Query 048488
Match_columns 109
No_of_seqs 107 out of 208
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1.6E-41 3.5E-46 275.2 8.7 109 1-109 49-158 (408)
2 PF03547 Mem_trans: Membrane t 99.6 2.5E-16 5.4E-21 125.0 6.9 84 1-84 36-120 (385)
3 COG0679 Predicted permeases [G 98.7 1.1E-08 2.3E-13 81.1 4.3 83 1-84 39-122 (311)
4 TIGR00946 2a69 he Auxin Efflux 98.6 7.8E-08 1.7E-12 75.7 4.7 86 1-86 41-128 (321)
5 PRK09903 putative transporter 98.2 2E-06 4.3E-11 67.9 5.3 84 1-85 39-124 (314)
6 TIGR00832 acr3 arsenical-resis 95.6 0.03 6.6E-07 45.0 5.7 48 30-77 248-297 (328)
7 TIGR00841 bass bile acid trans 94.8 0.072 1.6E-06 41.8 5.5 49 28-76 195-245 (286)
8 COG0385 Predicted Na+-dependen 94.5 0.13 2.9E-06 41.8 6.5 50 29-78 224-275 (319)
9 PF13593 DUF4137: SBF-like CPA 86.6 3.4 7.5E-05 33.0 7.0 48 30-77 228-277 (313)
10 COG0385 Predicted Na+-dependen 74.7 5.9 0.00013 32.4 4.5 61 8-68 44-108 (319)
11 PF03601 Cons_hypoth698: Conse 70.9 7 0.00015 31.4 4.1 48 15-62 69-118 (305)
12 PRK11677 hypothetical protein; 69.5 6.7 0.00014 28.2 3.3 25 28-55 3-27 (134)
13 PF05145 AmoA: Putative ammoni 67.8 20 0.00044 28.7 6.1 49 10-58 33-85 (318)
14 PF05684 DUF819: Protein of un 65.5 23 0.0005 29.2 6.2 70 11-84 276-346 (378)
15 TIGR02185 Trep_Strep conserved 64.2 11 0.00025 28.0 3.8 36 23-60 154-189 (189)
16 KOG2718 Na+-bile acid cotransp 64.0 15 0.00033 30.6 4.9 64 6-69 115-185 (371)
17 PF09605 Trep_Strep: Hypotheti 62.5 13 0.00028 27.6 3.8 36 23-60 151-186 (186)
18 PF12534 DUF3733: Leucine-rich 61.7 13 0.00027 23.8 3.1 44 17-60 13-61 (65)
19 PF07219 HemY_N: HemY protein 60.6 10 0.00022 25.5 2.8 36 26-61 15-50 (108)
20 TIGR03082 Gneg_AbrB_dup membra 59.8 47 0.001 23.7 6.3 48 11-58 56-107 (156)
21 PF06295 DUF1043: Protein of u 59.0 12 0.00027 26.2 3.0 22 34-55 2-23 (128)
22 TIGR00698 conserved hypothetic 57.4 23 0.0005 28.9 4.8 48 15-62 75-124 (335)
23 PRK10747 putative protoheme IX 55.1 18 0.00039 29.3 3.8 36 26-61 40-75 (398)
24 PF06305 DUF1049: Protein of u 55.0 8.6 0.00019 23.4 1.5 25 29-53 19-43 (68)
25 COG3180 AbrB Putative ammonia 54.3 43 0.00092 27.9 5.8 49 10-58 66-118 (352)
26 TIGR00540 hemY_coli hemY prote 54.2 14 0.0003 30.0 3.0 36 26-61 40-75 (409)
27 TIGR00210 gltS sodium--glutama 50.1 46 0.001 27.8 5.5 65 19-86 294-365 (398)
28 PF11120 DUF2636: Protein of u 48.5 38 0.00083 21.4 3.7 28 20-53 2-29 (62)
29 TIGR00841 bass bile acid trans 47.3 49 0.0011 25.8 5.1 59 11-69 17-79 (286)
30 COG3763 Uncharacterized protei 43.1 54 0.0012 21.3 3.9 24 27-50 3-26 (71)
31 PRK12460 2-keto-3-deoxyglucona 43.0 39 0.00085 27.6 4.0 60 14-86 57-118 (312)
32 COG1346 LrgB Putative effector 42.1 49 0.0011 26.0 4.2 42 20-61 82-124 (230)
33 PF01758 SBF: Sodium Bile acid 41.8 36 0.00078 24.7 3.3 55 12-66 8-67 (187)
34 COG2855 Predicted membrane pro 41.8 32 0.00068 28.4 3.3 48 15-62 79-127 (334)
35 PF06679 DUF1180: Protein of u 40.5 39 0.00084 25.1 3.3 41 34-75 99-144 (163)
36 PRK01844 hypothetical protein; 39.6 66 0.0014 20.9 3.9 24 27-50 3-26 (72)
37 COG3071 HemY Uncharacterized e 39.5 34 0.00074 29.0 3.1 38 26-63 40-77 (400)
38 TIGR00793 kdgT 2-keto-3-deoxyg 39.1 57 0.0012 26.8 4.3 42 37-86 81-123 (314)
39 PRK12460 2-keto-3-deoxyglucona 39.0 65 0.0014 26.4 4.6 64 13-78 203-268 (312)
40 KOG2262 Sexual differentiation 38.3 8.4 0.00018 34.8 -0.6 66 13-85 432-499 (761)
41 COG2976 Uncharacterized protei 37.1 38 0.00083 26.2 2.9 30 20-49 10-42 (207)
42 PF05145 AmoA: Putative ammoni 36.8 1.4E+02 0.003 23.9 6.2 48 11-58 213-264 (318)
43 PF06522 B12D: NADH-ubiquinone 34.7 62 0.0013 20.5 3.2 27 29-55 6-32 (73)
44 PF05957 DUF883: Bacterial pro 34.0 42 0.0009 21.9 2.4 17 34-50 77-93 (94)
45 COG0798 ACR3 Arsenite efflux p 33.8 1.8E+02 0.0038 24.3 6.4 68 10-80 230-299 (342)
46 COG3105 Uncharacterized protei 33.3 75 0.0016 23.1 3.7 27 26-55 6-32 (138)
47 PF09512 ThiW: Thiamine-precur 32.3 1E+02 0.0022 22.7 4.4 42 11-53 107-148 (150)
