Query 048483
Match_columns 99
No_of_seqs 105 out of 623
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 67.1 11 0.00039 24.2 4.9 63 25-90 5-72 (107)
2 2vkp_A BTB/POZ domain-containi 62.3 15 0.00052 22.4 4.7 58 28-89 11-73 (109)
3 2nz0_B Potassium voltage-gated 57.4 5.7 0.00019 27.5 2.1 64 23-90 32-97 (140)
4 2al3_A TUG long isoform; TUG U 55.9 9.7 0.00033 25.0 3.0 43 26-70 9-52 (90)
5 2vpk_A Myoneurin; transcriptio 51.3 22 0.00074 22.1 4.1 53 28-89 25-82 (116)
6 1vd2_A Protein kinase C, IOTA 50.3 21 0.00071 23.1 3.9 38 31-72 12-49 (89)
7 1s1g_A Potassium voltage-gated 49.6 7.7 0.00026 26.1 1.8 63 24-90 11-75 (124)
8 1r29_A B-cell lymphoma 6 prote 47.4 24 0.00082 22.3 3.8 56 28-89 32-91 (127)
9 3ga1_A Nucleus accumbens-assoc 46.5 42 0.0014 21.3 4.9 52 28-88 36-91 (129)
10 1und_A Advillin, P92; actin bi 46.5 5.5 0.00019 22.2 0.5 19 44-62 1-19 (37)
11 3n5b_B ASR0485 protein; PII, P 36.4 4.2 0.00015 28.0 -1.2 29 19-55 11-39 (112)
12 2if5_A Zinc finger and BTB dom 36.4 66 0.0022 19.8 4.6 57 28-89 28-87 (120)
13 2xko_C PIPX, global nitrogen r 35.8 3.9 0.00013 27.2 -1.5 11 44-54 5-15 (89)
14 1y74_B MLIN-2/CASK, peripheral 34.1 12 0.0004 21.3 0.6 20 44-63 26-49 (50)
15 3drx_A BTB/POZ domain-containi 30.2 45 0.0015 24.5 3.4 64 24-90 10-78 (202)
16 3b84_A Zinc finger and BTB dom 29.4 79 0.0027 19.7 4.1 53 28-89 27-82 (119)
17 1oey_J P40-PHOX, neutrophil cy 29.3 1.3E+02 0.0046 20.3 5.5 63 35-97 19-90 (107)
18 3htm_A Speckle-type POZ protei 29.0 74 0.0025 20.6 4.0 58 28-90 37-97 (172)
19 3ohu_A Transcription regulator 27.5 56 0.0019 20.4 3.1 55 28-89 35-93 (125)
20 3pmi_A PWWP domain-containing 27.5 19 0.00064 25.4 0.8 29 35-63 47-78 (134)
21 1zav_U 50S ribosomal protein L 25.7 43 0.0015 17.6 1.9 13 51-63 18-30 (30)
22 1yu8_X Villin; alpha helix, 3- 24.2 20 0.00068 22.3 0.4 19 44-62 31-49 (67)
23 1j26_A Immature colon carcinom 24.2 53 0.0018 21.9 2.6 39 36-76 45-84 (112)
24 1e2b_A Enzyme IIB-cellobiose; 23.1 26 0.00088 22.6 0.8 16 1-16 1-17 (106)
25 3fkc_A Transcriptional regulat 23.1 1.2E+02 0.004 18.9 4.1 53 28-90 34-89 (116)
26 2q81_A MIZ-1 protein; BTB/POZ 23.0 1E+02 0.0036 19.1 3.8 52 28-89 30-84 (119)
27 2jtq_A Phage shock protein E; 22.8 46 0.0016 19.4 1.9 15 62-76 36-50 (85)
28 3qli_A Coenzyme A transferase; 22.0 50 0.0017 26.9 2.5 44 20-64 401-454 (455)
29 1qzp_A Dematin; villin headpie 21.4 17 0.0006 22.5 -0.3 19 44-62 32-50 (68)
30 1buo_A POZ domain, protein (pr 21.3 1.2E+02 0.004 18.9 3.7 53 28-90 31-86 (121)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=67.12 E-value=11 Score=24.19 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCeEEEEEcCccC-cH--HHHHHHHHHHHhcC--ccCCCcEEeccCHHHHHHHHHHhCCCC
Q 048483 25 KGHVVVYVGEECKRFVIKVSLLE-HP--LFKALLDRAEEAFE--FATGSKLRIPCNESIFRSILYFASPQR 90 (99)
Q Consensus 25 kG~~~VYVG~e~kRfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~~~~~~~ 90 (99)
...+.+-|| .++|.+..+-|. +| .|..|.... .++. .+.+|.+-|..+...|++||.-++.+.
