BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048475
         (575 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From
           Neisseria Meningitidis Z2491 At 1.91 A Resolution
 pdb|3JTX|B Chain B, Crystal Structure Of Aminotransferase (np_283882.1) From
           Neisseria Meningitidis Z2491 At 1.91 A Resolution
          Length = 396

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 115 SLVYFRG-KPVGTIAALD----SSEEELNYDQVFVRDFVPSALAFLMNGEPEIVKNFIL 168
           S +YF G KP+G + A      S ++ L +  +  R  VP   +  + G+ E++KNF+L
Sbjct: 211 SEIYFDGNKPLGCLQAAAQLGRSRQKLLXFTSLSXRSNVPGLRSGFVAGDAELLKNFLL 269


>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
           Protein From Arabidopsis Thaliana
          Length = 89

 Score = 28.9 bits (63), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 400 SLATEEQSNAIMDLIESRWEELVGEMPIKVCYPAIESHDWRII-------TGCDPKNTRW 452
           S  TEE+    +  IE++++E+  + P KV +   E H+  +          C+ + T W
Sbjct: 5   SSGTEER----LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60

Query: 453 SYH 455
           SYH
Sbjct: 61  SYH 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,479,889
Number of Sequences: 62578
Number of extensions: 733078
Number of successful extensions: 1532
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1532
Number of HSP's gapped (non-prelim): 2
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)