48 PRK11283 gltP glutamate/aspart 31.8 99 0.0021 26.0 4.8 48 10-57 59-111 (437)
49 PRK04288 antiholin-like protei 31.4 88 0.0019 24.5 4.1 40 21-60 86-126 (232)
50 COG2991 Uncharacterized protei 31.1 50 0.0011 21.7 2.3 38 27-72 3-40 (77)
51 PF09964 DUF2198: Uncharacteri 30.5 1.2E+02 0.0026 19.9 4.0 17 38-54 53-69 (74)
52 COG3771 Predicted membrane pro 29.9 33 0.0007 23.5 1.3 23 36-58 47-69 (97)
53 PF03672 UPF0154: Uncharacteri 29.9 61 0.0013 20.6 2.5 17 34-50 3-19 (64)
54 PF12072 DUF3552: Domain of un 27.0 80 0.0017 23.5 3.2 20 32-51 4-23 (201)
55 PF05552 TM_helix: Conserved T 26.2 1.3E+02 0.0028 17.6 3.4 30 23-52 10-39 (53)
56 TIGR00832 acr3 arsenical-resis 25.3 1.3E+02 0.0029 24.1 4.3 53 11-63 52-109 (328)
57 TIGR00123 cbiM cobalamin biosy 24.5 75 0.0016 24.2 2.6 55 27-81 105-162 (214)
58 PRK10711 hypothetical protein; 24.1 1.4E+02 0.0031 23.3 4.1 42 21-62 81-123 (231)
59 PRK13027 C4-dicarboxylate tran 23.9 1.4E+02 0.0031 24.9 4.4 48 9-56 50-102 (421)
60 cd01033 ClC_like Putative ClC 23.9 28 0.00061 28.4 0.2 37 40-76 111-151 (388)
61 TIGR02002 PTS-II-BC-glcB PTS s 23.9 2.4E+02 0.0052 24.2 5.8 69 27-98 380-450 (502)
62 PRK00523 hypothetical protein; 23.5 1.8E+02 0.0039 18.9 3.9 21 30-50 7-27 (72)
63 PF00375 SDF: Sodium:dicarboxy 23.3 2E+02 0.0043 23.4 5.0 47 9-55 45-96 (390)
64 TIGR03147 cyt_nit_nrfF cytochr 21.6 1.4E+02 0.003 21.3 3.3 10 27-36 104-113 (126)
65 PF07343 DUF1475: Protein of u 20.6 1.2E+02 0.0026 24.2 3.1 61 27-91 77-164 (254)
66 PF06826 Asp-Al_Ex: Predicted 20.4 2.8E+02 0.006 20.4 4.9 33 30-62 86-119 (169)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=275.21 Aligned_cols=109 Identities=36% Similarity=0.831 Sum_probs=107.6
Q ss_pred CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHH
Q 048488 1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAP 79 (109)
Q Consensus 1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~ 79 (109)
++|++|+|||+|+|||+++|.|++.+|||||+|+++++++|.++||+++|++|+|+++|+++++||+|||+| ||+++++
T Consensus 49 Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~ 128 (408)
T KOG2722|consen 49 LVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVP 128 (408)
T ss_pred eeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHhhhcCCCCCCCchhhhhhhHHHhhhccC
Q 048488 80 AVCEMSNSPFGDSSACSSDGETCALLSMAL 109 (109)
Q Consensus 80 sl~~~~~~pf~~~~~~~~~G~aYi~~~~~~ 109 (109)
|+|+++++|||++|+|++||++|++++||+
T Consensus 129 alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~l 158 (408)
T KOG2722|consen 129 ALCDEDGIPFGNREKCASRGISYVSFSQQL 158 (408)
T ss_pred HHhcccCCCCCChhhhhhcchhHHHHHHHh
Confidence 999999999999999999999999999985
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.65 E-value=2.5e-16 Score=125.01 Aligned_cols=84 Identities=37% Similarity=0.536 Sum_probs=81.4
Q ss_pred CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHH
Q 048488 1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAP 79 (109)
Q Consensus 1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~ 79 (109)
+++++++|||+|++++++.+.+++.++|++++...+.++++.+++|++.|++|.|+++|+.+..+++++|.| +|+.+++
T Consensus 36 lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~ 115 (385)
T PF03547_consen 36 LVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQ 115 (385)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHhhh
Q 048488 80 AVCEM 84 (109)
Q Consensus 80 sl~~~ 84 (109)
+++++
T Consensus 116 ~l~g~ 120 (385)
T PF03547_consen 116 ALFGE 120 (385)
T ss_pred HHhcc
Confidence 99877
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=98.73 E-value=1.1e-08 Score=81.13 Aligned_cols=83 Identities=19% Similarity=0.105 Sum_probs=69.6
Q ss_pred CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHH
Q 048488 1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAP 79 (109)
Q Consensus 1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~ 79 (109)
+++++.+|||+|++++++-.-++ +++..++...+.+...+....++..|.+|.+++++.....+++|+|+| +++.+..
