Query 048474
Match_columns 958
No_of_seqs 290 out of 1293
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 17:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 9E-23 3.1E-27 198.6 4.6 129 16-162 13-142 (172)
2 3rt3_B Ubiquitin-like protein 99.8 8.7E-22 3E-26 188.5 4.0 121 24-162 3-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 4E-20 1.4E-24 173.4 3.8 121 24-162 1-122 (152)
4 4dwf_A HLA-B-associated transc 99.8 3.6E-18 1.2E-22 149.7 11.2 80 21-101 3-82 (90)
5 3phx_B Ubiquitin-like protein 99.7 6.7E-18 2.3E-22 144.4 10.8 77 22-98 3-79 (79)
6 3dbh_I NEDD8; cell cycle, acti 99.7 1.3E-17 4.4E-22 144.4 10.7 79 20-98 9-87 (88)
7 3v6c_B Ubiquitin; structural g 99.7 1.7E-17 5.7E-22 146.5 11.3 79 19-97 13-91 (91)
8 4hcn_B Polyubiquitin, ubiquiti 99.7 1.4E-17 4.9E-22 149.5 10.0 82 17-98 16-97 (98)
9 3plu_A Ubiquitin-like modifier 99.7 2.7E-17 9.2E-22 150.0 10.2 75 20-94 18-92 (93)
10 1wyw_B Ubiquitin-like protein 99.7 3.1E-17 1.1E-21 147.5 10.3 80 19-98 17-96 (97)
11 4fbj_B NEDD8; effector-HOST ta 99.7 2.8E-17 9.5E-22 145.0 9.7 79 24-102 1-79 (88)
12 3m62_B UV excision repair prot 99.7 1.6E-17 5.4E-22 152.0 7.9 78 23-100 1-78 (106)
13 1ttn_A DC-UBP, dendritic cell- 99.7 3.2E-17 1.1E-21 149.5 9.8 95 5-99 5-99 (106)
14 1wx8_A Riken cDNA 4931431F19; 99.7 4.8E-17 1.6E-21 144.6 10.4 81 20-101 14-94 (96)
15 1uh6_A Ubiquitin-like 5; beta- 99.7 4.1E-17 1.4E-21 150.3 10.3 78 17-94 22-99 (100)
16 2uyz_B Small ubiquitin-related 99.7 4.7E-17 1.6E-21 139.2 9.9 77 22-98 2-78 (79)
17 4eew_A Large proline-rich prot 99.7 6.2E-17 2.1E-21 141.3 10.5 74 21-95 15-88 (88)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1E-16 3.4E-21 139.2 11.7 81 20-100 4-84 (87)
19 2dzi_A Ubiquitin-like protein 99.7 8.7E-17 3E-21 137.0 10.9 78 20-97 4-81 (81)
20 1wy8_A NP95-like ring finger p 99.7 1.4E-16 4.8E-21 139.0 12.3 80 21-100 5-86 (89)
21 3mtn_B UBA80, ubcep1, ubiquiti 99.7 8.5E-17 2.9E-21 137.9 10.7 78 22-99 2-79 (85)
22 1ndd_A NEDD8, protein (ubiquit 99.7 8.9E-17 3.1E-21 134.5 10.1 75 24-98 1-75 (76)
23 1wx7_A Ubiquilin 3; ubiquitin- 99.7 2.9E-16 9.8E-21 142.8 14.3 81 20-101 14-94 (106)
24 3n3k_B Ubiquitin; hydrolase, p 99.7 5.5E-17 1.9E-21 139.4 9.0 79 22-100 2-80 (85)
25 2faz_A Ubiquitin-like containi 99.7 9.3E-17 3.2E-21 136.8 10.2 75 23-97 2-78 (78)
26 2wyq_A HHR23A, UV excision rep 99.7 1.3E-16 4.5E-21 137.6 10.9 77 22-98 4-83 (85)
27 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.2E-16 4E-21 141.3 10.4 79 24-102 2-80 (96)
28 3a9j_A Ubiquitin; protein comp 99.7 1.8E-16 6E-21 132.7 10.6 75 24-98 1-75 (76)
29 2kk8_A Uncharacterized protein 99.7 1.1E-16 3.6E-21 141.2 9.5 75 22-96 9-84 (84)
30 1yx5_B Ubiquitin; proteasome, 99.7 1.6E-16 5.4E-21 142.0 10.5 88 24-111 1-88 (98)
31 1wgd_A Homocysteine-responsive 99.7 1.9E-16 6.5E-21 140.5 10.3 80 21-100 5-90 (93)
32 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.2E-16 1.4E-20 146.7 12.9 90 10-99 3-102 (116)
33 2hj8_A Interferon-induced 17 k 99.7 1.5E-16 5E-21 140.1 9.2 79 22-100 3-81 (88)
34 1wia_A Hypothetical ubiquitin- 99.7 3E-16 1E-20 139.5 11.3 78 20-100 4-82 (95)
35 3vdz_A Ubiquitin-40S ribosomal 99.7 1.9E-16 6.4E-21 145.9 10.0 77 22-98 34-110 (111)
36 2kdi_A Ubiquitin, vacuolar pro 99.7 6.8E-17 2.3E-21 149.9 6.9 106 22-142 8-113 (114)
37 2kan_A Uncharacterized protein 99.7 4.3E-16 1.5E-20 139.9 10.9 79 21-100 13-92 (94)
38 1uel_A HHR23B, UV excision rep 99.6 7E-16 2.4E-20 137.8 12.0 75 24-98 1-78 (95)
39 4a20_A Ubiquitin-like protein 99.6 2.8E-16 9.7E-21 143.5 9.3 77 21-97 17-97 (98)
40 1yqb_A Ubiquilin 3; structural 99.6 6.4E-16 2.2E-20 140.2 11.4 81 19-100 18-98 (100)
41 1sif_A Ubiquitin; hydrophobic 99.6 4.2E-16 1.4E-20 137.5 9.4 77 23-99 9-85 (88)
42 2lxa_A Ubiquitin-like protein 99.6 2.4E-16 8.3E-21 141.0 7.2 75 23-97 1-79 (87)
43 2bwf_A Ubiquitin-like protein 99.6 1.1E-15 3.7E-20 129.1 10.8 72 24-96 5-76 (77)
44 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.2E-15 4.2E-20 138.4 11.5 79 20-99 22-100 (101)
45 1j8c_A Ubiquitin-like protein 99.6 2.5E-15 8.7E-20 141.9 13.9 79 21-100 30-108 (125)
46 2l7r_A Ubiquitin-like protein 99.6 6E-16 2.1E-20 138.2 8.8 77 20-98 16-92 (93)
47 1v5o_A 1700011N24RIK protein; 99.6 2.1E-15 7.2E-20 136.7 11.1 80 22-101 6-90 (102)
48 1v2y_A 3300001G02RIK protein; 99.6 7.3E-16 2.5E-20 142.8 8.2 80 21-100 5-100 (105)
49 3b1l_X E3 ubiquitin-protein li 99.4 4.6E-17 1.6E-21 137.7 0.0 75 24-98 1-75 (76)
50 3l0w_B Monoubiquitinated proli 99.6 1.8E-15 6.1E-20 149.3 11.0 84 24-107 1-84 (169)
51 3rt3_B Ubiquitin-like protein 99.6 2.2E-15 7.5E-20 144.3 11.1 79 21-99 79-157 (159)
52 3q3f_A Ribonuclease/ubiquitin 99.6 2.2E-15 7.6E-20 152.0 10.4 84 22-105 104-187 (189)
53 2ojr_A Ubiquitin; lanthide-bin 99.6 4.9E-15 1.7E-19 136.1 11.4 77 22-98 34-110 (111)
54 1x1m_A Ubiquitin-like protein 99.6 5.7E-15 1.9E-19 135.1 10.7 78 22-99 11-103 (107)
55 1we6_A Splicing factor, putati 99.6 3.9E-15 1.3E-19 136.6 9.0 79 21-99 25-107 (111)
56 2kdb_A Homocysteine-responsive 99.6 2.3E-15 7.7E-20 137.6 7.3 75 19-93 19-99 (99)
57 1v86_A DNA segment, CHR 7, way 99.6 4.6E-15 1.6E-19 133.3 8.8 77 18-96 12-88 (95)
58 1wju_A NEDD8 ultimate buster-1 99.6 6.1E-15 2.1E-19 135.9 9.5 75 25-100 17-95 (100)
59 1wxv_A BAG-family molecular ch 99.6 1.7E-14 5.7E-19 127.6 11.2 76 22-98 6-87 (92)
60 2gow_A HCG-1 protein, ubiquiti 99.6 7.4E-15 2.5E-19 139.7 9.3 79 21-99 15-103 (125)
61 1wgg_A Ubiquitin carboxyl-term 99.6 1.3E-14 4.4E-19 131.0 10.3 75 21-97 5-80 (96)
62 1se9_A Ubiquitin family; ubiqu 99.5 1.3E-14 4.5E-19 138.6 10.6 79 21-99 14-106 (126)
63 1v5t_A 8430435I17RIK protein; 99.5 1.1E-14 3.9E-19 129.2 9.2 76 21-97 5-84 (90)
64 2daf_A FLJ35834 protein; hypot 99.5 3.8E-14 1.3E-18 134.2 13.1 89 21-109 13-102 (118)
65 4ajy_B Transcription elongatio 99.5 9.4E-15 3.2E-19 138.3 8.9 75 24-98 1-83 (118)
66 2fnj_B Transcription elongatio 99.5 9.3E-15 3.2E-19 138.3 8.8 73 24-96 1-81 (118)
67 3u30_A Ubiquitin, linear DI-ub 99.5 1.4E-14 4.7E-19 141.1 9.4 77 22-98 95-171 (172)
68 3b08_A Polyubiquitin-C, ubiqui 99.5 3.6E-14 1.2E-18 133.0 11.4 77 22-98 75-151 (152)
69 1we7_A SF3A1 protein; structur 99.5 2.9E-14 1E-18 131.7 10.4 79 21-99 23-111 (115)
70 3m63_B Ubiquitin domain-contai 99.5 4.2E-15 1.4E-19 135.3 4.7 74 22-96 27-100 (101)
71 4dbg_A Ranbp-type and C3HC4-ty 99.5 4.1E-14 1.4E-18 131.5 10.4 75 22-96 23-100 (105)
72 3u5e_m 60S ribosomal protein L 99.5 1.5E-15 5E-20 142.9 0.1 77 24-100 1-77 (128)
73 2kd0_A LRR repeats and ubiquit 99.5 5.6E-14 1.9E-18 123.7 9.5 73 22-95 11-83 (85)
74 1oqy_A HHR23A, UV excision rep 99.5 6.5E-14 2.2E-18 153.5 11.2 80 21-100 5-88 (368)
75 4b6w_A Tubulin-specific chaper 99.4 1.3E-13 4.3E-18 123.0 7.5 75 23-97 2-85 (86)
76 3u5c_f 40S ribosomal protein S 99.4 8.5E-15 2.9E-19 143.1 0.0 77 24-100 1-77 (152)
77 2dzm_A FAS-associated factor 1 99.4 1.5E-13 5E-18 126.3 8.0 74 23-97 8-83 (100)
78 2kjr_A CG11242; UBL, ubiquitin 99.4 6.6E-13 2.2E-17 120.5 10.4 74 20-93 12-93 (95)
79 2dzj_A Synaptic glycoprotein S 99.4 3E-13 1E-17 120.7 7.3 71 22-92 9-85 (88)
80 3ai5_A Yeast enhanced green fl 99.4 7.6E-13 2.6E-17 142.3 10.5 78 20-97 230-307 (307)
81 2kj6_A Tubulin folding cofacto 99.4 1.5E-12 5.2E-17 118.7 9.4 75 21-95 12-95 (97)
82 1wf9_A NPL4 family protein; be 99.3 1.4E-12 4.7E-17 119.7 8.4 74 22-96 6-95 (107)
83 2io1_B Small ubiquitin-related 99.3 2.4E-12 8.3E-17 116.5 9.5 79 21-99 5-83 (94)
84 1v6e_A Cytoskeleton-associated 99.3 2.6E-12 8.8E-17 115.1 8.9 74 22-95 6-87 (95)
85 2xzm_9 RPS31E; ribosome, trans 99.3 2.4E-13 8.2E-18 137.6 0.0 73 24-101 1-73 (189)
86 2d07_B Ubiquitin-like protein 99.3 2.2E-11 7.4E-16 109.9 10.5 78 21-98 15-92 (93)
87 2io0_B Small ubiquitin-related 99.3 2.6E-11 9E-16 109.4 10.8 78 22-99 4-81 (91)
88 1t0y_A Tubulin folding cofacto 99.2 2.1E-11 7.2E-16 114.3 10.2 76 22-97 5-88 (122)
89 2k8h_A Small ubiquitin protein 99.2 3.4E-11 1.2E-15 112.5 10.9 84 17-100 20-103 (110)
90 1wz0_A Ubiquitin-like protein 99.2 6.3E-11 2.1E-15 109.5 11.8 81 20-100 21-101 (104)
91 1wm3_A Ubiquitin-like protein 99.2 6.2E-11 2.1E-15 101.7 9.8 71 24-94 2-72 (72)
92 2eke_C Ubiquitin-like protein 99.2 1.4E-10 4.7E-15 107.9 12.1 80 18-98 26-105 (106)
93 3a4r_A Nfatc2-interacting prot 99.2 1.4E-10 4.8E-15 101.6 11.1 73 21-93 5-78 (79)
94 3shq_A UBLCP1; phosphatase, hy 99.2 2.2E-11 7.5E-16 131.2 7.0 76 21-97 3-81 (320)
95 2kzr_A Ubiquitin thioesterase 99.1 2.8E-11 9.5E-16 106.5 5.6 72 24-96 1-78 (86)
96 1wjn_A Tubulin-folding protein 99.0 8.3E-10 2.8E-14 99.1 9.3 76 22-97 8-94 (97)
97 3kyd_D Small ubiquitin-related 98.9 4.3E-09 1.5E-13 99.4 11.0 78 20-97 37-114 (115)
98 3pge_A SUMO-modified prolifera 98.8 2.1E-08 7E-13 102.5 10.7 92 14-106 20-111 (200)
99 3tix_A Ubiquitin-like protein 98.7 2.2E-08 7.5E-13 102.2 8.5 82 19-101 53-134 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 3.7E-08 1.3E-12 101.7 0.2 87 13-100 11-97 (227)
101 2jxx_A Nfatc2-interacting prot 98.3 4.5E-06 1.5E-10 76.7 10.6 76 18-93 20-96 (97)
102 3uf8_A Ubiquitin-like protein 98.1 9.7E-06 3.3E-10 82.5 10.1 86 14-100 12-97 (209)
103 2pjh_A Protein NPL4, nuclear p 98.1 1.4E-06 5E-11 76.7 3.5 71 22-93 3-78 (80)
104 3goe_A DNA repair protein RAD6 98.0 3.3E-05 1.1E-09 69.2 10.0 73 22-94 8-81 (82)
105 3ix6_A TS, tsase, thymidylate 98.0 1E-06 3.5E-11 96.9 0.1 87 14-101 12-98 (360)
106 2l76_A Nfatc2-interacting prot 97.8 0.00013 4.5E-09 67.2 11.1 75 21-96 19-93 (95)
107 4da1_A Protein phosphatase 1K, 97.8 3E-06 1E-10 92.5 0.0 83 20-103 27-109 (389)
108 4efo_A Serine/threonine-protei 97.6 0.00021 7.1E-09 65.7 9.3 70 26-95 15-88 (94)
109 2kc2_A Talin-1, F1; FERM, adhe 97.4 0.00023 8E-09 68.5 6.4 70 25-94 13-121 (128)
110 2bps_A YUKD protein; ubiquitin 97.1 0.0006 2.1E-08 61.1 6.2 70 23-92 4-80 (81)
111 2dzk_A UBX domain-containing p 97.0 0.0086 2.9E-07 55.5 12.3 78 18-95 8-90 (109)
112 2al3_A TUG long isoform; TUG U 96.9 0.002 6.8E-08 58.9 7.7 75 23-97 9-83 (90)
113 3qx1_A FAS-associated factor 1 96.6 0.0092 3.1E-07 52.4 9.1 75 20-95 4-83 (84)
114 1wj4_A KIAA0794 protein; UBX d 96.0 0.035 1.2E-06 52.7 10.0 77 18-95 38-119 (124)
115 2cr5_A Reproduction 8; UBX dom 95.5 0.086 2.9E-06 48.7 10.5 75 20-95 20-98 (109)
116 2daj_A KIAA0977 protein, COBL- 95.2 0.1 3.4E-06 47.7 9.5 76 19-97 6-84 (91)
117 4eew_A Large proline-rich prot 95.2 0.00024 8.1E-09 61.7 -7.2 62 83-162 1-63 (88)
118 3plu_A Ubiquitin-like modifier 95.2 0.00031 1E-08 64.5 -6.8 52 93-162 15-67 (93)
119 4e71_A Plexin-B2, MM1; transme 94.8 0.15 5E-06 48.3 9.7 74 22-95 10-110 (111)
120 2r2o_A Plexin-B1; effector dom 94.5 0.14 4.7E-06 50.2 9.1 76 22-97 23-130 (138)
121 1s3s_G P47 protein; AAA ATPase 94.3 0.094 3.2E-06 49.9 7.4 73 18-90 47-123 (127)
122 2xzm_9 RPS31E; ribosome, trans 93.9 0.011 3.6E-07 60.3 0.0 34 129-162 12-46 (189)
123 3m63_B Ubiquitin domain-contai 93.3 0.0033 1.1E-07 57.1 -4.4 66 76-162 7-73 (101)
124 4a3p_A Ubiquitin carboxyl-term 93.0 0.42 1.4E-05 48.8 10.1 76 24-99 128-212 (217)
125 4e74_A Plexin-A4; RBD, structu 92.0 0.42 1.4E-05 45.6 7.9 75 22-96 12-115 (117)
126 3h6n_A Plexin-D1; structural g 91.6 0.8 2.7E-05 44.3 9.5 65 32-96 15-105 (127)
127 3jyu_A Ubiquitin carboxyl-term 91.6 0.95 3.2E-05 46.7 10.7 76 24-99 140-224 (231)
128 2lxa_A Ubiquitin-like protein 91.1 0.0064 2.2E-07 54.4 -5.2 33 130-162 14-50 (87)
129 3ivf_A Talin-1; FERM domain, c 91.1 0.75 2.6E-05 49.7 9.8 72 23-95 3-84 (371)
130 1wju_A NEDD8 ultimate buster-1 89.1 0.016 5.5E-07 53.6 -4.4 35 128-162 30-65 (100)
131 1uh6_A Ubiquitin-like 5; beta- 89.0 0.015 5.1E-07 53.8 -4.7 36 127-162 38-74 (100)
132 3b1l_X E3 ubiquitin-protein li 88.3 0.084 2.9E-06 44.1 0.0 33 130-162 13-46 (76)
133 4ajy_B Transcription elongatio 88.5 0.012 4.2E-07 56.0 -5.7 33 130-162 14-47 (118)
134 2fnj_B Transcription elongatio 88.0 0.014 4.8E-07 55.5 -5.7 33 130-162 14-47 (118)
135 1vjk_A Molybdopterin convertin 87.7 3.3 0.00011 37.0 9.8 68 22-94 8-93 (98)
136 4b6w_A Tubulin-specific chaper 87.7 0.029 1E-06 49.9 -3.6 32 130-161 17-49 (86)
137 3u5e_m 60S ribosomal protein L 87.6 0.11 3.6E-06 48.8 0.0 33 130-162 13-46 (128)
138 1oey_A P67-PHOX, neutrophil cy 87.2 1.3 4.4E-05 40.0 6.7 71 22-95 4-81 (83)
139 3phx_B Ubiquitin-like protein 87.0 0.012 4.1E-07 49.9 -6.2 33 130-162 17-50 (79)
140 3kuz_A Plexin-C1; structural g 86.7 3.3 0.00011 40.1 9.7 74 21-94 17-125 (126)
141 3u5c_f 40S ribosomal protein S 86.3 0.14 4.7E-06 50.2 0.0 33 130-162 13-46 (152)
142 2kj6_A Tubulin folding cofacto 85.8 0.03 1E-06 51.0 -4.6 34 129-162 28-62 (97)
143 1ryj_A Unknown; beta/alpha pro 84.9 8 0.00027 32.8 10.2 62 23-94 4-65 (70)
144 4dwf_A HLA-B-associated transc 84.3 0.015 5.2E-07 50.5 -7.1 33 130-162 18-51 (90)
145 2kjr_A CG11242; UBL, ubiquitin 84.1 0.033 1.1E-06 50.5 -5.2 34 129-162 29-63 (95)
146 3m62_B UV excision repair prot 83.8 0.049 1.7E-06 49.6 -4.2 33 130-162 14-47 (106)
147 3hm6_X Plexin-B1; structural g 83.4 3.1 0.00011 49.2 9.3 78 21-98 255-364 (644)
148 2dzm_A FAS-associated factor 1 83.4 0.04 1.4E-06 50.7 -5.0 33 129-161 20-53 (100)
149 1vd2_A Protein kinase C, IOTA 83.2 6.1 0.00021 36.0 9.2 50 21-71 4-54 (89)
150 2l32_A Small archaeal modifier 82.9 2.3 7.7E-05 37.0 6.1 61 24-94 1-61 (74)
151 3ig3_A Plxna3 protein; plexin 82.1 4.7 0.00016 47.6 10.1 77 21-97 231-336 (627)
152 4a20_A Ubiquitin-like protein 81.3 0.045 1.5E-06 50.0 -5.4 30 133-162 37-68 (98)
153 4dbg_A Ranbp-type and C3HC4-ty 80.9 0.05 1.7E-06 50.8 -5.3 34 128-161 37-71 (105)
154 2kk8_A Uncharacterized protein 79.8 0.054 1.8E-06 47.5 -5.3 33 130-162 23-56 (84)
155 1ef1_A Moesin; membrane, FERM 79.4 7.1 0.00024 40.5 9.5 72 23-95 1-78 (294)
156 1wgh_A Ubiquitin-like 3, HCG-1 79.1 0.064 2.2E-06 50.6 -5.3 35 128-162 27-70 (116)
157 1h4r_A Merlin; FERM, neurofibr 78.8 6.2 0.00021 41.5 8.9 74 21-95 20-98 (314)
158 2juo_A GA-binding protein alph 77.4 5.1 0.00017 36.7 6.6 60 36-95 5-64 (89)
