7 cd01802 AN1_N ubiquitin-like d 99.6 1E-15 2.2E-20 142.5 9.9 78 21-98 25-102 (103)
8 cd01803 Ubiquitin Ubiquitin. U 99.6 1.2E-15 2.6E-20 130.5 9.0 75 24-98 1-75 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 99.6 1.2E-15 2.6E-20 132.4 8.5 73 26-98 1-73 (74)
10 cd01805 RAD23_N Ubiquitin-like 99.6 1.8E-15 4E-20 130.7 9.4 74 24-97 1-76 (77)
11 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.7E-15 3.7E-20 133.1 8.8 72 23-94 1-72 (73)
12 cd01809 Scythe_N Ubiquitin-lik 99.6 2.9E-15 6.2E-20 127.0 8.9 72 24-95 1-72 (72)
13 cd01798 parkin_N amino-termina 99.6 2E-15 4.3E-20 129.4 8.0 70 26-95 1-70 (70)
14 cd01804 midnolin_N Ubiquitin-l 99.6 4.6E-15 1E-19 130.9 9.1 76 23-99 1-76 (78)
15 cd01794 DC_UbP_C dendritic cel 99.6 6.5E-15 1.4E-19 128.1 7.7 69 26-94 1-69 (70)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 8.8E-15 1.9E-19 129.1 8.3 73 24-96 3-77 (80)
17 cd01808 hPLIC_N Ubiquitin-like 99.6 1E-14 2.2E-19 125.6 8.3 71 24-95 1-71 (71)
18 cd01790 Herp_N Homocysteine-re 99.6 9.3E-15 2E-19 131.1 8.0 72 23-94 1-78 (79)
19 PF00240 ubiquitin: Ubiquitin 99.5 2.5E-14 5.5E-19 121.0 8.4 68 29-96 1-68 (69)
20 TIGR00601 rad23 UV excision re 99.5 1.6E-13 3.4E-18 152.6 12.5 76 24-99 1-79 (378)
21 cd01796 DDI1_N DNA damage indu 99.5 8.7E-14 1.9E-18 120.7 7.5 68 26-93 1-70 (71)
22 KOG0010 Ubiquitin-like protein 99.5 1.2E-13 2.5E-18 155.8 9.9 80 22-102 14-93 (493)
23 cd01812 BAG1_N Ubiquitin-like 99.5 1.7E-13 3.6E-18 116.4 7.7 70 24-94 1-70 (71)
24 cd01763 Sumo Small ubiquitin-r 99.5 5.3E-13 1.2E-17 120.1 11.1 81 18-98 6-86 (87)
25 cd01800 SF3a120_C Ubiquitin-li 99.4 1.9E-13 4.2E-18 119.6 7.9 69 31-99 5-73 (76)
26 cd01813 UBP_N UBP ubiquitin pr 99.4 3.9E-13 8.4E-18 118.2 7.6 70 24-94 1-73 (74)
27 KOG0005 Ubiquitin-like protein 99.4 1.4E-13 3.1E-18 118.0 4.3 70 24-93 1-70 (70)
28 KOG0004 Ubiquitin/40S ribosoma 99.4 2.1E-13 4.6E-18 135.0 3.8 78 24-101 1-78 (156)
29 KOG0003 Ubiquitin/60s ribosoma 99.4 6.4E-14 1.4E-18 131.7 -0.1 76 24-99 1-76 (128)
30 smart00213 UBQ Ubiquitin homol 99.3 3E-12 6.6E-17 105.1 7.3 64 24-88 1-64 (64)
31 KOG0011 Nucleotide excision re 99.3 1.7E-11 3.7E-16 133.2 9.7 75 24-98 1-77 (340)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 1.9E-11 4.2E-16 109.1 5.2 57 39-95 15-75 (75)
33 cd01799 Hoil1_N Ubiquitin-like 99.2 5.2E-11 1.1E-15 105.4 7.8 65 29-94 8-74 (75)
34 cd01814 NTGP5 Ubiquitin-like N 99.2 6.3E-11 1.4E-15 112.8 7.2 81 22-102 3-97 (113)
35 cd01769 UBL Ubiquitin-like dom 99.2 1.1E-10 2.4E-15 97.0 7.8 68 27-94 1-68 (69)
36 KOG4248 Ubiquitin-like protein 99.1 1.2E-10 2.6E-15 139.7 9.8 121 24-148 3-129 (1143)
37 PF11976 Rad60-SLD: Ubiquitin- 99.1 5.1E-10 1.1E-14 95.9 8.8 71 24-94 1-72 (72)
38 cd01795 USP48_C USP ubiquitin- 98.8 5.3E-09 1.1E-13 98.2 6.9 64 34-97 15-79 (107)
39 KOG0001 Ubiquitin and ubiquiti 98.8 2.2E-08 4.8E-13 81.8 9.5 72 26-97 2-73 (75)
40 cd01789 Alp11_N Ubiquitin-like 98.8 2.1E-08 4.6E-13 90.3 9.7 73 24-96 2-82 (84)
41 PF13881 Rad60-SLD_2: Ubiquiti 98.7 1.4E-07 3.1E-12 89.8 10.4 76 23-98 2-91 (111)
42 PF14560 Ubiquitin_2: Ubiquiti 98.6 1.4E-07 2.9E-12 84.8 8.7 73 24-96 2-84 (87)
43 PLN02560 enoyl-CoA reductase 98.6 1.4E-07 3E-12 103.3 7.9 69 24-92 1-80 (308)
44 cd01811 OASL_repeat1 2'-5' oli 98.5 2.7E-07 5.9E-12 82.8 7.9 74 24-98 1-79 (80)
45 cd01801 Tsc13_N Ubiquitin-like 98.3 9.6E-07 2.1E-11 78.0 6.4 68 25-92 2-74 (77)
46 cd00196 UBQ Ubiquitin-like pro 98.3 2.5E-06 5.4E-11 65.3 7.7 67 28-94 2-68 (69)
47 cd01788 ElonginB Ubiquitin-lik 98.3 1.4E-06 3E-11 83.8 7.1 71 25-96 4-81 (119)
48 KOG1769 Ubiquitin-like protein 97.9 9.2E-05 2E-09 69.9 11.0 78 21-98 18-95 (99)
49 PF11543 UN_NPL4: Nuclear pore 97.9 2.7E-05 5.8E-10 70.5 5.9 71 22-93 3-78 (80)
50 KOG0006 E3 ubiquitin-protein l 97.8 3.4E-05 7.5E-10 84.7 6.4 82 24-105 1-86 (446)
51 KOG3493 Ubiquitin-like protein 97.7 2.1E-05 4.5E-10 69.4 1.8 70 24-93 2-71 (73)
52 KOG1872 Ubiquitin-specific pro 97.5 0.0002 4.3E-09 82.2 8.3 73 23-96 3-76 (473)
53 PF08817 YukD: WXG100 protein 96.9 0.0018 3.9E-08 57.7 5.7 70 23-92 2-78 (79)
54 KOG4583 Membrane-associated ER 96.7 0.00034 7.4E-09 77.6 -0.6 82 20-101 6-93 (391)
55 PF00789 UBX: UBX domain; Int 96.6 0.015 3.1E-07 51.6 9.2 73 21-93 4-81 (82)
56 COG5227 SMT3 Ubiquitin-like pr 96.3 0.0088 1.9E-07 56.3 5.8 74 22-95 23-96 (103)
57 cd01802 AN1_N ubiquitin-like d 96.2 0.00045 9.7E-09 65.1 -2.9 64 81-162 9-73 (103)
58 KOG4495 RNA polymerase II tran 96.2 0.0092 2E-07 56.7 5.5 61 24-85 3-65 (110)
59 PF10302 DUF2407: DUF2407 ubiq 95.9 0.015 3.3E-07 54.8 5.9 57 26-82 3-64 (97)
60 COG5417 Uncharacterized small 95.7 0.044 9.5E-07 50.2 7.6 69 24-92 5-80 (81)
61 KOG0004 Ubiquitin/40S ribosoma 95.5 0.005 1.1E-07 62.5 0.8 35 129-163 12-47 (156)
62 smart00166 UBX Domain present 95.4 0.094 2E-06 46.8 8.5 71 22-92 3-78 (80)
63 PF13019 Telomere_Sde2: Telome 95.3 0.067 1.5E-06 54.9 8.3 85 24-108 1-97 (162)
64 PF11470 TUG-UBL1: GLUT4 regul 95.3 0.052 1.1E-06 48.1 6.5 63 30-92 3-65 (65)
65 cd01767 UBX UBX (ubiquitin reg 95.1 0.14 3E-06 45.4 8.7 69 23-93 2-75 (77)
66 KOG0003 Ubiquitin/60s ribosoma 95.1 0.0049 1.1E-07 59.5 -0.4 35 128-162 11-46 (128)
67 cd01770 p47_UBX p47-like ubiqu 94.5 0.21 4.4E-06 45.4 8.3 69 22-90 3-75 (79)
68 KOG0013 Uncharacterized conser 94.3 0.071 1.5E-06 56.8 5.6 62 32-93 155-216 (231)
69 KOG0005 Ubiquitin-like protein 94.2 0.012 2.6E-07 51.9 -0.3 37 126-162 9-46 (70)
70 cd01774 Faf1_like2_UBX Faf1 ik 94.1 0.32 6.9E-06 44.8 8.8 70 22-92 3-82 (85)
71 KOG3206 Alpha-tubulin folding 94.0 0.13 2.8E-06 54.8 6.8 72 24-95 2-81 (234)
72 cd01772 SAKS1_UBX SAKS1-like U 93.9 0.34 7.4E-06 43.6 8.4 70 22-92 3-77 (79)
73 KOG1639 Steroid reductase requ 93.8 0.094 2E-06 57.1 5.4 69 24-92 1-76 (297)
74 cd01771 Faf1_UBX Faf1 UBX doma 92.3 0.96 2.1E-05 41.3 8.9 72 21-93 2-78 (80)
75 cd01773 Faf1_like1_UBX Faf1 ik 91.7 1.4 3.1E-05 40.9 9.3 74 21-95 3-81 (82)
76 PF09379 FERM_N: FERM N-termin 91.1 1.1 2.5E-05 39.1 7.8 68 28-95 1-77 (80)
77 cd01793 Fubi Fubi ubiquitin-li 88.6 0.027 5.9E-07 49.3 -4.2 33 130-162 11-44 (74)
78 PF15044 CLU_N: Mitochondrial 88.1 0.74 1.6E-05 41.7 4.4 57 40-96 1-59 (76)
79 PTZ00044 ubiquitin; Provisiona 85.9 0.036 7.8E-07 48.3 -5.1 33 130-162 13-46 (76)
80 cd01794 DC_UbP_C dendritic cel 85.6 0.055 1.2E-06 47.7 -4.0 35 128-162 9-44 (70)
81 smart00295 B41 Band 4.1 homolo 85.3 6.8 0.00015 39.2 10.0 75 22-96 2-84 (207)
82 cd06406 PB1_P67 A PB1 domain i 84.4 3.1 6.7E-05 38.8 6.4 45 23-71 4-48 (80)
83 cd01807 GDX_N ubiquitin-like d 84.4 0.048 1E-06 47.7 -5.0 33 130-162 13-46 (74)
84 PLN02799 Molybdopterin synthas 83.6 4.8 0.0001 36.0 7.2 67 23-94 1-77 (82)
85 cd00754 MoaD Ubiquitin domain 83.3 6.3 0.00014 34.4 7.7 56 35-95 17-76 (80)
86 PRK06437 hypothetical protein; 82.4 6.6 0.00014 34.7 7.5 54 32-94 9-62 (67)
87 smart00666 PB1 PB1 domain. Pho 82.2 5.4 0.00012 35.2 6.9 46 24-70 2-47 (81)
88 cd01810 ISG15_repeat2 ISG15 ub 82.1 0.09 2E-06 46.1 -4.2 34 129-162 10-44 (74)
89 cd01796 DDI1_N DNA damage indu 81.0 0.12 2.6E-06 45.4 -3.8 34 129-162 11-45 (71)
90 PRK08364 sulfur carrier protei 80.3 9.5 0.00021 33.7 7.8 62 23-94 4-65 (70)
91 cd06409 PB1_MUG70 The MUG70 pr 80.3 4.7 0.0001 37.9 6.1 44 25-68 2-48 (86)
92 KOG0012 DNA damage inducible p 79.9 2.3 5E-05 48.8 4.7 65 32-96 11-77 (380)
93 PF14836 Ubiquitin_3: Ubiquiti 79.2 9.5 0.0002 36.2 7.7 64 34-98 14-83 (88)
94 cd06407 PB1_NLP A PB1 domain i 78.4 8.2 0.00018 35.7 7.0 70 24-94 1-80 (82)
95 PF12754 Blt1: Cell-cycle cont 78.4 0.67 1.4E-05 52.0 0.0 66 19-84 74-159 (309)
96 cd01799 Hoil1_N Ubiquitin-like 77.9 0.22 4.7E-06 44.8 -3.2 32 129-161 14-46 (75)
97 PF10209 DUF2340: Uncharacteri 75.9 7.6 0.00017 38.8 6.4 61 35-95 16-108 (122)
98 cd01791 Ubl5 UBL5 ubiquitin-li 73.6 0.29 6.2E-06 43.8 -3.6 33 130-162 14-47 (73)
99 PF00564 PB1: PB1 domain; Int 73.1 12 0.00027 32.9 6.5 47 23-70 1-48 (84)
100 PF11620 GABP-alpha: GA-bindin 72.2 8.7 0.00019 36.4 5.5 61 35-95 4-64 (88)
101 cd01798 parkin_N amino-termina 72.2 0.27 5.7E-06 42.6 -4.0 34 129-162 10-44 (70)
102 PRK06488 sulfur carrier protei 71.5 15 0.00033 31.7 6.5 55 32-94 6-60 (65)
103 TIGR02958 sec_mycoba_snm4 secr 71.0 20 0.00043 42.3 9.4 75 24-99 3-84 (452)
104 cd01800 SF3a120_C Ubiquitin-li 70.7 0.31 6.6E-06 43.2 -4.1 35 128-162 8-43 (76)
105 PF08337 Plexin_cytopl: Plexin 70.4 11 0.00023 45.7 7.1 77 21-97 187-291 (539)
106 PF14453 ThiS-like: ThiS-like 69.0 9.3 0.0002 33.6 4.7 56 24-95 1-56 (57)
107 cd01797 NIRF_N amino-terminal 67.7 0.48 1E-05 42.7 -3.5 31 132-162 16-48 (78)
108 cd06408 PB1_NoxR The PB1 domai 67.0 25 0.00055 33.2 7.4 54 23-80 2-55 (86)
109 TIGR01687 moaD_arch MoaD famil 67.0 32 0.00068 31.1 7.9 57 34-94 16-83 (88)
110 TIGR01682 moaD molybdopterin c 66.8 39 0.00086 30.1 8.4 55 35-94 17-75 (80)
111 cd01768 RA RA (Ras-associating 66.2 45 0.00097 29.9 8.7 64 33-96 12-86 (87)
112 cd01813 UBP_N UBP ubiquitin pr 65.6 0.53 1.2E-05 42.0 -3.6 33 129-161 11-44 (74)
113 smart00455 RBD Raf-like Ras-bi 65.5 17 0.00037 32.6 5.8 49 26-74 2-52 (70)
114 PF00788 RA: Ras association ( 63.8 44 0.00095 29.6 8.1 72 26-97 5-91 (93)
115 PF12436 USP7_ICP0_bdg: ICP0-b 63.1 8.2 0.00018 41.8 4.0 78 19-96 64-153 (249)
116 PF10790 DUF2604: Protein of U 63.1 19 0.00042 32.8 5.6 65 32-96 4-72 (76)
117 cd01760 RBD Ubiquitin-like dom 62.9 19 0.0004 32.8 5.6 45 26-70 2-46 (72)
118 cd05992 PB1 The PB1 domain is 62.8 24 0.00053 30.8 6.2 45 25-70 2-47 (81)
119 PRK06083 sulfur carrier protei 62.6 32 0.00069 32.1 7.1 69 17-95 12-80 (84)
120 smart00144 PI3K_rbd PI3-kinase 62.2 48 0.001 31.8 8.6 75 22-96 16-105 (108)
121 PF00794 PI3K_rbd: PI3-kinase 62.0 50 0.0011 31.1 8.5 75 21-95 14-102 (106)
122 cd01787 GRB7_RA RA (RAS-associ 59.3 44 0.00095 31.7 7.4 58 25-82 4-68 (85)
123 KOG2086 Protein tyrosine phosp 58.3 20 0.00044 41.7 6.1 69 22-90 304-376 (380)
124 cd01795 USP48_C USP ubiquitin- 58.2 1.5 3.3E-05 42.5 -2.2 34 129-162 16-50 (107)