T Consensus 39 lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~ 117 (311)
T COG0679 39 LVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVAL 117 (311)
T ss_pred HHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHH
Confidence 36889999999999999954444 777778888888888888888888889999999999999999999999 9877766
Q ss_pred HHhhh
Q 048488 80 AVCEM 84 (109)
Q Consensus 80 sl~~~ 84 (109)
++=+|
T Consensus 118 ~~~G~ 122 (311)
T COG0679 118 SLFGE 122 (311)
T ss_pred HHcCc
Confidence 66333
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=98.56 E-value=7.8e-08 Score=75.71 Aligned_cols=86 Identities=10% Similarity=-0.044 Sum_probs=65.6
Q ss_pred CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCccceeeecccCCch-hHHHHH
Q 048488 1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIK-LTRTPPHLYSLVVSCCSSGNYL-FLLVIA 78 (109)
Q Consensus 1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~-i~~~p~~~r~~~~~~~~fgN~g-LPl~lv 78 (109)
+++++.+||++|+++++.-..++....+...+.....+.+.++++|.+.| .+|.+++.|+....++.++|.| +-+-++
T Consensus 41 ~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~ 120 (321)
T TIGR00946 41 FVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLL 120 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHH
Confidence 36889999999999998633323333333334445566778899999999 8899999999999999999999 777777
Q ss_pred HHHhhhcC
Q 048488 79 PAVCEMSN 86 (109)
Q Consensus 79 ~sl~~~~~ 86 (109)
+++-.|++
T Consensus 121 ~~~~G~~~ 128 (321)
T TIGR00946 121 LSLFGEEG 128 (321)
T ss_pred HHHhcccc
Confidence 77766655
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=98.23 E-value=2e-06 Score=67.87 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=63.4
Q ss_pred CeeeehhhHHHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCccceeeecccCCch-hHHHHH
Q 048488 1 LGFFVFNPAYMLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIK-LTRTPPHLYSLVVSCCSSGNYL-FLLVIA 78 (109)
Q Consensus 1 ~vf~~f~PaLvFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~-i~~~p~~~r~~~~~~~~fgN~g-LPl~lv 78 (109)
+++++.+||++|++++++ +.|+..+-|.+.+...+.+...++++|++.| ..|.+++.|+.....++++|.| +-+-++
T Consensus 39 lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~ 117 (314)
T PRK09903 39 LVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVL 117 (314)
T ss_pred HHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHH
Confidence 368899999999999975 5566653344566677777788888888875 6677777777888888999999 555577
Q ss_pred HHHhhhc
Q 048488 79 PAVCEMS 85 (109)
Q Consensus 79 ~sl~~~~ 85 (109)
+++-.++
T Consensus 118 ~~~~G~~ 124 (314)
T PRK09903 118 DPIYGDS 124 (314)
T ss_pred HHHcCch
Confidence 7775554
No 6
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.64 E-value=0.03 Score=45.04 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHH
Q 048488 30 IPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVI 77 (109)
Q Consensus 30 ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~l 77 (109)
+-...++.+.+++.+|+.++|.+|.+++.|+-+..+++..|.+ ++++.
T Consensus 248 ~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 248 IAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 3334667889999999999999999999999999999999999 77765
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.83 E-value=0.072 Score=41.85 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHH
Q 048488 28 WFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLV 76 (109)
Q Consensus 28 w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~ 76 (109)
|.+-+..++...+++.+||.++|.+|.+++.|+-+...++..|.+ ++++
T Consensus 195 ~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la 245 (286)
T TIGR00841 195 PLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIA 245 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHH
Confidence 334444667789999999999999999999999999999999999 4443
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.53 E-value=0.13 Score=41.83 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHHH
Q 048488 29 FIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVIA 78 (109)
Q Consensus 29 ~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~lv 78 (109)
.+-+...++..+|+.+||...|.++.+++.|+-+..|++..|.| .|++-.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~ 275 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAA 275 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHh
Confidence 46666778889999999999999999999999999999999998 766644
No 9
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=86.56 E-value=3.4 Score=33.01 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHH
Q 048488 30 IPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVI 77 (109)
Q Consensus 30 ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~l 77 (109)
+-...+....+...++|...|.+|.+++.|.-+..|++--|.. +|++-
T Consensus 228 ~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~ 277 (313)
T PF13593_consen 228 IVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLAS 277 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHH
Confidence 3333455667788899999999999999999999999998888 77754
No 10
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=74.67 E-value=5.9 Score=32.37 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=48.5
Q ss_pred hHHHHHhhhcccchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeeccc
Q 048488 8 PAYMLSSLSETVTVKSLVTLW----FIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSS 68 (109)
Q Consensus 8 PaLvFs~la~~lt~~~l~~~w----~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~f 68 (109)
.+++|-..+-++|.||.++.| ..-+....++.+-=++||++.+.++.|++...+++-.|.-
T Consensus 44 l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~ 108 (319)
T COG0385 44 LALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCC 108 (319)
T ss_pred HHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeC
Confidence 466888888899999988766 5556667778888899999999999999987776544443
No 11
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=70.89 E-value=7 Score=31.40 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=35.7
Q ss_pred hhcccchhhhhhhhH-HHHHHHHHHHHHHHHHHHHH-HHhCCCCCCccce
Q 048488 15 LSETVTVKSLVTLWF-IPVNILVSLIIGSSLALILI-KLTRTPPHLYSLV 62 (109)
Q Consensus 15 la~~lt~~~l~~~w~-ipv~~ll~~~ig~~lg~lv~-~i~~~p~~~r~~~ 62 (109)
++.+++.+++.+... .-+...+.......+++.+. |.+|+|++++-.+
T Consensus 69 lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Li 118 (305)
T PF03601_consen 69 LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILI 118 (305)
T ss_pred HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 677899999999986 23335555677777788788 9999998865543
No 12
>PRK11677 hypothetical protein; Provisional
Probab=69.51 E-value=6.7 Score=28.24 Aligned_cols=25 Identities=12% Similarity=0.507 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048488 28 WFIPVNILVSLIIGSSLALILIKLTRTP 55 (109)
Q Consensus 28 w~ipv~~ll~~~ig~~lg~lv~~i~~~p 55 (109)
|++++ +.+++|.++|+++.|.+...