T Consensus 5 ~~~v~LNVG--G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEET--TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEC--CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 456788899 689999987775 33 566664321 1232 345789999999999999999887664
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=62.28 E-value=15 Score=22.38 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=40.7
Q ss_pred EEEEEcC--CCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEec-cCHHHHHHHHHHhCCC
Q 048483 28 VVVYVGE--ECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIP-CNESIFRSILYFASPQ 89 (99)
Q Consensus 28 ~~VYVG~--e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~~~~~ 89 (99)
+.+.||+ +.++|-+.-..| ..|.|++++...-.|- . ..|.|| .+...|+.+|..+=++
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~ 73 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSD 73 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCC
Confidence 4566764 358899888888 6899999997543332 2 678997 6999999999876544
No 3
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=57.36 E-value=5.7 Score=27.46 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=46.0
Q ss_pred CCCCeEEEEEcCCCeEEEEEcCcc-CcHHHHHHHHHHHHhcCc-cCCCcEEeccCHHHHHHHHHHhCCCC
Q 048483 23 VPKGHVVVYVGEECKRFVIKVSLL-EHPLFKALLDRAEEAFEF-ATGSKLRIPCNESIFRSILYFASPQR 90 (99)
Q Consensus 23 vpkG~~~VYVG~e~kRfvVp~~~L-~hP~F~~LL~~aeeEfG~-~~~G~L~IPC~~~~Fe~vl~~~~~~~ 90 (99)
.....+.+-|| .+||.+..+-| ++|- .+|..++...-+ +.+|.+-|..+...|++||.-++++.
T Consensus 32 ~~~~~V~LNVG--G~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 32 RQDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp TCCCEEEEEET--TEEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEEEC--CEEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 35678888999 69999988765 2331 234444443334 35699999999999999999988764
No 4
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=55.91 E-value=9.7 Score=24.99 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCeEEEEEcCccCcHHHHHHHHHHHHhcCccCC-CcE
Q 048483 26 GHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATG-SKL 70 (99)
Q Consensus 26 G~~~VYVG~e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~~~-G~L 70 (99)
|--++++..+.+|+.|++. ..-.+.++|++|-+.||++.+ ..|
T Consensus 9 ~m~v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp -CCEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred ccEEEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeE
Confidence 4445666667899999984 344788999999999999753 344
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=51.32 E-value=22 Score=22.11 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=39.9
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEec---cCHHHHHHHHHHhCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIP---CNESIFRSILYFASPQ 89 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IP---C~~~~Fe~vl~~~~~~ 89 (99)
+.+.|| .++|-+.-..| ..|.|++++... .+..++|+ .+...|+.+|.-+=++
T Consensus 25 v~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~ 82 (116)
T 2vpk_A 25 CTIVIG--EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTG 82 (116)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred EEEEEC--CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCC
Confidence 456676 46888877777 579999998654 35678888 7899999999876544
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=50.26 E-value=21 Score=23.11 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=28.1
Q ss_pred EEcCCCeEEEEEcCccCcHHHHHHHHHHHHhcCccCCCcEEe
Q 048483 31 YVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRI 72 (99)
Q Consensus 31 YVG~e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~~~G~L~I 72 (99)
|-..+..|+-||.+ ..|++|.++-.+-|++..+.++++
T Consensus 12 ~~~gdi~~~~v~~~----i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 12 YYRGDIMITHFEPS----ISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp ESSSCEEEEEECTT----CCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred EeCCeEEEEECCCC----CCHHHHHHHHHHHhCCCCCCeEEE
Confidence 33457889999884 589999999999999864444443
No 7
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=49.62 E-value=7.7 Score=26.14 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=45.0
Q ss_pred CCCeEEEEEcCCCeEEEEEcCccC-cHHHHHHHHHHHHhcCc-cCCCcEEeccCHHHHHHHHHHhCCCC
Q 048483 24 PKGHVVVYVGEECKRFVIKVSLLE-HPLFKALLDRAEEAFEF-ATGSKLRIPCNESIFRSILYFASPQR 90 (99)
Q Consensus 24 pkG~~~VYVG~e~kRfvVp~~~L~-hP~F~~LL~~aeeEfG~-~~~G~L~IPC~~~~Fe~vl~~~~~~~ 90 (99)
....+.+-|| .+||.+..+-|. +|- .+|..++...-+ +.+|.+-|..+...|++||.-++++.