159 3rpf_C Molybdopterin convertin 77.2 6.2 0.00021 33.5 6.9 66 24-94 1-69 (74)
160 3v6c_B Ubiquitin; structural g 76.5 0.066 2.3E-06 46.9 -5.7 35 128-162 28-63 (91)
161 3po0_A Small archaeal modifier 76.5 18 0.00062 31.3 9.8 56 34-94 18-84 (89)
162 1v6e_A Cytoskeleton-associated 76.3 0.12 4E-06 46.1 -4.2 34 129-162 20-54 (95)
163 1wgr_A Growth factor receptor- 76.2 8.9 0.0003 35.6 8.1 75 21-95 7-92 (100)
164 1wyw_B Ubiquitin-like protein 74.9 0.1 3.5E-06 46.6 -5.0 33 130-162 34-67 (97)
165 3qij_A Protein 4.1; cytoskelet 74.7 6.9 0.00024 41.2 8.0 77 19-95 13-95 (296)
166 3ivf_A Talin-1; FERM domain, c 74.4 11 0.00036 40.8 9.5 76 21-96 83-168 (371)
167 4fbj_B NEDD8; effector-HOST ta 74.3 0.11 3.6E-06 45.6 -5.0 34 129-162 12-46 (88)
168 2uyz_B Small ubiquitin-related 74.1 0.1 3.4E-06 44.2 -5.0 33 130-162 16-49 (79)
169 3q3f_A Ribonuclease/ubiquitin 73.6 0.12 4.2E-06 52.4 -5.4 33 130-162 118-151 (189)
170 2i1j_A Moesin; FERM, coiled-co 73.0 9.8 0.00034 44.2 9.4 74 21-95 2-81 (575)
171 1wgk_A Riken cDNA 2900073H19 p 71.9 21 0.00072 33.4 9.6 76 22-99 10-108 (114)
172 1tyg_B YJBS; alpha beta barrel 71.3 6 0.00021 35.6 5.6 64 21-94 18-82 (87)
173 2gow_A HCG-1 protein, ubiquiti 71.0 0.23 7.8E-06 47.4 -3.9 34 129-162 29-71 (125)
174 1we6_A Splicing factor, putati 70.9 0.17 6E-06 46.1 -4.6 33 130-162 43-77 (111)
175 1se9_A Ubiquitin family; ubiqu 70.9 0.24 8.3E-06 47.6 -3.7 32 131-162 31-70 (126)
176 2kmc_A Fermitin family homolog 70.3 16 0.00056 34.2 8.3 73 23-95 19-99 (102)
177 2hj8_A Interferon-induced 17 k 70.0 0.19 6.3E-06 43.9 -4.4 33 130-162 17-50 (88)
178 2kvr_A Ubiquitin carboxyl-term 69.9 3.3 0.00011 39.7 3.8 33 36-68 58-90 (130)
179 2kan_A Uncharacterized protein 69.7 0.16 5.5E-06 45.4 -5.0 33 130-162 27-60 (94)
180 1v5o_A 1700011N24RIK protein; 69.3 0.21 7.1E-06 45.0 -4.4 34 129-162 23-57 (102)
181 1sif_A Ubiquitin; hydrophobic 67.5 0.13 4.3E-06 45.1 -6.0 33 130-162 22-55 (88)
182 3dbh_I NEDD8; cell cycle, acti 67.5 0.22 7.4E-06 42.6 -4.5 34 129-162 24-58 (88)
183 1v86_A DNA segment, CHR 7, way 66.9 0.21 7.3E-06 44.6 -4.8 33 129-161 28-61 (95)
184 2kdi_A Ubiquitin, vacuolar pro 66.3 0.15 5.1E-06 47.2 -6.1 33 130-162 22-55 (114)
185 1v5t_A 8430435I17RIK protein; 66.3 0.25 8.5E-06 43.6 -4.4 31 130-160 19-51 (90)
186 2ojr_A Ubiquitin; lanthide-bin 66.3 0.08 2.7E-06 48.4 -7.8 33 130-162 48-81 (111)
187 1wgg_A Ubiquitin carboxyl-term 66.2 0.23 7.9E-06 44.6 -4.7 31 131-161 21-52 (96)
188 3k9o_B Ubiquitin, UBB+1; E2-25 65.5 0.15 5E-06 44.7 -6.0 33 130-162 14-47 (96)
189 2kdb_A Homocysteine-responsive 65.2 0.3 1E-05 44.5 -4.2 33 130-162 38-73 (99)
190 2l7r_A Ubiquitin-like protein 65.2 0.2 7E-06 44.4 -5.2 33 130-162 30-63 (93)
191 1wgd_A Homocysteine-responsive 64.7 0.26 9E-06 43.3 -4.6 33 130-162 22-57 (93)
192 2faz_A Ubiquitin-like containi 63.9 0.2 6.7E-06 42.1 -5.3 32 131-162 17-50 (78)
193 3dwg_C 9.5 kDa culture filtrat 63.6 25 0.00087 30.7 8.0 70 24-95 1-89 (93)
194 4hcn_B Polyubiquitin, ubiquiti 63.0 0.3 1E-05 43.5 -4.6 34 129-162 34-68 (98)
195 1fm0_D Molybdopterin convertin 62.7 21 0.00073 30.1 7.1 55 34-94 17-76 (81)
196 2wyq_A HHR23A, UV excision rep 62.3 0.28 9.7E-06 41.7 -4.7 33 130-162 18-54 (85)
197 1wx8_A Riken cDNA 4931431F19; 61.3 0.33 1.1E-05 42.7 -4.6 34 129-162 28-62 (96)
198 1t0y_A Tubulin folding cofacto 60.7 0.3 1E-05 45.7 -5.3 32 130-161 20-52 (122)
199 1wh3_A 59 kDa 2'-5'-oligoadeny 59.1 0.33 1.1E-05 41.6 -4.9 33 130-162 20-53 (87)
200 1uel_A HHR23B, UV excision rep 58.7 0.38 1.3E-05 42.6 -4.7 33 130-162 13-49 (95)
201 2qjl_A URM1, ubiquitin-related 58.6 48 0.0016 29.6 9.0 69 24-94 2-94 (99)
202 1ttn_A DC-UBP, dendritic cell- 58.3 0.41 1.4E-05 43.4 -4.7 34 129-162 35-69 (106)
203 3n3k_B Ubiquitin; hydrolase, p 58.3 0.33 1.1E-05 41.1 -4.9 33 130-162 16-49 (85)
204 1we7_A SF3A1 protein; structur 57.7 0.41 1.4E-05 44.0 -4.8 35 128-162 46-81 (115)
205 2q5w_D Molybdopterin convertin 57.3 16 0.00056 30.6 5.4 55 34-94 16-72 (77)
206 3l0w_B Monoubiquitinated proli 57.2 0.39 1.3E-05 47.3 -5.3 34 129-162 12-46 (169)
207 1ndd_A NEDD8, protein (ubiquit 57.2 0.41 1.4E-05 39.4 -4.5 33 130-162 13-46 (76)
208 4eut_A Serine/threonine-protei 57.0 28 0.00095 37.0 8.4 52 32-83 320-373 (396)
209 1wy8_A NP95-like ring finger p 56.9 0.4 1.4E-05 41.3 -4.8 33 130-162 21-55 (89)
210 2kd0_A LRR repeats and ubiquit 56.7 0.32 1.1E-05 42.5 -5.4 33 130-162 24-57 (85)
211 3mtn_B UBA80, ubcep1, ubiquiti 56.6 0.42 1.4E-05 40.4 -4.6 33 130-162 16-49 (85)
212 2bwf_A Ubiquitin-like protein 55.7 0.34 1.2E-05 40.3 -5.3 33 130-162 16-49 (77)
213 2dzj_A Synaptic glycoprotein S 55.4 0.74 2.5E-05 40.9 -3.4 30 133-162 29-60 (88)
214 2l52_A Methanosarcina acetivor 54.0 35 0.0012 30.6 7.3 68 23-94 3-94 (99)
215 2dzi_A Ubiquitin-like protein 54.0 0.51 1.7E-05 39.6 -4.5 33 130-162 20-53 (81)
216 1ip9_A BEM1 protein; ubiquitin 53.2 37 0.0013 31.0 7.2 44 22-68 11-54 (85)
217 3vdz_A Ubiquitin-40S ribosomal 53.2 0.55 1.9E-05 43.0 -4.7 33 130-162 48-81 (111)
218 1q1o_A Cell division control p 52.7 19 0.00066 33.4 5.4 39 22-60 4-49 (98)
219 4efo_A Serine/threonine-protei 51.6 0.51 1.8E-05 43.4 -5.1 35 129-163 25-60 (94)
220 2k9x_A Tburm1, uncharacterized 50.0 4.5 0.00016 37.8 0.8 74 23-98 4-101 (110)
221 1yqb_A Ubiquilin 3; structural 48.7 0.66 2.3E-05 41.8 -4.9 32 131-162 35-67 (100)
222 1yx5_B Ubiquitin; proteasome, 48.0 0.87 3E-05 40.2 -4.1 33 130-162 13-46 (98)
223 3qa8_A MGC80376 protein; kinas 47.7 16 0.00053 43.4 5.0 51 32-82 320-371 (676)
224 2klc_A Ubiquilin-1; ubiquitin- 47.5 0.65 2.2E-05 41.8 -5.1 33 130-162 37-70 (101)
225 1wxv_A BAG-family molecular ch 46.3 0.78 2.7E-05 40.1 -4.7 33 130-162 19-57 (92)
226 3a9j_A Ubiquitin; protein comp 46.2 0.7 2.4E-05 37.9 -4.7 33 130-162 13-46 (76)
227 1v2y_A 3300001G02RIK protein; 45.2 0.27 9.3E-06 45.6 -8.1 29 129-157 19-48 (105)
228 1j8c_A Ubiquitin-like protein 44.6 0.72 2.4E-05 43.5 -5.5 35 128-162 42-77 (125)
229 2kmm_A Guanosine-3',5'-BIS(dip 44.5 36 0.0012 28.0 5.5 63 24-95 1-63 (73)
230 1wf9_A NPL4 family protein; be 44.0 1.3 4.6E-05 40.3 -3.7 30 132-161 21-52 (107)
231 3au4_A Myosin-X; protein-prote 43.7 52 0.0018 37.5 8.3 61 21-81 214-280 (555)
232 1wgy_A RAP guanine nucleotide 43.7 1.3E+02 0.0046 28.1 9.6 74 23-96 9-87 (104)
233 2kl0_A Putative thiamin biosyn 43.1 23 0.00077 30.6 4.1 57 32-96 6-62 (73)
234 3ai5_A Yeast enhanced green fl 42.9 1.3 4.4E-05 48.1 -4.6 33 130-162 246-279 (307)
235 1oqy_A HHR23A, UV excision rep 42.8 1.1 3.8E-05 49.6 -5.2 33 130-162 20-56 (368)
236 2k5p_A THis protein, thiamine- 42.5 21 0.00071 31.3 3.8 61 32-97 6-67 (78)
237 2lgx_A Fermitin family homolog 41.9 11 0.00036 35.9 1.9 70 23-93 26-100 (112)
238 2ylm_A Ubiquitin carboxyl-term 41.8 17 0.00058 41.8 4.0 33 36-68 38-70 (530)
239 1wx7_A Ubiquilin 3; ubiquitin- 41.8 0.8 2.7E-05 41.3 -5.5 33 130-162 29-62 (106)
240 2ylm_A Ubiquitin carboxyl-term 40.6 24 0.00083 40.6 5.0 77 19-95 126-217 (530)
241 1x1m_A Ubiquitin-like protein 39.6 1.3 4.5E-05 40.2 -4.4 29 134-162 40-73 (107)
242 1f0z_A THis protein; ubiquitin 39.5 34 0.0012 28.3 4.5 56 32-94 6-61 (66)
243 3shq_A UBLCP1; phosphatase, hy 36.0 2.2 7.5E-05 46.2 -4.2 32 129-160 16-48 (320)
244 2cu3_A Unknown function protei 35.8 55 0.0019 27.0 5.2 56 31-94 4-59 (64)
245 2juz_A UPF0352 protein HI0840; 33.4 83 0.0028 28.5 6.1 59 887-954 16-77 (80)
246 3ge3_C Toluene-4-monooxygenase 31.6 2.6E+02 0.009 25.5 9.1 71 24-94 4-82 (84)
247 4gmv_A RAS-associated and plec 30.9 94 0.0032 33.3 7.3 75 19-93 27-112 (281)
248 2dhz_A RAP guanine nucleotide 30.6 1.5E+02 0.0051 28.5 7.8 75 22-96 8-93 (120)
249 2kzr_A Ubiquitin thioesterase 30.5 3 0.0001 36.3 -3.5 28 134-161 17-45 (86)
250 3onh_A Ubiquitin-activating en 29.5 77 0.0026 30.8 5.7 52 43-95 19-79 (127)
251 2v1y_A Phosphatidylinositol-4, 29.0 2.9E+02 0.01 26.0 9.4 74 21-95 17-104 (108)
252 2hj1_A Hypothetical protein; s 28.7 86 0.003 28.7 5.7 69 22-95 11-85 (97)
253 3tca_A Amyloid beta A4 precurs 28.3 1.3E+02 0.0043 30.5 7.5 61 21-81 32-99 (291)
254 2g1e_A Hypothetical protein TA 27.9 1.6E+02 0.0056 25.0 7.1 56 38-94 19-85 (90)
255 2inc_C TOUB protein; DIIRON, 4 26.7 2.2E+02 0.0074 26.0 7.7 60 36-95 15-82 (83)
256 1y8x_B Ubiquitin-activating en 24.4 91 0.0031 28.7 5.0 59 35-93 6-82 (98)
257 2c7h_A RBBP6, retinoblastoma-b 23.7 1.9E+02 0.0065 26.3 6.8 44 23-66 6-51 (86)
258 3pvl_A Myosin VIIA isoform 1; 23.7 1.4E+02 0.005 35.2 7.8 39 22-60 262-300 (655)
259 3hk0_A Growth factor receptor- 22.1 1.2E+02 0.004 32.1 6.0 58 25-82 10-74 (256)
260 1rws_A Hypothetical protein PF 21.4 21 0.00071 30.7 0.1 48 37-93 24-71 (77)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.86 E-value=9e-23 Score=198.60 Aligned_cols=129 Identities=34% Similarity=0.434 Sum_probs=115.7
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 16 SGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 16 ~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
........|+|+||+++|++++|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 96 QPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 96 lp~~~q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.++.+..++++..+.+ +.+.|.++++|..||.+|+ ++|+|++.|||+|.
T Consensus 93 ~~gg~~i~Vk~~~g~~------------------~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 93 LRGGMQIFVKTLTGKT------------------ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp CCCCEEEEEEESSCCE------------------EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred ccccccceeecccCcc------------------eeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 9999999887766533 6689999999999999998 88999999999874
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.83 E-value=8.7e-22 Score=188.51 Aligned_cols=121 Identities=22% Similarity=0.273 Sum_probs=113.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-E-CCeecCCCCCcccccccCCCEEEEEec-CCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI-F-RGKVLKDEHLLSEYHVENGHTLHLVIR-QPAQS 100 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI-F-~GKvLkDdkTLSDYGIkDGSTIHLVlR-lp~~~ 100 (958)
|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+++|++|+|++|++|||+++ .+..+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58888
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 101 QPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 101 q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.++++..+.+ +.+.|.++++|+.||.+|+ ++|+|++.|||+|+
T Consensus 83 ~i~vk~~~g~~------------------~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 83 SILVRNNKGRS------------------STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp EEEEECTTSCE------------------EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCE------------------EEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 99988876543 5689999999999999997 88999999999874
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.78 E-value=4e-20 Score=173.41 Aligned_cols=121 Identities=36% Similarity=0.470 Sum_probs=111.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPS 103 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~f 103 (958)
|+|+||+++|++++++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|+++++|||+.+.++.+..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 104 SDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 104 vKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+++..+. .+...+.++++|..||.+++ +.|+|++.|||+|.
T Consensus 81 Vk~~~g~------------------~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 81 VKTLTGK------------------TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp EEESSSC------------------EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred eeecCCC------------------EEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 7766543 25588999999999999997 88999999999874
No 4
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=3.6e-18 Score=149.67 Aligned_cols=80 Identities=44% Similarity=0.727 Sum_probs=74.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
+.+|+|+||+++|++++|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||+++.+...
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 899999999976554
Q ss_pred C
Q 048474 101 Q 101 (958)
Q Consensus 101 q 101 (958)
+
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=144.43 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=74.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+.+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999753
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.73 E-value=1.3e-17 Score=144.43 Aligned_cols=79 Identities=34% Similarity=0.556 Sum_probs=75.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
+...|+|+||+++|++++|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.+
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999875
No 7
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=1.7e-17 Score=146.49 Aligned_cols=79 Identities=37% Similarity=0.561 Sum_probs=75.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 19 SSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
.....|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999999864
No 8
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=149.49 Aligned_cols=82 Identities=37% Similarity=0.530 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 17 GKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 17 ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
....+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 048474 97 PA 98 (958)
Q Consensus 97 p~ 98 (958)
.+
T Consensus 96 ~G 97 (98)
T 4hcn_B 96 RG 97 (98)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.71 E-value=2.7e-17 Score=150.02 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
.+..|+|+||++.|+++.++|++++||.+||++|+++.|+|+++|||+|+||+|+|+.||++|+|++|++|||..