T Consensus 3 W~~a~---i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYAL---IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhccch
Confidence 65554 77789999999999986544
No 13
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=67.80 E-value=20 Score=28.71 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=33.4
Q ss_pred HHHHhhhcccchhhhhhh---hH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 048488 10 YMLSSLSETVTVKSLVTL---WF-IPVNILVSLIIGSSLALILIKLTRTPPHL 58 (109)
Q Consensus 10 LvFs~la~~lt~~~l~~~---w~-ipv~~ll~~~ig~~lg~lv~~i~~~p~~~ 58 (109)
++-..++.++|.|.+.++ |. +-+..+.+..++...+|+..|..|.++..
T Consensus 33 ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~T 85 (318)
T PF05145_consen 33 ILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRAT 85 (318)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 355678888887766554 43 22223344488899999999999988554
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=65.52 E-value=23 Score=29.24 Aligned_cols=70 Identities=19% Similarity=0.083 Sum_probs=52.2
Q ss_pred HHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHHHHhhh
Q 048488 11 MLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAPAVCEM 84 (109)
Q Consensus 11 vFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~sl~~~ 84 (109)
.|..++..-+.+++.+-..+.+..++...+-..+-++++|++|.| ...+.-++-.|+| -+.+-..|-.++
T Consensus 276 ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~~kl~k~~----l~~~~vAS~AnIGGpaTA~a~A~a~~ 346 (378)
T PF05684_consen 276 FFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLILGKLFKID----LFELLVASNANIGGPATAPAVAAAKG 346 (378)
T ss_pred HHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHhhcccCCcchHHHHHHhcC
Confidence 567788888888888844455556666677888888999999998 5666777788888 777755555444
No 15
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=64.18 E-value=11 Score=27.99 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=25.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 048488 23 SLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYS 60 (109)
Q Consensus 23 ~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~ 60 (109)
+..+.|.+++..+.+.+.|.+=+++-.|++| ||++|
T Consensus 154 ~~~~~~~~~~~~~~t~v~~~iG~~iG~kllk--KHF~K 189 (189)
T TIGR02185 154 KYVSAIWAVIMIVLTAVAGIAGVLIGKKLLK--KHFEK 189 (189)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 3445688888788777777777777777775 56543
No 16
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=63.96 E-value=15 Score=30.58 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=48.5
Q ss_pred hhhHHHHHhhhcc--cchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ccceeeecccC
Q 048488 6 FNPAYMLSSLSET--VTVKSLVTLW----FIPVNILVSLIIGSSLALILIKLTRTPPHL-YSLVVSCCSSG 69 (109)
Q Consensus 6 f~PaLvFs~la~~--lt~~~l~~~w----~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~-r~~~~~~~~fg 69 (109)
+.|.+.+..++-- .+.|+.++.| .+-+.++..+.+.-.+|+.+.+.+..|+++ .+..+.+|..|
T Consensus 115 ~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p 185 (371)
T KOG2718|consen 115 FPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSP 185 (371)
T ss_pred cccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccC
Confidence 4455555555444 7899999888 444555666788888999999999999999 78888888765
No 17
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=62.55 E-value=13 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 048488 23 SLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYS 60 (109)
Q Consensus 23 ~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~ 60 (109)
+..+.|.+++..+++.+.+.+=+++-.|++| ||++|
T Consensus 151 ~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk--KHF~K 186 (186)
T PF09605_consen 151 SFFTPWMLIIIIIITFVGALLGALLGKKLLK--KHFEK 186 (186)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 6667788888777777777777777777765 66654
No 18
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=61.74 E-value=13 Score=23.78 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=31.6
Q ss_pred cccchhhhhhhh--HHHHHHHHHHHHHHHHHHHHH---HHhCCCCCCcc
Q 048488 17 ETVTVKSLVTLW--FIPVNILVSLIIGSSLALILI---KLTRTPPHLYS 60 (109)
Q Consensus 17 ~~lt~~~l~~~w--~ipv~~ll~~~ig~~lg~lv~---~i~~~p~~~r~ 60 (109)
++.+.+.++-|| ++|=-.+++..++.+.|-.-. |+.+.|.+..+
T Consensus 13 ~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~~~ 61 (65)
T PF12534_consen 13 NQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTSSK 61 (65)
T ss_pred hHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCcccc
Confidence 347889999999 888877788777777665433 55677766543
No 19
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=60.59 E-value=10 Score=25.54 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 048488 26 TLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSL 61 (109)
Q Consensus 26 ~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~ 61 (109)
++|+.-+..++.+++-+++-+++.++.+.|+..+++
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 456666667777788889999999999999876543
No 20
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=59.85 E-value=47 Score=23.72 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=33.4
Q ss_pred HHHhhhcccchhhhhh---hhH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 048488 11 MLSSLSETVTVKSLVT---LWF-IPVNILVSLIIGSSLALILIKLTRTPPHL 58 (109)
Q Consensus 11 vFs~la~~lt~~~l~~---~w~-ipv~~ll~~~ig~~lg~lv~~i~~~p~~~ 58 (109)
+-..++.++|.|++++ +|. .-+..+++..++...+|++.|..+.|...