T Consensus 11 ~~~~V~LNVG--G~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 11 QDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp -CCEEEEEET--TEEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeC--CEEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 4567888899 699999887664 231 234334433333 34699999999999999999988764
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=47.39 E-value=24 Score=22.27 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=42.2
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEe-c-cCHHHHHHHHHHhCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRI-P-CNESIFRSILYFASPQ 89 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~I-P-C~~~~Fe~vl~~~~~~ 89 (99)
+.+.|| .++|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.+|.-+=++
T Consensus 32 v~l~v~--~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg 91 (127)
T 1r29_A 32 VVIVVS--REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTS 91 (127)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred EEEEEC--CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCC
Confidence 456676 46788877777 689999999765444 4578999 4 7899999999876544
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=46.49 E-value=42 Score=21.28 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=39.7
Q ss_pred EEEEEcCCCeEEEEEcCccC--cHHHHHHHHHHHHhcCccCCCcEEec--cCHHHHHHHHHHhCC
Q 048483 28 VVVYVGEECKRFVIKVSLLE--HPLFKALLDRAEEAFEFATGSKLRIP--CNESIFRSILYFASP 88 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~~~~ 88 (99)
+.+.|| .++|-+.-..|. .|.|++++... ....|.|| .+...|+.+|..+=+
T Consensus 36 v~l~v~--~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYt 91 (129)
T 3ga1_A 36 VSVVVK--GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYT 91 (129)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEC--CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhC
Confidence 466676 477777766665 69999999875 45789996 899999999987543
No 10
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=46.48 E-value=5.5 Score=22.20 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=16.8
Q ss_pred CccCcHHHHHHHHHHHHhc
Q 048483 44 SLLEHPLFKALLDRAEEAF 62 (99)
Q Consensus 44 ~~L~hP~F~~LL~~aeeEf 62 (99)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999987
No 11
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=36.39 E-value=4.2 Score=27.98 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=9.6
Q ss_pred CCCCCCCCeEEEEEcCCCeEEEEEcCccCcHHHHHHH
Q 048483 19 IPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALL 55 (99)
Q Consensus 19 ~~~~vpkG~~~VYVG~e~kRfvVp~~~L~hP~F~~LL 55 (99)
++.-||+|..--=+..| .|||||.|.-|-
T Consensus 11 ~~~~~~~~~~~~~ms~E--------~YLNHPTFGLLy 39 (112)
T 3n5b_B 11 SSGLVPRGSHMNPENSE--------TYINHPTWGLLY 39 (112)
T ss_dssp ---------------CC--------CEEEETTTEEEE
T ss_pred cCCcccCCccCCCcchh--------hhccCCccchhe
Confidence 34457777543222222 399999986553
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=36.35 E-value=66 Score=19.85 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=39.7
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEec-cCHHHHHHHHHHhCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIP-CNESIFRSILYFASPQ 89 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~~~~~ 89 (99)
+.+.|| .++|-+.-..| ..|.|++++...-.| .....|.|+ .+...|+.+|..+=++
T Consensus 28 v~l~v~--~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~ 87 (120)
T 2if5_A 28 VVILVE--GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTA 87 (120)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHS
T ss_pred eEEEEC--CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCC
Confidence 456676 47888877777 479999999754333 235678998 6899999999876544