125 cd01806 Nedd8 Nebb8-like ubiq 57.2 0.81 1.8E-05 39.4 -3.9 33 130-162 13-46 (76)
126 PF02597 ThiS: ThiS family; I 56.7 34 0.00074 29.6 6.0 59 35-95 13-73 (77)
127 cd01815 BMSC_UbP_N Ubiquitin-l 56.5 1.2 2.6E-05 40.8 -3.1 27 136-162 19-49 (75)
128 KOG0011 Nucleotide excision re 53.9 58 0.0013 37.6 8.6 58 764-831 216-274 (340)
129 PRK05863 sulfur carrier protei 52.6 40 0.00086 29.4 5.7 56 32-95 6-61 (65)
130 KOG2982 Uncharacterized conser 52.6 17 0.00036 41.8 4.2 56 39-94 353-416 (418)
131 cd06396 PB1_NBR1 The PB1 domai 52.6 42 0.00091 31.5 6.1 35 25-60 2-38 (81)
132 cd01804 midnolin_N Ubiquitin-l 52.3 1 2.3E-05 40.3 -4.1 33 130-162 14-47 (78)
133 cd06398 PB1_Joka2 The PB1 doma 52.3 50 0.0011 31.2 6.7 69 26-95 3-87 (91)
134 PF02196 RBD: Raf-like Ras-bin 51.2 66 0.0014 28.9 7.0 55 26-80 3-59 (71)
135 cd01803 Ubiquitin Ubiquitin. U 51.0 1.3 2.9E-05 38.1 -3.6 33 130-162 13-46 (76)
136 cd01812 BAG1_N Ubiquitin-like 49.4 1.7 3.6E-05 37.2 -3.2 33 130-162 12-45 (71)
137 PF14533 USP7_C2: Ubiquitin-sp 45.8 88 0.0019 33.3 8.2 140 22-164 19-171 (213)
138 KOG0007 Splicing factor 3a, su 45.7 9 0.00019 43.4 0.9 51 30-80 289-340 (341)
139 PRK08053 sulfur carrier protei 45.6 1E+02 0.0022 27.0 7.1 57 32-95 6-62 (66)
140 PF10407 Cytokin_check_N: Cdc1 44.6 68 0.0015 29.6 6.1 61 34-96 3-71 (73)
141 cd01805 RAD23_N Ubiquitin-like 43.8 1.8 3.8E-05 37.8 -3.9 34 129-162 12-48 (77)
142 cd01792 ISG15_repeat1 ISG15 ub 43.3 2.8 6E-05 37.5 -2.9 32 130-161 15-49 (80)
143 KOG2561 Adaptor protein NUB1, 43.2 9 0.0002 45.4 0.4 73 23-95 37-111 (568)
144 TIGR00601 rad23 UV excision re 42.4 2.4 5.2E-05 48.8 -4.3 44 763-811 247-291 (378)
145 cd01809 Scythe_N Ubiquitin-lik 42.2 1.9 4.1E-05 36.7 -3.9 33 130-162 13-46 (72)
146 smart00727 STI1 Heat shock cha 41.7 22 0.00049 28.1 2.3 35 765-807 5-39 (41)
147 cd06410 PB1_UP2 Uncharacterize 41.4 74 0.0016 30.5 6.1 40 28-68 17-56 (97)
148 KOG4250 TANK binding protein k 40.7 56 0.0012 40.9 6.5 42 32-73 323-364 (732)
149 KOG2507 Ubiquitin regulatory p 40.6 1.2E+02 0.0025 36.4 8.6 76 22-97 313-393 (506)
150 cd00565 ThiS ThiaminS ubiquiti 39.2 1E+02 0.0022 26.6 6.2 57 32-95 5-61 (65)
151 cd01808 hPLIC_N Ubiquitin-like 39.2 2.3 4.9E-05 37.0 -4.0 32 131-162 13-45 (71)
152 PRK05659 sulfur carrier protei 38.5 98 0.0021 26.5 6.0 57 32-95 6-62 (66)
153 cd01790 Herp_N Homocysteine-re 38.4 3.7 8.1E-05 37.9 -2.9 33 130-162 16-51 (79)
154 PF14732 UAE_UbL: Ubiquitin/SU 38.2 36 0.00077 31.7 3.4 57 37-93 1-67 (87)
155 PRK07440 hypothetical protein; 36.8 1.8E+02 0.004 26.0 7.5 63 23-95 4-66 (70)
156 cd06411 PB1_p51 The PB1 domain 36.3 70 0.0015 30.0 4.9 37 34-70 7-43 (78)
157 cd01814 NTGP5 Ubiquitin-like N 36.1 4.1 8.9E-05 40.1 -3.1 31 132-162 20-58 (113)
158 PF00240 ubiquitin: Ubiquitin 35.4 1.4 3E-05 37.5 -5.8 34 129-162 7-41 (69)
159 PRK06944 sulfur carrier protei 35.4 1.9E+02 0.004 24.7 7.1 56 32-95 6-61 (65)
160 TIGR01683 thiS thiamine biosyn 34.6 1.2E+02 0.0027 26.1 5.9 57 31-94 3-59 (64)
161 PF14181 YqfQ: YqfQ-like prote 33.9 49 0.0011 34.6 3.9 37 787-852 49-85 (161)
162 smart00213 UBQ Ubiquitin homol 29.6 3.8 8.2E-05 33.6 -4.0 33 130-162 12-45 (64)
163 PRK11130 moaD molybdopterin sy 29.1 4E+02 0.0087 24.0 8.5 51 38-93 19-75 (81)
164 PRK07696 sulfur carrier protei 28.6 2.4E+02 0.0052 25.0 6.8 57 32-95 6-63 (67)
165 PF14847 Ras_bdg_2: Ras-bindin 28.5 1.1E+02 0.0024 29.9 5.1 36 26-61 3-38 (105)
166 KOG3439 Protein conjugation fa 28.3 2.4E+02 0.0052 28.3 7.3 52 22-73 29-84 (116)
167 PF14451 Ub-Mut7C: Mut7-C ubiq 26.1 2.1E+02 0.0045 26.7 6.2 53 33-94 22-75 (81)
168 cd01817 RGS12_RBD Ubiquitin do 25.4 2.3E+02 0.0051 26.4 6.3 47 28-74 4-52 (73)
169 PF11069 DUF2870: Protein of u 24.9 84 0.0018 30.7 3.5 32 65-97 3-34 (98)
170 PF12436 USP7_ICP0_bdg: ICP0-b 24.6 1.6E+02 0.0034 32.2 6.0 45 23-67 176-223 (249)
171 PF12085 DUF3562: Protein of u 24.5 1.3E+02 0.0027 27.7 4.3 45 884-928 3-48 (66)
172 PRK01777 hypothetical protein; 24.5 4.1E+02 0.009 25.5 8.0 66 22-96 2-77 (95)
173 KOG1364 Predicted ubiquitin re 24.4 81 0.0018 36.7 3.9 66 24-89 278-349 (356)
174 KOG3751 Growth factor receptor 23.3 1.6E+02 0.0035 36.1 6.1 76 20-95 185-271 (622)
175 cd01777 SNX27_RA Ubiquitin dom 22.7 1.6E+02 0.0035 28.3 4.8 42 24-65 2-43 (87)
176 PTZ00380 microtubule-associate 22.6 2.4E+02 0.0052 28.4 6.3 74 22-95 26-105 (121)
177 KOG2689 Predicted ubiquitin re 22.3 2.8E+02 0.006 31.7 7.3 71 22-92 209-284 (290)
178 cd06397 PB1_UP1 Uncharacterize 21.2 2.4E+02 0.0052 26.9 5.6 57 25-82 2-63 (82)
179 PF02847 MA3: MA3 domain; Int 20.8 1.2E+02 0.0026 28.1 3.7 63 886-949 17-84 (113)
180 PF08825 E2_bind: E2 binding d 20.7 1.4E+02 0.003 28.0 4.1 55 38-93 1-69 (84)
181 PF07275 ArdA: Antirestriction 20.3 1E+02 0.0022 31.0 3.3 49 886-941 68-128 (169)
182 PF05427 FIBP: Acidic fibrobla 20.1 1.5E+02 0.0033 34.7 5.0 51 886-942 118-176 (361)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-71 Score=642.15 Aligned_cols=790 Identities=21% Similarity=0.161 Sum_probs=623.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCCCcC
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPSSD 105 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~fvK 105 (958)
...+++....+...+.+..++...|.+|...+|||...++|+|-|..++++..+..|+.+.....+..++.+.+....+.
T Consensus 327 dl~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~ 406 (1143)
T KOG4248|consen 327 DLRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVE 406 (1143)
T ss_pred HhhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCC
Confidence 33455666667777777778888899999999999999999999999999999999999999998887777666555433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCchhHHHHHHHHhhccCCCCCCCcCCCCCCCCc
Q 048474 106 ASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQGEGIAPDLTRVIGALINSLGIGGQTPATGSNSGIQFS 185 (958)
Q Consensus 106 tssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq~eGIPPdqQRLIfavL~s~G~~g~~~~~~~~gG~~~~ 185 (958)
++.--.+ +...+....+.+.....+.+.....-++...+-+++...+-.+..+++..+|..|+.++++.+=+....
T Consensus 407 tp~qGat----t~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l 482 (1143)
T KOG4248|consen 407 TPAQGAT----TPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDL 482 (1143)
T ss_pred CcccCCc----CCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcC
Confidence 3221111 111111122223334455555555444433345566677777888899999999998888876555544
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCCcCcCCCCCCCCCCC-CC--CCCCCCcccccCCC-CccCCCCCCCCCCChhhhHHHH
Q 048474 186 TLSNIHAQPQQGNETAGSGGHVGNQSQVGNQAQSGQPY-PG--QLSSPPVVQIPQTA-GAVPFPSLNVPIPDSLNTISEF 261 (958)
Q Consensus 186 ~~s~~~~~~s~G~~t~~~~~n~gg~t~~~~~~qp~q~~-r~--~~~~~~~~q~p~~~-~~~~~~s~~~vIPDSLtTlsqy 261 (958)
.+.+..--+..|.+.+..+ +++.+.++.+-+ +. ..+..+..+.+.+. ..+|+..+...|| -||-.+
T Consensus 483 ~Pthq~~~~pd~P~i~p~s-------sg~e~~s~~q~~~glstd~S~~q~~s~~dt~~~t~Pv~~lr~~vp---~~l~~~ 552 (1143)
T KOG4248|consen 483 APTHQVIARPDGPGIGPFS-------SGGEPNSPTQQGAGLSTDHSLAQMVSGPDTQLTTIPVLVLRGCVP---GMLPPP 552 (1143)
T ss_pred CCcceeecCCCCCCCCCCC-------CCCCCcChhhhccccccccchhhhccCCCccceeeccchhhccch---hhcCCc
Confidence 3334333345555554444 334455554322 32 23333455555444 3346655555677 466778
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCChhh
Q 048474 262 MNHMEQTLSQNGYQPNTSSTSNEEVPRPELPSNERGLPTPEALNIVLQRAQRLLSGHTVAALSHIAGRLEQEGASSDPNI 341 (958)
Q Consensus 262 l~rm~~~f~~ng~q~~~~s~~~~~~~~~~~~~~~~glptp~~L~~v~~st~qLL~gqA~~~Ls~la~~le~~~~~td~~~ 341 (958)
++.|+..+ +++|++.++..+. -+.....+|.|++|++|+++|+|||+|..+.|||+|+++|+++++++||.+
T Consensus 553 ~~qv~~a~-d~~nq~~~n~q~p-------~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~lsd~vsvSdPsa 624 (1143)
T KOG4248|consen 553 GPQVASAL-DTGNQADTNGQAP-------GGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLSDTVSVSDPSA 624 (1143)
T ss_pred chhHHHhh-hccccccccccCC-------CCCccccCCCchHHHHHHHHHHHHHhcCCcccccCccccccCCcccCCCcc
Confidence 88888888 8888776662222 123345567799999999999999999999999999999999999999999
Q ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHhhhhheeeecCCCCccccccCCCeeEeCCCCCCCcccCCCCcccCCCCCcCCCC
Q 048474 342 RGQIQ--AESVQIGFAMQHLGSLLLELGRVILTLRMGQSPVEFSVNAGPAVYISPSGPNPIMVQPFPIQTSSLFGGSVPS 419 (958)
Q Consensus 342 R~~iQ--~~a~q~G~~mq~LGalllELGRt~mtLrmgqsp~ea~VNaGpAvfIspsGPNpiMVQp~pfq~~~~fg~~~~~ 419 (958)
|+.+| ++.+|.|.+|+|||+.+|||||||+|+|||+| .+|+||||||||+|+||+|++|||.+-...|-.+..+
T Consensus 625 ral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~p~l~Tsi~s~ 700 (1143)
T KOG4248|consen 625 RALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHSPELFTSIRSG 700 (1143)
T ss_pred hhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccCchhhcccccc
Confidence 99999 99999999999999999999999999999999 8999999999999999999999999999999999888
Q ss_pred CCCCccCCcccccCCceeeeeeecccCcCCcccccCccCCCCCCccCccccCCCCccccCCCCceeccccceEEeecCCC
Q 048474 420 SNPMNIGPVGVGHAPRNINIHIHAGTALAPVLSTIGTRASNGDGVQGERRNATGSTELAGSGSVRVLPVRNIIAAAVPSR 499 (958)
Q Consensus 420 ~~~~~~G~~g~~~~pR~i~I~i~~gts~~~~~~~~~n~~~~~~~~qge~~n~~~~~~~~~~~~~r~~P~Rtvvaa~~~~~ 499 (958)
.++.-.++.|...++|+++|||++|+.-.+..+..+|..+.+.+.|.+..-.+.+ ++...|++
T Consensus 701 ~~~~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s-----------------~~sttPS~ 763 (1143)
T KOG4248|consen 701 NHIVLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDS-----------------PLSQTPSM 763 (1143)
T ss_pred cccccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCC-----------------ccccCCCC
Confidence 8884457899999999999999999999999999999999998888765332222 67788999
Q ss_pred CcccccccccCCCCCCCcCCCccccCchhhHHHHHHHHHHHhhhccCCCCCCCccc-----ccccccCCCCCccccCCCC
Q 048474 500 PTAAAISTVAQPGPGLSVPQLSANSGLLSSVVDQVNSQIRNFVGNMQGENQVPSAE-----VMSAGQNLSDGSMVGSYAG 574 (958)
Q Consensus 500 ~~~~~~~~~~q~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~-----~~~~~~~~~~~~~~~~~~~ 574 (958)
+...+..+.++.+++.|+ ..+|++..+++++.-+ .||+|.|. .|.+||+|..-...- -.