T Consensus 56 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~t 107 (156)
T TIGR03082 56 IGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLT 107 (156)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4467788887766555 443 33444555688889999999999988543
No 21
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.04 E-value=12 Score=26.23 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 048488 34 ILVSLIIGSSLALILIKLTRTP 55 (109)
Q Consensus 34 ~ll~~~ig~~lg~lv~~i~~~p 55 (109)
+++.+++|.++|+++.|++.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4577888999999999987765
No 22
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=57.42 E-value=23 Score=28.93 Aligned_cols=48 Identities=8% Similarity=-0.049 Sum_probs=31.3
Q ss_pred hhcccchhhhhhhhHHHHHHHHHHH-HHHHHHHHHH-HHhCCCCCCccce
Q 048488 15 LSETVTVKSLVTLWFIPVNILVSLI-IGSSLALILI-KLTRTPPHLYSLV 62 (109)
Q Consensus 15 la~~lt~~~l~~~w~ipv~~ll~~~-ig~~lg~lv~-~i~~~p~~~r~~~ 62 (109)
++-+++.+++.+...-.+...+... .....++.+. |.+|.+|+++-.+
T Consensus 75 lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Li 124 (335)
T TIGR00698 75 YGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILL 124 (335)
T ss_pred HCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 5677899999998865554433333 3344445554 8999998866543
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=55.12 E-value=18 Score=29.29 Aligned_cols=36 Identities=8% Similarity=0.208 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 048488 26 TLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSL 61 (109)
Q Consensus 26 ~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~ 61 (109)
++|+.-+..++.+++.+++-|++.++++.|+..|++
T Consensus 40 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 75 (398)
T PRK10747 40 SVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGW 75 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 456666666666677778889999999999977665
No 24
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.96 E-value=8.6 Score=23.37 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 048488 29 FIPVNILVSLIIGSSLALILIKLTR 53 (109)
Q Consensus 29 ~ipv~~ll~~~ig~~lg~lv~~i~~ 53 (109)
.+.+.+++++++|+++||++....+
T Consensus 19 pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777899999998775543
No 25
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=54.29 E-value=43 Score=27.87 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=34.3
Q ss_pred HHHHhhhcccchhhh---hhhhHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCC
Q 048488 10 YMLSSLSETVTVKSL---VTLWFIPVNILVS-LIIGSSLALILIKLTRTPPHL 58 (109)
Q Consensus 10 LvFs~la~~lt~~~l---~~~w~ipv~~ll~-~~ig~~lg~lv~~i~~~p~~~ 58 (109)
.+--+++.++|.|++ ++.|++-+.+++. ..++..+||+..|.-+.|+..
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T 118 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT 118 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 345677888876655 5557655554444 478889999999998787544
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=54.20 E-value=14 Score=29.99 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 048488 26 TLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSL 61 (109)
Q Consensus 26 ~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~ 61 (109)
++|+.-+.+++.+++.+++-|++.++++.|...|++
T Consensus 40 s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~ 75 (409)
T TIGR00540 40 SITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGW 75 (409)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 456666666666677778889999999999776554
No 27
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=50.13 E-value=46 Score=27.78 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=39.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCCccceeeecccCCc-h-hHHHH--HHHHhhhcC
Q 048488 19 VTVKSLVTLWFIPVNILVSLIIGSSL---ALILIKLTRTPPHLYSLVVSCCSSGNY-L-FLLVI--APAVCEMSN 86 (109)
Q Consensus 19 lt~~~l~~~w~ipv~~ll~~~ig~~l---g~lv~~i~~~p~~~r~~~~~~~~fgN~-g-LPl~l--v~sl~~~~~ 86 (109)
+...++.++| .|+.+++..-+.... -|+.-|+ .+|++...+++++-+|-. | -|.++ ++|+|++-|
T Consensus 294 L~L~~l~~~a-~Plliil~~q~i~~~l~~~fv~fr~--mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg 365 (398)
T TIGR00210 294 LQLWELADLA-GPIALILLVQVMFMALYAIFVTFRL--MGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFG 365 (398)
T ss_pred CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHh--ccchHHHHHHhcccccccccchHHHHHHHHHHHhccC
Confidence 5667777765 455444433222222 2333333 457788888888887765 4 77655 599997754
No 28
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=48.53 E-value=38 Score=21.43 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=18.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 048488 20 TVKSLVTLWFIPVNILVSLIIGSSLALILIKLTR 53 (109)
Q Consensus 20 t~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~ 53 (109)
+.+|+.|+ ++++.++...+||+..+.++
T Consensus 2 ~i~DiiQi------i~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 2 NISDIIQI------IILCALIFFPLGYLARRWLP 29 (62)
T ss_pred CHHHHHHH------HHHHHHHHHhHHHHHHHHhH
Confidence 56778885 44556667778888776543
No 29
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=47.27 E-value=49 Score=25.84 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=42.8
Q ss_pred HHHhhhcccchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccC
Q 048488 11 MLSSLSETVTVKSLVTLW----FIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSG 69 (109)
Q Consensus 11 vFs~la~~lt~~~l~~~w----~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fg 69 (109)
+.-.++-+++.+++++.+ ..-...+..+++-=+++|.+.+.++.+++.+...+-.++.+
T Consensus 17 ~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P 79 (286)
T TIGR00841 17 IMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCP 79 (286)
T ss_pred HHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCC
Confidence 455677778999998865 34444455667777889999999999988877766555543
No 30
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.11 E-value=54 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 048488 27 LWFIPVNILVSLIIGSSLALILIK 50 (109)
Q Consensus 27 ~w~ipv~~ll~~~ig~~lg~lv~~ 50 (109)
+|..-+.+.+..++|.+.|+.++|
T Consensus 3 l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455557777788888888877664
No 31
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=43.03 E-value=39 Score=27.62 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=37.3
Q ss_pred hhhcccchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHHHHhhhcC
Q 048488 14 SLSETVTVKSLVTL-WFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAPAVCEMSN 86 (109)
Q Consensus 14 ~la~~lt~~~l~~~-w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~sl~~~~~ 86 (109)
-.+.+++.++.... +=--+-.+.=++++..+|+++.|++...- =.| =|++++.+++.+++
T Consensus 57 ~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g-------------~~Gls~laiiaa~~~~Ng 118 (312)
T PRK12460 57 CMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG-------------IFGLSGLAIVAAMSNSNG 118 (312)
T ss_pred HhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc-------------ccchHHHHHHHHHhcCcH
Confidence 34566666653331 00112223345889999999999998652 146 67888888877764
No 32
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=42.12 E-value=49 Score=26.01 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=34.0
Q ss_pred chhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 048488 20 TVKSLVTLW-FIPVNILVSLIIGSSLALILIKLTRTPPHLYSL 61 (109)
Q Consensus 20 t~~~l~~~w-~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~ 61 (109)
..+.+++.| .+-.++++-..++...++++.|.+..+++....