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999974
No 10
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=3.1e-17 Score=147.45 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=75.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 19 SSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
.+...|+|+||+++|++++|+|++++||.+||++|+++.|+|+++|||+|+|+.|+|++||++|+|+++++|||++++.+
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999865
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.70 E-value=2.8e-17 Score=144.99 Aligned_cols=79 Identities=32% Similarity=0.513 Sum_probs=72.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQP 102 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~ 102 (958)
|+|+||+++|++++|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|++++...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~ 79 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGL 79 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999877654
No 12
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.6e-17 Score=151.98 Aligned_cols=78 Identities=23% Similarity=0.427 Sum_probs=71.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
+|+|+||+++|++++|+|++++||.+||++|++++|+|+++|||+|+||+|+|+++|++|+|++|++|||+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999876543
No 13
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.2e-17 Score=149.51 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccc
Q 048474 5 YPNESSSTGNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHV 84 (958)
Q Consensus 5 as~~sSSss~~~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGI 84 (958)
.+.+++....+........|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI 84 (106)
T 1ttn_A 5 KSDIETLDIPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKI 84 (106)
T ss_dssp ----------------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCC
T ss_pred ccccccccCCCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCC
Confidence 33344433334444556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCC
Q 048474 85 ENGHTLHLVIRQPAQ 99 (958)
Q Consensus 85 kDGSTIHLVlRlp~~ 99 (958)
++|++|||+++.+..
T Consensus 85 ~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 85 PKDYVVQVIVSQPVQ 99 (106)
T ss_dssp SSSCEEEEECCCSSC
T ss_pred CCCCEEEEEEeCCCC
Confidence 999999999987644
No 14
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.8e-17 Score=144.62 Aligned_cols=81 Identities=31% Similarity=0.511 Sum_probs=76.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
+...|+|+||+. +++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++.++.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 567899999998 9999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 048474 100 SQ 101 (958)
Q Consensus 100 ~q 101 (958)
.+
T Consensus 93 ~~ 94 (96)
T 1wx8_A 93 PS 94 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.1e-17 Score=150.30 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 17 GKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 17 ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
++..+++|+|+||++.|++++|+|++++||.+||++|++++|+|+++|||+|.||+|+|+++|++|+|+++++|||+.
T Consensus 22 ~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 22 SEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 344556799999999999999999999999999999999999999999999999999999999999999999999974
No 16
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=4.7e-17 Score=139.19 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=74.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
+.|+|+||+++|+++.++|++++||.+||++|+++.++|+++|||+|+|+.|+|++||++|+|+++++|||++++.+
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998765
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=141.29 Aligned_cols=74 Identities=45% Similarity=0.727 Sum_probs=71.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+..|+|+||+++|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 8999999986
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1e-16 Score=139.17 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=76.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
++.+|+|+||+++|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|..++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 048474 100 S 100 (958)
Q Consensus 100 ~ 100 (958)
.
T Consensus 84 ~ 84 (87)
T 1wh3_A 84 P 84 (87)
T ss_dssp S
T ss_pred C
Confidence 3
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.7e-17 Score=136.98 Aligned_cols=78 Identities=33% Similarity=0.563 Sum_probs=74.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
+...|+|+||+++|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 346799999999999999999999999999999999999999999999999999999999999999999999999863
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.4e-16 Score=139.02 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=75.5
Q ss_pred CCcEEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 21 DAIVEINVKTLES-QVYSF-QVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 21 ~etMqI~VKTLdG-KT~TL-eVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
...|+|+||+++| ++++| +|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|..+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 3579999999999 79999 599999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 048474 99 QS 100 (958)
Q Consensus 99 ~~ 100 (958)
+.
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 21
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=8.5e-17 Score=137.91 Aligned_cols=78 Identities=36% Similarity=0.549 Sum_probs=74.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|..+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998765
No 22
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.69 E-value=8.9e-17 Score=134.51 Aligned_cols=75 Identities=33% Similarity=0.558 Sum_probs=72.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999765
No 23
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=2.9e-16 Score=142.84 Aligned_cols=81 Identities=31% Similarity=0.497 Sum_probs=75.9
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
....|+|+||.++++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|+++++|||++++++.
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 457899999999886 7999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CC
Q 048474 100 SQ 101 (958)
Q Consensus 100 ~q 101 (958)
..
T Consensus 93 ~~ 94 (106)
T 1wx7_A 93 AM 94 (106)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.5e-17 Score=139.38 Aligned_cols=79 Identities=34% Similarity=0.513 Sum_probs=73.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
.+|+|+||+++|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.+..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999987654
No 25
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=9.3e-17 Score=136.78 Aligned_cols=75 Identities=31% Similarity=0.496 Sum_probs=72.0
Q ss_pred cEEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 23 IVEINVKTLESQVY-SFQ-VDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 23 tMqI~VKTLdGKT~-TLe-VdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
.|+|+||+++|+++ +++ |++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 69999999999985 999 9999999999999999999999999999999999999999999999999999999864
No 26
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.68 E-value=1.3e-16 Score=137.57 Aligned_cols=77 Identities=27% Similarity=0.555 Sum_probs=71.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIAND---IGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaek---tGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..|+|+||+++|++++++|++++||.+||++|+++ +++|+++|||+|+||.|+|+++|++|+|++|++|||+++.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~~ 83 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 83 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC---
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCCC
Confidence 47999999999999999999999999999999998 889999999999999999999999999999999999998764
No 27
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.68 E-value=1.2e-16 Score=141.31 Aligned_cols=79 Identities=38% Similarity=0.588 Sum_probs=73.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQP 102 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~ 102 (958)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|..++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999877654
No 28
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.68 E-value=1.8e-16 Score=132.74 Aligned_cols=75 Identities=40% Similarity=0.626 Sum_probs=72.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|..+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999765
No 29
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.1e-16 Score=141.22 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=72.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCee-cCCCCCcccccccCCCEEEEEecC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKV-LKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKv-LkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
.-|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 469999999999999999999999999999999999999999999999999 999999999999999999999863
No 30
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.67 E-value=1.6e-16 Score=141.98 Aligned_cols=88 Identities=36% Similarity=0.567 Sum_probs=74.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPS 103 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~f 103 (958)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+.+..++.+.|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 048474 104 SDASSGET 111 (958)
Q Consensus 104 vKtssgsT 111 (958)
.++..+..
T Consensus 81 ~~~v~~~~ 88 (98)
T 1yx5_B 81 SSSVDKLA 88 (98)
T ss_dssp --------
T ss_pred cccCCCch
Confidence 88877643
No 31
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=140.51 Aligned_cols=80 Identities=26% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEECCeecCCCCCcccc--cccCCCEEEEEe
Q 048474 21 DAIVEINVKTLESQ--VYSFQVDKNIPVTLFKEKIANDI--GVPVGQQRLIFRGKVLKDEHLLSEY--HVENGHTLHLVI 94 (958)
Q Consensus 21 ~etMqI~VKTLdGK--T~TLeVdpsdTV~dLKeKIaekt--GIPpeqQRLIF~GKvLkDdkTLSDY--GIkDGSTIHLVl 94 (958)
+..|+|+||+++++ +++|+|++++||.+||++|++++ ++|+++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45799999999988 67777889999999999999999 9999999999999999999999999 999999999999
Q ss_pred cCCCCC
Q 048474 95 RQPAQS 100 (958)
Q Consensus 95 Rlp~~~ 100 (958)
+.+++.
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 32
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4.2e-16 Score=146.69 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEECCeecCCCCCccc
Q 048474 10 SSTGNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIAN------DIGV--PVGQQRLIFRGKVLKDEHLLSE 81 (958)
Q Consensus 10 SSss~~~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIae------ktGI--PpeqQRLIF~GKvLkDdkTLSD 81 (958)
++++......+.+.|+|+||+++|++++|+|++++||.+||++|++ +.++ ++++|||||.||+|+|++||++
T Consensus 3 ~~~~~~~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~ 82 (116)
T 1wgh_A 3 SGSSGMSSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 82 (116)
T ss_dssp CCCCCCCCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTT
T ss_pred CccccccCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 4555666677788999999999999999999999999999999999 5564 6999999999999999999999
Q ss_pred ccccCC--CEEEEEecCCCC
Q 048474 82 YHVENG--HTLHLVIRQPAQ 99 (958)
Q Consensus 82 YGIkDG--STIHLVlRlp~~ 99 (958)
|+|+.+ .+|||++|....
T Consensus 83 y~I~~~~~~tlhLvlr~~~~ 102 (116)
T 1wgh_A 83 LKLPFGKTTVMHLVARETLP 102 (116)
T ss_dssp TTCCSSCEEEEEEEECSSCS
T ss_pred cCCCCCCceEEEEEccCCCC
Confidence 999766 689999987643
No 33
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=140.15 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=72.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
..|+|+||+++|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999977654
No 34
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=3e-16 Score=139.46 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=72.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCC-CCcccccccCCCEEEEEecCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDE-HLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDd-kTLSDYGIkDGSTIHLVlRlp~ 98 (958)
++..|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|++|+|++|++|||+++.+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 45679999999999999999999999999999999998 8999999999999999 9999999999999999998765
Q ss_pred CC
Q 048474 99 QS 100 (958)
Q Consensus 99 ~~ 100 (958)
..
T Consensus 81 ~~ 82 (95)
T 1wia_A 81 AA 82 (95)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.66 E-value=1.9e-16 Score=145.93 Aligned_cols=77 Identities=39% Similarity=0.604 Sum_probs=74.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+++
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999875
No 36
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.8e-17 Score=149.89 Aligned_cols=106 Identities=29% Similarity=0.389 Sum_probs=92.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQ 101 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q 101 (958)
..++|+||+++|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||+++++++.+
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCce
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 048474 102 PSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGT 142 (958)
Q Consensus 102 ~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt 142 (958)
.+++.... -..+.+.+.|.++++|+.
T Consensus 88 ~~~~~~~~---------------~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 88 GGAADEEE---------------LIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CSSCSSSH---------------HHHHHHHSSSHHHHHGGG
T ss_pred eecccccc---------------ccCceEEEEeccccccCC
Confidence 87653211 122346688888888764
No 37
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=4.3e-16 Score=139.91 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=74.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCC-CCcccccccCCCEEEEEecCCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDE-HLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDd-kTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
...|+|+||++++ +++++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|+++++|||++|.+++
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4579999999987 899999999999999999999999999999999999999999 99999999999999999998765
Q ss_pred C
Q 048474 100 S 100 (958)
Q Consensus 100 ~ 100 (958)
.
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=7e-16 Score=137.80 Aligned_cols=75 Identities=31% Similarity=0.631 Sum_probs=72.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIAND---IGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaek---tGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+++|++++++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 799999999999999999999999999999999 789999999999999999999999999999999999998653
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.65 E-value=2.8e-16 Score=143.47 Aligned_cols=77 Identities=21% Similarity=0.451 Sum_probs=71.4
Q ss_pred CCcEEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEECCeecCCCCCcccccc-cCCCEEEEEecC
Q 048474 21 DAIVEINVKTLESQVYSF--QVDKNIPVTLFKEKI-ANDIGVPVGQQRLIFRGKVLKDEHLLSEYHV-ENGHTLHLVIRQ 96 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TL--eVdpsdTV~dLKeKI-aektGIPpeqQRLIF~GKvLkDdkTLSDYGI-kDGSTIHLVlRl 96 (958)
..+|+|+||+++|++|++ +|++++||.+||++| +++.|+|+++|||||+||+|+|+++|++|+| ++|++|||++++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 467999999999998777 556999999999999 8889999999999999999999999999999 999999999986
Q ss_pred C
Q 048474 97 P 97 (958)
Q Consensus 97 p 97 (958)
|
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.4e-16 Score=140.20 Aligned_cols=81 Identities=32% Similarity=0.509 Sum_probs=75.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 19 SSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..+..|+|+||+++|+ ++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|.++
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 3457899999999886 799999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 048474 99 QS 100 (958)
Q Consensus 99 ~~ 100 (958)
.+
T Consensus 97 ~p 98 (100)
T 1yqb_A 97 RA 98 (100)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.2e-16 Score=137.46 Aligned_cols=77 Identities=35% Similarity=0.600 Sum_probs=70.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++|.+++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999998754
No 42
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.4e-16 Score=141.01 Aligned_cols=75 Identities=21% Similarity=0.470 Sum_probs=70.7
Q ss_pred cEEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEECCeecCCCCCcccccc-cCCCEEEEEecCC
Q 048474 23 IVEINVKTLESQVYSFQVD--KNIPVTLFKEKI-ANDIGVPVGQQRLIFRGKVLKDEHLLSEYHV-ENGHTLHLVIRQP 97 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVd--psdTV~dLKeKI-aektGIPpeqQRLIF~GKvLkDdkTLSDYGI-kDGSTIHLVlRlp 97 (958)
+|+|+||+++|++++|+|+ +++||.+||++| +++.|+|+++|||||+||+|+|+++|++|+| .++++|+|+++..
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 4899999999999999866 999999999999 9999999999999999999999999999999 7999999998753
No 43
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.63 E-value=1.1e-15 Score=129.07 Aligned_cols=72 Identities=39% Similarity=0.735 Sum_probs=69.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
|+|+||+ +|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999764
No 44
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=138.39 Aligned_cols=79 Identities=37% Similarity=0.533 Sum_probs=74.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
....|+|+||.. |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+++.+..
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 456899999998 8999999999999999999999999999999999999999999999999999999999999987654
No 45
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=2.5e-15 Score=141.87 Aligned_cols=79 Identities=37% Similarity=0.533 Sum_probs=72.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
+.+|+|+||++ +++++|+|++++||.+||++|++++++++++|||+|+||.|+|+++|++|+|++|++|||+++..++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46899999999 99999999999999999999999999999999999999999999999999999999999999987554
No 46
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=6e-16 Score=138.16 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=71.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
....|+|+||+ |++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.+
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 34579999998 899999999999999999999999999999999999999999999999999999999999999875
No 47
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=2.1e-15 Score=136.70 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=73.4
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCC-CCcccccccCCCEEEEEecC
Q 048474 22 AIVEINVKTLES----QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDE-HLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 22 etMqI~VKTLdG----KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDd-kTLSDYGIkDGSTIHLVlRl 96 (958)
..|+|+||++++ ++++++|++++||.+||++|++++++|+++|||+|+||.|+|+ ++|++|+|++|++|||+.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 469999999754 7999999999999999999999999999999999999999988 69999999999999999987
Q ss_pred CCCCC
Q 048474 97 PAQSQ 101 (958)
Q Consensus 97 p~~~q 101 (958)
++.+.
T Consensus 86 ~gg~~ 90 (102)
T 1v5o_A 86 NVGLR 90 (102)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 66543
No 48
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=7.3e-16 Score=142.83 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=73.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEECCeecC-CCCCcccccc
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV---------------GQQRLIFRGKVLK-DEHLLSEYHV 84 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp---------------eqQRLIF~GKvLk-DdkTLSDYGI 84 (958)
...|+|+||+++|++++|+|++++||.+||++|++++++|+ ++|||||+||+|+ |+++|++|+|
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 34699999999999999999999999999999999999887 4679999999996 5699999999
Q ss_pred cCCCEEEEEecCCCCC
Q 048474 85 ENGHTLHLVIRQPAQS 100 (958)
Q Consensus 85 kDGSTIHLVlRlp~~~ 100 (958)
++|++|||+.++++..
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999987663
No 49
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.40 E-value=4.6e-17 Score=137.74 Aligned_cols=75 Identities=28% Similarity=0.428 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 50
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.61 E-value=1.8e-15 Score=149.29 Aligned_cols=84 Identities=36% Similarity=0.545 Sum_probs=77.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQPS 103 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q~f 103 (958)
|+|+||+++|++++++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|.+++....
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cCCC
Q 048474 104 SDAS 107 (958)
Q Consensus 104 vKts 107 (958)
++.+
T Consensus 81 vkfs 84 (169)
T 3l0w_B 81 IKFV 84 (169)
T ss_dssp EEEE
T ss_pred cccc
Confidence 6654
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.60 E-value=2.2e-15 Score=144.26 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
...|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|++++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999998765
No 52
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.59 E-value=2.2e-15 Score=152.03 Aligned_cols=84 Identities=37% Similarity=0.521 Sum_probs=81.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQ 101 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q 101 (958)
-.|+|+||+++|++++|+|++++||.+||++|++++++|+++|||+|+||+|+|+++|++|+|+++++|||++|+.++..
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~ 183 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ 183 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcC
Q 048474 102 PSSD 105 (958)
Q Consensus 102 ~fvK 105 (958)
.|+|
T Consensus 184 ~fvk 187 (189)
T 3q3f_A 184 TFTK 187 (189)
T ss_dssp CCCC
T ss_pred ceEe
Confidence 8876
No 53
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.9e-15 Score=136.13 Aligned_cols=77 Identities=39% Similarity=0.604 Sum_probs=74.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.+
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999865
No 54
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=5.7e-15 Score=135.12 Aligned_cols=78 Identities=24% Similarity=0.388 Sum_probs=71.9
Q ss_pred CcEEEEEEeCCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEECCeecCCCCCcccccccC
Q 048474 22 AIVEINVKTLES---QVYSFQVD--------K-NIPVTLFKEKIANDI--GVPVGQ-QRLIFRGKVLKDEHLLSEYHVEN 86 (958)
Q Consensus 22 etMqI~VKTLdG---KT~TLeVd--------p-sdTV~dLKeKIaekt--GIPpeq-QRLIF~GKvLkDdkTLSDYGIkD 86 (958)
..|+|+||+.++ ++++|+|+ + ++||.+||++|++++ ++|+++ |||+|+||.|+|+++|++|+|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 569999999998 89999954 4 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEecCCCC
Q 048474 87 GHTLHLVIRQPAQ 99 (958)
Q Consensus 87 GSTIHLVlRlp~~ 99 (958)
+++|||+++.+..
T Consensus 91 g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 91 GSTVHVLRKSWSG 103 (107)
T ss_dssp TCEEEEEESSCCS
T ss_pred CCEEEEEeCCCCC
Confidence 9999999987643
No 55
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.57 E-value=3.9e-15 Score=136.59 Aligned_cols=79 Identities=30% Similarity=0.428 Sum_probs=75.3
Q ss_pred CCcEEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 21 DAIVEINVKTL---ESQVYSFQVDK-NIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 21 ~etMqI~VKTL---dGKT~TLeVdp-sdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
...|+|+||++ +|++++++|++ ++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++|.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35799999999 89999999998 999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 048474 97 PAQ 99 (958)
Q Consensus 97 p~~ 99 (958)
.++
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 56
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=137.63 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=66.0
Q ss_pred CCCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh-CCC-CCCeEEEECCeecCCCCCcccc--cccCCCEEEE
Q 048474 19 SSDAIVEINVKTLESQ--VYSFQVDKNIPVTLFKEKIANDI-GVP-VGQQRLIFRGKVLKDEHLLSEY--HVENGHTLHL 92 (958)
Q Consensus 19 ~s~etMqI~VKTLdGK--T~TLeVdpsdTV~dLKeKIaekt-GIP-peqQRLIF~GKvLkDdkTLSDY--GIkDGSTIHL 92 (958)
..+..|+|+||+++++ +++|+|++++||.+||++|++++ |+| +++|||||+||+|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456799999999998 67999999999999999999974 555 5999999999999999999999 9999999998
Q ss_pred E
Q 048474 93 V 93 (958)
Q Consensus 93 V 93 (958)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=4.6e-15 Score=133.27 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 18 KSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 18 e~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
......|+|+|| +.++++.|+|++++||.+||++|++++++|+++|||+|+||.| |+.+|++|+|+++++|||+.+.