T Consensus 764 p~~t~l~t~~~~~~~ds~------------lq~qm~~~~~dv~n~g--~~Q~p~~ia~~~a~~~~~~~l~~l~~e~--~s 827 (1143)
T KOG4248|consen 764 PDVTNLPTGHPQPLQDST------------LQPQLRSFFPDVYNGG--HVQIPTPIAIRMALDTLGTGLEELVRES--FS 827 (1143)
T ss_pred CCcccccCCCCCCCCchh------------hhhhhhhhchhhhccc--cccccchhhhhhhhhhhccchhhhcccc--cc
Confidence 999999999999998865 6788999999988755 89999996 889999998733321 11
Q ss_pred CCCCCCCCcccccccccccCCCCCCcccccCCCCCccccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 048474 575 NEQPSSTPVNRVGELRVSLSGNTPESESQKALPEGDHVRTNEGMGSVLSSKDAPSSSSGGAQSSSSGESEDNSGNALGSI 654 (958)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (958)
+-.++-.+.+.++.. -++.+|+-|.+++.++++....+ -.-|.. +
T Consensus 828 ~~a~~~~~ds~~~pg------~~l~sEr~N~i~q~vkpltps~~----aag~~e-------------------------~ 872 (1143)
T KOG4248|consen 828 LVAVQRGVDSIIRPG------LRLLSERFNSIAQHVKPLTPSGF----AAGLLE-------------------------L 872 (1143)
T ss_pred ccCcccCcCcccccc------cchHHHHhhhhhhccccCCcccc----chhhHH-------------------------H
Confidence 111122333333333 34677899999988865522222 111222 2
Q ss_pred cccccccCCccccccccCCCCCccCCCCCCCCCCccCCCCCCCCCCcCCcCchhhHHHHHHHHhhcCCCCCCCCCCcCCC
Q 048474 655 EKQDLQEGSKAAPLGLGLGGLERKRRPRQPKTPVKSSDGGMSNAPLDQNLNSTSVGQHLLQTLASSSSVRNGIDANELSF 734 (958)
Q Consensus 655 ~~~~~~~~~~a~plglg~ggl~~krrsk~~k~~~~~~d~g~~~~~~~q~q~~~~~gqq~lq~las~~s~~~r~~~~~~~~ 734 (958)
.++..+++....+|+||++++++|+|+|..|-. ++...|++.++.+||+||.|.+-.+ +
T Consensus 873 ~nq~~pe~~a~t~l~lgv~n~E~~~rq~~~~~~----------~~~g~~~sl~~frqq~mq~l~~~va---~-------- 931 (1143)
T KOG4248|consen 873 CNQALPECLALTLLCLGVANAELAPRQNGRIRR----------MSEGVNPSLVSFRQQMMQFLLQVVA---E-------- 931 (1143)
T ss_pred HhccchhhHHHHHHhhcccchhhhhhhhccccc----------ccccccccHHHHHHHHHHHHHHhhh---c--------
Confidence 456667999999999999999999999999876 5566788999999999999998765 2
Q ss_pred CCCCcchhhcccCCCCCCCCCCCcchHHHHHHHhhhhhhhhhhhccccccCCCChHHHHHHHHHhhcChHHHHHHHHHHH
Q 048474 735 GQLPVVERVTESKQSGGQDIDSQVDTASAISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLNTVNQIAQ 814 (958)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~s~vl~sp~~~~ll~gv~~q~g~~sp~~lrnml~qltq~p~~m~tv~~i~q 814 (958)
.....+...++.+.+++....+.++|-++|.+.++.++..|.+..+|+-.++|.|+.+++|..|++|.++++
T Consensus 932 --------si~a~t~t~~~sn~rv~~s~q~~~e~~t~v~~~~~a~p~sq~~~~sp~~~tsm~Q~te~~p~~~~~v~e~a~ 1003 (1143)
T KOG4248|consen 932 --------SIPAGTDTGLGSNRRVGDSPQALPEEPTEVQGAERASPESQRENASPAPGTSMEQATERGPPPAPSVDEQAG 1003 (1143)
T ss_pred --------cCcccchhhccccccccccccccccccchhccccccCcccccccCCCCCcccHHHHhhcCCCCCCchhhhcc
Confidence 234455667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccCCCCCccCccchHHHHH-HHhHHHHHhhcCCCCCCCCCCCCCCcccCCCCCCCCCCCccccHHHHHHH
Q 048474 815 QIDTQDVGNMFSGLGGGWAGGIDLSRMVQ-QMMPVVSQALGRGSTPQPLSGTPQCSERRSSGVDNPDDPIQIGIQQVVQR 893 (958)
Q Consensus 815 qvd~qd~~nm~sg~g~gqggg~dlsrm~q-qmmpvvsq~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~~qi~l~~~~q~ 893 (958)
+++|++..+|..++..+-++++||++|++ +|||-+|.++-.|..+ +..+.+|...++. +|..|++++||
T Consensus 1004 ~~~g~ep~~m~~~~e~~~~i~~diqs~~~v~~~p~~S~a~~~Gm~~-~~~k~iq~e~~~~---------sq~l~~~~~q~ 1073 (1143)
T KOG4248|consen 1004 ASAGTEPWAMAVPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPA-KRRKTIQGEGPRH---------SQLLLSEAVQR 1073 (1143)
T ss_pred cccccCccccCCCccccccccHhHHHHhhcCCCCcccccccCCCcc-ccchhhcCCCCcH---------HHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999777 5566677766665 79999999999
Q ss_pred hhhcCChhHHHHHHHHhhhhhccCCCChHHHHHhhcCCHHHHHHHHHHHHHHHHHHhccccCC
Q 048474 894 IEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEILRSDIYQRLKGDSGR 956 (958)
Q Consensus 894 ie~~~~p~dif~av~e~a~~~~~~~~~~~~~~~el~~~e~la~ey~~~l~~dv~~rl~~~s~~ 956 (958)
++|.+.+++||++|++||.. +.++++++ +|++++.+|.+.||+||.+|||.|.+-
T Consensus 1074 ~~~S~~~~~~~~~~~~Nasi------srd~l~ns--~d~~iqe~ya~~lr~di~~r~q~Dq~~ 1128 (1143)
T KOG4248|consen 1074 AAKSAGARPLTSPIRDNASI------SRDLLANS--EDHEIQESYAQQLRSDIQKRLQEDQNY 1128 (1143)
T ss_pred Hhhccccccccccccccchh------cccccccc--hhHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999 88889988 899999999999999999999998763
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.70 E-value=4.4e-17 Score=141.17 Aligned_cols=74 Identities=36% Similarity=0.623 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+||+|+|+++|++|+|+++++|||++|.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999853
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.66 E-value=2e-16 Score=137.24 Aligned_cols=73 Identities=25% Similarity=0.294 Sum_probs=70.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+. ++++++|++++||++||++|++++|+|+++|||+|+||+|+|+++|++|+|+++++|||++|+.+
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999984 79999999999999999999999999999999999999999999999999999999999999865
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.66 E-value=2.8e-16 Score=135.68 Aligned_cols=75 Identities=33% Similarity=0.532 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+++|++++++|++++||++||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|||+++.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998754
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.64 E-value=8.9e-16 Score=131.33 Aligned_cols=75 Identities=33% Similarity=0.577 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998754
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.63 E-value=7e-16 Score=136.67 Aligned_cols=74 Identities=30% Similarity=0.474 Sum_probs=70.9
Q ss_pred EEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 24 VEINVKTLESQV-YSFQ-VDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 24 MqI~VKTLdGKT-~TLe-VdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
|+|+||+++|++ ++++ +++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 7895 8999999999999999999999999999999999999999999999999999999864
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.63 E-value=1e-15 Score=142.48 Aligned_cols=78 Identities=32% Similarity=0.474 Sum_probs=75.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
...|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++.++
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999998764
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.62 E-value=1.2e-15 Score=130.52 Aligned_cols=75 Identities=40% Similarity=0.628 Sum_probs=72.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++|||+++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998754
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.62 E-value=1.2e-15 Score=132.43 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=70.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+||++.|++++++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|||+++..+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998754
No 10
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.62 E-value=1.8e-15 Score=130.70 Aligned_cols=74 Identities=36% Similarity=0.666 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGV--PVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGI--PpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
|+|+||+++|++++++|++++||.+||++|++++++ ++++|||+|+|++|+|+++|++|+|++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999 99999999999999999999999999999999999865
No 11
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.61 E-value=1.7e-15 Score=133.09 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=69.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+|+|+||++.|+.+.++|++++||.+||++|+++.++++++|||+|.|++|+|+++|++|+|++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 489999999999999999999999999999999999999999999999999999999999999999999974
No 12
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.60 E-value=2.9e-15 Score=127.00 Aligned_cols=72 Identities=60% Similarity=0.947 Sum_probs=70.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 13
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.60 E-value=2e-15 Score=129.41 Aligned_cols=70 Identities=31% Similarity=0.511 Sum_probs=68.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+||+|+|+++|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999975
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.59 E-value=4.6e-15 Score=130.87 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=72.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
.|+|+||++.|+.++++|+++.||.+||++|+++.++++++|||+|.||.|+|+ +|++|||+++++|||+.....+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 489999999999999999999999999999999999999999999999999999 9999999999999999877543
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.56 E-value=6.5e-15 Score=128.11 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=66.9
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
++||.++|++++++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999986
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.56 E-value=8.8e-15 Score=129.15 Aligned_cols=73 Identities=32% Similarity=0.449 Sum_probs=71.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRL--IFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRL--IF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
|+|+||+++|++++++|++++||.+||++|++++++++++||| +|+|+.|+|+++|++|+|++|++|||++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 8999999999999999999999999999999999999999999 899999999999999999999999999984
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.56 E-value=1e-14 Score=125.56 Aligned_cols=71 Identities=32% Similarity=0.556 Sum_probs=67.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
|+|+||+..|+ ++++|++++||.+||++|++++++++++|||+|.||+|+|+++|++|+|+++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 599999999999999999999999999999999999999999999999999999999975
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.55 E-value=9.3e-15 Score=131.10 Aligned_cols=72 Identities=25% Similarity=0.252 Sum_probs=65.3
Q ss_pred cEEEEEEeCCCcEEEE--EecCCCCHHHHHHHHHHHhC--CCCCCeEEEECCeecCCCCCccccc--ccCCCEEEEEe
Q 048474 23 IVEINVKTLESQVYSF--QVDKNIPVTLFKEKIANDIG--VPVGQQRLIFRGKVLKDEHLLSEYH--VENGHTLHLVI 94 (958)
Q Consensus 23 tMqI~VKTLdGKT~TL--eVdpsdTV~dLKeKIaektG--IPpeqQRLIF~GKvLkDdkTLSDYG--IkDGSTIHLVl 94 (958)
.|.|+||+++++++.+ +|++++||.+||++|++..+ +++++|||||+||+|+|+++|++|. ++++++||||+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 3899999999999555 55899999999999999875 5689999999999999999999996 99999999997
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.53 E-value=2.5e-14 Score=121.03 Aligned_cols=68 Identities=44% Similarity=0.776 Sum_probs=66.2
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 29 KTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 29 KTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
|+++|++++++|++++||.+||++|++++++|+++|+|+|+|++|+|+.+|.+|+|+++++|+|++|+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999985
No 20
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=1.6e-13 Score=152.62 Aligned_cols=76 Identities=30% Similarity=0.604 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIG---VPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektG---IPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
|+|+||+++|++|+|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 79999999999999999999999999999999998 99999999999999999999999999999999999987654
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.47 E-value=8.7e-14 Score=120.69 Aligned_cols=68 Identities=34% Similarity=0.574 Sum_probs=64.7
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCC-CCcccccccCCCEEEEE
Q 048474 26 INVKTL-ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDE-HLLSEYHVENGHTLHLV 93 (958)
Q Consensus 26 I~VKTL-dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDd-kTLSDYGIkDGSTIHLV 93 (958)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|+++++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 589999 999999999999999999999999999999999999999999987 68999999999999973
No 22
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.47 E-value=1.2e-13 Score=155.84 Aligned_cols=80 Identities=35% Similarity=0.637 Sum_probs=75.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQ 101 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q 101 (958)
..|+|+||+.+. ++.|.|..+.||++||++|.+++++++++++|||.||+|||++||..|||+||+|||||+|.+....
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 569999999987 9999999999999999999999999999999999999999999999999999999999999775554
Q ss_pred C
Q 048474 102 P 102 (958)
Q Consensus 102 ~ 102 (958)
.
T Consensus 93 ~ 93 (493)
T KOG0010|consen 93 G 93 (493)
T ss_pred C
Confidence 4
No 23
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.45 E-value=1.7e-13 Score=116.42 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=67.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
|+|+||+. |+.+.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999986 99999999999999999999999999999999999999999999999999999999999974
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.45 E-value=5.3e-13 Score=120.05 Aligned_cols=81 Identities=16% Similarity=0.410 Sum_probs=76.9
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 18 KSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 18 e~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
......|.|+|++.+|++++++|.+++|+..||++++++.|+++++|||+|+|+.|+|++|+++|+|+++++|++++++.
T Consensus 6 ~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~ 85 (87)
T cd01763 6 GEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT 85 (87)
T ss_pred CCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 048474 98 A 98 (958)
Q Consensus 98 ~ 98 (958)
+
T Consensus 86 G 86 (87)
T cd01763 86 G 86 (87)
T ss_pred c
Confidence 5
No 25
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.45 E-value=1.9e-13 Score=119.61 Aligned_cols=69 Identities=32% Similarity=0.646 Sum_probs=66.0
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 31 LESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 31 LdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
++|++++|+|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+++|++|+|+++++|||+++.+++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999997653
No 26
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.42 E-value=3.9e-13 Score=118.22 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=66.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE---CCeecCCCCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF---RGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF---~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
|.|.|| +.|++|+++|++++||.+||++|++++++|+++|||+| +||.|+|+.+|++|+|++|++|+|+-
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 578899 58999999999999999999999999999999999996 99999999999999999999999974
No 27
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-13 Score=118.00 Aligned_cols=70 Identities=34% Similarity=0.576 Sum_probs=68.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
|.|+||+++||.+.+++++.++|+.+|++|+++.||||.+|||||.||.+.|++|-++|++.-|++|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999985
No 28
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.1e-13 Score=135.04 Aligned_cols=78 Identities=40% Similarity=0.625 Sum_probs=74.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQ 101 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q 101 (958)
|+|+||++.+++++++|.+++||..+|++|+++++||+++|||||.|+.|+|.++|+||+|+..++|||+++..++..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999776643
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.4e-14 Score=131.75 Aligned_cols=76 Identities=38% Similarity=0.611 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
|+++++++.|++++++|++++||..||.+|..++|+|+++|+|+|+||+|+|..||++|+|+..+|||++.|+.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999876
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.33 E-value=3e-12 Score=105.13 Aligned_cols=64 Identities=44% Similarity=0.769 Sum_probs=61.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGH 88 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGS 88 (958)
|+|+||+.+ +++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7999999999999999999999999999999999999999999999999999875
No 31
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.25 E-value=1.7e-11 Score=133.24 Aligned_cols=75 Identities=33% Similarity=0.582 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIG--VPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektG--IPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||++++.+|+++|.+++||.++|++|+...| +|+++|+|||+||+|+|+.++.+|+|+++..|.+++.+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998776
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.19 E-value=1.9e-11 Score=109.10 Aligned_cols=57 Identities=28% Similarity=0.466 Sum_probs=51.2
Q ss_pred Eec-CCCCHHHHHHHHHHHh--CC-CCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 39 QVD-KNIPVTLFKEKIANDI--GV-PVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 39 eVd-psdTV~dLKeKIaekt--GI-PpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|. .++||.+||++|++++ ++ ++++|||||.||+|+|++||++|+|++|++|||+.+
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 344 4799999999999996 46 499999999999999999999999999999999864
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.19 E-value=5.2e-11 Score=105.42 Aligned_cols=65 Identities=26% Similarity=0.359 Sum_probs=59.7
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecC-CCCCccccccc-CCCEEEEEe
Q 048474 29 KTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLK-DEHLLSEYHVE-NGHTLHLVI 94 (958)
Q Consensus 29 KTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLk-DdkTLSDYGIk-DGSTIHLVl 94 (958)
|...+++++++|++++||.+||++|++++|+|+++||| |.|+.|. |+++|++|+|+ +|+++||.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 44568999999999999999999999999999999999 9999885 77999999998 889999975
No 34
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.15 E-value=6.3e-11 Score=112.76 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=69.6
Q ss_pred CcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHh-----CCC--CCCeEEEECCeecCCCCCccccc------ccCC
Q 048474 22 AIVEINVKTLESQVY-SFQVDKNIPVTLFKEKIANDI-----GVP--VGQQRLIFRGKVLKDEHLLSEYH------VENG 87 (958)
Q Consensus 22 etMqI~VKTLdGKT~-TLeVdpsdTV~dLKeKIaekt-----GIP--peqQRLIF~GKvLkDdkTLSDYG------IkDG 87 (958)
+.+.|++|..+|..+ .+.+.+++||.+||++|++.+ ++| +++|||||.||+|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 579999999999654 578889999999999999655 444 99999999999999999999999 7778
Q ss_pred CEEEEEecCCCCCCC
Q 048474 88 HTLHLVIRQPAQSQP 102 (958)
Q Consensus 88 STIHLVlRlp~~~q~ 102 (958)
.|+||++|.+.....