T Consensus 82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~S 124 (230)
T COG1346 82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILS 124 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 456676666 777888888899999999999999999886543
No 33
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=41.82 E-value=36 Score=24.67 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=35.6
Q ss_pred HHhhhcccchhhhhhhh----HHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCccceeeec
Q 048488 12 LSSLSETVTVKSLVTLW----FIPVNILVSLIIGSSLALILI-KLTRTPPHLYSLVVSCC 66 (109)
Q Consensus 12 Fs~la~~lt~~~l~~~w----~ipv~~ll~~~ig~~lg~lv~-~i~~~p~~~r~~~~~~~ 66 (109)
--..+-+++.||+++.+ .+-...+..+++-=+++|.+. +.++.+++.+-+++.++
T Consensus 8 mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~ 67 (187)
T PF01758_consen 8 MFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVA 67 (187)
T ss_dssp HHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34556678999988764 555555666777888899999 88999988665554433
No 34
>COG2855 Predicted membrane protein [Function unknown]
Probab=41.76 E-value=32 Score=28.44 Aligned_cols=48 Identities=23% Similarity=0.114 Sum_probs=35.6
Q ss_pred hhcccchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCCccce
Q 048488 15 LSETVTVKSLVTLWFIPV-NILVSLIIGSSLALILIKLTRTPPHLYSLV 62 (109)
Q Consensus 15 la~~lt~~~l~~~w~ipv-~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~ 62 (109)
++-++|.+++.++..=-+ ..+.+...+.+.++.++|.+|.||+..-.+
T Consensus 79 lG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Li 127 (334)
T COG2855 79 LGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLI 127 (334)
T ss_pred HcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 466799999999873222 244555778889999999999998876544
No 35
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=40.47 E-value=39 Score=25.10 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC----ccceeeecccCCch-hHH
Q 048488 34 ILVSLIIGSSLALILIKLTRTPPHL----YSLVVSCCSSGNYL-FLL 75 (109)
Q Consensus 34 ~ll~~~ig~~lg~lv~~i~~~p~~~----r~~~~~~~~fgN~g-LPl 75 (109)
+++.-+.+.++.|++.|.+|..|+. |+.++..- ..|.- =|+
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~-~~~~Em~pL 144 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTR-AENVEMAPL 144 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccceeecccCCC-cccceeccc
Confidence 4555667788899999999998753 34555433 45554 454
No 36
>PRK01844 hypothetical protein; Provisional
Probab=39.62 E-value=66 Score=20.94 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 048488 27 LWFIPVNILVSLIIGSSLALILIK 50 (109)
Q Consensus 27 ~w~ipv~~ll~~~ig~~lg~lv~~ 50 (109)
.|+.-+..++..++|.+.|+.++|
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444566778889999888765
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=39.49 E-value=34 Score=28.96 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccee
Q 048488 26 TLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVV 63 (109)
Q Consensus 26 ~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~ 63 (109)
++|..-+..++...+=+++=|++.++++.|.+.+++..
T Consensus 40 Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~ 77 (400)
T COG3071 40 SLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFS 77 (400)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35556666777778888999999999999988777653
No 38
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=39.09 E-value=57 Score=26.78 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHHHHHhhhcC
Q 048488 37 SLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIAPAVCEMSN 86 (109)
Q Consensus 37 ~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv~sl~~~~~ 86 (109)
=++++.++|+++.|++...--..+++ .| =|++++.+++.+.+
T Consensus 81 K~~i~~~~g~~~~~~~g~~Gi~~g~~--------~GlS~LAiiaA~~nsNg 123 (314)
T TIGR00793 81 KIAVAWVVAAIASRIIPEDGVEVGFF--------AGLSTLALVAAMDMTNG 123 (314)
T ss_pred HHHHHHHHHHHHHHHcCcCCccccce--------eccHHHHHHHHHhCCcH
Confidence 45889999999999998653333332 14 57777777776654
No 39
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=38.99 E-value=65 Score=26.37 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=43.2
Q ss_pred HhhhcccchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch-hHHHHH
Q 048488 13 SSLSETVTVKSLVTLWFIPV-NILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL-FLLVIA 78 (109)
Q Consensus 13 s~la~~lt~~~l~~~w~ipv-~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g-LPl~lv 78 (109)
-.++.++|.+++.+.++--+ ..+++..+....++.+.|.+|.+++. ....++..||.= =|-++.
T Consensus 203 f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 203 FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 35788899999999864333 33445677888888888999877665 333444467765 555444
No 40
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=38.28 E-value=8.4 Score=34.79 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=43.1
Q ss_pred HhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ccceeeecccCCch-hHHHHHHHHhhhc
Q 048488 13 SSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHL-YSLVVSCCSSGNYL-FLLVIAPAVCEMS 85 (109)
Q Consensus 13 s~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~-r~~~~~~~~fgN~g-LPl~lv~sl~~~~ 85 (109)
+||.+. -++.-+||+.-+ .+++..++...+...+---+. ..+++.||+++=.. +|+.+++|...+.
T Consensus 432 trlMkk--YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~ 499 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQT 499 (761)
T ss_pred HHHHHH--hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCC
Confidence 445555 678888998655 233555666666555542122 34556677777778 9999999998774
No 41
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.08 E-value=38 Score=26.23 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=22.3
Q ss_pred chhhhhhhh---HHHHHHHHHHHHHHHHHHHHH
Q 048488 20 TVKSLVTLW---FIPVNILVSLIIGSSLALILI 49 (109)
Q Consensus 20 t~~~l~~~w---~ipv~~ll~~~ig~~lg~lv~ 49 (109)
..|.+++|| ..++.+.+..++|.++||=--
T Consensus 10 ql~~ik~wwkeNGk~li~gviLg~~~lfGW~yw 42 (207)
T COG2976 10 QLEAIKDWWKENGKALIVGVILGLGGLFGWRYW 42 (207)
T ss_pred HHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHH
Confidence 367899999 566666677788888888543
No 42
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=36.80 E-value=1.4e+02 Score=23.93 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=34.8
Q ss_pred HHHhhhcccchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 048488 11 MLSSLSETVTVKSLVTLW----FIPVNILVSLIIGSSLALILIKLTRTPPHL 58 (109)
Q Consensus 11 vFs~la~~lt~~~l~~~w----~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~ 58 (109)
+-..++.+++.+++++.. ..-+..++....+...+|++.|+++.|...