T Consensus 12 ~~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 12 GVGKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred CCCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 345568999999 5789999999999999999999999999999999999999999 5569999999999999998764
No 58
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=6.1e-15 Score=135.90 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=66.0
Q ss_pred EEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 25 EINVKTLE----SQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 25 qI~VKTLd----GKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
.|.|+..+ +++++|+|++++||.+||++|++++|+|+++|||||+||+|+|++||++|+|++|++| +++++++..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 45555555 7799999999999999999999999999999999999999999999999999999999 555655443
No 59
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=1.7e-14 Score=127.56 Aligned_cols=76 Identities=26% Similarity=0.416 Sum_probs=70.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEECCeecCC-CCCcccccccCCCEEEEEec
Q 048474 22 AIVEINVKTLESQVYSFQVDKN-----IPVTLFKEKIANDIGVPVGQQRLIFRGKVLKD-EHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdps-----dTV~dLKeKIaektGIPpeqQRLIF~GKvLkD-dkTLSDYGIkDGSTIHLVlR 95 (958)
.+|+|+||+ .++++.++|+++ +||.+||++|++++++|+++|||+|+||.|+| +++|++|+|+++++|||+.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 579999998 589999999985 99999999999999999999999999999998 56899999999999999986
Q ss_pred CCC
Q 048474 96 QPA 98 (958)
Q Consensus 96 lp~ 98 (958)
.+.
T Consensus 85 ~~~ 87 (92)
T 1wxv_A 85 KNS 87 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 60
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.55 E-value=7.4e-15 Score=139.73 Aligned_cols=79 Identities=16% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEECCeecCCCCCcccccccCCC--EE
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIAN------DIGV--PVGQQRLIFRGKVLKDEHLLSEYHVENGH--TL 90 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIae------ktGI--PpeqQRLIF~GKvLkDdkTLSDYGIkDGS--TI 90 (958)
...|+|+||+++|++++|+|++++||.+||++|++ +.++ ++++|||||.||+|+|++||++|+|++++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 34699999999999999999999999999999999 6777 48999999999999999999999999766 79
Q ss_pred EEEecCCCC
Q 048474 91 HLVIRQPAQ 99 (958)
Q Consensus 91 HLVlRlp~~ 99 (958)
||++|....
T Consensus 95 hlv~r~~~~ 103 (125)
T 2gow_A 95 HLVARETLP 103 (125)
T ss_dssp EEEECSCCS
T ss_pred EEEecCCCC
Confidence 999988643
No 61
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=1.3e-14 Score=130.99 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 21 DAIVEINVKTLESQVY-SFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~-TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
..+|+|+||. .|++| .|+|++++||.+||++|++++|+|+++|||+|+||.|+|+ +|++|+|+++++|||+....
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 3579999995 78999 6999999999999999999999999999999999999999 99999999999999998654
No 62
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.55 E-value=1.3e-14 Score=138.63 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHH-----HHhCCCC--CCeEEEECCeecCCCCCcccccccCC-----
Q 048474 21 DAIVEINVKTLESQVY-SFQVDKNIPVTLFKEKIA-----NDIGVPV--GQQRLIFRGKVLKDEHLLSEYHVENG----- 87 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~-TLeVdpsdTV~dLKeKIa-----ektGIPp--eqQRLIF~GKvLkDdkTLSDYGIkDG----- 87 (958)
.+.|+|+||+++|+++ .+++++++||.+||++|+ ++.++|+ ++|||||.||+|+|++||++|+|+++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4789999999999888 799999999999999995 4567886 89999999999999999999999998
Q ss_pred -CEEEEEecCCCC
Q 048474 88 -HTLHLVIRQPAQ 99 (958)
Q Consensus 88 -STIHLVlRlp~~ 99 (958)
.++||+++++..
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 789999998754
No 63
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.54 E-value=1.1e-14 Score=129.18 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=71.2
Q ss_pred CCcEEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---ECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 21 DAIVEINVKTLESQVYSF-QVDKNIPVTLFKEKIANDIGVPVGQQRLI---FRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TL-eVdpsdTV~dLKeKIaektGIPpeqQRLI---F~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
..+|+|+||. .|++|+| +|++++||.+||++|++++++|+++|||+ |+||.|+|+++|++|+|+++++|||+...
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 3579999996 7899999 99999999999999999999999999999 99999999999999999999999999764
Q ss_pred C
Q 048474 97 P 97 (958)
Q Consensus 97 p 97 (958)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 64
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-14 Score=134.15 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=78.7
Q ss_pred CCcEEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 21 DAIVEINVK-TLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 21 ~etMqI~VK-TLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
+..|.|+|| ...++.++++++++.||.+||++|++++++|+++|||||+||+|+|++||.+|||++|.+|||+++...+
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 456888888 5578899999999999999999999999999999999999999999999999999999999999997665
Q ss_pred CCCCcCCCCC
Q 048474 100 SQPSSDASSG 109 (958)
Q Consensus 100 ~q~fvKtssg 109 (958)
-.-.++...+
T Consensus 93 ~~~p~~~~~~ 102 (118)
T 2daf_A 93 DLYPVRRIDG 102 (118)
T ss_dssp TTSCCCCCCS
T ss_pred ccCcceeccC
Confidence 5555555444
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.54 E-value=9.4e-15 Score=138.34 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=68.9
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccC-------CCEEEEEec
Q 048474 24 VEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVEN-------GHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkD-------GSTIHLVlR 95 (958)
|.|||+...++ ++.++|++++||.+||++|+.++|+|+++|||||.||+|+|++||++|+|++ +++|||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56777766666 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCC
Q 048474 96 QPA 98 (958)
Q Consensus 96 lp~ 98 (958)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 743
No 66
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.54 E-value=9.3e-15 Score=138.28 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=66.0
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCccccccc-------CCCEEEEEec
Q 048474 24 VEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVE-------NGHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIk-------DGSTIHLVlR 95 (958)
|+++|+.+.++ +++|+|++++||.+||++|+.++|||+++|||||+||+|+|++||++|+|+ ++++|||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 44555555555 699999999999999999999999999999999999999999999999999 7999999999
Q ss_pred C
Q 048474 96 Q 96 (958)
Q Consensus 96 l 96 (958)
.
T Consensus 81 ~ 81 (118)
T 2fnj_B 81 A 81 (118)
T ss_dssp S
T ss_pred C
Confidence 4
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=141.08 Aligned_cols=77 Identities=39% Similarity=0.595 Sum_probs=71.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..|+|+||+++|++++++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999865
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.53 E-value=3.6e-14 Score=133.02 Aligned_cols=77 Identities=39% Similarity=0.595 Sum_probs=74.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999875
No 69
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.52 E-value=2.9e-14 Score=131.70 Aligned_cols=79 Identities=28% Similarity=0.497 Sum_probs=73.9
Q ss_pred CCcEEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEE
Q 048474 21 DAIVEINVKTL----------ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTL 90 (958)
Q Consensus 21 ~etMqI~VKTL----------dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTI 90 (958)
+..|+|+|+.. +|++++|+|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35799999986 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 048474 91 HLVIRQPAQ 99 (958)
Q Consensus 91 HLVlRlp~~ 99 (958)
||++|.+++
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999998765
No 70
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.2e-15 Score=135.26 Aligned_cols=74 Identities=38% Similarity=0.704 Sum_probs=69.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
-.|+|+||+ +|++++++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 27 m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp --CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 358899997 89999999999999999999999999999999999999999999999999999999999999864
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.51 E-value=4.1e-14 Score=131.49 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=69.9
Q ss_pred CcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccc-cCCCEEEEEecC
Q 048474 22 AIVEINVKTLES--QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHV-ENGHTLHLVIRQ 96 (958)
Q Consensus 22 etMqI~VKTLdG--KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGI-kDGSTIHLVlRl 96 (958)
-.|+|+|+...+ .+++|+|++++||.+||++|++++|+|+++|||+|+||.|+|++||.+||| ++|++|||++..
T Consensus 23 i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 23 IRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 458899999875 689999999999999999999999999999999999999999999999999 599999999864
No 72
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.50 E-value=1.5e-15 Score=142.95 Aligned_cols=77 Identities=39% Similarity=0.604 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
|+|+||+++|++++|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||+++..++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999987664
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.50 E-value=5.6e-14 Score=123.75 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=67.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
.++.+ ++.++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+.+
T Consensus 11 ~~~~~-~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIKL-TVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEEE-EEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEEE-EEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 34555 45578999999999999999999999999999999999999999999999999999999999999875
No 74
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.49 E-value=6.5e-14 Score=153.52 Aligned_cols=80 Identities=29% Similarity=0.539 Sum_probs=72.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEECCeecCCCCCcccccccCCCEE-EEEecC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIAN---DIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTL-HLVIRQ 96 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIae---ktGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTI-HLVlRl 96 (958)
+..|+|+||+++|++|+|+|++++||.+||++|++ +.+|++++|||||+||+|+|+++|++|+|+++++| ||+.|.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 45799999999999999999999999999999999 56799999999999999999999999999999998 777776
Q ss_pred CCCC
Q 048474 97 PAQS 100 (958)
Q Consensus 97 p~~~ 100 (958)
+...
T Consensus 85 ~~~~ 88 (368)
T 1oqy_A 85 KAGQ 88 (368)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 5443
No 75
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.44 E-value=1.3e-13 Score=123.00 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=66.5
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-------CCeecCCCCCcccccccCCCEEEEE
Q 048474 23 IVEINVKT--LESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF-------RGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 23 tMqI~VKT--LdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF-------~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
.++|.|.. ...+.+++++++++||.+||++|+.++|+|+++|||+| .|+.|+|+++|++|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 45666654 35677899999999999999999999999999999997 4889999999999999999999999
Q ss_pred ecCC
Q 048474 94 IRQP 97 (958)
Q Consensus 94 lRlp 97 (958)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 8755
No 76
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.44 E-value=8.5e-15 Score=143.11 Aligned_cols=77 Identities=39% Similarity=0.614 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQS 100 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~ 100 (958)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|+++++|||++|+.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988764
No 77
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=126.34 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=68.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE--CCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF--RGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF--~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
.|.++++.+.|++++|+|++++||.+||++|++++|||+++|||+| .|+ |+|+++|++|+|++|++|||+++.-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 5888888899999999999999999999999999999999999997 566 9999999999999999999988643
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.41 E-value=6.6e-13 Score=120.47 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=67.1
Q ss_pred CCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEC--Ce---ec-CCCCCcccccccCCCEEE
Q 048474 20 SDAIVEINVKTLES--QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFR--GK---VL-KDEHLLSEYHVENGHTLH 91 (958)
Q Consensus 20 s~etMqI~VKTLdG--KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~--GK---vL-kDdkTLSDYGIkDGSTIH 91 (958)
++..|.|+|+...+ +.++++|++++||.+||++|+.++|+|+++|||+|. |+ .| +|+++|++|+|++|++||
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 45689999998766 489999999999999999999999999999999998 55 44 899999999999999999
Q ss_pred EE
Q 048474 92 LV 93 (958)
Q Consensus 92 LV 93 (958)
|+
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=120.72 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=65.3
Q ss_pred CcEEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCeEEEEC--CeecCCCCCcccccccCCCEEEE
Q 048474 22 AIVEINVKTLESQVY--SF-QVDKNIPVTLFKEKIAND-IGVPVGQQRLIFR--GKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 22 etMqI~VKTLdGKT~--TL-eVdpsdTV~dLKeKIaek-tGIPpeqQRLIF~--GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
..|+|+||++.|+++ +| +|++++||.+||++|+++ .++++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 359999999998775 58 999999999999999995 8999999999976 99999999999999999999876
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.39 E-value=7.6e-13 Score=142.27 Aligned_cols=78 Identities=38% Similarity=0.589 Sum_probs=72.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
....|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||+|+|+++|++|+|+++++|||++|++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999863
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.36 E-value=1.5e-12 Score=118.69 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=67.1
Q ss_pred CCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC---ee----cCCCCCcccccccCCCEEE
Q 048474 21 DAIVEINVKTLES--QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG---KV----LKDEHLLSEYHVENGHTLH 91 (958)
Q Consensus 21 ~etMqI~VKTLdG--KT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G---Kv----LkDdkTLSDYGIkDGSTIH 91 (958)
+..+.|+|+.... +.++++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|++|+|++|++||
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 4679999997554 4799999999999999999999999999999999988 33 4899999999999999999
Q ss_pred EEec
Q 048474 92 LVIR 95 (958)
Q Consensus 92 LVlR 95 (958)
|+-.
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9864
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.35 E-value=1.4e-12 Score=119.70 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=68.0
Q ss_pred CcEEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEECCe-----------e----cCCCCCccccccc
Q 048474 22 AIVEINVKTLESQVYSFQVD-KNIPVTLFKEKIANDIGVPVGQQRLIFRGK-----------V----LKDEHLLSEYHVE 85 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVd-psdTV~dLKeKIaektGIPpeqQRLIF~GK-----------v----LkDdkTLSDYGIk 85 (958)
..|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|||+|.++ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34999999999976 79999 999999999999999999999999999988 4 5889999999999
Q ss_pred CCCEEEEEecC
Q 048474 86 NGHTLHLVIRQ 96 (958)
Q Consensus 86 DGSTIHLVlRl 96 (958)
+|++|||+...
T Consensus 85 ~G~~L~l~~~~ 95 (107)
T 1wf9_A 85 HGSMVYLAYEG 95 (107)
T ss_dssp TTCEEECCCSS
T ss_pred CCCEEEEEeCC
Confidence 99999998763
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=2.4e-12 Score=116.55 Aligned_cols=79 Identities=15% Similarity=0.371 Sum_probs=75.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
.+.|+|+||+.+|+.+.++|.+++++..||++++++.+++++++||+|+|+.|.+++|+++|+++++++||+++++.++
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998766
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=2.6e-12 Score=115.13 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=66.1
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC---ee----cCCCCCcccccccCCCEEEEE
Q 048474 22 AIVEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG---KV----LKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 22 etMqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G---Kv----LkDdkTLSDYGIkDGSTIHLV 93 (958)
..|.|+|+..... .++++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|++|+|++|++|||+
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 3599999986543 689999999999999999999999999999999986 43 589999999999999999998
Q ss_pred ec
Q 048474 94 IR 95 (958)
Q Consensus 94 lR 95 (958)
-.
T Consensus 86 d~ 87 (95)
T 1v6e_A 86 DH 87 (95)
T ss_dssp CC
T ss_pred EC
Confidence 64
No 85
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.29 E-value=2.4e-13 Score=137.58 Aligned_cols=73 Identities=21% Similarity=0.383 Sum_probs=0.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCCCC
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQSQ 101 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~~q 101 (958)
|+|+||+++|++++|+|++++||.+||++|++++|||+++|||||.|++|+|+++|+ ++++|||++|+.++..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999 8999999999876543
No 86
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.25 E-value=2.2e-11 Score=109.93 Aligned_cols=78 Identities=15% Similarity=0.380 Sum_probs=73.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
...|.|+|+..+|+.+.|+|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++||+++++.+
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999998754
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=2.6e-11 Score=109.44 Aligned_cols=78 Identities=15% Similarity=0.367 Sum_probs=75.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
+.|+|+||+.+|+.+.++|.+++++..||++++++.|++++++||+|+|+.|.+++|+++|++++|++|++++++.++
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999988765
No 88
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.24 E-value=2.1e-11 Score=114.34 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=67.4
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC---ee----cCCCCCcccccccCCCEEEEE
Q 048474 22 AIVEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG---KV----LKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 22 etMqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G---Kv----LkDdkTLSDYGIkDGSTIHLV 93 (958)
..|.|+|+..... .++++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|.+|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 3699999986553 689999999999999999999999999999999987 42 489999999999999999999
Q ss_pred ecCC
Q 048474 94 IRQP 97 (958)
Q Consensus 94 lRlp 97 (958)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 7543
No 89
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.23 E-value=3.4e-11 Score=112.49 Aligned_cols=84 Identities=14% Similarity=0.302 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 17 GKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 17 ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
.+.+...|+|+|+..+|+.+.|+|.+++++..||++++++.+++++++||+|.|+.|.+++|+++|+++++++|++++.+
T Consensus 20 ~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 20 CKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred CCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 048474 97 PAQS 100 (958)
Q Consensus 97 p~~~ 100 (958)
.++.
T Consensus 100 ~Gg~ 103 (110)
T 2k8h_A 100 TGGL 103 (110)
T ss_dssp CCC-
T ss_pred cCcc
Confidence 7643
No 90
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.22 E-value=6.3e-11 Score=109.51 Aligned_cols=81 Identities=15% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
....|+|+|+..+|+.+.|+|.+++++..||++++++.+++++++||+|.|+.|.+++|+.+|+++++++||+++++.++
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred C
Q 048474 100 S 100 (958)
Q Consensus 100 ~ 100 (958)
.
T Consensus 101 ~ 101 (104)
T 1wz0_A 101 P 101 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.19 E-value=6.2e-11 Score=101.71 Aligned_cols=71 Identities=15% Similarity=0.396 Sum_probs=69.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
|+|+||..+|+.+.++|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++|++++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999873
No 92
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.18 E-value=1.4e-10 Score=107.89 Aligned_cols=80 Identities=15% Similarity=0.295 Sum_probs=74.2
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 18 KSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 18 e~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
......|+|+|++ +|+.+.|+|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|+++++++|++++++.
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 3455789999999 999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 048474 98 A 98 (958)
Q Consensus 98 ~ 98 (958)
+
T Consensus 105 G 105 (106)
T 2eke_C 105 G 105 (106)
T ss_dssp -
T ss_pred c
Confidence 4
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.17 E-value=1.4e-10 Score=101.57 Aligned_cols=73 Identities=14% Similarity=0.332 Sum_probs=70.1
Q ss_pred CCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 21 DAIVEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 21 ~etMqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
.+.|+|+|+..+|+ .+.++|.+++++..||++++++.|++++++||+|.|+.|.+++|+++|++++|++||++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 46799999999996 89999999999999999999999999999999999999999999999999999999986
No 94
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.16 E-value=2.2e-11 Score=131.23 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=68.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---ECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI---FRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI---F~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
.+.|+|+||. +|++|+|+|++++||.+||++|++++|||+++|||+ |+||+|+|+.+|++|+|++|++|||+....
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 3579999994 899999999999999999999999999999999999 899999999999999999999999996543
No 95
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.15 E-value=2.8e-11 Score=106.47 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=64.3
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEECC--eecC---CCCCcccccccCCCEEEEEecC
Q 048474 24 VEINVKTLESQVYSFQ-VDKNIPVTLFKEKIANDIGVPVGQQRLIFRG--KVLK---DEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 24 MqI~VKTLdGKT~TLe-VdpsdTV~dLKeKIaektGIPpeqQRLIF~G--KvLk---DdkTLSDYGIkDGSTIHLVlRl 96 (958)
|+|+||+.+|+. .++ |++++||.+||++|++++++++++|||+|.+ |.|+ |+++|++|||.+|++|||....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 789999999965 477 9999999999999999999999999999974 8774 6889999999999999997653
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.01 E-value=8.3e-10 Score=99.06 Aligned_cols=76 Identities=26% Similarity=0.380 Sum_probs=66.4
Q ss_pred CcEEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC------e-ec-CCCCCcccccccCCCEE
Q 048474 22 AIVEINVKT---LESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG------K-VL-KDEHLLSEYHVENGHTL 90 (958)
Q Consensus 22 etMqI~VKT---LdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G------K-vL-kDdkTLSDYGIkDGSTI 90 (958)
..++|+|++ .+++.+++++.+++||.+||.+|+..+|+|+.+|||+|.+ . .| +|.++|.+|+|.+|++|
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 468998886 4688999999999999999999999999999999999873 2 25 67889999999999999
Q ss_pred EEEecCC
Q 048474 91 HLVIRQP 97 (958)
Q Consensus 91 HLVlRlp 97 (958)
|+..+.+
T Consensus 88 ~V~d~~p 94 (97)
T 1wjn_A 88 LVRWSGP 94 (97)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9987543
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=4.3e-09 Score=99.39 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=73.1
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
+...|+|+|+..+|+.+.|+|.+++++..|++.++++.|+++..+||+|.|+.|.+++|.+++++++|++|++++.+.