T Consensus 83 ~TmHvvlr~~~~~~~ 97 (113)
T cd01814 83 ITMHVVVQPPLADKK 97 (113)
T ss_pred eEEEEEecCCCCCcc
Confidence 999999997655443
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.15 E-value=1.1e-10 Score=97.00 Aligned_cols=68 Identities=47% Similarity=0.762 Sum_probs=64.7
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 27 NVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 27 ~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+||..+|+.+.+++++++||.+||++|++.+++++++|+|+|+|+.|+|+.+|.+|++.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 37778899999999999999999999999999999999999999999999999999999999999875
No 36
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.2e-10 Score=139.67 Aligned_cols=121 Identities=31% Similarity=0.536 Sum_probs=92.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPS 103 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~f 103 (958)
++|+||++|.++.+|.|...+||++||+.|.++..|+.+.|||||+||+|.|+|++.+|+| +|.+|||+.|.+....-.
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~~~~~ 81 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQTHLP 81 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCCcccc
Confidence 4599999999999999999999999999999999999999999999999999999999999 999999999977665444
Q ss_pred cCCCCCCC--CCCCC----CCCCCCCCCCCCCCcccccccccccccccccc
Q 048474 104 SDASSGET--NGNNV----TGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ 148 (958)
Q Consensus 104 vKtssgsT--taTs~----~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq 148 (958)
.....|.- .++.+ ++..-+++. -+..+..++.+|+++|++-.
T Consensus 82 s~m~~g~~~ip~~~~~t~~~p~r~pgs~---c~~r~av~y~~~~~~n~p~~ 129 (1143)
T KOG4248|consen 82 SGMSSGTGSIPATHGGTSPPPTRGPGSS---CHDRNAVSYVMVGTFNLPSD 129 (1143)
T ss_pred ccccccccccccCCCCCCCCCCCCCCch---hhccccceeeecCCCCcccc
Confidence 44444332 12221 111222222 24455667777788876654
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.08 E-value=5.1e-10 Score=95.95 Aligned_cols=71 Identities=28% Similarity=0.517 Sum_probs=66.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV-GQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp-eqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
|+|+|+..+|+.+.+.|.+++++..|+++++++.+++. +.++|+|+|+.|.+++|+++|+|++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999974
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.85 E-value=5.3e-09 Score=98.16 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=58.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCC-CCCcccccccCCCEEEEEecCC
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKD-EHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkD-dkTLSDYGIkDGSTIHLVlRlp 97 (958)
+...++|++++||.+||.+|..+++++|++|+|+|+|+.|.| .+||++|||..+++|+|.++.|
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 456788999999999999999999999999999999999965 6899999999999999998754
No 39
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.84 E-value=2.2e-08 Score=81.83 Aligned_cols=72 Identities=42% Similarity=0.688 Sum_probs=68.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
++++++.|+++.+++.+..+|..+|.+|+.+.+++.++|+|.|.|+.|.|+.+|.+|+|..+.+++|+.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 678889999999999999999999999999999999999999999999999999999999999999998765
No 40
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.82 E-value=2.1e-08 Score=90.29 Aligned_cols=73 Identities=26% Similarity=0.544 Sum_probs=61.1
Q ss_pred EEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EECCe-----ec-CCCCCcccccccCCCEEEEEec
Q 048474 24 VEINVKTL-ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRL-IFRGK-----VL-KDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTL-dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRL-IF~GK-----vL-kDdkTLSDYGIkDGSTIHLVlR 95 (958)
++|+|+.- .....+.++.+.+||.+||++|+..+|+++..||| +|.++ .| +|+++|.+|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 56777663 23456667999999999999999999999999999 58887 45 6788999999999999999864
Q ss_pred C
Q 048474 96 Q 96 (958)
Q Consensus 96 l 96 (958)
.
T Consensus 82 ~ 82 (84)
T cd01789 82 S 82 (84)
T ss_pred C
Confidence 3
No 41
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.66 E-value=1.4e-07 Score=89.76 Aligned_cols=76 Identities=28% Similarity=0.511 Sum_probs=60.3
Q ss_pred cEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEECCeecCCCCCcccccccCCC------
Q 048474 23 IVEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIG-------VPVGQQRLIFRGKVLKDEHLLSEYHVENGH------ 88 (958)
Q Consensus 23 tMqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektG-------IPpeqQRLIF~GKvLkDdkTLSDYGIkDGS------ 88 (958)
.|.|+++..+|+ +..+.+++.+||.+||++|...+- ..+...||||.||+|+|+++|++|.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 588999999999 888999999999999999998753 245679999999999999999999887655
Q ss_pred EEEEEecCCC
Q 048474 89 TLHLVIRQPA 98 (958)
Q Consensus 89 TIHLVlRlp~ 98 (958)
++||+++...
T Consensus 82 vmHlvvrp~~ 91 (111)
T PF13881_consen 82 VMHLVVRPNA 91 (111)
T ss_dssp EEEEEE-SSS
T ss_pred EEEEEecCCC
Confidence 7999998653
No 42
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.63 E-value=1.4e-07 Score=84.83 Aligned_cols=73 Identities=25% Similarity=0.441 Sum_probs=60.1
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEC-C------eec-CCCCCcccccccCCCEEEEE
Q 048474 24 VEINVKTLES--QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFR-G------KVL-KDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 24 MqI~VKTLdG--KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~-G------KvL-kDdkTLSDYGIkDGSTIHLV 93 (958)
++|+|..... +.++.++++++||.+||.+|+..+|++++.|||.+. . ..| +|+++|.+|++++|++||++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6788887655 488999999999999999999999999999999876 2 234 56889999999999999998
Q ss_pred ecC
Q 048474 94 IRQ 96 (958)
Q Consensus 94 lRl 96 (958)
-..
T Consensus 82 D~~ 84 (87)
T PF14560_consen 82 DTN 84 (87)
T ss_dssp E-T
T ss_pred eCC
Confidence 654
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.55 E-value=1.4e-07 Score=103.25 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=62.1
Q ss_pred EEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEEC---C----eecCCCCCcccccccCCCEEEE
Q 048474 24 VEINVKTLESQVY---SFQVDKNIPVTLFKEKIANDIGV-PVGQQRLIFR---G----KVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 24 MqI~VKTLdGKT~---TLeVdpsdTV~dLKeKIaektGI-PpeqQRLIF~---G----KvLkDdkTLSDYGIkDGSTIHL 92 (958)
|+|+||..+|+.+ +++|+++.||++||++|+++.++ ++++|||++. | +.|+|+++|++||++++++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998889887 79999999999999999999986 8999999983 3 4889999999999999998765
No 44
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.54 E-value=2.7e-07 Score=82.84 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=66.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC-----eecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG-----KVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G-----KvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||.+....+++.|+|..+|.+||++|....+++ ..|||.|+. +.|.+.++|++|||..+..|.|+.+.+.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p~ 79 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFPP 79 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEEecCCC
Confidence 6899999999999999999999999999999999987 599999963 4778999999999999999999887553
No 45
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.34 E-value=9.6e-07 Score=77.97 Aligned_cols=68 Identities=28% Similarity=0.324 Sum_probs=54.3
Q ss_pred EEEEEeCC-CcEEEEEec-CCCCHHHHHHHHHHHhC-CCCCCeEEE--ECCeecCCCCCcccccccCCCEEEE
Q 048474 25 EINVKTLE-SQVYSFQVD-KNIPVTLFKEKIANDIG-VPVGQQRLI--FRGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 25 qI~VKTLd-GKT~TLeVd-psdTV~dLKeKIaektG-IPpeqQRLI--F~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
+|.++... .....++++ ++.||.+||+.|++..+ +++++|||. +.|+.|+|+++|.+|||.+|++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45555543 222234444 88999999999999986 579999995 8899999999999999999999876
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.33 E-value=2.5e-06 Score=65.27 Aligned_cols=67 Identities=36% Similarity=0.557 Sum_probs=61.4
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 28 VKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 28 VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
|+..+++...+.+.+.+|+.+||++|.++++++++.++|+++|+.+++...+.+|.+.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788999999999999999999999999999999999999999999988999999999999874
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.31 E-value=1.4e-06 Score=83.80 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=61.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccc-------cCCCEEEEEecC
Q 048474 25 EINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHV-------ENGHTLHLVIRQ 96 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGI-------kDGSTIHLVlRl 96 (958)
-|.||. ...++.++++++.||.+||++|+.....|++.|||+..+.+|+|++||+|||+ +...+|-|.+|.
T Consensus 4 FlmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 4 FLMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred EEEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 344443 23457779999999999999999999999999999977789999999999999 668899998885
No 48
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=9.2e-05 Score=69.89 Aligned_cols=78 Identities=18% Similarity=0.463 Sum_probs=72.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
...|+|+|+..++.+..++|..+.+.+.|++..+++.|+.....|++|+|+.+++.+|-+++++++++.|.++..+.+
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~g 95 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTG 95 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeeccc
Confidence 467899999878889999999999999999999999999999999999999999999999999999999999876544
No 49
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.86 E-value=2.7e-05 Score=70.45 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=44.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC---eec--CCCCCcccccccCCCEEEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG---KVL--KDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G---KvL--kDdkTLSDYGIkDGSTIHLV 93 (958)
+.|-|.|++.+| .+.|+|++++|+.+||++|++.++++.+.|.|..+- +.| .++++|+++||+.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 478999998764 677799999999999999999999999999885432 245 46889999999999999873
No 50
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.4e-05 Score=84.67 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=68.0
Q ss_pred EEEEEEeC---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE-ecCCCC
Q 048474 24 VEINVKTL---ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV-IRQPAQ 99 (958)
Q Consensus 24 MqI~VKTL---dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV-lRlp~~ 99 (958)
|.|.|+.- ....++|+|+.+..|.+||+.++++.|+|+++.|+||.||.|.|+.++..+.+..-+.+|++ +|.+..
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~~~ 80 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPWRK 80 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCcccc
Confidence 34555543 12458889999999999999999999999999999999999999999999999888999988 676666
Q ss_pred CCCCcC
Q 048474 100 SQPSSD 105 (958)
Q Consensus 100 ~q~fvK 105 (958)
.+-+.+
T Consensus 81 ~qk~ns 86 (446)
T KOG0006|consen 81 GQKFNS 86 (446)
T ss_pred cccccc
Confidence 665543
No 51
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.1e-05 Score=69.45 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=63.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
|++.+...-||+..+.+.+++||.++|+.|+..+|..+++..|--.+-+++|+-+|++|.|++|..+.|.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 5677777789999999999999999999999999999999888767778999999999999999988875
No 52
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0002 Score=82.16 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=67.3
Q ss_pred cEEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 23 IVEINVKTLESQVYSFQ-VDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLe-VdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
...|.|| |.|+.|.++ ++.++|+..||.++...+|++|++||+.++|+.|+|+-.+....|+++.+|+|+...
T Consensus 3 ~~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 3 SDTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred cceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 3567787 789999998 999999999999999999999999999999999999989999999999999999754
No 53
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.91 E-value=0.0018 Score=57.74 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=51.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-ECCeecCCCCCcccccccCCCEEEE
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV---G---QQRLI-FRGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp---e---qQRLI-F~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
.++|+|...+++.+.+.+..+.+|++|...|.+.++.+. . ..+|. -+|+.|+++++|++|+|.+|++|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 467888876678999999999999999999999988533 2 24555 5689999999999999999999987
No 54
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.00034 Score=77.63 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=65.1
Q ss_pred CCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEECCeecCCCCCcccccc--cCCCEEEEE
Q 048474 20 SDAIVEINVKTLESQ--VYSFQVDKNIPVTLFKEKIANDIG--VPVGQQRLIFRGKVLKDEHLLSEYHV--ENGHTLHLV 93 (958)
Q Consensus 20 s~etMqI~VKTLdGK--T~TLeVdpsdTV~dLKeKIaektG--IPpeqQRLIF~GKvLkDdkTLSDYGI--kDGSTIHLV 93 (958)
.+..+.++||..+.+ .++|..+.++||.+||..++..+- --..+|||||.||.|.|+..|.|.-+ +..+++|||
T Consensus 6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 345678888887754 566777899999999999999864 33467999999999999999999854 457899999
Q ss_pred ecCCCCCC
Q 048474 94 IRQPAQSQ 101 (958)
Q Consensus 94 lRlp~~~q 101 (958)
+..+....
T Consensus 86 cnsk~v~~ 93 (391)
T KOG4583|consen 86 CNSKEVVT 93 (391)
T ss_pred cCCCCCCC
Confidence 98665443
No 55
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.62 E-value=0.015 Score=51.59 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=62.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--ECCeecCCC--CCcccccccCCCEEEEE
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQ-QRLI--FRGKVLKDE--HLLSEYHVENGHTLHLV 93 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeq-QRLI--F~GKvLkDd--kTLSDYGIkDGSTIHLV 93 (958)
...+.|.||..+|+.+...+.+++||.+|.+-|......+... .+|+ |-.+.|.++ +||.+.++....+|+|-
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 4679999999999999999999999999999999998776665 7786 456788654 69999999999998873
No 56
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0088 Score=56.27 Aligned_cols=74 Identities=14% Similarity=0.294 Sum_probs=67.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+.|.++|...++.++-+.|..+.+.+.|.+..+++.|-..+..|++|+|+.++-++|-.++++++++.|..+..
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~e 96 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTE 96 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHH
Confidence 46778887778999999999999999999999999999999999999999999999999999999998876654
No 57
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=96.20 E-value=0.00045 Score=65.12 Aligned_cols=64 Identities=16% Similarity=0.018 Sum_probs=56.5
Q ss_pred cccccCCCEEEEEecCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCchhHHH
Q 048474 81 EYHVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRV 159 (958)
Q Consensus 81 DYGIkDGSTIHLVlRlp~~~q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRL 159 (958)
.|.+.+-.++|++++.+..+++++++..+.+ +.+.|.+.++|..||.+|+ ++|+|+++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~------------------~~leV~~~~TV~~lK~kI~~~~gip~~~QrL 70 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTC------------------FELRVSPFETVISVKAKIQRLEGIPVAQQHL 70 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCE------------------EEEEeCCCCcHHHHHHHHHHHhCCChHHEEE
Confidence 4667778899999999999999999988754 5589999999999999997 89999999999
Q ss_pred HHH
Q 048474 160 IGA 162 (958)
Q Consensus 160 Ifa 162 (958)
+|+
T Consensus 71 i~~ 73 (103)
T cd01802 71 IWN 73 (103)
T ss_pred EEC
Confidence 874
No 58
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.17 E-value=0.0092 Score=56.68 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=50.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-CC-eecCCCCCccccccc
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF-RG-KVLKDEHLLSEYHVE 85 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF-~G-KvLkDdkTLSDYGIk 85 (958)
|-|.||. ...++.++.+++.||.+||.+++....-|++.|||.. .. ++|+|.++|+|+|..