No 13
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=35.84 E-value=3.9 Score=27.17 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.7
Q ss_pred CccCcHHHHHH
Q 048483 44 SLLEHPLFKAL 54 (99)
Q Consensus 44 ~~L~hP~F~~L 54 (99)
.|||||.|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998654
No 14
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=34.08 E-value=12 Score=21.26 Aligned_cols=20 Identities=40% Similarity=0.698 Sum_probs=14.7
Q ss_pred CccCcHHHHHHHHH----HHHhcC
Q 048483 44 SLLEHPLFKALLDR----AEEAFE 63 (99)
Q Consensus 44 ~~L~hP~F~~LL~~----aeeEfG 63 (99)
..|+.|.||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46889999999973 445553
No 15
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=30.16 E-value=45 Score=24.51 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=46.0
Q ss_pred CCCeEEEEEcCCCeEEEEEcCccC-cH--HHHHHHHHHHHhcC--ccCCCcEEeccCHHHHHHHHHHhCCCC
Q 048483 24 PKGHVVVYVGEECKRFVIKVSLLE-HP--LFKALLDRAEEAFE--FATGSKLRIPCNESIFRSILYFASPQR 90 (99)
Q Consensus 24 pkG~~~VYVG~e~kRfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~~~~~~~ 90 (99)
+...+.+-|| .+||.+..+-|. +| .|..|... ..++. .+.+|.+-|..+...|++||.-++.+.
T Consensus 10 ~~~~V~LNVG--G~~F~Tt~sTL~r~PdS~L~~lfs~-~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 10 VSKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CCCEEEEEET--TEEEEEETTGGGSCTTSSTHHHHSC-CCC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CCCEEEEEEC--CEEEEEeHHHHhCCCcchHHHHhcC-ccccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 4567888999 599999988775 34 45555321 11232 345799999999999999999888664
No 16
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=29.39 E-value=79 Score=19.67 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=38.7
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEec-cCHHHHHHHHHHhCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIP-CNESIFRSILYFASPQ 89 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~~~~~ 89 (99)
+.+.|| .++|-+.-..| ..|.|++++.... .+.|.|| -+...|+.+|.-+=++
T Consensus 27 v~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~~~~~~f~~ll~~iYtg 82 (119)
T 3b84_A 27 ATLDVG--GLVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPAGFAEIFGLLLDFFYTG 82 (119)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECGGGHHHHHHHHHHHHHS
T ss_pred eEEEEC--CEEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCCCCHHHHHHHHHHHcCC
Confidence 455676 37787777777 4799999986521 5789998 6788999999876544
No 17
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=29.32 E-value=1.3e+02 Score=20.28 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=42.6
Q ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHhcCcc--------CCCcEEeccCHHHHHHHHHHhCCC-CCCCcccc
Q 048483 35 ECKRFVIKVSLLEHPLFKALLDRAEEAFEFA--------TGSKLRIPCNESIFRSILYFASPQ-RDRSWFPF 97 (99)
Q Consensus 35 e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~--------~~G~L~IPC~~~~Fe~vl~~~~~~-~~~~~~~~ 97 (99)
..+-..|.-+.-..|.|.+||.+-..+|.=+ .+|-|.===+-+...-++...+.. ...+.|||
T Consensus 19 ~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~eGDLIrilddeDv~lmi~~sr~~~s~k~~FPW 90 (107)
T 1oey_J 19 TIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPW 90 (107)
T ss_dssp EEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSCEEECCSHHHHHHHHHHCCCCCCTTCBCSS
T ss_pred eeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCCCCEEEEcchHHHHHHHHHhhcCcccccccce
Confidence 3566777788889999999999999998622 245544334555556666665433 34667887
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=28.96 E-value=74 Score=20.61 Aligned_cols=58 Identities=17% Similarity=0.454 Sum_probs=41.9