T Consensus 37 ~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 37 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999998753
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.1e-08 Score=102.53 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=79.1
Q ss_pred CCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 14 NVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 14 ~~~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
..+...+...|+|+|+ .+|+.+.++|.+++++..||+.++++.|+++.++||+|+|+.|.+++|.++|++++|++|+++
T Consensus 20 ~kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~ 98 (200)
T 3pge_A 20 VKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 98 (200)
T ss_dssp -----CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred cCCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 3333445678999998 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcCC
Q 048474 94 IRQPAQSQPSSDA 106 (958)
Q Consensus 94 lRlp~~~q~fvKt 106 (958)
+.+.++....++-
T Consensus 99 ~~q~gg~kd~v~F 111 (200)
T 3pge_A 99 REQIGGGGETIKF 111 (200)
T ss_dssp ECCSCCC-CCEEE
T ss_pred eccCcCcCceEEE
Confidence 9998776554444
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.2e-08 Score=102.19 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=75.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCC
Q 048474 19 SSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~ 98 (958)
.+.+.|+|+|+ .+|+.+.|+|.+++++..|++.++++.|+++..+||+|+|+.|.+++|.++|++++|++|++++.+.+
T Consensus 53 dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 45678999998 49999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 048474 99 QSQ 101 (958)
Q Consensus 99 ~~q 101 (958)
+..
T Consensus 132 G~~ 134 (207)
T 3tix_A 132 GLP 134 (207)
T ss_dssp TGG
T ss_pred CCc
Confidence 753
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.40 E-value=3.7e-08 Score=101.66 Aligned_cols=87 Identities=14% Similarity=0.230 Sum_probs=1.1
Q ss_pred CCCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEE
Q 048474 13 GNVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 13 s~~~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
...+...+.+.|+|+| ..+|+.+.|+|.+++++..||+.++++.|++++.+|++|+|+.|.+++|.+++++++|++|++
T Consensus 11 ~~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 11 EVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEE
Confidence 3445556678899999 779999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 048474 93 VIRQPAQS 100 (958)
Q Consensus 93 VlRlp~~~ 100 (958)
+..+.++.
T Consensus 90 ~leQ~GG~ 97 (227)
T 3v7o_A 90 HREQIGGL 97 (227)
T ss_dssp ------CC
T ss_pred EecccCCc
Confidence 99887764
No 101
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.26 E-value=4.5e-06 Score=76.72 Aligned_cols=76 Identities=13% Similarity=0.324 Sum_probs=70.5
Q ss_pred CCCCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 18 KSSDAIVEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 18 e~s~etMqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
....+.|.|+|+..+++ .+.+.|.+++++..|.+..+++.++++...||+|.|+.|.++.|..++++++|++|.++
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34457899999999985 89999999999999999999999999999999999999999999999999999999875
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.09 E-value=9.7e-06 Score=82.55 Aligned_cols=86 Identities=15% Similarity=0.263 Sum_probs=75.4
Q ss_pred CCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 14 NVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 14 ~~~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
..+.--+.+.|.|+|+. +++.+.++|..++++..||+.++++.|++++++||+|.|+.+.+++|..++.++++++|+++
T Consensus 12 ~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~ 90 (209)
T 3uf8_A 12 VKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (209)
T ss_dssp ------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred ccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhh
Confidence 33444456789999998 88889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 048474 94 IRQPAQS 100 (958)
Q Consensus 94 lRlp~~~ 100 (958)
.++.+..
T Consensus 91 ~eq~Gg~ 97 (209)
T 3uf8_A 91 REQIGGS 97 (209)
T ss_dssp CSCTTCC
T ss_pred ccccccc
Confidence 9887654
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.09 E-value=1.4e-06 Score=76.72 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=60.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCee---c--CCCCCcccccccCCCEEEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKV---L--KDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKv---L--kDdkTLSDYGIkDGSTIHLV 93 (958)
+.|.|.||..+| ++.|+|++++|+.+||++|+++++++++.|.|.+.-.. | .++.+|+++||+.|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358999999876 77788999999999999999999999998887665443 3 47889999999999999874
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.98 E-value=3.3e-05 Score=69.20 Aligned_cols=73 Identities=12% Similarity=0.307 Sum_probs=68.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVG-QQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpe-qQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+-|.+.++......+.++|.++.+|.+|-+..+++.+|+++ ..||.|.|..|+.+.++.+|.+++++.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45778888888888999999999999999999999999999 89999999999999999999999999999876
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.97 E-value=1e-06 Score=96.90 Aligned_cols=87 Identities=14% Similarity=0.252 Sum_probs=1.2
Q ss_pred CCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 14 NVSGKSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 14 ~~~ae~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
......+.+.|.|+|+. +|+.+.++|..++++..||+.++++.|++++.+|++|+|+.|.+++|.+++++++|++|+++
T Consensus 12 ~~~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~ 90 (360)
T 3ix6_A 12 VKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhh
Confidence 34444566789999997 78889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 048474 94 IRQPAQSQ 101 (958)
Q Consensus 94 lRlp~~~q 101 (958)
.++.+++.
T Consensus 91 ~~Q~g~~~ 98 (360)
T 3ix6_A 91 REQIGGMR 98 (360)
T ss_dssp ------CH
T ss_pred hccCchHH
Confidence 99988874
No 106
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.81 E-value=0.00013 Score=67.21 Aligned_cols=75 Identities=11% Similarity=0.231 Sum_probs=70.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
...|.|+|+. +|....|.|..++..+.|.+.++++.|+.+...|++|+|..+.++.|-.+++++++++|.+++..
T Consensus 19 ~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 19 PRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 4569999994 78999999999999999999999999999999999999999999999999999999999998753
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.79 E-value=3e-06 Score=92.52 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCCCC
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp~~ 99 (958)
+...|.|+|+. +++.+.|+|..+++++.||+.++++.|+++.++|++|+|+.|.+++|.+++++++|++|+++..+.++
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 44678899987 78888999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCC
Q 048474 100 SQPS 103 (958)
Q Consensus 100 ~q~f 103 (958)
....
T Consensus 106 ~n~~ 109 (389)
T 4da1_A 106 ENLY 109 (389)
T ss_dssp ----
T ss_pred cccc
Confidence 6543
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.62 E-value=0.00021 Score=65.68 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=52.8
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeec--CCCCCcccccc-cCCCEEEEEec
Q 048474 26 INVKTL-ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVL--KDEHLLSEYHV-ENGHTLHLVIR 95 (958)
Q Consensus 26 I~VKTL-dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvL--kDdkTLSDYGI-kDGSTIHLVlR 95 (958)
|+|=.+ ..+.+++.+++++||..||++|++++|||+++|+|+|.||.| +..+.-..|-- ....-|.|+-+
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 344334 467899999999999999999999999999999999999865 44555556633 33445655544
No 109
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.36 E-value=0.00023 Score=68.51 Aligned_cols=70 Identities=27% Similarity=0.282 Sum_probs=59.4
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 048474 25 EINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVG-------------------------------------QQRLI 67 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpe-------------------------------------qQRLI 67 (958)
.|+|+.++|+..++.|+.+.||.+++..|+.+.||+.. ++||.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999998854 44553
Q ss_pred E--CCeecCCCCCcccccccCCCEEEEEe
Q 048474 68 F--RGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 68 F--~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
. ....|+++++|.++||.++++|.|-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 3 23577889999999999999976643
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.14 E-value=0.0006 Score=61.06 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=60.8
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEECCeecCCCCCcccccccCCCEEEE
Q 048474 23 IVEINVKT--LESQVYSFQVDKNIPVTLFKEKIANDIGVPV-----GQQRLIFRGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 23 tMqI~VKT--LdGKT~TLeVdpsdTV~dLKeKIaektGIPp-----eqQRLIF~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
-|+|+|.. ..++++.|++....||++|++.+.+.++++. ...|+.-++..|.++++|++|+|.+|+.|.+
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 57888875 5789999999999999999999999998654 2356777889999999999999999999875
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.95 E-value=0.0086 Score=55.52 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeecC--C-CCCcccccccCCCEEEE
Q 048474 18 KSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVLK--D-EHLLSEYHVENGHTLHL 92 (958)
Q Consensus 18 e~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvLk--D-dkTLSDYGIkDGSTIHL 92 (958)
.......+|.||..+|+.+.-++..++||.+|++.|....+.+.....|+ |--|.|. | ++||.+.++.+..+|++
T Consensus 8 ~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v 87 (109)
T 2dzk_A 8 RDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVL 87 (109)
T ss_dssp CCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEE
Confidence 34456799999999999999999999999999999999987777778886 4567886 3 68999999999888877
Q ss_pred Eec
Q 048474 93 VIR 95 (958)
Q Consensus 93 VlR 95 (958)
...
T Consensus 88 ~~~ 90 (109)
T 2dzk_A 88 LPA 90 (109)
T ss_dssp ECC
T ss_pred EEC
Confidence 654
No 112
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.93 E-value=0.002 Score=58.95 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=69.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
-|.|+|-..+++.+++.|.++.++.++-++..+++|+.+++-.|.|++|.|+-...+.-.||.+|++|.|+.+..
T Consensus 9 ~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp -CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred ccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 468999999999999999999999999999999999999999999999999889999999999999999997654
No 113
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.59 E-value=0.0092 Score=52.40 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=63.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeec---CCCCCcccccccCCCEEEEEe
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVL---KDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvL---kDdkTLSDYGIkDGSTIHLVl 94 (958)
.+...+|.||..+|+.+.-++..++||.+|.+.|.. .+.+....+|+ |-.|.| +.++||.+.|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 346789999999999999999999999999999998 56778888998 446878 346899999999999888754
Q ss_pred c
Q 048474 95 R 95 (958)
Q Consensus 95 R 95 (958)
+
T Consensus 83 k 83 (84)
T 3qx1_A 83 K 83 (84)
T ss_dssp C
T ss_pred c
Confidence 3
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.97 E-value=0.035 Score=52.74 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=64.6
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeec--CC-CCCcccccccCCCEEEE
Q 048474 18 KSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVL--KD-EHLLSEYHVENGHTLHL 92 (958)
Q Consensus 18 e~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvL--kD-dkTLSDYGIkDGSTIHL 92 (958)
+......+|.||..+|+.+.-++..++||.+|.+.|... +.+....+|+ |-.|.| .| ++||.+.++.+..+|+|
T Consensus 38 d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv 116 (124)
T 1wj4_A 38 DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 116 (124)
T ss_dssp CCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEE
Confidence 344568999999999999999999999999999999887 7777888887 457888 33 78999999999888877
Q ss_pred Eec
Q 048474 93 VIR 95 (958)
Q Consensus 93 VlR 95 (958)
...
T Consensus 117 ~~~ 119 (124)
T 1wj4_A 117 QES 119 (124)
T ss_dssp EEC
T ss_pred EEc
Confidence 643
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.51 E-value=0.086 Score=48.71 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=62.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--ECCeecC--CCCCcccccccCCCEEEEEec
Q 048474 20 SDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI--FRGKVLK--DEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 20 s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI--F~GKvLk--DdkTLSDYGIkDGSTIHLVlR 95 (958)
.....+|.||..+|+.+.-++..++||.+|..-|..+ +..+...+|+ |-.|.|. .++||.+.|+.+..+|+|..+
T Consensus 20 ~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 20 AEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp CSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 3568999999999999999999999999999999965 5566778886 4467886 368999999999888877553
No 116
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.21 E-value=0.1 Score=47.72 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=65.4
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC---eecCCCCCcccccccCCCEEEEEec
Q 048474 19 SSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG---KVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G---KvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
-++.++++.|....-++..++|.|..++.+|--.|.++..+.++.--|...- ..|+-+++|.||||++ ++.+-.
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence 4568999999999888999999999999999999999999999998887643 5788899999999996 666554
Q ss_pred CC
Q 048474 96 QP 97 (958)
Q Consensus 96 lp 97 (958)
.+
T Consensus 83 ~~ 84 (91)
T 2daj_A 83 NR 84 (91)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 117
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.21 E-value=0.00024 Score=61.74 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=40.8
Q ss_pred cccCCCEEEEEecCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCchhHHHHH
Q 048474 83 HVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 83 GIkDGSTIHLVlRlp~~~q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
|+.++++++++++.+..++.++++..+.+ +.+.|.++++|+.||.+|+ ..|+|++.|||+|
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~------------------~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQT------------------RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp --------------CCEEEEEEEETTSCE------------------EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCE------------------EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 35567888998888888888888766533 5578999999999999997 8899999999987
Q ss_pred H
Q 048474 162 A 162 (958)
Q Consensus 162 a 162 (958)
+
T Consensus 63 ~ 63 (88)
T 4eew_A 63 Q 63 (88)
T ss_dssp T
T ss_pred C
Confidence 4
No 118
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=95.18 E-value=0.00031 Score=64.47 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=38.6
Q ss_pred EecCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 93 VIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 93 VlRlp~~~q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+-..+..+++|+|+..+. .+.+.+.|+|||+.||.+|+ ++|+||++|||+|+
T Consensus 15 ~~~~~~mIqI~Vk~~~Gk------------------k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGK------------------KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp -----CEEEEEEECTTSC------------------EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCCCceEEEEEECCCCC------------------EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 333444556666666554 36699999999999999997 99999999999873
No 119
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.76 E-value=0.15 Score=48.34 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=53.8
Q ss_pred CcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEEC----CeecCCC-----------
Q 048474 22 AIVEINVKTLE--SQVYSFQVDKNIPVTLFKEKIANDI--GVP------VGQQRLIFR----GKVLKDE----------- 76 (958)
Q Consensus 22 etMqI~VKTLd--GKT~TLeVdpsdTV~dLKeKIaekt--GIP------peqQRLIF~----GKvLkDd----------- 76 (958)
.++.|+|-..+ +..+.++|-.++||.++|+||-... ++| ++...|-+. |++|.|.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 46777776543 4568888889999999999998774 222 466777763 4567652
Q ss_pred --CCcccccccCCCEEEEEec
Q 048474 77 --HLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 77 --kTLSDYGIkDGSTIHLVlR 95 (958)
.||+.|+|.||.+|-|+-+
T Consensus 90 rLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 90 RVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCBHHHHTCCTTCEEEEEEC
T ss_pred EecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988754
No 120
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.47 E-value=0.14 Score=50.20 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=54.2
Q ss_pred CcEEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHh--CC------CCCCeEEEE----CCe-ecCCC------
Q 048474 22 AIVEINVKTLE------SQVYSFQVDKNIPVTLFKEKIANDI--GV------PVGQQRLIF----RGK-VLKDE------ 76 (958)
Q Consensus 22 etMqI~VKTLd------GKT~TLeVdpsdTV~dLKeKIaekt--GI------PpeqQRLIF----~GK-vLkDd------ 76 (958)
.+|.|+|-... ...+.++|-.+|||.++|+||-+.+ ++ .+++.-|-+ .|+ .|.|.
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~ 102 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV 102 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence 56777775542 2468889999999999999998874 23 344556655 233 36553
Q ss_pred -------CCcccccccCCCEEEEEecCC
Q 048474 77 -------HLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 77 -------kTLSDYGIkDGSTIHLVlRlp 97 (958)
.||+.|+|.+|.+|.|+-+..
T Consensus 103 ~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 103 QGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp ETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred cCCceeecchhccCCCCCCEEEEEECCC
Confidence 289999999999999987754
No 121
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.29 E-value=0.094 Score=49.86 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=59.4
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEEE--CCeecCC-CCCcccccccCCCEE
Q 048474 18 KSSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDI-GVPVGQQRLIF--RGKVLKD-EHLLSEYHVENGHTL 90 (958)
Q Consensus 18 e~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaekt-GIPpeqQRLIF--~GKvLkD-dkTLSDYGIkDGSTI 90 (958)
++.....+|.||..+|+.+.-++..++||.+|++.|.... +.......|+. -.|.|.| ++||.+.|+.+..+|
T Consensus 47 d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 47 NEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 3445678999999999999999999999999999999874 35556778874 4688875 689999999885544
No 122
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=93.86 E-value=0.011 Score=60.33 Aligned_cols=34 Identities=6% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.++|.++++|+.||..|+ .+|+|+++|||||+
T Consensus 12 titLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 12 TKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp -----------------------------------
T ss_pred EEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 36689999999999999998 99999999999986
No 123
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.0033 Score=57.10 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCCcccccccCCCEEEEEecCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccc-CCCCCc
Q 048474 76 EHLLSEYHVENGHTLHLVIRQPAQSQPSSDASSGETNGNNVTGGSEANANAPRGRMGQVSHSVLLGTFNVGDQ-GEGIAP 154 (958)
Q Consensus 76 dkTLSDYGIkDGSTIHLVlRlp~~~q~fvKtssgsTtaTs~~~aasp~Sstp~t~t~~V~PsdTVgt~Kv~Iq-~eGIPP 154 (958)
+..+++|.| ++|.+|.++..-....++++ .+. .+...|.++++|+.||.+|+ ..|+|+
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~------------------~~~l~v~~~~TV~~LK~~I~~~~gip~ 65 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQD------------------KWEVNVAPESTVLQFKEAINKANGIPV 65 (101)
T ss_dssp ------------------------CCEEEEC-SSC------------------CCCBCCCTTSBHHHHHHHHHHHHSCCS
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCE------------------EEEEEeCCCCCHHHHHHHHHHHHCcCh
Confidence 456789987 46777776655555566654 332 24588999999999999997 889999
Q ss_pred hhHHHHHH
Q 048474 155 DLTRVIGA 162 (958)
Q Consensus 155 dqQRLIfa 162 (958)
+.|||+|+
T Consensus 66 ~~QrLi~~ 73 (101)
T 3m63_B 66 ANQRLIYS 73 (101)
T ss_dssp TTCCEEET
T ss_pred HHEEEEEC
Confidence 99999874
No 124
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.96 E-value=0.42 Score=48.81 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=57.8
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--E-CC--eecCC-CCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLES--QVYSFQVDKNIPVTLFKEKIANDIGVPVG-QQRLI--F-RG--KVLKD-EHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdG--KT~TLeVdpsdTV~dLKeKIaektGIPpe-qQRLI--F-~G--KvLkD-dkTLSDYGIkDGSTIHLVl 94 (958)
+.|++..... ..+++.++..+||.+|++++.+.++++.+ +.||- | .+ ..|.| ++||.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4455554432 23677889999999999999999999997 68883 3 33 35665 5799999999999999988
Q ss_pred cCCCC
Q 048474 95 RQPAQ 99 (958)
Q Consensus 95 Rlp~~ 99 (958)
|...+
T Consensus 208 r~~dg 212 (217)
T 4a3p_A 208 KNEDG 212 (217)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 86543
No 125
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.95 E-value=0.42 Score=45.63 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=53.4
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEE-CC---e-ecCCC---------
Q 048474 22 AIVEINVKTLE---SQVYSFQVDKNIPVTLFKEKIANDI--GVP------VGQQRLIF-RG---K-VLKDE--------- 76 (958)
Q Consensus 22 etMqI~VKTLd---GKT~TLeVdpsdTV~dLKeKIaekt--GIP------peqQRLIF-~G---K-vLkDd--------- 76 (958)
.+|.|+|-..+ ...+.++|-.++||.++|+||-... +.| +++..|-| .| + +|.|.