T Consensus 213 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t 264 (318)
T PF05145_consen 213 IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLT 264 (318)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 556778888888877765 233444555588999999999999988443
No 43
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=34.72 E-value=62 Score=20.53 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048488 29 FIPVNILVSLIIGSSLALILIKLTRTP 55 (109)
Q Consensus 29 ~ipv~~ll~~~ig~~lg~lv~~i~~~p 55 (109)
.+|+.+++.+++++..+.+...+++=|
T Consensus 6 l~PL~~~vg~a~~~a~~~~~r~l~~~P 32 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFYLYRLLLTNP 32 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 389988888888888888877775544
No 44
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=34.04 E-value=42 Score=21.86 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048488 34 ILVSLIIGSSLALILIK 50 (109)
Q Consensus 34 ~ll~~~ig~~lg~lv~~ 50 (109)
+.+...+|+++|+++.|
T Consensus 77 vgiAagvG~llG~Ll~R 93 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLLRR 93 (94)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34455677777777654
No 45
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=33.79 E-value=1.8e+02 Score=24.26 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHhhhccc--chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCchhHHHHHHH
Q 048488 10 YMLSSLSETV--TVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYLFLLVIAPA 80 (109)
Q Consensus 10 LvFs~la~~l--t~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~gLPl~lv~s 80 (109)
++|+.=++.+ .+.++.. +.+-.++.+..-+.+++..+|..|.|.+...-+..+++-.|..|-+++--+
T Consensus 230 liF~~qg~~Iv~~p~~i~l---iAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~ 299 (342)
T COG0798 230 LIFAFQGEQIVEQPLDILL---IAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIA 299 (342)
T ss_pred HHHHHhHHHHHhChHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHH
Confidence 4555555554 2333333 333345666778889999999999998888777766665555544444333
No 46
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.30 E-value=75 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.520 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048488 26 TLWFIPVNILVSLIIGSSLALILIKLTRTP 55 (109)
Q Consensus 26 ~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p 55 (109)
+.|..|. +..++|.++|+++.|+++-.
T Consensus 6 ~~W~~a~---igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 6 MTWEYAL---IGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHcchh
Confidence 4566655 45568999999999987644
No 47
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=32.34 E-value=1e+02 Score=22.73 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=27.6
Q ss_pred HHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 048488 11 MLSSLSETVTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTR 53 (109)
Q Consensus 11 vFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~ 53 (109)
+-+-+++-+.-++...+.++|- ++..++.|..+|+++.|.+|
T Consensus 107 ~sypva~~~~g~~~~~~~~v~~-F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 107 LSYPVAKLFMGKEAALFFFVPP-FLISTLIGAIIGYILLKALK 148 (150)
T ss_pred HHHHHHHHHhCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444455555 78889999999999988775
No 48
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=31.85 E-value=99 Score=26.01 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=33.2
Q ss_pred HHHHhhhccc-ch---hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 048488 10 YMLSSLSETV-TV---KSLVTLW-FIPVNILVSLIIGSSLALILIKLTRTPPH 57 (109)
Q Consensus 10 LvFs~la~~l-t~---~~l~~~w-~ipv~~ll~~~ig~~lg~lv~~i~~~p~~ 57 (109)
|+|.++...+ +. +++.+++ -.-+.+++++.++..+|..+..++++.+.
T Consensus 59 LVf~Sii~gI~~l~~~~~lg~ig~~~~~~f~~tt~ia~~igl~~~~i~~PG~g 111 (437)
T PRK11283 59 IVISTLIVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAG 111 (437)
T ss_pred HHHHHHHHHHHhcccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5677776663 44 4554443 23346777789999999999999998643
No 49
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=31.36 E-value=88 Score=24.49 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=31.9
Q ss_pred hhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 048488 21 VKSLVTLW-FIPVNILVSLIIGSSLALILIKLTRTPPHLYS 60 (109)
Q Consensus 21 ~~~l~~~w-~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~ 60 (109)
.+.+++.| .+-+..++...++.+.++.++|.+..+++...
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~ 126 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMA 126 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 45666655 67777778889999999999999999987543
No 50
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.13 E-value=50 Score=21.74 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch
Q 048488 27 LWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL 72 (109)
Q Consensus 27 ~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g 72 (109)
.|++-..+.+..++|+.+|+++.| |... =.|++.+|.|
T Consensus 3 t~lltFg~Fllvi~gMsiG~I~kr-----k~I~---GSCGGi~alG 40 (77)
T COG2991 3 TFLLTFGIFLLVIAGMSIGYIFKR-----KSIK---GSCGGIAALG 40 (77)
T ss_pred cHHHHHHHHHHHHHHHhHhhheec-----cccc---cccccHHhhc
Confidence 477788888888999999998763 1111 2567778877
No 51
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=30.50 E-value=1.2e+02 Score=19.89 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhCC
Q 048488 38 LIIGSSLALILIKLTRT 54 (109)
Q Consensus 38 ~~ig~~lg~lv~~i~~~ 54 (109)
-++|...|+..++-.+.
T Consensus 53 D~~Sl~aGf~~a~~m~~ 69 (74)
T PF09964_consen 53 DAVSLTAGFLYAKKMLK 69 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777776654433
No 52
>COG3771 Predicted membrane protein [Function unknown]
Probab=29.88 E-value=33 Score=23.46 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC
Q 048488 36 VSLIIGSSLALILIKLTRTPPHL 58 (109)
Q Consensus 36 l~~~ig~~lg~lv~~i~~~p~~~ 58 (109)
..|++|..+||++.-+|...-+.