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEec-cCHHHHHHHHHHhCCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIP-CNESIFRSILYFASPQR 90 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~~~~~~ 90 (99)
+.+.|| .++|-+.-..| ..|.|+.++...-.| .....|.|| -+...|+.+|..+-+++
T Consensus 37 v~l~v~--~~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~Yt~~ 97 (172)
T 3htm_A 37 CCLCVA--GQEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFIYTGK 97 (172)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred eEEEEC--CEEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 567776 46788887777 469999999843212 234689998 68999999998765443
No 19
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=27.55 E-value=56 Score=20.40 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=40.3
Q ss_pred EEEEEcCCCeEEEEEcCccC--cHHHHHHHHHHHHhcCccCCCcEEec--cCHHHHHHHHHHhCCC
Q 048483 28 VVVYVGEECKRFVIKVSLLE--HPLFKALLDRAEEAFEFATGSKLRIP--CNESIFRSILYFASPQ 89 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~~~~~~ 89 (99)
+.+.|| .++|-+.-..|. .|.|++++..... .+..|.|| .+...|+.+|..+=++
T Consensus 35 v~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~~~~-----e~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 35 VTLIVE--RKEFRAHRAVLAACSEYFWQALVGQTK-----NDLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHTTCCC-----SSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred eEEEEC--CEEEechHHHHHHcCHHHHHHhcCCCC-----CCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 456676 467777766665 6999999875432 25678887 7999999999887654
No 20
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=27.52 E-value=19 Score=25.43 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=25.5
Q ss_pred CCeEEEEEcCccCc---HHHHHHHHHHHHhcC
Q 048483 35 ECKRFVIKVSLLEH---PLFKALLDRAEEAFE 63 (99)
Q Consensus 35 e~kRfvVp~~~L~h---P~F~~LL~~aeeEfG 63 (99)
+++=|-||+.-|+| -.-|+|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 57889999999988 467999999999987
No 21
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=25.67 E-value=43 Score=17.61 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcC
Q 048483 51 FKALLDRAEEAFE 63 (99)
Q Consensus 51 F~~LL~~aeeEfG 63 (99)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899997
No 22
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=24.23 E-value=20 Score=22.28 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.9
Q ss_pred CccCcHHHHHHHHHHHHhc
Q 048483 44 SLLEHPLFKALLDRAEEAF 62 (99)
Q Consensus 44 ~~L~hP~F~~LL~~aeeEf 62 (99)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999997
No 23
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=24.18 E-value=53 Score=21.94 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=29.0
Q ss_pred CeEEEEEc-CccCcHHHHHHHHHHHHhcCccCCCcEEeccCH
Q 048483 36 CKRFVIKV-SLLEHPLFKALLDRAEEAFEFATGSKLRIPCNE 76 (99)
Q Consensus 36 ~kRfvVp~-~~L~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~ 76 (99)
+=||-||. ..|.-..-..|++++.-- ...+|.|+|-|+.
T Consensus 45 ~Lrf~i~t~~~Lp~~~k~rl~~~~~~r--i~~~G~ivv~~q~ 84 (112)
T 1j26_A 45 EVRFHLASADWIEEPVRQKIALTHKNK--INKAGELVLTSES 84 (112)
T ss_dssp EEEEEGGGCTTSCHHHHHHHHHHTTTT--BCSSSEEEEEECC
T ss_pred EEEEeccccccCCHHHHHHHHHhhccc--cccCCeEEEEECC
Confidence 34788888 488888888888774332 3568999999974
No 24
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.15 E-value=26 Score=22.56 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=10.9
Q ss_pred CCCCc-eeeecCCCCCC
Q 048483 1 MEESK-IWCCFKGTDEE 16 (99)
Q Consensus 1 ~~~~~-~~c~~~~~~~~ 16 (99)
|+.+| +.||++|..++
T Consensus 1 M~mkkIll~Cg~G~sTS 17 (106)
T 1e2b_A 1 MEKKHIYLFSSAGMSTS 17 (106)
T ss_dssp CCCEEEEEECSSSTTTH
T ss_pred CCCcEEEEECCCchhHH
Confidence 55554 48999987654
No 25
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=23.14 E-value=1.2e+02 Score=18.91 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=39.0