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 46677765443 3457788889999999999998773 233 45667766 23 3 35441
Q ss_pred ----CCcccccccCCCEEEEEecC
Q 048474 77 ----HLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 77 ----kTLSDYGIkDGSTIHLVlRl 96 (958)
.||+.|+|.+|.+|-|+-|.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 36899999999999998775
No 126
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.63 E-value=0.8 Score=44.34 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=48.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEE-CC---e-ecCCC-------------CCccccccc
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDI--GVP------VGQQRLIF-RG---K-VLKDE-------------HLLSEYHVE 85 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaekt--GIP------peqQRLIF-~G---K-vLkDd-------------kTLSDYGIk 85 (958)
++..+.++|-.+|||.++|+||-+.+ ++| +++..|-| .| + +|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34567888889999999999998774 233 46777876 23 3 36552 378999999
Q ss_pred CCCEEEEEecC
Q 048474 86 NGHTLHLVIRQ 96 (958)
Q Consensus 86 DGSTIHLVlRl 96 (958)
||.+|-|+.+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999998663
No 127
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.58 E-value=0.95 Score=46.71 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=58.1
Q ss_pred EEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEE-CC----eecCC-CCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLESQ--VYSFQVDKNIPVTLFKEKIANDIGVPVG-QQRLIF-RG----KVLKD-EHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdGK--T~TLeVdpsdTV~dLKeKIaektGIPpe-qQRLIF-~G----KvLkD-dkTLSDYGIkDGSTIHLVl 94 (958)
+.+++...... .+++.+...+||.+||+++.+.++++.+ +.||-. .. ..|.| +.+|.++++.++..|.|-+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 45555443322 3567779999999999999999999997 689854 32 36665 6899999999999999988
Q ss_pred cCCCC
Q 048474 95 RQPAQ 99 (958)
Q Consensus 95 Rlp~~ 99 (958)
|...+
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 86543
No 128
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=91.10 E-value=0.0064 Score=54.40 Aligned_cols=33 Identities=3% Similarity=-0.231 Sum_probs=28.8
Q ss_pred Cccccc--cccccccccccc-c-CCCCCchhHHHHHH
Q 048474 130 RMGQVS--HSVLLGTFNVGD-Q-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~--PsdTVgt~Kv~I-q-~eGIPPdqQRLIfa 162 (958)
+.+.|. ++++|+.||.+| + .+|+|+++|||||+
T Consensus 14 ~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 14 FSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp EECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 556655 999999999999 7 88999999999985
No 129
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=91.05 E-value=0.75 Score=49.69 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=58.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEE------CCeecCCCCCcccccccCCCEEEE
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIG----VPVGQQRLIF------RGKVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektG----IPpeqQRLIF------~GKvLkDdkTLSDYGIkDGSTIHL 92 (958)
.+.++|... +.+.++.+++++||.+...+|.++.. .+.++--|.. +|+-|++.++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 355666655 78899999999999999999998874 3567777776 456799999999999999998887
Q ss_pred Eec
Q 048474 93 VIR 95 (958)
Q Consensus 93 VlR 95 (958)
-.+
T Consensus 82 ~~~ 84 (371)
T 3ivf_A 82 RKK 84 (371)
T ss_dssp EEC
T ss_pred cCc
Confidence 643
No 130
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.08 E-value=0.016 Score=53.57 Aligned_cols=35 Identities=6% Similarity=0.037 Sum_probs=31.9
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.|.++++|+.||.+|+ ++|+||++|||||+
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 446799999999999999997 99999999999976
No 131
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.95 E-value=0.015 Score=53.82 Aligned_cols=36 Identities=6% Similarity=-0.133 Sum_probs=32.3
Q ss_pred CCCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 127 PRGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 127 p~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.+.|.++++|+.||.+|+ ++|+|+++|||||+
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 3557789999999999999997 99999999999976
No 132
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=88.30 E-value=0.084 Score=44.10 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=29.9
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.++++|+.||..++ ..|+|++.|+|+|.
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 13 FPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 5578899999999999997 88999999999985
No 133
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=88.52 E-value=0.012 Score=56.00 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=30.2
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.++++|+.||.+|+ ++|+||++|||||+
T Consensus 14 I~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 14 IFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 5578999999999999998 99999999999974
No 134
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=87.99 E-value=0.014 Score=55.51 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=30.5
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|+.||.+|+ ++|+|+++|||||+
T Consensus 14 i~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 14 IFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 5689999999999999998 99999999999975
No 135
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=87.68 E-value=3.3 Score=37.03 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=49.6
Q ss_pred CcEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEECCeecCCCCCccccc
Q 048474 22 AIVEINVKTLE------S-QVYSFQVDKNIPVTLFKEKIANDIG-V----------PVGQQRLIFRGKVLKDEHLLSEYH 83 (958)
Q Consensus 22 etMqI~VKTLd------G-KT~TLeVdpsdTV~dLKeKIaektG-I----------PpeqQRLIF~GKvLkDdkTLSDYG 83 (958)
..|+|+||... | +..++++....||.+|.+.+..++. + ......+..+|+.... ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46999999873 3 4677888778999999999988752 1 1234566778877653 677
Q ss_pred ccCCCEEEEEe
Q 048474 84 VENGHTLHLVI 94 (958)
Q Consensus 84 IkDGSTIHLVl 94 (958)
+++|+.|.++-
T Consensus 83 L~dGDeV~i~p 93 (98)
T 1vjk_A 83 LKDGDVVGVFP 93 (98)
T ss_dssp CCTTCEEEEES
T ss_pred CCCCCEEEEEC
Confidence 89999998863
No 136
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=87.67 E-value=0.029 Score=49.89 Aligned_cols=32 Identities=3% Similarity=-0.069 Sum_probs=29.2
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
....+.+++||+.||.+++ ++|+||++||||+
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~ 49 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQL 49 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 4477899999999999998 9999999999986
No 137
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=87.59 E-value=0.11 Score=48.83 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=0.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.++++|+.||..|+ ..|+|++.|+|+|.
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ----------------------------------
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 5688999999999999997 89999999999974
No 138
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.16 E-value=1.3 Score=39.99 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=53.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCe-----ecCCCCCcccc--cccCCCEEEEEe
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGK-----VLKDEHLLSEY--HVENGHTLHLVI 94 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GK-----vLkDdkTLSDY--GIkDGSTIHLVl 94 (958)
..|+|+|..- .++.|+|.+..+..+|+++|.++.+++++..+|.|+-. ++..+..|.+- .++++ .|.|-+
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~C 80 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLWC 80 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEEE
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEEE
Confidence 4588888875 68999999999999999999999999999999999753 33334444432 23455 477766
Q ss_pred c
Q 048474 95 R 95 (958)
Q Consensus 95 R 95 (958)
+
T Consensus 81 ~ 81 (83)
T 1oey_A 81 E 81 (83)
T ss_dssp C
T ss_pred e
Confidence 4
No 139
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=87.01 E-value=0.012 Score=49.88 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=29.8
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|+.||.+|+ ..|+|++.|||+|+
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 5588999999999999997 89999999999874
No 140
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=86.70 E-value=3.3 Score=40.06 Aligned_cols=74 Identities=28% Similarity=0.373 Sum_probs=50.6
Q ss_pred CCcEEEEEEe---CC------CcEEEEEecCCCCHHHHHHHHHHHh----CCC----CCCeEEEEC-C---eecCC----
Q 048474 21 DAIVEINVKT---LE------SQVYSFQVDKNIPVTLFKEKIANDI----GVP----VGQQRLIFR-G---KVLKD---- 75 (958)
Q Consensus 21 ~etMqI~VKT---Ld------GKT~TLeVdpsdTV~dLKeKIaekt----GIP----peqQRLIF~-G---KvLkD---- 75 (958)
-.++.|.|-. .. ...+.++|-.+|||.++|+||-... ++| ++...|-|. | +.|.|
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 3467777765 32 2468888989999999999996652 554 345555542 2 23332
Q ss_pred ------C----CCcccccccCCCEEEEEe
Q 048474 76 ------E----HLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 76 ------d----kTLSDYGIkDGSTIHLVl 94 (958)
. .||+.|+|.+|.+|-|+-
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEee
Confidence 1 367899999999998874
No 141
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=86.31 E-value=0.14 Score=50.21 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=0.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|+.||..|+ ..|+|++.|||+|+
T Consensus 13 ~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ----------------------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5688999999999999997 89999999999986
No 142
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=85.79 E-value=0.03 Score=51.03 Aligned_cols=34 Identities=6% Similarity=-0.143 Sum_probs=30.8
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.....|.++++|+.||.+++ ++|+||++|||+|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 35689999999999999998 99999999999873
No 143
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=84.87 E-value=8 Score=32.77 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=47.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
.|+|+|.-.. ...++++....||.+|.+++ +++++...+..+|+.+..+. -+++|+.|.++-
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 4888887643 44567787789999998876 56677777889999887654 678899998874
No 144
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=84.31 E-value=0.015 Score=50.54 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=30.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|+.||.+|+ +.|+|++.|||+|+
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5588999999999999997 88999999999985
No 145
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=84.08 E-value=0.033 Score=50.49 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=31.0
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
...+.+.++++|+.||.+|+ ++|+||++|||+|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 35688999999999999998 99999999999985
No 146
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.83 E-value=0.049 Score=49.60 Aligned_cols=33 Identities=6% Similarity=-0.162 Sum_probs=30.1
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|+.||.+|+ ..|+|++.|||||.
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 5688999999999999997 99999999999985
No 147
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=83.44 E-value=3.1 Score=49.16 Aligned_cols=78 Identities=27% Similarity=0.343 Sum_probs=53.6
Q ss_pred CCcEEEEEEeCCC------cEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEEC----Ce-ecCCC-----
Q 048474 21 DAIVEINVKTLES------QVYSFQVDKNIPVTLFKEKIANDI--GVP------VGQQRLIFR----GK-VLKDE----- 76 (958)
Q Consensus 21 ~etMqI~VKTLdG------KT~TLeVdpsdTV~dLKeKIaekt--GIP------peqQRLIF~----GK-vLkDd----- 76 (958)
-.++.|+|-..+| ..+.++|-.+|||.++|+||-+.. ++| +++..|-+. |+ +|.|.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 3567777765432 347888989999999999998662 333 456666652 33 46553
Q ss_pred --------CCcccccccCCCEEEEEecCCC
Q 048474 77 --------HLLSEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 77 --------kTLSDYGIkDGSTIHLVlRlp~ 98 (958)
.||++|+|.||.+|-|+-+...
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred ecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 3789999999999999877543
No 148
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.39 E-value=0.04 Score=50.66 Aligned_cols=33 Identities=9% Similarity=-0.050 Sum_probs=29.1
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
.+...|.++++|+.||.+|+ ++||||++|+|+|
T Consensus 20 ~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 20 NVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 35678999999999999998 9999999999753
No 149
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.15 E-value=6.1 Score=36.01 Aligned_cols=50 Identities=6% Similarity=0.068 Sum_probs=41.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEECCe
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQ-QRLIFRGK 71 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeq-QRLIF~GK 71 (958)
...|+|++.. +|..+.+.|+++.+..+|.++|.+.+++..++ ..|-|...
T Consensus 4 ~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 4 GSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 3568888875 57899999999999999999999999987655 67777653
No 150
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=82.91 E-value=2.3 Score=37.04 Aligned_cols=61 Identities=7% Similarity=0.190 Sum_probs=46.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
|+|+||....+...+++....||.+|- ++.+++++.--+..+|+.+..++ +.+|++|.++-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 788999775556668999999999864 56789999887777898876555 23588887764
No 151
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=82.11 E-value=4.7 Score=47.59 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=54.9
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CC------CCCCeEEEE-C---Ce-ecCCC--------
Q 048474 21 DAIVEINVKTLE---SQVYSFQVDKNIPVTLFKEKIANDI--GV------PVGQQRLIF-R---GK-VLKDE-------- 76 (958)
Q Consensus 21 ~etMqI~VKTLd---GKT~TLeVdpsdTV~dLKeKIaekt--GI------PpeqQRLIF-~---GK-vLkDd-------- 76 (958)
-.+|.|+|-..+ ...+.++|-.+|||.++|+||-+.. ++ .+++..|-+ . |+ +|.|.
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 356788876554 3568889989999999999998773 22 356667765 2 33 45541
Q ss_pred -----CCcccccccCCCEEEEEecCC
Q 048474 77 -----HLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 77 -----kTLSDYGIkDGSTIHLVlRlp 97 (958)
.||++|+|.||.+|-|+-|..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 378999999999999988764
No 152
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=81.25 E-value=0.045 Score=49.96 Aligned_cols=30 Identities=7% Similarity=-0.120 Sum_probs=26.6
Q ss_pred ccccccccccccccc-c-CCCCCchhHHHHHH
Q 048474 133 QVSHSVLLGTFNVGD-Q-GEGIAPDLTRVIGA 162 (958)
Q Consensus 133 ~V~PsdTVgt~Kv~I-q-~eGIPPdqQRLIfa 162 (958)
.|.++++|+.||.+| + ..|+|+++|||||+
T Consensus 37 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 37 DFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp EECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred ecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 456999999999998 6 77999999999975
No 153
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=80.94 E-value=0.05 Score=50.77 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=30.1
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
....+.|.|.+||+.||.+|+ ++|+||++|||||
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ 71 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI 71 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec
Confidence 346689999999999999997 9999999999764
No 154
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=79.76 E-value=0.054 Score=47.50 Aligned_cols=33 Identities=12% Similarity=-0.110 Sum_probs=30.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.++++|+.||.+|+ ..|+|++.|||+|+
T Consensus 23 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 23 FELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 5588999999999999997 89999999999975
No 155
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=79.36 E-value=7.1 Score=40.47 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=54.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEE---CC--eecCCCCCcccccccCCCEEEEEec
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQ-QRLIF---RG--KVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeq-QRLIF---~G--KvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+|.|.|..+|| ++++.|++..|+.+|-++|.++.++.... .-|.| +| ..|+.+++|.+.+++.+..+.|..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47899999998 68899999999999999999999976433 45555 23 2577788888876655555555554
No 156
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.12 E-value=0.064 Score=50.62 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=29.5
Q ss_pred CCCcccccccccccccccccc-------CCCC--CchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-------GEGI--APDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-------~eGI--PPdqQRLIfa 162 (958)
+.+.+.|.++++|+.||.+|+ ++|+ ++++|||||+
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~ 70 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 70 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET
T ss_pred CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC
Confidence 347799999999999999886 4575 5899999986
No 157
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=78.76 E-value=6.2 Score=41.48 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEE--CCe--ecCCCCCcccccccCCCEEEEEec
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVG-QQRLIF--RGK--VLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpe-qQRLIF--~GK--vLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
...|.+.|..+|| ++.+.|++..|+.+|-+.|.++.++... ..-|.| ++. .|+.+++|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5689999999999 7889999999999999999999997643 345555 342 478888898887655555545444
No 158
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=77.40 E-value=5.1 Score=36.66 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=53.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 36 YSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 36 ~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+.-.++-..++..||+.++.+.+++-+.-.+..++..|+++++|.|-+|+-.-.|.+.+-
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 344677788999999999999999999999999998899999999999988888777664
No 159
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=77.20 E-value=6.2 Score=33.52 Aligned_cols=66 Identities=11% Similarity=0.259 Sum_probs=44.2
Q ss_pred EEEEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLES-QVYSFQVDKNIPVTLFKEKIANDIGVPV--GQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdG-KT~TLeVdpsdTV~dLKeKIaektGIPp--eqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
|+|+||.... +..++++ ...||.+|++.+..+.++.. ....+..+|+.+.+ .++-+++|+.|.++-
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 6788887642 1134666 56799999999987543321 34566677876543 256688999998874
No 160
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=76.53 E-value=0.066 Score=46.85 Aligned_cols=35 Identities=31% Similarity=0.252 Sum_probs=30.6
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 28 THITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 345678999999999999997 88999999999874
No 161
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=76.46 E-value=18 Score=31.32 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=41.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-C-----CC-----CCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIG-V-----PV-----GQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektG-I-----Pp-----eqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+...+++....||.+|++.+..++. + .. ...++..+|+.... ++-+++|+.|.++-
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 5678888778899999999988763 1 00 12567778887764 56688999998874
No 162
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.31 E-value=0.12 Score=46.06 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=30.4
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+...+.++++|+.||.+++ ++|+|++.|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 35578999999999999998 99999999999874
No 163
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.22 E-value=8.9 Score=35.64 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=55.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE-------CCeecCCCCCcccc----cccCCCE
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF-------RGKVLKDEHLLSEY----HVENGHT 89 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF-------~GKvLkDdkTLSDY----GIkDGST 89 (958)
...+-|+|-..||...+|.|++.+|+.++-+++..+.++..+.-.=+| --|.|+|+..|-+. .+.....
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr 86 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSR 86 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCE
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcE
Confidence 456777777889999999999999999999999999886644432222 23788999876554 5555666
Q ss_pred EEEEec
Q 048474 90 LHLVIR 95 (958)
Q Consensus 90 IHLVlR 95 (958)
+++.-|
T Consensus 87 ~~F~kr 92 (100)
T 1wgr_A 87 FVFRKN 92 (100)
T ss_dssp EEECSC
T ss_pred EEEecc
Confidence 665443
No 164
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=74.86 E-value=0.1 Score=46.64 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=30.3
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|+.||..++ +.|+|+++|||+|+
T Consensus 34 ~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 5689999999999999997 99999999999985
No 165
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=74.74 E-value=6.9 Score=41.24 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=55.4
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEEC---C--eecCCCCCcccccccCCCEEEE
Q 048474 19 SSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQ-QRLIFR---G--KVLKDEHLLSEYHVENGHTLHL 92 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeq-QRLIF~---G--KvLkDdkTLSDYGIkDGSTIHL 92 (958)
+....|.+.|..+||...++.|++..|+.+|-+.|.++.++.... .-|.|. | ..|+.++.|.+.......++++
T Consensus 13 ~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 13 NLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp ----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred CCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 345679999999999999999999999999999999999976433 566553 2 3577788888775444455655
Q ss_pred Eec
Q 048474 93 VIR 95 (958)
Q Consensus 93 VlR 95 (958)
-++
T Consensus 93 rvk 95 (296)
T 3qij_A 93 NVK 95 (296)
T ss_dssp EES
T ss_pred EEE
Confidence 544
No 166
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=74.37 E-value=11 Score=40.79 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=57.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEECC---------eecCCCCCcccccccCCCEE
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV-GQQRLIFRG---------KVLKDEHLLSEYHVENGHTL 90 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp-eqQRLIF~G---------KvLkDdkTLSDYGIkDGSTI 90 (958)
...+.+.|..+||....+.|++..|+.+|-+.|+++.++.. +..-|.+.. +-|+.+++|.+.++....++
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l 162 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETL 162 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEE
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceE
Confidence 35688999999999999999999999999999999999653 335665532 34556777777776666777
Q ss_pred EEEecC
Q 048474 91 HLVIRQ 96 (958)
Q Consensus 91 HLVlRl 96 (958)
++..|.
T Consensus 163 ~frvKf 168 (371)
T 3ivf_A 163 LLRRKF 168 (371)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 665553
No 167
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=74.28 E-value=0.11 Score=45.56 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=30.2
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.|.++++|+.||.+|+ ..|+|++.|||+|+
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 35678999999999999997 88999999999874
No 168
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=74.10 E-value=0.1 Score=44.15 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=29.9
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|+.||..++ +.|+|+++|||+|+
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 5689999999999999997 89999999999874
No 169
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=73.63 E-value=0.12 Score=52.37 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=30.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|..||.+|+ ..|+|++.|||+|+
T Consensus 118 ~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 118 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred EEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 5688999999999999997 88999999999874
No 170
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=73.03 E-value=9.8 Score=44.23 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=57.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEECC-----eecCCCCCcccccccCCCEEEEEe
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV-GQQRLIFRG-----KVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp-eqQRLIF~G-----KvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+..|.|.|..+|| ++.|.|++.+|+.+|-..|+.+.|+.. +..-|.|.. ..|+.+++|.+.+++.+..+.|.+
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 3579999999998 778999999999999999999999754 345666632 367778889888776665555544
Q ss_pred c
Q 048474 95 R 95 (958)
Q Consensus 95 R 95 (958)
|
T Consensus 81 R 81 (575)
T 2i1j_A 81 R 81 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 171
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=71.90 E-value=21 Score=33.39 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=49.0
Q ss_pred CcEEEEEEeCC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEEC-Ce------ecCCCC---Cc-
Q 048474 22 AIVEINVKTLE------S--QVYSFQVDK---NIPVTLFKEKIANDIGVPVGQQRLIFR-GK------VLKDEH---LL- 79 (958)
Q Consensus 22 etMqI~VKTLd------G--KT~TLeVdp---sdTV~dLKeKIaektGIPpeqQRLIF~-GK------vLkDdk---TL- 79 (958)
.+|+|+|+... + +.+++++.. ..||.+|.+.|.+++ +..+.+|+.. |+ +|-+++ .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 46999999763 3 367788873 369999999999886 2223333322 21 333333 22
Q ss_pred -ccccccCCCEEEEEecCCCC
Q 048474 80 -SEYHVENGHTLHLVIRQPAQ 99 (958)
Q Consensus 80 -SDYGIkDGSTIHLVlRlp~~ 99 (958)
.+|-+++|+.|.++-...++
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 35889999999997665554
No 172
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=71.28 E-value=6 Score=35.61 Aligned_cols=64 Identities=6% Similarity=0.004 Sum_probs=43.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 21 DAIVEINVKTLESQVYSFQVDKN-IPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdps-dTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
...|+|+| +|+.+. +... .||.+|.+++ +++++...+..+|+.+..+ ...++-+++|+.|.++-
T Consensus 18 ~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 18 GGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ----CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred CcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 34677665 566554 4565 7999998776 5667777788899887432 33456789999998875
No 173
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=70.97 E-value=0.23 Score=47.40 Aligned_cols=34 Identities=15% Similarity=0.002 Sum_probs=29.3
Q ss_pred CCcccccccccccccccccc-------CCCCC--chhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-------GEGIA--PDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-------~eGIP--PdqQRLIfa 162 (958)
.+.+.|.++++|++||.+|. ++|+| +++|||||+
T Consensus 29 ~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 29 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 46799999999999998886 57884 899999986
No 174
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=70.94 E-value=0.17 Score=46.09 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=29.6
Q ss_pred Ccccccc-cccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSH-SVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~P-sdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+ +++|+.||.+|+ ..|+|++.|||+|.