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4455664 3456778999999999999999999999999999987 33 688999999999753
No 59
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.93 E-value=0.015 Score=54.75 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=44.1
Q ss_pred EEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEECCeecCCCCCcccc
Q 048474 26 INVKTLE-SQVYSFQVD--KNIPVTLFKEKIANDIG--VPVGQQRLIFRGKVLKDEHLLSEY 82 (958)
Q Consensus 26 I~VKTLd-GKT~TLeVd--psdTV~dLKeKIaektG--IPpeqQRLIF~GKvLkDdkTLSDY 82 (958)
|+|+.-+ -..+.|+|. ...||..||.+|.++.. ..-.++||||+||.|.|+..|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4455444 244777777 78999999999999984 444668999999999998887664
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.72 E-value=0.044 Score=50.17 Aligned_cols=69 Identities=12% Similarity=0.406 Sum_probs=58.4
Q ss_pred EEEE--EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-----CCCeEEEECCeecCCCCCcccccccCCCEEEE
Q 048474 24 VEIN--VKTLESQVYSFQVDKNIPVTLFKEKIANDIGVP-----VGQQRLIFRGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 24 MqI~--VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIP-----peqQRLIF~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
|+|+ ++..+|.+|.|++....+|+.|-..+.+...+. -...|..-++++|.+++.|.+|+|.+|+.+.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 5555 466789999999999999999999998887633 24568889999999999999999999999875
No 61
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.005 Score=62.46 Aligned_cols=35 Identities=29% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGAL 163 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfav 163 (958)
+..+.+.++++|..+|.+|| ++|||+|+|||||+-
T Consensus 12 ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag 47 (156)
T KOG0004|consen 12 TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (156)
T ss_pred ceeeeecccccHHHHHHhhhcccCCCchhhhhhhhh
Confidence 36699999999999999998 999999999999973
No 62
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.39 E-value=0.094 Score=46.84 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=58.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeecCC---CCCcccccccCCCEEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVLKD---EHLLSEYHVENGHTLHL 92 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvLkD---dkTLSDYGIkDGSTIHL 92 (958)
...+|.||..+|+.+...+..++||.+|.+-|....+......+|+ |-.|.|.+ ++||.+.++....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4688999999999999999999999999999976666666677775 45677754 47999999988887765
No 63
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.33 E-value=0.067 Score=54.93 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=66.2
Q ss_pred EEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEEC-Ceec--CCCCCcccccccCC----CEEE
Q 048474 24 VEINVKTLES----QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQ-RLIFR-GKVL--KDEHLLSEYHVENG----HTLH 91 (958)
Q Consensus 24 MqI~VKTLdG----KT~TLeVdpsdTV~dLKeKIaektGIPpeqQ-RLIF~-GKvL--kDdkTLSDYGIkDG----STIH 91 (958)
|+|+|++++| .++.+.+..+.||.+|+.+|...++++...| .|.+. ++.| .++..+..+.-.+. .+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999998884 45543 4444 45666776654333 4789
Q ss_pred EEecCCCCCCCCcCCCC
Q 048474 92 LVIRQPAQSQPSSDASS 108 (958)
Q Consensus 92 LVlRlp~~~q~fvKtss 108 (958)
|+.++.++.-.|.+.+.
T Consensus 81 l~~rl~GGKGGFGs~Lr 97 (162)
T PF13019_consen 81 LSLRLRGGKGGFGSQLR 97 (162)
T ss_pred EEEeccCCCccHHHHHH
Confidence 99999988887766554
No 64
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.32 E-value=0.052 Score=48.07 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=47.1
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEE
Q 048474 30 TLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 30 TLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
..+++.+++.|.++.++.++-++..+++++.+++-.|.|++|.|+-+..+.-.|+.+|.++.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 357899999999999999999999999999999999999999999999999999999999875
No 65
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.14 E-value=0.14 Score=45.39 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=54.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeecCC---CCCcccccccCCCEEEEE
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVLKD---EHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvLkD---dkTLSDYGIkDGSTIHLV 93 (958)
+.+|.||..+|+.+..+...++||.+|.+-|.....- ....+|+ |-.|.|.| +.||.+.|+. .+++.+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4689999999999999999999999999999877543 4556776 44677754 7899999998 4555443
No 66
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.0049 Score=59.47 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
++++.+++|+++|..+|.+|+ ++|+||++|+|||+
T Consensus 11 KT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~ 46 (128)
T KOG0003|consen 11 KTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (128)
T ss_pred ceEEEEecccchHHHHHHHhccccCCCHHHHHHHhc
Confidence 346799999999999999998 99999999999996
No 67
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.50 E-value=0.21 Score=45.37 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=55.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC-CCCCeEEE--ECCeecCC-CCCcccccccCCCEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGV-PVGQQRLI--FRGKVLKD-EHLLSEYHVENGHTL 90 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGI-PpeqQRLI--F~GKvLkD-dkTLSDYGIkDGSTI 90 (958)
.+.+|.||..+|+.+..++..++||.+|++-|.....- ......|+ |-.|.|.| +.||.|.|+.+..++
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 36789999999999999999999999999999987642 23556775 66788854 789999999865443
No 68
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.071 Score=56.75 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=56.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
.++.+.+.+...+|+.++|.++..+.++.+.-||++|.|++|-|...|.+|+|+.|....|-
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 46788899999999999999999999999999999999999999999999999999544433
No 69
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.012 Score=51.87 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCCCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 126 APRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 126 tp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+...++|.|.|+.+|..++ ++|+||.+|||||+
T Consensus 9 t~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~ 46 (70)
T KOG0005|consen 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYA 46 (70)
T ss_pred ccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhc
Confidence 34557789999999999999997 99999999999996
No 70
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.14 E-value=0.32 Score=44.82 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=58.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC--eecC--------CCCCcccccccCCCEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG--KVLK--------DEHLLSEYHVENGHTLH 91 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G--KvLk--------DdkTLSDYGIkDGSTIH 91 (958)
..++|.||..+|+.+.-++..++||++|..-|.. .+..++..+|+++= |++. .+.||.+.|+.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 5789999999999999999999999999999964 45566889998765 7775 36799999999777765
Q ss_pred E
Q 048474 92 L 92 (958)
Q Consensus 92 L 92 (958)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 4
No 71
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.13 Score=54.76 Aligned_cols=72 Identities=19% Similarity=0.373 Sum_probs=56.2
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EECC-----eecC-CCCCcccccccCCCEEEEEec
Q 048474 24 VEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRL-IFRG-----KVLK-DEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektGIPpeqQRL-IF~G-----KvLk-DdkTLSDYGIkDGSTIHLVlR 95 (958)
++|+|.+..-+ ....+...++||.+||.|++..+|.+++.++| +|+| -.|. ++..|..|...+|..||++--
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56666554322 23446678999999999999999999999999 5766 2454 567999999999999999853
No 72
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.93 E-value=0.34 Score=43.64 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=57.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeecCC---CCCcccccccCCCEEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVLKD---EHLLSEYHVENGHTLHL 92 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvLkD---dkTLSDYGIkDGSTIHL 92 (958)
...+|.||..+|+.+.-....++||.+|++-|....+.. ....|+ |--|.+.+ ++||.+.|+.+..+|+|
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 357899999999999999999999999999998765432 556776 45688854 57999999998888765
No 73
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=93.76 E-value=0.094 Score=57.13 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=51.1
Q ss_pred EEEEEEeCCC-cEEE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEEEE----CCeecCCCCCcccccccCCCEEEE
Q 048474 24 VEINVKTLES-QVYS-FQVDKNIPVTLFKEKIAND-IGVPVGQQRLIF----RGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 24 MqI~VKTLdG-KT~T-LeVdpsdTV~dLKeKIaek-tGIPpeqQRLIF----~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
|+|+++...+ -..+ .......||.|++++|.++ ..+.+.++|+.+ +||.|.|+.+|++|+..++.+|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 5677776644 2344 4566789999999777666 457776555544 689999999999999999977654
No 74
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.33 E-value=0.96 Score=41.31 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=60.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeecC---CCCCcccccccCCCEEEEE
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVLK---DEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvLk---DdkTLSDYGIkDGSTIHLV 93 (958)
+..++|.||..+|+.+.-++..++++.+|..-|..+ +.+++..+|+ |=-|++. .+.||.+.|+....+|.+-
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 357899999999999999999999999999999875 7777888886 4567774 2569999999988888764
No 75
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.70 E-value=1.4 Score=40.88 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeecC---CCCCcccccccCCCEEEEEec
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVLK---DEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvLk---DdkTLSDYGIkDGSTIHLVlR 95 (958)
...-+|.||..+|+.+.-....++++.+|-.-|.. .+.+++..+|+ |=-|++. .+.||.+.|+....+|.+--|
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 45678999999999999999999999999999988 57888999997 4467773 357999999999998877543
No 76
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.10 E-value=1.1 Score=39.10 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=53.0
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEE----CC--eecCCCCCccccccc--CCCEEEEEec
Q 048474 28 VKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV-GQQRLIF----RG--KVLKDEHLLSEYHVE--NGHTLHLVIR 95 (958)
Q Consensus 28 VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp-eqQRLIF----~G--KvLkDdkTLSDYGIk--DGSTIHLVlR 95 (958)
|+.+||...+++|+++.|+.+|=++|+++.++.. +..-|.| .+ .-|+.+++|.++... ...++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 6789999999999999999999999999999653 3467777 22 367889999999877 4455555544
No 77
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=88.64 E-value=0.027 Score=49.34 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=30.5
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|++||.+|+ ++|+|+++|+|+|+
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 5689999999999999997 89999999999986
No 78
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=88.12 E-value=0.74 Score=41.72 Aligned_cols=57 Identities=25% Similarity=0.223 Sum_probs=47.9
Q ss_pred ecCCCCHHHHHHHHHHHhC-CCCCCeEEEECCeecCCCCCcccc-cccCCCEEEEEecC
Q 048474 40 VDKNIPVTLFKEKIANDIG-VPVGQQRLIFRGKVLKDEHLLSEY-HVENGHTLHLVIRQ 96 (958)
Q Consensus 40 VdpsdTV~dLKeKIaektG-IPpeqQRLIF~GKvLkDdkTLSDY-GIkDGSTIHLVlRl 96 (958)
|.+.++|.+||+.+..... ..-....|.++|+.|+|...|+++ +++++++|.|+.+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5688999999999988854 344567889999999999999998 68999999999754
No 79
>PTZ00044 ubiquitin; Provisional
Probab=85.91 E-value=0.036 Score=48.26 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=29.9
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.+.++|+.||.+++ ..|+|++.|||+|+
T Consensus 13 ~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 13 QSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 5689999999999999997 88999999999873
No 80
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=85.62 E-value=0.055 Score=47.68 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.+.+++||+.||.+|+ .+|+|++.|+|+|+
T Consensus 9 ~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 9 KDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 346689999999999999997 88999999999874
No 81
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=85.30 E-value=6.8 Score=39.18 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=54.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEEC--C----eecCCCCCccccccc-CCCEEEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQ-QRLIFR--G----KVLKDEHLLSEYHVE-NGHTLHLV 93 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeq-QRLIF~--G----KvLkDdkTLSDYGIk-DGSTIHLV 93 (958)
..+.|.|..++|.+.++.+++.+|+++|.+.|+++.|+...+ .-|.+. . ..|+..++|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 468899999999999999999999999999999999985322 344332 1 346667777777655 34455555
Q ss_pred ecC
Q 048474 94 IRQ 96 (958)
Q Consensus 94 lRl 96 (958)
.|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 443
No 82
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=84.45 E-value=3.1 Score=38.75 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=38.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCe
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGK 71 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GK 71 (958)
.++|+++. ++.|+|.+..+..+|+++|.++.++|+++.+|.|+-.
T Consensus 4 vvKV~f~~----tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFKY----TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEEE----EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 45555553 8999999999999999999999999999999999753
No 83
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=84.38 E-value=0.048 Score=47.71 Aligned_cols=33 Identities=15% Similarity=-0.004 Sum_probs=29.7
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
..+.|.++++|++||..++ +.|+|++.|+|+|+
T Consensus 13 ~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 13 CSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 4588999999999999997 89999999999865
No 84
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=83.60 E-value=4.8 Score=35.99 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=45.9
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEECCeecCCCCCcccccccCCCEEEE
Q 048474 23 IVEINVKTLE------S-QVYSFQVDKNIPVTLFKEKIANDIG-VPV--GQQRLIFRGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 23 tMqI~VKTLd------G-KT~TLeVdpsdTV~dLKeKIaektG-IPp--eqQRLIF~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
+|+|+|+... | +..++++....||.+|++.+..++. +.. ....+..+++... .++-+++|+.|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 3788888762 3 4577788888999999999987751 111 1123556777654 3456788999988
Q ss_pred Ee
Q 048474 93 VI 94 (958)
Q Consensus 93 Vl 94 (958)
+-
T Consensus 76 ~P 77 (82)
T PLN02799 76 IP 77 (82)
T ss_pred eC
Confidence 73
No 85
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=83.31 E-value=6.3 Score=34.42 Aligned_cols=56 Identities=7% Similarity=0.186 Sum_probs=42.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 35 VYSFQVDKNIPVTLFKEKIANDIGV----PVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 35 T~TLeVdpsdTV~dLKeKIaektGI----PpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
...++++...||.+|++++.+++.- .....++..+|+..+ .++-|++|+.|.++-.
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~pp 76 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPP 76 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCC
Confidence 4667777789999999999988642 234556677888876 4567899999998743
No 86
>PRK06437 hypothetical protein; Provisional
Probab=82.37 E-value=6.6 Score=34.67 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=44.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
.++...++++...||.+|-++ .+++++..-+..+|+.+. .++-+++|+.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 557788888888999887644 588888888899999987 667888999998875
No 87
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=82.16 E-value=5.4 Score=35.17 Aligned_cols=46 Identities=15% Similarity=0.347 Sum_probs=39.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG 70 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G 70 (958)
++|+++. ++.++.+.+....|..+|+.+|.+++++.....+|-|..
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5667766 678999999999999999999999999887778887764
No 88
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=82.11 E-value=0.09 Score=46.11 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=30.4
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.+.++++|+.||.+|+ ..|+|++.|+|+|+
T Consensus 10 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 10 SSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 35689999999999999997 88999999999975
No 89
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=80.98 E-value=0.12 Score=45.38 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=30.4
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+...+.+..+|+.||.+|+ ..|+|++.|+|+|+
T Consensus 11 ~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 11 TFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred EEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 46689999999999999997 88999999999874
No 90
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=80.31 E-value=9.5 Score=33.71 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=44.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
.|+|+|... .+...++++...||.+|.+.+ +++.+...+..+|+.+.. ++-+++|+.|.++-
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 456666432 235678888889999988665 677677777889998843 66688899998874
No 91
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=80.29 E-value=4.7 Score=37.88 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=38.6
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEE
Q 048474 25 EINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV---GQQRLIF 68 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp---eqQRLIF 68 (958)
.+++|...|+++.+.+.+++.+.+|++.|.+++|+.. ....|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 3578888999999999999999999999999999886 4667766
No 92
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=79.87 E-value=2.3 Score=48.76 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCC--CCcccccccCCCEEEEEecC
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDE--HLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDd--kTLSDYGIkDGSTIHLVlRl 96 (958)
..+++.+.|..+.....|+..++..++++.+..-|+|+.+.|.++ ..|.+|+++++++|.|-.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 567889999999999999999999999999999999999999754 68999999999988775543
No 93
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=79.21 E-value=9.5 Score=36.17 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=45.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEC----C-eecC-CCCCcccccccCCCEEEEEecCCC
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFR----G-KVLK-DEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~----G-KvLk-DdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..++..+...+||..+++.+.+.+.| .++-||--. + ..|. .+.||.+.+|.+|.+|.+-.|...