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEec-cCHHHHHHHHHHhCCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIP-CNESIFRSILYFASPQR 90 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~~~~~~ 90 (99)
+.+.|| .++|-+.-..| ..|.|++++... ...|.|+ .+...|+.+|..+=+++
T Consensus 34 v~l~v~--~~~f~aHk~vLaa~S~~F~~~f~~~--------~~~i~l~~~~~~~f~~~l~~~Ytg~ 89 (116)
T 3fkc_A 34 VTVIVE--DRKFRAHKNILSASSTYFHQLFSVA--------GQVVELSFIRAEIFAEILNYIYSSK 89 (116)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECSSCHHHHHHHHHHHTTSC
T ss_pred EEEEEC--CEEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCCCCHHHHHHHHHhhcCCC
Confidence 456676 36777766665 458898888642 4678887 89999999998877664
No 26
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=22.99 E-value=1e+02 Score=19.07 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=38.2
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEecc-CHHHHHHHHHHhCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIPC-NESIFRSILYFASPQ 89 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IPC-~~~~Fe~vl~~~~~~ 89 (99)
+.+.|| .++|-+.-..| ..|.|++++.. +...|.|+- +...|+.+|.-+=++
T Consensus 30 v~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg 84 (119)
T 2q81_A 30 CTFVVD--GVHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTA 84 (119)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHS
T ss_pred eEEEEC--CEEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCC
Confidence 456676 47888887777 47999999975 245677774 788999999876544
No 27
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=22.82 E-value=46 Score=19.39 Aligned_cols=15 Identities=13% Similarity=0.281 Sum_probs=8.0
Q ss_pred cCccCCCcEEeccCH
Q 048483 62 FEFATGSKLRIPCNE 76 (99)
Q Consensus 62 fG~~~~G~L~IPC~~ 76 (99)
.+-+.+.+|.+=|..
T Consensus 36 l~~~~~~~ivv~C~~ 50 (85)
T 2jtq_A 36 AVPDKNDTVKVYCNA 50 (85)
T ss_dssp HCCCTTSEEEEEESS
T ss_pred hCCCCCCcEEEEcCC
Confidence 344445566666654
No 28
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=21.99 E-value=50 Score=26.94 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEEEcC---------C-CeEEEEEcCccCcHHHHHHHHHHHHhcCc
Q 048483 20 PKDVPKGHVVVYVGE---------E-CKRFVIKVSLLEHPLFKALLDRAEEAFEF 64 (99)
Q Consensus 20 ~~~vpkG~~~VYVG~---------e-~kRfvVp~~~L~hP~F~~LL~~aeeEfG~ 64 (99)
+...|++.+-+.|-| . ++|-.-=++ +.||-||+.|.+.+++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 334577777666632 1 223222224 8999999999988888764
No 29
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.44 E-value=17 Score=22.47 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=17.7
Q ss_pred CccCcHHHHHHHHHHHHhc
Q 048483 44 SLLEHPLFKALLDRAEEAF 62 (99)
Q Consensus 44 ~~L~hP~F~~LL~~aeeEf 62 (99)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999987
No 30
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=21.29 E-value=1.2e+02 Score=18.85 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=38.4
Q ss_pred EEEEEcCCCeEEEEEcCcc--CcHHHHHHHHHHHHhcCccCCCcEEec-cCHHHHHHHHHHhCCCC
Q 048483 28 VVVYVGEECKRFVIKVSLL--EHPLFKALLDRAEEAFEFATGSKLRIP-CNESIFRSILYFASPQR 90 (99)
Q Consensus 28 ~~VYVG~e~kRfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~~~~~~~ 90 (99)
+.+.|| .++|-+.-..| ..|.|++++.. ....|.|+ -+...|+.+|.-+=+++
T Consensus 31 v~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~ 86 (121)
T 1buo_A 31 VVIMVD--SQEFHAHRTVLACTSKMFEILFHR--------NSQHYTLDFLSPKTFQQILEYAYTAT 86 (121)
T ss_dssp EEEEES--SCEEEECHHHHHHHCHHHHHHTTS--------CCSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred EEEEEC--CEEEehhHHHHhhcCHHHHHHHcC--------CCcEEEeCCCCHHHHHHHHHhhcCCC
Confidence 456676 46777777766 67999998853 24578888 78999999998765443
Done!