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 5588998 999999999997 89999999999873
No 175
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=70.89 E-value=0.24 Score=47.55 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=28.3
Q ss_pred ccccccccccccccccc-----c-CCCCCc--hhHHHHHH
Q 048474 131 MGQVSHSVLLGTFNVGD-----Q-GEGIAP--DLTRVIGA 162 (958)
Q Consensus 131 t~~V~PsdTVgt~Kv~I-----q-~eGIPP--dqQRLIfa 162 (958)
.+.+.++++|++||.+| + ++|+|+ ++|||||+
T Consensus 31 ~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 31 PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 37889999999999999 5 889997 89999986
No 176
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=70.29 E-value=16 Score=34.20 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=55.9
Q ss_pred cEEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEEECC---eecCCCCCcccccccCCCEEEEEe
Q 048474 23 IVEINVKTLES---QVYSFQVDKNIPVTLFKEKIANDIGVPVG--QQRLIFRG---KVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 23 tMqI~VKTLdG---KT~TLeVdpsdTV~dLKeKIaektGIPpe--qQRLIF~G---KvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
.++|+|..++. ..++++|..+.-|.-|.-+|-++..++.+ .--|-.-- .+|+-..||..|||+.+..+++.-
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 57888888654 56999999999999999999988765532 23333322 267889999999999999998864
Q ss_pred c
Q 048474 95 R 95 (958)
Q Consensus 95 R 95 (958)
.
T Consensus 99 ~ 99 (102)
T 2kmc_A 99 Q 99 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 177
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=70.01 E-value=0.19 Score=43.94 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=29.6
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.++++|+.||.+|+ ..|+|++.|||+|.
T Consensus 17 ~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 4578999999999999997 89999999999874
No 178
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=69.94 E-value=3.3 Score=39.73 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=30.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE
Q 048474 36 YSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF 68 (958)
Q Consensus 36 ~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF 68 (958)
.+++|..++|+.+||+.|++.+|+|+++|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467899999999999999999999999999954
No 179
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=69.68 E-value=0.16 Score=45.39 Aligned_cols=33 Identities=6% Similarity=-0.073 Sum_probs=29.7
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.++++|+.||.+|+ ..|+|++.|||+|+
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 4578999999999999997 89999999999874
No 180
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.35 E-value=0.21 Score=45.03 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+...|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 35578999999999999997 99999999999874
No 181
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=67.51 E-value=0.13 Score=45.09 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=29.4
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5578889999999999997 88999999999874
No 182
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=67.49 E-value=0.22 Score=42.60 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 24 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 24 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 35688999999999999997 88999999999874
No 183
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.93 E-value=0.21 Score=44.58 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=29.5
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
.+.+.|.+.++|+.||.+|+ ..|+|++.|||+|
T Consensus 28 ~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~ 61 (95)
T 1v86_A 28 KHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61 (95)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 35578899999999999997 9999999999986
No 184
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=66.34 E-value=0.15 Score=47.16 Aligned_cols=33 Identities=33% Similarity=0.303 Sum_probs=29.7
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.++++|+.||.+|+ ..|+|++.|||+|+
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 22 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 5578999999999999997 88999999999874
No 185
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=66.33 E-value=0.25 Score=43.55 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=28.3
Q ss_pred Ccc-cccccccccccccccc-CCCCCchhHHHH
Q 048474 130 RMG-QVSHSVLLGTFNVGDQ-GEGIAPDLTRVI 160 (958)
Q Consensus 130 ~t~-~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLI 160 (958)
+.+ .+.++++|+.||.+|+ ..|+|++.|||+
T Consensus 19 ~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 19 YSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp EEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 456 8899999999999997 999999999998
No 186
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=66.33 E-value=0.08 Score=48.41 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.+.++|..||..|. ..|++++.|||+|.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 4578889999999999997 88999999999874
No 187
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.21 E-value=0.23 Score=44.57 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=28.4
Q ss_pred cccccccccccccccccc-CCCCCchhHHHHH
Q 048474 131 MGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 131 t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
.+.|.+.++|+.||.+|+ ..|+|++.|||+|
T Consensus 21 ~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 21 GVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp EEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 378899999999999997 9999999999996
No 188
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=65.52 E-value=0.15 Score=44.69 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.6
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|..||..|+ ..|+|++.|||+|.
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 5578899999999999997 88999999999974
No 189
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=65.24 E-value=0.3 Score=44.55 Aligned_cols=33 Identities=6% Similarity=-0.098 Sum_probs=27.5
Q ss_pred Ccccccccccccccccccc--CCCCCc-hhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ--GEGIAP-DLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq--~eGIPP-dqQRLIfa 162 (958)
+.+.+.++++|+.||.+|+ .+|+|| ++|||||+
T Consensus 38 i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 38 QTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp EEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 4577899999999999997 366775 99999985
No 190
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=65.23 E-value=0.2 Score=44.36 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=29.6
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 4578999999999999997 89999999999875
No 191
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.74 E-value=0.26 Score=43.28 Aligned_cols=33 Identities=12% Similarity=-0.052 Sum_probs=27.7
Q ss_pred Ccccccccccccccccccc-CC--CCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GE--GIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~e--GIPPdqQRLIfa 162 (958)
+...+.++++|+.||.+|+ .. |++++.|||||+
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 3345669999999999997 55 999999999975
No 192
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=63.87 E-value=0.2 Score=42.14 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=28.7
Q ss_pred ccc-ccccccccccccccc-CCCCCchhHHHHHH
Q 048474 131 MGQ-VSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 131 t~~-V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+. |.++++|+.||.+|+ ..|+|++.|||+|+
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 477 999999999999997 88999999999874
No 193
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=63.58 E-value=25 Score=30.70 Aligned_cols=70 Identities=4% Similarity=0.032 Sum_probs=44.3
Q ss_pred EEEEEEeC------CCcEEEEEecCCCCHHHHHHHHHHHhC-----C-C---C----CCeEEEECCeecCCCCCcccccc
Q 048474 24 VEINVKTL------ESQVYSFQVDKNIPVTLFKEKIANDIG-----V-P---V----GQQRLIFRGKVLKDEHLLSEYHV 84 (958)
Q Consensus 24 MqI~VKTL------dGKT~TLeVdpsdTV~dLKeKIaektG-----I-P---p----eqQRLIF~GKvLkDdkTLSDYGI 84 (958)
|+|+|+.. -|+..++++ ...||.+|++.+.+++. + . . ...++..+|+...+..- .++-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 66777765 233334665 45799999999998863 0 1 0 13456667776653222 25678
Q ss_pred cCCCEEEEEec
Q 048474 85 ENGHTLHLVIR 95 (958)
Q Consensus 85 kDGSTIHLVlR 95 (958)
++|+.|.++-.
T Consensus 79 ~~gDeV~i~Pp 89 (93)
T 3dwg_C 79 ADGDSVTILPA 89 (93)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEECC
Confidence 99999988753
No 194
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=63.00 E-value=0.3 Score=43.53 Aligned_cols=34 Identities=32% Similarity=0.271 Sum_probs=30.0
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.|.+.++|..||.+|+ ..|+|++.|||+|.
T Consensus 34 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 34 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 45678999999999999997 88999999999874
No 195
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=62.74 E-value=21 Score=30.09 Aligned_cols=55 Identities=7% Similarity=0.104 Sum_probs=38.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIG-----VPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektG-----IPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+.++++ ....||.+|++.+..++. ++.....+..+|+.... ++-+++|+.|.++-
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 345555 567899999999976532 22344567788887753 55788999998873
No 196
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=62.33 E-value=0.28 Score=41.71 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=29.0
Q ss_pred Ccccccccccccccccccc-C---CCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-G---EGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~---eGIPPdqQRLIfa 162 (958)
+...|.+.++|+.||.+|+ . +|+|++.|||+|.
T Consensus 18 ~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 18 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred EEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 4578899999999999997 3 8999999999874
No 197
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.25 E-value=0.33 Score=42.70 Aligned_cols=34 Identities=9% Similarity=-0.171 Sum_probs=30.2
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 28 ~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 28 CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 35688999999999999997 88999999999874
No 198
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=60.72 E-value=0.3 Score=45.66 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=29.4
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
+...+.++++|+.||.+|+ ..|+||++|||+|
T Consensus 20 ~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~ 52 (122)
T 1t0y_A 20 MEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQL 52 (122)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 5578999999999999998 9999999999987
No 199
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.09 E-value=0.33 Score=41.59 Aligned_cols=33 Identities=3% Similarity=-0.023 Sum_probs=29.5
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|..||.+|+ ..|+|++.|||+|.
T Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 20 YAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp EEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred EEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 4578899999999999997 88999999999874
No 200
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.74 E-value=0.38 Score=42.63 Aligned_cols=33 Identities=6% Similarity=-0.054 Sum_probs=29.1
Q ss_pred Ccccccccccccccccccc-C---CCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-G---EGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~---eGIPPdqQRLIfa 162 (958)
+...|.+.++|+.||..|+ . +|+|++.|||+|+
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred EEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 5578999999999999997 4 7999999999874
No 201
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=58.59 E-value=48 Score=29.60 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=42.1
Q ss_pred EEEEEEeC------C-C-cEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEE---EECCe------ecCCCC---Cc--
Q 048474 24 VEINVKTL------E-S-QVYSFQVD--KNIPVTLFKEKIANDIGVPVGQQRL---IFRGK------VLKDEH---LL-- 79 (958)
Q Consensus 24 MqI~VKTL------d-G-KT~TLeVd--psdTV~dLKeKIaektGIPpeqQRL---IF~GK------vLkDdk---TL-- 79 (958)
|+|+||.. - | +..++++. ...||.+|++.+.+++.-. ..++ .-+|+ ++-++. .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~--~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~ 79 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINN--PNDVSIFIEDDSIRPGIITLINDTDWELEGE 79 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSS--GGGHHHHEETTEECTTEEEEETTEEGGGGTG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchh--hHHHhhhccCCccccCeEEEECCEEccccCC
Confidence 78888765 2 2 45667776 6789999999999886311 1111 11221 222222 12
Q ss_pred ccccccCCCEEEEEe
Q 048474 80 SEYHVENGHTLHLVI 94 (958)
Q Consensus 80 SDYGIkDGSTIHLVl 94 (958)
.++-+++|+.|.++-
T Consensus 80 ~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 80 KDYILEDGDIISFTS 94 (99)
T ss_dssp GGCBCCTTCEEEEEE
T ss_pred CCcCcCCCCEEEEEC
Confidence 357799999998864
No 202
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.30 E-value=0.41 Score=43.39 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=30.2
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.+.|.+.++|+.||.+|+ ..|++++.|||+|.
T Consensus 35 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 35 DLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp EEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 35588999999999999997 99999999999874
No 203
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=58.27 E-value=0.33 Score=41.07 Aligned_cols=33 Identities=33% Similarity=0.315 Sum_probs=29.4
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+.++|..||..|+ ..|+|++.|||+|.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 4578889999999999997 88999999999884
No 204
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=57.69 E-value=0.41 Score=44.00 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=30.9
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.|.++++|+.||.+|+ ..|+|++.|||+|.
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 345688999999999999997 89999999999985
No 205
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=57.28 E-value=16 Score=30.61 Aligned_cols=55 Identities=7% Similarity=0.222 Sum_probs=39.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 34 QVYSFQVDKNIPVTLFKEKIANDIGVPVGQQ--RLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 34 KT~TLeVdpsdTV~dLKeKIaektGIPpeqQ--RLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+..++++....||.+|++.+..++. ..... .+..+|+.... ++-+++|+.|.++-
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEEC
Confidence 3566777777899999999987742 11233 67788988764 36788999998863
No 206
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=57.24 E-value=0.39 Score=47.33 Aligned_cols=34 Identities=32% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+...|.+.++|+.||.+|+ +.|+|++.|||+|+
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 35688999999999999997 89999999999985
No 207
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=57.21 E-value=0.41 Score=39.38 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.++++|+.||..++ ..|+|++.|+|+|.
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4578899999999999997 88999999999874
No 208
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=56.99 E-value=28 Score=36.97 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC-eecCC-CCCccccc
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG-KVLKD-EHLLSEYH 83 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G-KvLkD-dkTLSDYG 83 (958)
.-....+.+.+..|+.+||++|++.++++++.|.|+|.+ +..-+ ......|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 446677889999999999999999999999999999998 44433 34444543
No 209
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.91 E-value=0.4 Score=41.35 Aligned_cols=33 Identities=12% Similarity=0.007 Sum_probs=29.2
Q ss_pred Ccc-cccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMG-QVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~-~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+ .|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 21 ~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 21 CTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred EEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 457 4899999999999997 89999999999874
No 210
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=56.67 E-value=0.32 Score=42.50 Aligned_cols=33 Identities=15% Similarity=-0.014 Sum_probs=29.1
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.++++|+.||.+|+ ..|+|++.|||+|.
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4578889999999999997 88999999999864
No 211
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=56.60 E-value=0.42 Score=40.35 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.3
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+.++|.+||..|+ ..|+|++.|||+|.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4578889999999999997 88999999999874
No 212
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=55.65 E-value=0.34 Score=40.28 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=29.1
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.++++|+.||..++ ..|+|++.|||+|.
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4578889999999999997 88999999999864
No 213
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.35 E-value=0.74 Score=40.89 Aligned_cols=30 Identities=7% Similarity=-0.117 Sum_probs=27.0
Q ss_pred cccccccccccccccc--CCCCCchhHHHHHH
Q 048474 133 QVSHSVLLGTFNVGDQ--GEGIAPDLTRVIGA 162 (958)
Q Consensus 133 ~V~PsdTVgt~Kv~Iq--~eGIPPdqQRLIfa 162 (958)
.|.++++|+.||..|+ ++|++|++|||+|.
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 7899999999999997 48999999999764
No 214
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=53.98 E-value=35 Score=30.60 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=42.9
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC-----C----Ce-------EEEECCeecCCCCC
Q 048474 23 IVEINVKTLE------S-QVYSFQVDKNIPVTLFKEKIANDIG-VPV-----G----QQ-------RLIFRGKVLKDEHL 78 (958)
Q Consensus 23 tMqI~VKTLd------G-KT~TLeVdpsdTV~dLKeKIaektG-IPp-----e----qQ-------RLIF~GKvLkDdkT 78 (958)
+|+|+|+... | +.++++ ..||.+|.+.+..++. +.. . .. .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 4889998863 2 344444 6899999999988752 111 0 12 5666776553211
Q ss_pred cccccccCCCEEEEEe
Q 048474 79 LSEYHVENGHTLHLVI 94 (958)
Q Consensus 79 LSDYGIkDGSTIHLVl 94 (958)
-.++-+++|+.|.++-
T Consensus 79 ~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 GLETLLKDSDEIGILP 94 (99)
T ss_dssp STTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
Confidence 1245688999998863
No 215
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.95 E-value=0.51 Score=39.58 Aligned_cols=33 Identities=15% Similarity=0.006 Sum_probs=29.2
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+.++|+.||..|+ ..|+|++.|||+|.
T Consensus 20 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 20 CSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp EEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 4578889999999999997 88999999999874
No 216
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=53.25 E-value=37 Score=30.95 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=35.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF 68 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF 68 (958)
..|+|+|-. ++..|-|.|..+.+..+||.||..+..+ +...|++
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ 54 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQT 54 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEE
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEE
Confidence 457777765 4579999999999999999999999988 4555443
No 217
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=53.15 E-value=0.55 Score=43.01 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.6
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|..||.+|+ +.|+|++.|||+|.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 5578999999999999997 88999999999874
No 218
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=52.66 E-value=19 Score=33.45 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=32.7
Q ss_pred CcEEEEEEeCC-------CcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 048474 22 AIVEINVKTLE-------SQVYSFQVDKNIPVTLFKEKIANDIGVP 60 (958)
Q Consensus 22 etMqI~VKTLd-------GKT~TLeVdpsdTV~dLKeKIaektGIP 60 (958)
..|+|+|..-+ +..+.|.|.++.+..+|..+|.++++++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 34888888653 5679999999999999999999998864
No 219
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=51.61 E-value=0.51 Score=43.40 Aligned_cols=35 Identities=9% Similarity=-0.169 Sum_probs=30.9
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGAL 163 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfav 163 (958)
.+.+.+.+.++|..||..++ ++||||++|+|||.-
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 36689999999999999997 999999999988753
No 220
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=49.98 E-value=4.5 Score=37.76 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=45.9
Q ss_pred cEEEEEEeCC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEE-CC--e------ecCCCCCc----
Q 048474 23 IVEINVKTLE------SQVYSFQVDK----NIPVTLFKEKIANDIGVPVGQQRLIF-RG--K------VLKDEHLL---- 79 (958)
Q Consensus 23 tMqI~VKTLd------GKT~TLeVdp----sdTV~dLKeKIaektGIPpeqQRLIF-~G--K------vLkDdkTL---- 79 (958)
+|+|+||... |+.+.+++.. ..||.+|-+.|.+++. ..+-+|+. +| + +|-+++-.
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 4888888763 4555666663 2599999888888762 22334432 23 1 34333332
Q ss_pred -ccccccCCCEEEEEecCCC
Q 048474 80 -SEYHVENGHTLHLVIRQPA 98 (958)
Q Consensus 80 -SDYGIkDGSTIHLVlRlp~ 98 (958)
.+|-+++|++|.++-...+
T Consensus 82 gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCC
T ss_pred CcccCCCCcCEEEEeCCCcc
Confidence 3588999999988765544
No 221
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=48.70 E-value=0.66 Score=41.83 Aligned_cols=32 Identities=16% Similarity=-0.012 Sum_probs=29.0
Q ss_pred cccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 131 MGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 131 t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
.+.|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 478899999999999997 88999999999874
No 222
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=48.04 E-value=0.87 Score=40.24 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.4
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.+.++|+.||..|+ ..|+|++.|||+|.
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4578899999999999997 88999999999874
No 223
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=47.72 E-value=16 Score=43.45 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=42.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCe-ecCCCCCcccc
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGK-VLKDEHLLSEY 82 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GK-vLkDdkTLSDY 82 (958)
..+.+++.+.+++|+.+||.+|++.++++++.|.|++... .+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 4566788999999999999999999999999999999764 55555566655
No 224
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=47.52 E-value=0.65 Score=41.85 Aligned_cols=33 Identities=15% Similarity=-0.082 Sum_probs=29.3
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|+.||.+|+ ..|+|++.|||+|.