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 46778899999999999999999999 677888432 2 2564 567999999999999988877654
No 94
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=78.44 E-value=8.2 Score=35.66 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=47.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEECCe-----ecCCCCCccc----ccccCCCEEEEE
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV-GQQRLIFRGK-----VLKDEHLLSE----YHVENGHTLHLV 93 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp-eqQRLIF~GK-----vLkDdkTLSD----YGIkDGSTIHLV 93 (958)
|+|++.. ++..+.+.+.++++..+|+++|.+++++.. ....|-|..- .|..+.-|.+ |.....++|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 3455554 678999999999999999999999999864 5667766432 2222223333 344456677666
Q ss_pred e
Q 048474 94 I 94 (958)
Q Consensus 94 l 94 (958)
+
T Consensus 80 v 80 (82)
T cd06407 80 V 80 (82)
T ss_pred e
Confidence 5
No 95
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=78.40 E-value=0.67 Score=51.97 Aligned_cols=66 Identities=18% Similarity=0.369 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEECCeecCCCCC
Q 048474 19 SSDAIVEINVKTLESQVYSFQVD---K--NIPVTLFKEKIAN----------DIGVPVGQQR-----LIFRGKVLKDEHL 78 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVd---p--sdTV~dLKeKIae----------ktGIPpeqQR-----LIF~GKvLkDdkT 78 (958)
.....|.|++|.+-.-.+.|.+. + +.+|.+||..+++ +.++|.++.+ |.|+-|.+.|.+|
T Consensus 74 gs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~kt 153 (309)
T PF12754_consen 74 GSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKT 153 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCc
Confidence 44567999999886555555332 3 6899999999999 8899999999 9999999999999
Q ss_pred cccccc
Q 048474 79 LSEYHV 84 (958)
Q Consensus 79 LSDYGI 84 (958)
|++..-
T Consensus 154 l~e~l~ 159 (309)
T PF12754_consen 154 LAEVLA 159 (309)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 988643
No 96
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=77.92 E-value=0.22 Score=44.76 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=28.8
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
+..+.|.++++|+.||.+++ +.|+||+.||| |
T Consensus 14 t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~ 46 (75)
T cd01799 14 TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V 46 (75)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E
Confidence 45689999999999999997 99999999998 5
No 97
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=75.88 E-value=7.6 Score=38.77 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=45.1
Q ss_pred EEEE-EecC-CCCHHHHHHHHHHHh----CCCC------CCeEEEECC-----------------eec---CCCCCcccc
Q 048474 35 VYSF-QVDK-NIPVTLFKEKIANDI----GVPV------GQQRLIFRG-----------------KVL---KDEHLLSEY 82 (958)
Q Consensus 35 T~TL-eVdp-sdTV~dLKeKIaekt----GIPp------eqQRLIF~G-----------------KvL---kDdkTLSDY 82 (958)
.+.+ .|+. +.||.+||+.+.+.. +++| +..||++.- .+| +++++|.+|
T Consensus 16 ~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~ 95 (122)
T PF10209_consen 16 NLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL 95 (122)
T ss_pred eeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc
Confidence 3444 4786 999999999988874 3433 556666542 356 678899999
Q ss_pred cccCCCEEEEEec
Q 048474 83 HVENGHTLHLVIR 95 (958)
Q Consensus 83 GIkDGSTIHLVlR 95 (958)
||.+...|-++.+
T Consensus 96 gv~nETEiSfF~~ 108 (122)
T PF10209_consen 96 GVENETEISFFNM 108 (122)
T ss_pred CCCccceeeeeCH
Confidence 9999999988765
No 98
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=73.57 E-value=0.29 Score=43.78 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=29.3
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+.++|+.||.+|+ +.|++++.|||||+
T Consensus 14 ~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 14 VRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 4568899999999999996 77999999999986
No 99
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=73.13 E-value=12 Score=32.92 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=38.9
Q ss_pred cEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC
Q 048474 23 IVEINVKTLESQVYS-FQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG 70 (958)
Q Consensus 23 tMqI~VKTLdGKT~T-LeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G 70 (958)
+++|+++.- +..+. +.+....+..+|+.+|+++++.+....+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467777764 45555 899999999999999999999998888998864
No 100
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=72.23 E-value=8.7 Score=36.43 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=44.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 35 VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 35 T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
.+...++-..++..||+.++.+.++.-+.-.+..+...|+++++|.+-+|+-.-+|.+.+-
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3455778888999999999999999999999999998899999999999998888877764
No 101
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=72.23 E-value=0.27 Score=42.59 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=30.0
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
...+.+.++++|+.||.+++ +.|++++.|+|+|+
T Consensus 10 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 10 TFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 35688999999999999997 88999999999865
No 102
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=71.53 E-value=15 Score=31.72 Aligned_cols=55 Identities=5% Similarity=0.209 Sum_probs=39.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+|+.+.+ + ..|+.+|.+.+ ++.++...+-++++.+. .....++-+++|+.|.++-
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 6777776 3 35898888765 56665566778888775 2334466789999998875
No 103
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=70.96 E-value=20 Score=42.27 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=57.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC----CC--CCeEEE-ECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGV----PV--GQQRLI-FRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGI----Pp--eqQRLI-F~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
.+|+|... .+...+-+..+.+|.+|-..|.+..+- +. ..-.|. .+|..|+.+++|.+.+|.||++++|.-+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 57788764 356778888999999999999998764 22 223343 35789999999999999999999998754
Q ss_pred CCC
Q 048474 97 PAQ 99 (958)
Q Consensus 97 p~~ 99 (958)
...
T Consensus 82 ~~~ 84 (452)
T TIGR02958 82 ATE 84 (452)
T ss_pred CCC
Confidence 433
No 104
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=70.66 E-value=0.31 Score=43.18 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=31.0
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.+.++++|+.||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 8 QMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 456688999999999999997 88999999999875
No 105
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.35 E-value=11 Score=45.69 Aligned_cols=77 Identities=30% Similarity=0.401 Sum_probs=50.3
Q ss_pred CCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--C------CCCCCeEEEE--C--Ce-ecCCC---------
Q 048474 21 DAIVEINVKTLE--SQVYSFQVDKNIPVTLFKEKIANDI--G------VPVGQQRLIF--R--GK-VLKDE--------- 76 (958)
Q Consensus 21 ~etMqI~VKTLd--GKT~TLeVdpsdTV~dLKeKIaekt--G------IPpeqQRLIF--~--GK-vLkDd--------- 76 (958)
-.++.|+|-..+ ...+.++|-.+|||.++|+||-+.. + ..+++.-|-+ . |+ +|+|.
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 346777766543 3458889999999999999998773 2 2345555543 2 23 56553
Q ss_pred ----CCcccccccCCCEEEEEecCC
Q 048474 77 ----HLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 77 ----kTLSDYGIkDGSTIHLVlRlp 97 (958)
.||+.|+|.+|++|-|+.+..
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES--
T ss_pred ceEeccHhhcCCCCCceEEEeeccc
Confidence 368999999999999998865
No 106
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=69.00 E-value=9.3 Score=33.61 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=39.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
|+|+| +++. ++++.+.|+.+||.++..... -+||+|-..+++. -+++|+.|.|+.|
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d~-----~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKPDAD------IVILNGFPTKEDI-----ELKEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCcc-----ccCCCCEEEEEeC
Confidence 44554 3443 456777899999988765432 6899998887764 4566888888754
No 107
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=67.73 E-value=0.48 Score=42.67 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=27.7
Q ss_pred c-cccccccccccccccc-CCCCCchhHHHHHH
Q 048474 132 G-QVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 132 ~-~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+ .+.+.++|+.||.+|+ +.|+|+++|||+|+
T Consensus 16 l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 16 VDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred eeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 5 4788999999999997 89999999999985
No 108
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=67.01 E-value=25 Score=33.22 Aligned_cols=54 Identities=11% Similarity=0.276 Sum_probs=40.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcc
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLS 80 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLS 80 (958)
.|+|+|.. .+..+.+.|.++.+..+|.++|.+++++. ...+|-|... .|-.||.
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 46666664 67899999999999999999999999985 5566656544 3444443
No 109
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=66.99 E-value=32 Score=31.05 Aligned_cols=57 Identities=5% Similarity=0.046 Sum_probs=40.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----CC------CCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIGV-----PV------GQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektGI-----Pp------eqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
...++++. ..||.+|.+.+.+++.- -. ...++..+|+..+++.. +-+++|+.|.++-
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 34677776 89999999999988641 00 23556678877754432 6689999998874
No 110
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=66.84 E-value=39 Score=30.11 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=39.9
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhC-C-C-CCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 35 VYSFQVDKN-IPVTLFKEKIANDIG-V-P-VGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 35 T~TLeVdps-dTV~dLKeKIaektG-I-P-peqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
...+++... .||.+|++.+.+++. + . ....++..+++...+ +.-|++|+.|.++-
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P 75 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP 75 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC
Confidence 357788766 899999999999874 1 1 123456677777664 56788999998874
No 111
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=66.18 E-value=45 Score=29.89 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=42.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE--ECC----eecCCCC-Cccc--ccccCCCEEEEEecC
Q 048474 33 SQVYSFQVDKNIPVTLFKEKIANDIGVP--VGQQRLI--FRG----KVLKDEH-LLSE--YHVENGHTLHLVIRQ 96 (958)
Q Consensus 33 GKT~TLeVdpsdTV~dLKeKIaektGIP--peqQRLI--F~G----KvLkDdk-TLSD--YGIkDGSTIHLVlRl 96 (958)
+...+|.|..++|..++-..+.+++++. ++...|+ +.+ +.|.|+. .|.- .........++++|.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~~~~~F~lr~ 86 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQREDLRFLLRK 86 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCCCcEEEEEec
Confidence 6678899999999999999999999987 4555553 222 4666654 3331 233344445555553
No 112
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=65.56 E-value=0.53 Score=41.98 Aligned_cols=33 Identities=9% Similarity=0.039 Sum_probs=29.5
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
.+..+|.+.++|++||..++ ..|+||+.|+||+
T Consensus 11 ~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 11 EYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 35578889999999999997 8899999999997
No 113
>smart00455 RBD Raf-like Ras-binding domain.
Probab=65.46 E-value=17 Score=32.58 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=42.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC--eecC
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG--KVLK 74 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G--KvLk 74 (958)
+.|-..+|+...+.+.+..||.++-++|.++.++.++.-.|.+.| |.|+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence 345567999999999999999999999999999999999998855 4553
No 114
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=63.84 E-value=44 Score=29.60 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=45.7
Q ss_pred EEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEE-E-C--C--eecCCCCC-cccccc--cCCCEE
Q 048474 26 INVKTLESQ----VYSFQVDKNIPVTLFKEKIANDIGV--PVGQQRLI-F-R--G--KVLKDEHL-LSEYHV--ENGHTL 90 (958)
Q Consensus 26 I~VKTLdGK----T~TLeVdpsdTV~dLKeKIaektGI--PpeqQRLI-F-~--G--KvLkDdkT-LSDYGI--kDGSTI 90 (958)
|+|-..++. ..+|.|...+|+.+|-+.+.+++++ .+....|+ + . | +.|.|+.. |.-+.- .++...
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~~~~ 84 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDSQNS 84 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGTTTE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccccCce
Confidence 334444555 8889999999999999999999998 44556673 2 2 2 57776554 332211 122355
Q ss_pred EEEecCC
Q 048474 91 HLVIRQP 97 (958)
Q Consensus 91 HLVlRlp 97 (958)
+|++|..
T Consensus 85 ~f~lr~~ 91 (93)
T PF00788_consen 85 RFVLRRK 91 (93)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 6666543
No 115
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=63.11 E-value=8.2 Score=41.78 Aligned_cols=78 Identities=14% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEeCCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC------eecCCCCCcccccccC
Q 048474 19 SSDAIVEINVKTLES--QVYS----FQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG------KVLKDEHLLSEYHVEN 86 (958)
Q Consensus 19 ~s~etMqI~VKTLdG--KT~T----LeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G------KvLkDdkTLSDYGIkD 86 (958)
.....|-||+|..|- +++. +-|+.+++|.+|-..|.++.|+|++..-++|.- ..++...++..+.|.+
T Consensus 64 ~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~ 143 (249)
T PF12436_consen 64 DPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQD 143 (249)
T ss_dssp -TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--T
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCC
Confidence 345679999998863 3332 377899999999999999999999988887764 3578889999999999
Q ss_pred CCEEEEEecC
Q 048474 87 GHTLHLVIRQ 96 (958)
Q Consensus 87 GSTIHLVlRl 96 (958)
|++|.+=...
T Consensus 144 GdIi~fQ~~~ 153 (249)
T PF12436_consen 144 GDIICFQRAP 153 (249)
T ss_dssp TEEEEEEE--
T ss_pred CCEEEEEecc
Confidence 9998776544
No 116
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=63.07 E-value=19 Score=32.82 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=52.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEE-ECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIG---VPVGQQRLI-FRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektG---IPpeqQRLI-F~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
+|+...++.+.+...--+.++--+..+ -|++...|- -.|.+|+-++.+.|||+.++-++.|.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 677888888888887777777666654 777777764 35788999999999999999999998864
No 117
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=62.85 E-value=19 Score=32.79 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=40.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG 70 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G 70 (958)
+.|-..||+...+.|.+.+||.++-+++.++.++.++.-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456678999999999999999999999999999999988887664
No 118
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=62.76 E-value=24 Score=30.84 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=35.8
Q ss_pred EEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEECC
Q 048474 25 EINVKTLESQVYSFQVD-KNIPVTLFKEKIANDIGVPVGQQRLIFRG 70 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVd-psdTV~dLKeKIaektGIPpeqQRLIF~G 70 (958)
+|+++. ++..+.+.+. .+.+..+|+.+|.++++.+....+|-|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 455554 3678888888 99999999999999999876666776654
No 119
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=62.64 E-value=32 Score=32.11 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=46.4
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 17 GKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 17 ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+...+..|+|+| +|+.+.+ +...||.+|-+. .++++...-+-++|.++. .....++-+++|+.|.++--
T Consensus 12 ~~~~~~~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 12 EGAAMVLITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred cCCCCceEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEE
Confidence 334444566665 5776665 556788877654 467777777788998883 33445667899999988753
No 120
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=62.21 E-value=48 Score=31.84 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=53.1
Q ss_pred CcEEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEECCe--ecCCCCCcccc-----cccC
Q 048474 22 AIVEINVKTLE-SQVYSFQVDKNIPVTLFKEKIANDI----G--VPVG-QQRLIFRGK--VLKDEHLLSEY-----HVEN 86 (958)
Q Consensus 22 etMqI~VKTLd-GKT~TLeVdpsdTV~dLKeKIaekt----G--IPpe-qQRLIF~GK--vLkDdkTLSDY-----GIkD 86 (958)
..+.|.|+..+ ...+++.|++++|+.+|.+.+-.+. + -+++ +..|--.|+ -|..+..|.+| .++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 46777777654 3569999999999999999887772 1 2222 455545564 46677788877 4677
Q ss_pred CCEEEEEecC
Q 048474 87 GHTLHLVIRQ 96 (958)
Q Consensus 87 GSTIHLVlRl 96 (958)
+..+||++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 8889988764
No 121
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=61.99 E-value=50 Score=31.14 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=50.5
Q ss_pred CCcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHh--CCCCC----CeEEEECCe--ecCCCCCcccc-----cccC
Q 048474 21 DAIVEINVKTL-ESQVYSFQVDKNIPVTLFKEKIANDI--GVPVG----QQRLIFRGK--VLKDEHLLSEY-----HVEN 86 (958)
Q Consensus 21 ~etMqI~VKTL-dGKT~TLeVdpsdTV~dLKeKIaekt--GIPpe----qQRLIF~GK--vLkDdkTLSDY-----GIkD 86 (958)
...+.|.|... ....++|.|+.+.|+.+|.+++..+. ..... +.-|--.|+ -|..+..|.+| .++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 35688888888 46679999999999999999888772 22221 445545564 56688889998 4577
Q ss_pred CCEEEEEec
Q 048474 87 GHTLHLVIR 95 (958)
Q Consensus 87 GSTIHLVlR 95 (958)
+-.++|++.