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4578899999999999997 88999999999874
No 225
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.32 E-value=0.78 Score=40.11 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=27.7
Q ss_pred Cccccccc-----ccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHS-----VLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~Ps-----dTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+. .+|+.||.+|+ ..|+|++.|||+|.
T Consensus 19 ~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 19 HDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp EEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred EEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 34667774 89999999997 88999999999863
No 226
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=46.25 E-value=0.7 Score=37.93 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.0
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...+.+.++|+.||..+. ..|+|++.|+|+|.
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 4578889999999999987 88999999999874
No 227
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.15 E-value=0.27 Score=45.62 Aligned_cols=29 Identities=7% Similarity=-0.173 Sum_probs=24.6
Q ss_pred CCcccccccccccccccccc-CCCCCchhH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLT 157 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQ 157 (958)
.+...|.+++||++||..|+ +.|+||+.|
T Consensus 19 ~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 19 VMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 36689999999999999998 888888544
No 228
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.62 E-value=0.72 Score=43.46 Aligned_cols=35 Identities=14% Similarity=-0.066 Sum_probs=30.6
Q ss_pred CCCcccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 128 RGRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 128 ~t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.+.|.++++|+.||.+|+ ..|++++.|||||.
T Consensus 42 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 42 EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 345678899999999999997 88999999999975
No 229
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=44.52 E-value=36 Score=28.01 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=40.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 24 VEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 24 MqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
|+|+|+..+|+.+ ++....|+.+|-+.|..... ..-.-...+|+..+- ++-+++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 5677777788764 56678899999888743321 111222457776543 366678888888764
No 230
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=43.97 E-value=1.3 Score=40.28 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=27.0
Q ss_pred cccc-ccccccccccccc-CCCCCchhHHHHH
Q 048474 132 GQVS-HSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 132 ~~V~-PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
..|. ++++|..||.+|+ +.|+|++.|||++
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 6788 9999999999997 8999999999864
No 231
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=43.71 E-value=52 Score=37.47 Aligned_cols=61 Identities=8% Similarity=0.094 Sum_probs=47.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEECC----eecCCCCCccc
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPV--GQQRLIFRG----KVLKDEHLLSE 81 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPp--eqQRLIF~G----KvLkDdkTLSD 81 (958)
...|.+.|..+||....+.|+...|+.+|-+.|+++.|+.. +..-|.+.. +.|++++.+.|
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 34689999999999999999999999999999999999874 455665532 23666655543
No 232
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.67 E-value=1.3e+02 Score=28.14 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=53.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---ECCe--ecCCCCCcccccccCCCEEEEEecC
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLI---FRGK--VLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLI---F~GK--vLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
.+-..|-..+...+++++....|+.+|+..++++.+...+.+.|+ +.|. +|++++.--.-.+.-...|++..|.
T Consensus 9 ~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred ceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 455666666778889999999999999999999999876678885 4563 5666554333334445677777664
No 233
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=43.08 E-value=23 Score=30.61 Aligned_cols=57 Identities=11% Similarity=0.183 Sum_probs=41.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEecC
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQ 96 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRl 96 (958)
+|+.+.+ ...||.+|.+ ..+++++..-+.++|+.+.. ....++-+++|+.|.++--.
T Consensus 6 NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCC
T ss_pred CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccc
Confidence 5776665 5589998865 45788888888899987742 23345678999999988543
No 234
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=42.89 E-value=1.3 Score=48.13 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=29.8
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+...|.+.++|+.||.+|+ ..|+|++.|||+|+
T Consensus 246 ~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 246 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 4588999999999999997 89999999999875
No 235
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=42.80 E-value=1.1 Score=49.59 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=26.6
Q ss_pred Ccccccccccccccccccc----CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ----GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq----~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|+.||.+|+ ++|++++.|||||.
T Consensus 20 ~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 20 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred EEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 5578888899999998885 36799999998863
No 236
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=42.48 E-value=21 Score=31.27 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=42.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEEECCeecCCCCCcccccccCCCEEEEEecCC
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVP-VGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIRQP 97 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIP-peqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlRlp 97 (958)
+|+.+.+......||.+|.+.+ +++ +...-+.++|..+.. ....++-+++|+.|.++--..
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~Vg 67 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMG 67 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCC
T ss_pred CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeec
Confidence 5776554321567999987654 677 777778899988743 345567789999998875443
No 237
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=41.92 E-value=11 Score=35.93 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=52.2
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEEECC---eecCCCCCcccccccCCCEEEEE
Q 048474 23 IVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVG--QQRLIFRG---KVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 23 tMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpe--qQRLIF~G---KvLkDdkTLSDYGIkDGSTIHLV 93 (958)
.++|+|..++ ..++++|..+.-|.-|.-+|-++..++.+ .--|-.-- .+|+-..||..|||+.+..+++.
T Consensus 26 eL~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 26 ELSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CEECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 4677777665 88999999999999999999988765432 22222211 26788899999999999888764
No 238
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=41.82 E-value=17 Score=41.84 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=30.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE
Q 048474 36 YSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF 68 (958)
Q Consensus 36 ~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF 68 (958)
..++|..++|+.+||++|++.+|+++++|||-.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 367999999999999999999999999999943
No 239
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.81 E-value=0.8 Score=41.29 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=29.4
Q ss_pred Ccccccccccccccccccc-CCCCCchhHHHHHH
Q 048474 130 RMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVIGA 162 (958)
Q Consensus 130 ~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIfa 162 (958)
+.+.|.+.++|+.||.+|+ ..|++++.|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4578899999999999997 88999999999875
No 240
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=40.59 E-value=24 Score=40.58 Aligned_cols=77 Identities=8% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCCCcEEEEEEeCCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEECC------eecC-CCCCcccc--c
Q 048474 19 SSDAIVEINVKTLES--QVYS----FQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRG------KVLK-DEHLLSEY--H 83 (958)
Q Consensus 19 ~s~etMqI~VKTLdG--KT~T----LeVdpsdTV~dLKeKIaektGIPpeqQRLIF~G------KvLk-DdkTLSDY--G 83 (958)
.....|-||+|..|- +++. +-|+...+|.+|-..|.++.|+|++.--++|.- ..|+ .+.|+.+. .
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 344679999998863 3433 478899999999999999999999887666753 3567 57899999 9
Q ss_pred ccCCCEEEEEec
Q 048474 84 VENGHTLHLVIR 95 (958)
Q Consensus 84 IkDGSTIHLVlR 95 (958)
|.+|++|.+=..
T Consensus 206 L~~GdII~fQ~~ 217 (530)
T 2ylm_A 206 LMDGDIIVFQKD 217 (530)
T ss_dssp CCTTEEEEEEEC
T ss_pred ccCCCEEEEEec
Confidence 999999876554
No 241
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.63 E-value=1.3 Score=40.18 Aligned_cols=29 Identities=7% Similarity=-0.142 Sum_probs=25.2
Q ss_pred cccc-ccccccccccc-CC--CCCchh-HHHHHH
Q 048474 134 VSHS-VLLGTFNVGDQ-GE--GIAPDL-TRVIGA 162 (958)
Q Consensus 134 V~Ps-dTVgt~Kv~Iq-~e--GIPPdq-QRLIfa 162 (958)
|.++ ++|+.||.+|+ .. |+|++. |||||.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 6665 99999999997 77 999999 999875
No 242
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=39.47 E-value=34 Score=28.33 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 32 ESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 32 dGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
+|+.+. +....||.+|.+++ +++.....+..+|+.+... ...++-+++|+.|.++-
T Consensus 6 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 6 NDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp SSCEEC--CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CCEEEE--cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 566554 45678999998876 5666777778888877431 12245678999998874
No 243
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=36.00 E-value=2.2 Score=46.22 Aligned_cols=32 Identities=3% Similarity=0.024 Sum_probs=29.0
Q ss_pred CCcccccccccccccccccc-CCCCCchhHHHH
Q 048474 129 GRMGQVSHSVLLGTFNVGDQ-GEGIAPDLTRVI 160 (958)
Q Consensus 129 t~t~~V~PsdTVgt~Kv~Iq-~eGIPPdqQRLI 160 (958)
.+...+.++++|+.||.+|+ ..|+||++|+||
T Consensus 16 ~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi 48 (320)
T 3shq_A 16 EYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL 48 (320)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence 35578899999999999997 999999999998
No 244
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=35.85 E-value=55 Score=26.97 Aligned_cols=56 Identities=11% Similarity=0.232 Sum_probs=39.6
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 31 LESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 31 LdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
.+|+.+.+ ...||.+|.+.+ +++.....+..+|+.+..+ .-.++-+++|+.|.++-
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 46777655 568999998877 4566667777888877432 22345688999998875
No 245
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=33.43 E-value=83 Score=28.47 Aligned_cols=59 Identities=17% Similarity=0.324 Sum_probs=48.6
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHhhhhhccCCCChHHHHHh-h--cCCHHHHHHHHHHHHHHHHHHhcccc
Q 048474 887 IQQVVQRIEHLDPPGEVFRAVVQNAGQLHCNGSGREDLVSE-L--CSDEDLAEEYAEILRSDIYQRLKGDS 954 (958)
Q Consensus 887 l~~~~q~ie~~~~p~dif~av~e~a~~~~~~~~~~~~~~~e-l--~~~e~la~ey~~~l~~dv~~rl~~~s 954 (958)
|.|++.-+|.|.+|-|.=.=|+.|.+- .+|++ . ..-+.+|+.|.+-|..-|..||+-+.
T Consensus 16 l~eli~VLEKH~Ap~DLSLMvLGN~vT---------nlln~~V~~~qR~~iAe~Fa~AL~~Svk~~~~~~~ 77 (80)
T 2juz_A 16 VNDMIAVLEKHKAPVDLSLIALGNMAS---------NLLTTSVPQTQCEALAQAFSNSLINAVKTRLEHHH 77 (80)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHH---------HHHTTSSCSTTHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHH---------HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999875 23332 1 23468999999999999999998654
No 246
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=31.56 E-value=2.6e+02 Score=25.48 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=54.5
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHh-C--C--CCCCeEEEECCee--cCCCCCcccccccCCCEEEEEe
Q 048474 24 VEINVKTLESQ-VYSFQVDKNIPVTLFKEKIANDI-G--V--PVGQQRLIFRGKV--LKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 24 MqI~VKTLdGK-T~TLeVdpsdTV~dLKeKIaekt-G--I--PpeqQRLIF~GKv--LkDdkTLSDYGIkDGSTIHLVl 94 (958)
+-|..+....- ..-+.|+..+|+.++-++++... | + .+.-.|..++|+. |.++.|+++-||+.-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 44555554333 34568999999999999998773 3 2 2346788899987 9999999999999999888875
No 247
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.92 E-value=94 Score=33.29 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEC-------CeecCCCCCcccc----cccCC
Q 048474 19 SSDAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFR-------GKVLKDEHLLSEY----HVENG 87 (958)
Q Consensus 19 ~s~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~-------GKvLkDdkTLSDY----GIkDG 87 (958)
+.-..+-|.|-..+|...+|.|++.+|+.+|-+.+..+.++....-..+|. -|.|+|+..+.+. .....
T Consensus 27 a~~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~ 106 (281)
T 4gmv_A 27 AQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQ 106 (281)
T ss_dssp TSSCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCC
T ss_pred cCcccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCC
Confidence 334556677777789999999999999999999999988865444333332 2788888877653 44455
Q ss_pred CEEEEE
Q 048474 88 HTLHLV 93 (958)
Q Consensus 88 STIHLV 93 (958)
..|.+.
T Consensus 107 n~l~f~ 112 (281)
T 4gmv_A 107 NKLIFM 112 (281)
T ss_dssp CEEEEE
T ss_pred ceEEEE
Confidence 555554
No 248
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=30.58 E-value=1.5e+02 Score=28.51 Aligned_cols=75 Identities=9% Similarity=0.021 Sum_probs=52.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---ECCe--ecCCCCCcccccccCCCEE
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVG------QQRLI---FRGK--VLKDEHLLSEYHVENGHTL 90 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpe------qQRLI---F~GK--vLkDdkTLSDYGIkDGSTI 90 (958)
..+-..|-..+...+++++....|+.+|+..+++|.+..-+ .+.|+ +.|. +|++++.--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 45667777777778889999999999999999999987544 67774 4663 6676554333334445567
Q ss_pred EEEecC
Q 048474 91 HLVIRQ 96 (958)
Q Consensus 91 HLVlRl 96 (958)
++..|.
T Consensus 88 fvc~kd 93 (120)
T 2dhz_A 88 FACTRD 93 (120)
T ss_dssp EEECTT
T ss_pred EEeehH
Confidence 666553
No 249
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=30.48 E-value=3 Score=36.27 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=25.1
Q ss_pred ccccccccccccccc-CCCCCchhHHHHH
Q 048474 134 VSHSVLLGTFNVGDQ-GEGIAPDLTRVIG 161 (958)
Q Consensus 134 V~PsdTVgt~Kv~Iq-~eGIPPdqQRLIf 161 (958)
+.+.++|+.||..|+ +.|++++.|||++
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 788999999999997 8899999999853
No 250
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=29.46 E-value=77 Score=30.76 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEEE--CCeec-----CC--CCCcccccccCCCEEEEEec
Q 048474 43 NIPVTLFKEKIANDIGVPVGQQRLIF--RGKVL-----KD--EHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 43 sdTV~dLKeKIaektGIPpeqQRLIF--~GKvL-----kD--dkTLSDYGIkDGSTIHLVlR 95 (958)
..|..+|-+.|..++|+. +..-++- +.|.| +| +++|++.||++|+.|.+.--
T Consensus 19 ~~TL~dLV~~l~~~~gy~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 479999888898899976 3444432 23444 23 58999999999998877643
No 251
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=28.99 E-value=2.9e+02 Score=25.96 Aligned_cols=74 Identities=5% Similarity=0.065 Sum_probs=52.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC-C-------CCCCeEEEE---CCe--ecCC-CCCcccccccC
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIG-V-------PVGQQRLIF---RGK--VLKD-EHLLSEYHVEN 86 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektG-I-------PpeqQRLIF---~GK--vLkD-dkTLSDYGIkD 86 (958)
+..+.|.+-..+|-.+.++|..+.|+.+||+.+.+..+ . .++.-.+.+ .+. .|.| .+.|.+....
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf- 95 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF- 95 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-
Confidence 46788888888999999999999999999999988843 1 122222222 122 4655 5889988776
Q ss_pred CCEEEEEec
Q 048474 87 GHTLHLVIR 95 (958)
Q Consensus 87 GSTIHLVlR 95 (958)
-..+.|+.|
T Consensus 96 ~piLklver 104 (108)
T 2v1y_A 96 QPFLKVIEP 104 (108)
T ss_dssp SSEEEEECC
T ss_pred ceEEEEEee
Confidence 456777765
No 252
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=28.73 E-value=86 Score=28.72 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=48.6
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHH--Hh-CCCCCCeEEEECCeecCCCCCcccccccCCCEEEEEec
Q 048474 22 AIVEINVKTLE---SQVYSFQVDKNIPVTLFKEKIAN--DI-GVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 22 etMqI~VKTLd---GKT~TLeVdpsdTV~dLKeKIae--kt-GIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
+.|+|.|-+.. .+.+.+++....||.++-+..-- ++ .|......+-.+|+..+ .++-+++|+.|.++--
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 46777776542 34566788899999998877643 22 35555678888888776 4566889999988743
No 253
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=28.28 E-value=1.3e+02 Score=30.54 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEE---C----CeecCCCCCccc
Q 048474 21 DAIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIF---R----GKVLKDEHLLSE 81 (958)
Q Consensus 21 ~etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF---~----GKvLkDdkTLSD 81 (958)
...+.|.|-..++...++.|++.+|+.+|-+.+.++.+++.+...-+| . -+.|.|+..+.+
T Consensus 32 ~~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~v~~ 99 (291)
T 3tca_A 32 VKKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVE 99 (291)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSBHHH
T ss_pred ccceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchhHHH
Confidence 345566676778999999999999999999999999997655432222 1 257777765443
No 254
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=27.86 E-value=1.6e+02 Score=25.00 Aligned_cols=56 Identities=7% Similarity=0.143 Sum_probs=37.1
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEECCeecCCCCCcccccccCCCEEEEEe
Q 048474 38 FQVDKNIPVTLFKEKIANDIG------V-----PVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLVI 94 (958)
Q Consensus 38 LeVdpsdTV~dLKeKIaektG------I-----PpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLVl 94 (958)
++++...||.+|.+.+..++. + ......+..+|+...... -.++-+++|+.|.++-
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 456556899999999988752 1 013456777887664221 1345689999998873
No 255
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=26.75 E-value=2.2e+02 Score=25.98 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=48.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHh-C--C--CCC-CeEEEECC--eecCCCCCcccccccCCCEEEEEec
Q 048474 36 YSFQVDKNIPVTLFKEKIANDI-G--V--PVG-QQRLIFRG--KVLKDEHLLSEYHVENGHTLHLVIR 95 (958)
Q Consensus 36 ~TLeVdpsdTV~dLKeKIaekt-G--I--Ppe-qQRLIF~G--KvLkDdkTLSDYGIkDGSTIHLVlR 95 (958)
.-+.|+..+|+.++-++++... | + .+. -.|..++| +.|..+.|+++-+|+.-..|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4568999999999999998773 3 2 233 46778999 8999999999999999888887653
No 256
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=24.38 E-value=91 Score=28.74 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=41.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEECC-eecCC------CCCcccccccCCCEEEEE
Q 048474 35 VYSFQVDKNIPVTLFKEKIANDIGVPVG-----------QQRLIFRG-KVLKD------EHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 35 T~TLeVdpsdTV~dLKeKIaektGIPpe-----------qQRLIF~G-KvLkD------dkTLSDYGIkDGSTIHLV 93 (958)
...++|++++|..+|-+.+.+.-.+-.. ...|++.. ..|+. +++|.+.|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999995433222 33444443 23332 578999999999998884
No 257
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=23.71 E-value=1.9e+02 Score=26.35 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=31.5
Q ss_pred cEEEEEEeCCCc-EEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q 048474 23 IVEINVKTLESQ-VYSFQVD-KNIPVTLFKEKIANDIGVPVGQQRL 66 (958)
Q Consensus 23 tMqI~VKTLdGK-T~TLeVd-psdTV~dLKeKIaektGIPpeqQRL 66 (958)
+..|+-|....+ ..++.++ ...+|.+||.+|..+.+.-....-|
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 345666666554 4567777 6799999999999998775555554
No 258
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.70 E-value=1.4e+02 Score=35.18 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 048474 22 AIVEINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVP 60 (958)
Q Consensus 22 etMqI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIP 60 (958)
..|.+.|..++|..+++.|+...|+.+|-+.|+++.++.
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~ 300 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLK 300 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCc
Confidence 468999999999999999999999999999999999854
No 259
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=22.14 E-value=1.2e+02 Score=32.05 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=39.2
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEEC-------CeecCCCCCcccc
Q 048474 25 EINVKTLESQVYSFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFR-------GKVLKDEHLLSEY 82 (958)
Q Consensus 25 qI~VKTLdGKT~TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~-------GKvLkDdkTLSDY 82 (958)
-|+|-..+|...+|.|++.+|+.+|=..+..+.++..+.-..+|. -|.|+|+..+-+.
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 444555789999999999999999999999887765444433442 2788888776553
No 260
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=21.36 E-value=21 Score=30.68 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=34.8
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEECCeecCCCCCcccccccCCCEEEEE
Q 048474 37 SFQVDKNIPVTLFKEKIANDIGVPVGQQRLIFRGKVLKDEHLLSEYHVENGHTLHLV 93 (958)
Q Consensus 37 TLeVdpsdTV~dLKeKIaektGIPpeqQRLIF~GKvLkDdkTLSDYGIkDGSTIHLV 93 (958)
++++....||.+|.+.+ +++.....+..+|+.+..+ +-+++|+.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 34556678999998765 4666777788899988654 567888887664
Done!