T Consensus 94 ~~~~~L~Lv 102 (106)
T PF00794_consen 94 GKDPHLVLV 102 (106)
T ss_dssp T--EEEEEE
T ss_pred CCCcEEEEE
Confidence 778888764
No 122
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=59.26 E-value=44 Score=31.72 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=43.6
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEC-------CeecCCCCCcccc
Q 048474 25 EINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFR-------GKVLKDEHLLSEY 82 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~-------GKvLkDdkTLSDY 82 (958)
-|+|-..||...+|.|+..+|+.++-+.+..+.++..+.-.-+|. .|.++|+..|-++
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 456666799999999999999999999999998865544322221 3677888766554
No 123
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=58.33 E-value=20 Score=41.69 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=52.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEE--CCeecCC-CCCcccccccCCCEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGV-PVGQQRLIF--RGKVLKD-EHLLSEYHVENGHTL 90 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGI-PpeqQRLIF--~GKvLkD-dkTLSDYGIkDGSTI 90 (958)
.+-.|.||..||+.+.+.++...||.+|+..|.....- +...+-|++ --|.|.| +.||++-++.+-..|
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34567777789999999999999999999999988653 334566654 3588865 679999999875443
No 124
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=58.17 E-value=1.5 Score=42.49 Aligned_cols=34 Identities=15% Similarity=-0.016 Sum_probs=30.7
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
...+.|.+++||+.+|..|+ +.+++|+.|+|++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 34578999999999999996 99999999999987
No 125
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=57.17 E-value=0.81 Score=39.39 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=29.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
..+.+.++.+|+.||.+++ ..|+|++.|||+|+
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred EEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 4478899999999999997 88999999999874
No 126
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=56.69 E-value=34 Score=29.55 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=47.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 35 VYSFQVDKNIPVTLFKEKIANDIG--VPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 35 T~TLeVdpsdTV~dLKeKIaektG--IPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
...+.+....||.+|.+++..++. .......+..+|+.+.+ .-.++-+++|+.|.++--
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEES
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECC
Confidence 667788899999999999988863 12366788889998887 366778899999998753
No 127
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=56.46 E-value=1.2 Score=40.78 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=22.3
Q ss_pred ccccccccccccc-C--CCCC-chhHHHHHH
Q 048474 136 HSVLLGTFNVGDQ-G--EGIA-PDLTRVIGA 162 (958)
Q Consensus 136 PsdTVgt~Kv~Iq-~--eGIP-PdqQRLIfa 162 (958)
.++||+.||.+|+ + +|++ +++|||||+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~ 49 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHC 49 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence 3569999999997 5 5776 899999985
No 128
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=53.94 E-value=58 Score=37.55 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=39.1
Q ss_pred HHHHhhhhhhhhhhhccccccCCCChHHHHHHHHHhh-cChHHHHHHHHHHHhhccccccccccCCCCC
Q 048474 764 ISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLT-QSPQVLNTVNQIAQQIDTQDVGNMFSGLGGG 831 (958)
Q Consensus 764 ~s~vl~sp~~~~ll~gv~~q~g~~sp~~lrnml~qlt-q~p~~m~tv~~i~qqvd~qd~~nm~sg~g~g 831 (958)
+..+++.|-|-.|-+=|. .-|..|.-|||||- +|||++-.|++=- ++.=+|+..+-.|
T Consensus 216 l~fLr~~~qf~~lR~~iq-----qNP~ll~~~Lqqlg~~nP~L~q~Iq~nq-----e~Fl~mlnep~~~ 274 (340)
T KOG0011|consen 216 LEFLRNQPQFQQLRQMIQ-----QNPELLHPLLQQLGKQNPQLLQLIQENQ-----EAFLQLLNEPVEG 274 (340)
T ss_pred hhhhhccHHHHHHHHHHh-----hCHHHHHHHHHHHhhhCHHHHHHHHHHH-----HHHHHHhhccccc
Confidence 555666777766655553 45889999999985 6999988776532 2445676655444
No 129
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=52.63 E-value=40 Score=29.44 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|+.+.+. ...||.+|-+. .+++....-+.++++.+..++- ..+ +++|+.|.++.-
T Consensus 6 NG~~~~~~--~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEVD--EQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTA 61 (65)
T ss_pred CCEEEEcC--CCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEee
Confidence 67766653 56787776543 5788888999999997753322 235 899999988753
No 130
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.56 E-value=17 Score=41.84 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=44.5
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCeEEEE---CCeec-----CCCCCcccccccCCCEEEEEe
Q 048474 39 QVDKNIPVTLFKEKIANDIGVPVGQQRLIF---RGKVL-----KDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 39 eVdpsdTV~dLKeKIaektGIPpeqQRLIF---~GKvL-----kDdkTLSDYGIkDGSTIHLVl 94 (958)
-|+-.-||-+||+++..+.|+.+.+.||+| .||.- ..+..|-.|+|++|+.+.+-.
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe 416 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE 416 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence 344456999999999999999999999988 45532 335778899999999886643
No 131
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=52.56 E-value=42 Score=31.52 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=29.9
Q ss_pred EEEEEeCCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 048474 25 EINVKTLESQVYSFQVDK--NIPVTLFKEKIANDIGVP 60 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVdp--sdTV~dLKeKIaektGIP 60 (958)
+|++.. +|.+..+.+.+ +.+..+|++.|.+.++++
T Consensus 2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 455554 67889999988 889999999999999998
No 132
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=52.32 E-value=1 Score=40.26 Aligned_cols=33 Identities=3% Similarity=-0.147 Sum_probs=29.3
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+..+|++||..|+ +.|++++.|||+|+
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 5588899999999999996 77999999999866
No 133
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=52.32 E-value=50 Score=31.25 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=46.1
Q ss_pred EEEEeCCCcEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CCeEEEECCe-----ecCCCCCcccc-----cccCCCE
Q 048474 26 INVKTLESQVYSFQVD-----KNIPVTLFKEKIANDIGVPV-GQQRLIFRGK-----VLKDEHLLSEY-----HVENGHT 89 (958)
Q Consensus 26 I~VKTLdGKT~TLeVd-----psdTV~dLKeKIaektGIPp-eqQRLIF~GK-----vLkDdkTLSDY-----GIkDGST 89 (958)
|+|+. ++....|.+. ++.+..+|+++|.+.+.+++ ....|.|... .|.++.-|.++ ......+
T Consensus 3 vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~ 81 (91)
T cd06398 3 VKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNP 81 (91)
T ss_pred EEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCce
Confidence 45554 5667777776 47999999999999999987 5667777542 34444333332 2235677
Q ss_pred EEEEec
Q 048474 90 LHLVIR 95 (958)
Q Consensus 90 IHLVlR 95 (958)
|.|.++
T Consensus 82 lrl~v~ 87 (91)
T cd06398 82 LRIDVT 87 (91)
T ss_pred EEEEEE
Confidence 777765
No 134
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=51.22 E-value=66 Score=28.89 Aligned_cols=55 Identities=18% Similarity=0.063 Sum_probs=40.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC--eecCCCCCcc
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG--KVLKDEHLLS 80 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G--KvLkDdkTLS 80 (958)
+.|-..+++...+.|.+.+||.++-.++.++.++.++...+...| |.|..+....
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCcee
Confidence 456668999999999999999999999999999998877665444 5565554443
No 135
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=51.00 E-value=1.3 Score=38.07 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.2
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+.++|+.||.+++ ..|+|++.|+|+|+
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred EEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 5588999999999999997 88999999999863
No 136
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=49.41 E-value=1.7 Score=37.19 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=28.8
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.++.+|+.||.+++ ..|+|++.|+|+|.
T Consensus 12 ~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 12 HDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 4477889999999999997 88999999999864
No 137
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=45.78 E-value=88 Score=33.29 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=60.6
Q ss_pred CcEEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EECCe---ecCCCCCcccccccCCCEE
Q 048474 22 AIVEINVKTLES---QVYSFQVDKNIPVTLFKEKIANDIGVPVG---QQRL--IFRGK---VLKDEHLLSEYHVENGHTL 90 (958)
Q Consensus 22 etMqI~VKTLdG---KT~TLeVdpsdTV~dLKeKIaektGIPpe---qQRL--IF~GK---vLkDdkTLSDYGIkDGSTI 90 (958)
..|+|+.-..+- +.+.+.|..+.||.+|.+++.++.+++.+ ..|| ++++| ++..+..|.+. .+...+
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~ 96 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITL 96 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCccee
Confidence 346666554332 35788999999999999999999998765 5565 56776 56777777765 333333
Q ss_pred EEEecCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCc-hhHHHHHHHH
Q 048474 91 HLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAP-DLTRVIGALI 164 (958)
Q Consensus 91 HLVlRlp~~~q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPP-dqQRLIfavL 164 (958)
++-.-........ ....+..--.-.+=...++..-.....+.|.+++++..+|..++ +.|++. +..++-|+++
T Consensus 97 r~E~ip~ee~~~~-~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv 171 (213)
T PF14533_consen 97 RIEEIPEEELNLD-DESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIV 171 (213)
T ss_dssp EEEE--GGGSS---TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEE
T ss_pred eeecCChHHhhcc-cccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEE
Confidence 2221111111110 00000000000000001111111124468889999999998887 777766 4444445543
No 138
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=45.70 E-value=9 Score=43.35 Aligned_cols=51 Identities=33% Similarity=0.445 Sum_probs=45.0
Q ss_pred eCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcc
Q 048474 30 TLESQVYSFQVD-KNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLS 80 (958)
Q Consensus 30 TLdGKT~TLeVd-psdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLS 80 (958)
..+|.+..+.+. ....|..||.+|....+|++..|++.|.+..|+|...++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 457888888777 888999999999999999999999999999999985543
No 139
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=45.60 E-value=1e+02 Score=26.95 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|+.+.+ ....||.+|.+. .++......+-.+++.+.. ..-.++-+++|+.|.++--
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEE
Confidence 5676665 456789888765 3555556777888988742 1233445889999988753
No 140
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=44.56 E-value=68 Score=29.60 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=38.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEECCeecCCC--CCc-ccccc----cCCCEEEEEecC
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIG-VPVGQQRLIFRGKVLKDE--HLL-SEYHV----ENGHTLHLVIRQ 96 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektG-IPpeqQRLIF~GKvLkDd--kTL-SDYGI----kDGSTIHLVlRl 96 (958)
++|-+=.+++.|+.+|+..|.+++. +.|....|.. ..|+|+ +-| .+|-| ..+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~~cDLD~d~~V~DVf~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSDGCDLDPDFLVKDVFNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCCCCCCCcccEeeeeeccCCEEEEEecC
Confidence 4555557899999999999999986 4455444432 223332 222 13332 368888888764
No 141
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=43.77 E-value=1.8 Score=37.76 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=29.5
Q ss_pred CCcccccccccccccccccc-CCCC--CchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGI--APDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGI--PPdqQRLIfa 162 (958)
.+.+.+.+.++|+.||..++ ..|+ +++.|+|+|.
T Consensus 12 ~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 12 TFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 35688999999999999997 8898 9999999864
No 142
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=43.30 E-value=2.8 Score=37.54 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=27.7
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHH--HH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRV--IG 161 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRL--If 161 (958)
....+.++.+|+.||..|+ ..|++++.||| +|
T Consensus 15 ~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~ 49 (80)
T cd01792 15 FLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD 49 (80)
T ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc
Confidence 4467889999999999996 77999999999 65
No 143
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.16 E-value=9 Score=45.37 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=57.0
Q ss_pred cEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 23 IVEINVKTLESQ--VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 23 tMqI~VKTLdGK--T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+++|+.-...+. ...+++..+.|-.+|..+|++++||+-...|.|.+||+|.-.+||.+-|++....+.+++.
T Consensus 37 t~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 37 TESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred ceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 455554433222 2345667788999999999999999999999999999999999999999987766555543
No 144
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.38 E-value=2.4 Score=48.84 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=31.8
Q ss_pred HHHHHhhhhhhhhhhhccccccCCCChHHHHHHHHHhh-cChHHHHHHHH
Q 048474 763 AISEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLT-QSPQVLNTVNQ 811 (958)
Q Consensus 763 ~~s~vl~sp~~~~ll~gv~~q~g~~sp~~lrnml~qlt-q~p~~m~tv~~ 811 (958)
.+.-+.+.|.|..|-.=|- .-|..|.-|||||- +||+++.-|++
T Consensus 247 ~l~~Lr~~pqf~~lR~~vq-----~NP~~L~~lLqql~~~nP~l~q~I~~ 291 (378)
T TIGR00601 247 PLEFLRNQPQFQQLRQVVQ-----QNPQLLPPLLQQIGQENPQLLQQISQ 291 (378)
T ss_pred hHHHhhcCHHHHHHHHHHH-----HCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3555667788887665552 46899999999995 58999875543
No 145
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=42.16 E-value=1.9 Score=36.74 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=29.1
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.+.++|+.||..++ ..|++++.|+|+|.
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 13 HTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 5588889999999999997 88999999999873
No 146
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=41.67 E-value=22 Score=28.07 Aligned_cols=35 Identities=34% Similarity=0.627 Sum_probs=19.1
Q ss_pred HHHhhhhhhhhhhhccccccCCCChHHHHHHHHHhhcChHHHH
Q 048474 765 SEVLRSTELNGLLSGFSQQTGIGSPDVLRNMLQQLTQSPQVLN 807 (958)
Q Consensus 765 s~vl~sp~~~~ll~gv~~q~g~~sp~~lrnml~qltq~p~~m~ 807 (958)
.+++++|.+..++.-+. .-|..++.||+. ||++++
T Consensus 5 ~~~l~~P~~~~~l~~~~-----~nP~~~~~~~~~---nP~~~~ 39 (41)
T smart00727 5 ALRLQNPQVQSLLQDMQ-----QNPDMLAQMLQE---NPQLLQ 39 (41)
T ss_pred HHHHcCHHHHHHHHHHH-----HCHHHHHHHHHh---CHHhHh
Confidence 35555666666555433 345556665544 666654
No 147
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.38 E-value=74 Score=30.51 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=34.7
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE
Q 048474 28 VKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF 68 (958)
Q Consensus 28 VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF 68 (958)
++...|.+..+.|+.+.+..+|+.++.+.+++... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57778999999999999999999999999998866 55544
No 148
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=40.74 E-value=56 Score=40.91 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=38.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeec
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVL 73 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvL 73 (958)
+...+.+-++++.|+..|++.|.+.+|+|.+.|-|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 567788999999999999999999999999999999997633
No 149
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=40.64 E-value=1.2e+02 Score=36.43 Aligned_cols=76 Identities=9% Similarity=0.217 Sum_probs=62.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EECCeecCC---CCCcccccccCCCEEEEEecC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRL--IFRGKVLKD---EHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRL--IF~GKvLkD---dkTLSDYGIkDGSTIHLVlRl 96 (958)
...+|.||..+|..|+=++..++-+..+|+.|....++.....-| -|--|+..| +++|.+..+.+...|.|+-+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 568899999999999999988999999999999888877777766 466777744 478999999998888777665
Q ss_pred C
Q 048474 97 P 97 (958)
Q Consensus 97 p 97 (958)
.
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 4
No 150
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=39.20 E-value=1e+02 Score=26.64 Aligned_cols=57 Identities=9% Similarity=0.253 Sum_probs=40.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|+.+.+ +...||.+|.+++ +++.+...+..+|+.+..+ .-.++-+++|+.|.++--
T Consensus 5 Ng~~~~~--~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREV--EEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEe
Confidence 4555554 5678999988765 4677888888999887533 223456889999988753
No 151
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=39.16 E-value=2.3 Score=37.04 Aligned_cols=32 Identities=9% Similarity=-0.038 Sum_probs=27.8
Q ss_pred cccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 131 MGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 131 t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.++.+|+.||..|+ ..|++++.|+|+|+
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 478899999999999996 77899999998763
No 152
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=38.47 E-value=98 Score=26.55 Aligned_cols=57 Identities=9% Similarity=0.183 Sum_probs=39.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|+.++ +....||.+|-+. .+++.+..-+.++|+++.-++ -.++-+++|+.|.++.-
T Consensus 6 NG~~~~--~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 6 NGEPRE--LPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHA 62 (66)
T ss_pred CCeEEE--cCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEE
Confidence 667554 4567788877643 578888888889998775332 33455789999988753
No 153
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=38.37 E-value=3.7 Score=37.87 Aligned_cols=33 Identities=9% Similarity=-0.078 Sum_probs=25.2
Q ss_pred Ccccccccccccccccccc-C--CCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-G--EGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~--eGIPPdqQRLIfa 162 (958)
+...+.++.+|..||.++. . ...++++|||||+
T Consensus 16 ~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 16 QTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred EEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 3355589999999999886 2 2345799999985
No 154
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=38.24 E-value=36 Score=31.74 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=31.2
Q ss_pred EEEec-CCCCHHHHHHHHHH-HhCCCCC----CeEEEECCee----cCCCCCcccccccCCCEEEEE
Q 048474 37 SFQVD-KNIPVTLFKEKIAN-DIGVPVG----QQRLIFRGKV----LKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 37 TLeVd-psdTV~dLKeKIae-ktGIPpe----qQRLIF~GKv----LkDdkTLSDYGIkDGSTIHLV 93 (958)
++.++ ..+|+.+|-++|-+ +.|+..- .-+++|.... -...++|+++||.+|+.|.+.
T Consensus 1 tv~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 1 TVKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred CEEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 34555 46899999998755 4554321 3455554332 123589999999999988764
No 155
>PRK07440 hypothetical protein; Provisional
Probab=36.80 E-value=1.8e+02 Score=26.00 Aligned_cols=63 Identities=13% Similarity=0.286 Sum_probs=43.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
.|+|+| +|+.+ ++....||.+|-+ ..++++...-+-++|+++.- ....++-+++|+.|.++.-
T Consensus 4 ~m~i~v---NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 4 PITLQV---NGETR--TCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ceEEEE---CCEEE--EcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEE
Confidence 466665 56664 4556788887764 45677777778889988742 2234566889999988753
No 156
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=36.31 E-value=70 Score=29.99 Aligned_cols=37 Identities=8% Similarity=0.224 Sum_probs=32.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG 70 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G 70 (958)
-++.|+|.+..+..+|..+|.+++..+++.-+|.|+-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 3566688899999999999999999999999999964
No 157
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=36.14 E-value=4.1 Score=40.13 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=26.3
Q ss_pred ccccccccccccccccc------CCCCC--chhHHHHHH
Q 048474 132 GQVSHSVLLGTFNVGDQ------GEGIA--PDLTRVIGA 162 (958)
Q Consensus 132 ~~V~PsdTVgt~Kv~Iq------~eGIP--PdqQRLIfa 162 (958)
+.+.+++||++||.+|+ ++|+| +++|+|||+
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys 58 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA 58 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence 66789999999998885 45677 999999997
No 158
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=35.41 E-value=1.4 Score=37.51 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=30.0
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+...|.++.+|..||..+. ..|+|++.|+|+|.
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 46788999999999999997 88899999998874
No 159
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=35.36 E-value=1.9e+02 Score=24.72 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=35.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|+.+. +....||.+|.+.+ +++ ....+.++|+.+...+ -.+.-+++|+.|.++--
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 6 NQQTLS--LPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQP 61 (65)
T ss_pred CCEEEE--CCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEee
Confidence 566554 45677899888765 333 3456678888764322 22344788999988753
No 160
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=34.62 E-value=1.2e+02 Score=26.13 Aligned_cols=57 Identities=9% Similarity=0.289 Sum_probs=39.7
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 31 LESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 31 LdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
.+|+.+.+ ....||.+|.+++ +++++...+.++|+.+..+ .-.++-+++|+.|.++-
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT 59 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 35666655 4567899888754 5667777778899887422 23346789999998875
No 161
>PF14181 YqfQ: YqfQ-like protein
Probab=33.86 E-value=49 Score=34.58 Aligned_cols=37 Identities=38% Similarity=0.535 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHhhcChHHHHHHHHHHHhhccccccccccCCCCCccCccchHHHHHHHhHHHHHh
Q 048474 787 GSPDVLRNMLQQLTQSPQVLNTVNQIAQQIDTQDVGNMFSGLGGGWAGGIDLSRMVQQMMPVVSQA 852 (958)
Q Consensus 787 ~sp~~lrnml~qltq~p~~m~tv~~i~qqvd~qd~~nm~sg~g~gqggg~dlsrm~qqmmpvvsq~ 852 (958)
.+|.-|.+||... ..|-++||||. -||||-.|+|=.+
T Consensus 49 ~~~~~l~~mL~N~-------QKvl~vaQqv~----------------------PmIQQYGPLVrNL 85 (161)
T PF14181_consen 49 ASPASLSGMLNNV-------QKVLGVAQQVG----------------------PMIQQYGPLVRNL 85 (161)
T ss_pred cCcccHHHHHHHH-------HHHHHHHHHhh----------------------HHHHHHhHHHHhh
Confidence 4566688888765 56888999987 7999999998643
No 162
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=29.58 E-value=3.8 Score=33.64 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=28.3
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.+..+|+.||..+. ..|++++.|+|+|.
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 4577889999999999997 88999999998864
No 163
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=29.09 E-value=4e+02 Score=24.03 Aligned_cols=51 Identities=8% Similarity=0.163 Sum_probs=31.3
Q ss_pred EEecC-CCCHHHHHHHHHHHhC-----CCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 38 FQVDK-NIPVTLFKEKIANDIG-----VPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 38 LeVdp-sdTV~dLKeKIaektG-----IPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
++++. ..||.+|++.+.+++. ......++..+++... .++-|++|+.|-++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEe
Confidence 44443 4799999999998862 1122233334444322 24468899998876
No 164
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=28.58 E-value=2.4e+02 Score=24.96 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=38.4
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 32 ESQVYSFQVDKN-IPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 32 dGKT~TLeVdps-dTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|+.+.+ ... .||.+|-+ ..++++...-+-++++++.-+ ...++-+++|+.|.++.-
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEE
Confidence 6776654 343 57777654 457777777778999887432 234556899999988753
No 165
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=28.47 E-value=1.1e+02 Score=29.87 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=28.3
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 048474 26 INVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV 61 (958)
Q Consensus 26 I~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp 61 (958)
|+|-..+|.+.++.|....+-.++|.++-+|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566677999999999999999999999999999876
No 166
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=28.28 E-value=2.4e+02 Score=28.35 Aligned_cols=52 Identities=6% Similarity=0.170 Sum_probs=41.6
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeec
Q 048474 22 AIVEINVKTLES----QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVL 73 (958)
Q Consensus 22 etMqI~VKTLdG----KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvL 73 (958)
..+.|.+|...+ |...+.|++++|++.+-..|.+..+++..++-.+|-..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 456666665432 4567789999999999999999999999999998876544
No 167
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=26.06 E-value=2.1e+02 Score=26.70 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=41.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-CCeecCCCCCcccccccCCCEEEEEe
Q 048474 33 SQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF-RGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 33 GKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF-~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
++.+.+.++...||+++- +..|+|..+-.+|+ +|+...- +|-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 456788889999998864 56799999988865 7876543 47888999998864
No 168
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=25.38 E-value=2.3e+02 Score=26.37 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=39.9
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC--eecC
Q 048474 28 VKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG--KVLK 74 (958)
Q Consensus 28 VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G--KvLk 74 (958)
|-..||+...+.+.+..||.++-.++.++.|+.++.-.+++-| |.|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLV 52 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccc
Confidence 4456899999999999999999999999999999888887766 4553
No 169
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=24.91 E-value=84 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=23.4
Q ss_pred EEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 65 RLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 65 RLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
.|-|.||.|..+++|++| |-.+..-.++++..
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~ 34 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQ 34 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEec
Confidence 478999999999999999 44444445555543
No 170
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=24.58 E-value=1.6e+02 Score=32.21 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=33.9
Q ss_pred cEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 048474 23 IVEINVKTLE---SQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI 67 (958)
Q Consensus 23 tMqI~VKTLd---GKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI 67 (958)
.+.|+++... ...|++++...+|-.+|-++|+++.+++|+..||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 3677777643 34799999999999999999999999999999985
No 171
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=24.50 E-value=1.3e+02 Score=27.66 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=37.6
Q ss_pred cccHHHHHHHh-hhcCChhHHHHHHHHhhhhhccCCCChHHHHHhh
Q 048474 884 QIGIQQVVQRI-EHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSEL 928 (958)
Q Consensus 884 qi~l~~~~q~i-e~~~~p~dif~av~e~a~~~~~~~~~~~~~~~el 928 (958)
|-|+.|++++| |..+.|.|.-+.|.+.+++.|..|.-+-|-|.-|
T Consensus 3 ~~~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l~~~ARV~DYl~lf 48 (66)
T PF12085_consen 3 QDNVDEVIRSIAEETGTPAETVRRMYDDTMRELSSGARVHDYLPLF 48 (66)
T ss_pred cccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCchhhhHHHH
Confidence 66888888888 6789999999999999999998888877655544
No 172
>PRK01777 hypothetical protein; Validated
Probab=24.46 E-value=4.1e+02 Score=25.47 Aligned_cols=66 Identities=8% Similarity=0.029 Sum_probs=42.8
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEECCeecCCCCCcccccccCCCEEE
Q 048474 22 AIVEINVKTLE---SQVYSFQVDKNIPVTLFKEKIANDIGVPVG--Q-----QRLIFRGKVLKDEHLLSEYHVENGHTLH 91 (958)
Q Consensus 22 etMqI~VKTLd---GKT~TLeVdpsdTV~dLKeKIaektGIPpe--q-----QRLIF~GKvLkDdkTLSDYGIkDGSTIH 91 (958)
+.|+|.|-... .+.+.+++....||.++-+. .|++.+ + -.+.-+||.... ++-+++|+.|.
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEE
Confidence 46888876642 23466788899999986544 365544 2 245456665543 45678899998
Q ss_pred EEecC
Q 048474 92 LVIRQ 96 (958)
Q Consensus 92 LVlRl 96 (958)
++--+
T Consensus 73 IyrPL 77 (95)
T PRK01777 73 IYRPL 77 (95)
T ss_pred EecCC
Confidence 87544
No 173
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=81 Score=36.65 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=52.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEEECC---eecC--CCCCcccccccCCCE
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDI-GVPVGQQRLIFRG---KVLK--DEHLLSEYHVENGHT 89 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaekt-GIPpeqQRLIF~G---KvLk--DdkTLSDYGIkDGST 89 (958)
-.|.||+.||+....++-+.++|..|=..+.... |.+-+..+|+++= |.|. .+-||.++||.+-.+
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 3499999999988777788999998887776664 4667778999887 6664 367999999998765
No 174
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=23.30 E-value=1.6e+02 Score=36.14 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--EC----CeecCCCCC----cccccccCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVG-QQRLI--FR----GKVLKDEHL----LSEYHVENGH 88 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpe-qQRLI--F~----GKvLkDdkT----LSDYGIkDGS 88 (958)
.-..+-|+|-+.||....|.|+..+|+.++-+.+.+|..+..+ .-.|+ |- -|.++|+.. |+.+.+..+.
T Consensus 185 ~vrklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseN 264 (622)
T KOG3751|consen 185 KVRKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSEN 264 (622)
T ss_pred cccceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCc
Confidence 3344556666678999999999999999999999999875443 34443 11 257788765 5667777788
Q ss_pred EEEEEec
Q 048474 89 TLHLVIR 95 (958)
Q Consensus 89 TIHLVlR 95 (958)
.|.+..+
T Consensus 265 K~lF~k~ 271 (622)
T KOG3751|consen 265 KLLFRKN 271 (622)
T ss_pred eeEEeec
Confidence 8877654
No 175
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=22.65 E-value=1.6e+02 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQR 65 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQR 65 (958)
++|.|-..+|.+++++|..+++..++-+.+.++.++|.+-.+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 466777789999999999999999999999999999866543
No 176
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=22.55 E-value=2.4e+02 Score=28.45 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=49.0
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccc-c-c-cCCCEEEEEec
Q 048474 22 AIVEINVKTLE---SQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEY-H-V-ENGHTLHLVIR 95 (958)
Q Consensus 22 etMqI~VKTLd---GKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDY-G-I-kDGSTIHLVlR 95 (958)
+.|-|.|.... .+...+-|..+.||.+|...|.++.++.+++.-|..++.++..+.++++. . - .++-.|++...
T Consensus 26 drIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 26 GHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred CccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 34556664432 23444479999999999999999999999985445566566667777663 1 1 23445666554
No 177
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.29 E-value=2.8e+02 Score=31.68 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=54.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EECCeecCC---CCCcccccccCCCEEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRL--IFRGKVLKD---EHLLSEYHVENGHTLHL 92 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRL--IF~GKvLkD---dkTLSDYGIkDGSTIHL 92 (958)
..-.|.||..||++++..+....|...++.-|.-+.+...+-..| -|--+.+.+ .++|..+++..-.+|.|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 567888999999999999999999999999999998866543333 233455543 36788888877766544
No 178
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=21.21 E-value=2.4e+02 Score=26.90 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=41.2
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC-----eecCCCCCcccc
Q 048474 25 EINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG-----KVLKDEHLLSEY 82 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G-----KvLkDdkTLSDY 82 (958)
+.+||. +|.+..+.+...-+-..|++||+..+.+|....-|.|-. -.|.++.-|.++
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 456664 567777777777899999999999999998887776632 234455555544
No 179
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.83 E-value=1.2e+02 Score=28.10 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=40.3
Q ss_pred cHHHHHHHhhhcCChhHHHHHHHHhhhhhccCCCC-----hHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 048474 886 GIQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSG-----REDLVSELCSDEDLAEEYAEILRSDIYQR 949 (958)
Q Consensus 886 ~l~~~~q~ie~~~~p~dif~av~e~a~~~~~~~~~-----~~~~~~el~~~e~la~ey~~~l~~dv~~r 949 (958)
|.+|++++|...+.| +-.+.|+..++....+... .-.++..||...-+..+.++.--.++.+.
T Consensus 17 d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 17 DVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp -HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Confidence 899999999999999 8888888888877766622 23466667755545444444333333333
No 180
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=20.72 E-value=1.4e+02 Score=28.02 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=39.5
Q ss_pred EEecCCCCHHHHHHHHHHHhCCC-------CCCeEEEECCe-ecC------CCCCcccccccCCCEEEEE
Q 048474 38 FQVDKNIPVTLFKEKIANDIGVP-------VGQQRLIFRGK-VLK------DEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 38 LeVdpsdTV~dLKeKIaektGIP-------peqQRLIF~GK-vLk------DdkTLSDYGIkDGSTIHLV 93 (958)
|+|++++|+.+|-+.+.++..+. .+.-.|++.+- .|+ =+++|.+. +.+|..|++.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57999999999999999985433 34445555542 232 26889999 9999988774
No 181
>PF07275 ArdA: Antirestriction protein (ArdA); InterPro: IPR009899 This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].; PDB: 2W82_C.
Probab=20.33 E-value=1e+02 Score=31.01 Aligned_cols=49 Identities=33% Similarity=0.470 Sum_probs=32.4
Q ss_pred cHHHHHHHhhhcCChh-HHHHHHHHhhhhhccCCCChHHHHH-----------hhcCCHHHHHHHHHH
Q 048474 886 GIQQVVQRIEHLDPPG-EVFRAVVQNAGQLHCNGSGREDLVS-----------ELCSDEDLAEEYAEI 941 (958)
Q Consensus 886 ~l~~~~q~ie~~~~p~-dif~av~e~a~~~~~~~~~~~~~~~-----------el~~~e~la~ey~~~ 941 (958)
+|.++|++||.++... +.|.|+++ .-.++.++++ +..+++++|.+|++.
T Consensus 68 ~ln~la~~l~~~~~~~~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~~~~~~s~~d~a~~~~~e 128 (169)
T PF07275_consen 68 ELNELAEQLEELDEDEQEAFEAALE-------YFGSIDDLINLADNFDEYYYGEVDSDEDYAEYLVEE 128 (169)
T ss_dssp HHHHHHHHHHHS-HHHHTTHHHHTT-------TSSSHHHHHHTGGGEEEE--TT-SSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcChhHHHHHHHHHH-------HcCchhHHHHHHHhhHhhcCcCCCCHHHHHHHHHHh
Confidence 6889999999999443 45666661 1123455554 556888999999885
No 182
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=20.12 E-value=1.5e+02 Score=34.69 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=41.9
Q ss_pred cHHHHHHHhh--------hcCChhHHHHHHHHhhhhhccCCCChHHHHHhhcCCHHHHHHHHHHH
Q 048474 886 GIQQVVQRIE--------HLDPPGEVFRAVVQNAGQLHCNGSGREDLVSELCSDEDLAEEYAEIL 942 (958)
Q Consensus 886 ~l~~~~q~ie--------~~~~p~dif~av~e~a~~~~~~~~~~~~~~~el~~~e~la~ey~~~l 942 (958)
||.+++++-. |||-..-||++|.+ . .|.-.+-|.++..=-++||..|+.++
T Consensus 118 dLdevsekt~i~l~ScrRQfDN~kri~k~ved-~-----~g~~~~nIq~~FlLs~~la~~Yaaiv 176 (361)
T PF05427_consen 118 DLDEVSEKTGIRLKSCRRQFDNLKRIFKAVED-M-----PGPLVDNIQQHFLLSEELAKKYAAIV 176 (361)
T ss_pred cHHHHHHHhCCchhhhhhhhhcHHHHHHHHHh-C-----CCcHHHHHHHHhcCCHHHHhhhhhHh
Confidence 6888887754 99999999999944 2 55677778888888899999999876
Done!