T Consensus 47 ~lF~~G~~lgwli~g~fy~k~~l 69 (97)
T COG3771 47 TLFAAGFALGWLICGLFYLKVRL 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999887665443
No 53
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=29.88 E-value=61 Score=20.60 Aligned_cols=17 Identities=24% Similarity=0.755 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048488 34 ILVSLIIGSSLALILIK 50 (109)
Q Consensus 34 ~ll~~~ig~~lg~lv~~ 50 (109)
+++..++|.+.||.++|
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666778888887765
No 54
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.04 E-value=80 Score=23.53 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048488 32 VNILVSLIIGSSLALILIKL 51 (109)
Q Consensus 32 v~~ll~~~ig~~lg~lv~~i 51 (109)
+..++.+++|+++||++.+.
T Consensus 4 i~~i~~~~vG~~~G~~~~~~ 23 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRKK 23 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33556677788888887654
No 55
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=26.19 E-value=1.3e+02 Score=17.56 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 048488 23 SLVTLWFIPVNILVSLIIGSSLALILIKLT 52 (109)
Q Consensus 23 ~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~ 52 (109)
++.++-+=-+..++..++|+.++-.+.|+.
T Consensus 10 ~ii~~lP~iv~AilIl~vG~~va~~v~~~~ 39 (53)
T PF05552_consen 10 QIIAYLPNIVGAILILIVGWWVAKFVRKLV 39 (53)
T ss_dssp ---GGHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333445566667777776666654
No 56
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=25.34 E-value=1.3e+02 Score=24.11 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=39.9
Q ss_pred HHHhhhcccchhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCcccee
Q 048488 11 MLSSLSETVTVKSLVTL----WFIPVNILVSLIIGSSLALILIKLT-RTPPHLYSLVV 63 (109)
Q Consensus 11 vFs~la~~lt~~~l~~~----w~ipv~~ll~~~ig~~lg~lv~~i~-~~p~~~r~~~~ 63 (109)
+-..++-+++.||+++. +.+-+..+..+++.=+++|.+++++ +.|++.+-+++
T Consensus 52 mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~~Gli 109 (328)
T TIGR00832 52 MMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLI 109 (328)
T ss_pred HHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34455577888888764 4677777788888889999999985 88888766553
No 57
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=24.45 E-value=75 Score=24.19 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch---hHHHHHHHH
Q 048488 27 LWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL---FLLVIAPAV 81 (109)
Q Consensus 27 ~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g---LPl~lv~sl 81 (109)
+.-+++|.+.+-+.+...+|.+.|..|-.+.-|+.....++|-+.. +=.++.-++
T Consensus 105 it~LG~N~l~m~~~~~~~~~~~~~~~~~~~l~~~v~~f~~gf~~~~l~~~~~~~~l~l 162 (214)
T TIGR00123 105 LTTLGANGFSMGVIGPFVGWIVYKLACRAGLRRDVAVFLAAMLGDLATYVVTSVQLAL 162 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3348999999999999999999988764322344555555555544 444444444
No 58
>PRK10711 hypothetical protein; Provisional
Probab=24.09 E-value=1.4e+02 Score=23.29 Aligned_cols=42 Identities=7% Similarity=0.181 Sum_probs=32.7
Q ss_pred hhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccce
Q 048488 21 VKSLVTLW-FIPVNILVSLIIGSSLALILIKLTRTPPHLYSLV 62 (109)
Q Consensus 21 ~~~l~~~w-~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~ 62 (109)
.+.+++.| .+-+...+...++...+++++|.+..+++.....
T Consensus 81 ~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl 123 (231)
T PRK10711 81 LHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASI 123 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45666665 5666677888999999999999999998865543
No 59
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=23.92 E-value=1.4e+02 Score=24.92 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=34.3
Q ss_pred HHHHHhhhccc-ch---hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048488 9 AYMLSSLSETV-TV---KSLVTLWF-IPVNILVSLIIGSSLALILIKLTRTPP 56 (109)
Q Consensus 9 aLvFs~la~~l-t~---~~l~~~w~-ipv~~ll~~~ig~~lg~lv~~i~~~p~ 56 (109)
=|+|.++...+ +. +++.++.. .-+.+++++.++..+|..+..++++-+
T Consensus 50 PlVf~sii~gI~~l~~~~~~grig~~~~~~f~~tt~ia~~igl~~~~~~~pg~ 102 (421)
T PRK13027 50 PIVFCVVVSGIAGAGDLKKVGRVGLKAVIYFEVMTTIALVIGLVLAYLTGPGV 102 (421)
T ss_pred HHHHHHHHHHHHhCccchhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36788887764 44 55666553 334556788999999999999999954
No 60
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=23.88 E-value=28 Score=28.42 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCCCCccceeeecccCCch----hHHH
Q 048488 40 IGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL----FLLV 76 (109)
Q Consensus 40 ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g----LPl~ 76 (109)
+|..+|..+.|.+|.+++.|+..++|++..=.. -|++
T Consensus 111 iGa~i~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPla 151 (388)
T cd01033 111 VGALLAQRFSDWLGLTVADRRLLVACAAGAGLAAVYNVPLA 151 (388)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 678888889999999999999888887664443 4555
No 61
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=23.86 E-value=2.4e+02 Score=24.24 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCccceeeecccCCch-hHHHHHHHHhhhcCCCCCCCchhhhh
Q 048488 27 LWFIPVNILVSLIIGSSLALILIKL-TRTPPHLYSLVVSCCSSGNYL-FLLVIAPAVCEMSNSPFGDSSACSSD 98 (109)
Q Consensus 27 ~w~ipv~~ll~~~ig~~lg~lv~~i-~~~p~~~r~~~~~~~~fgN~g-LPl~lv~sl~~~~~~pf~~~~~~~~~ 98 (109)
+|.+++..+...+..++.-|++.|. +|.|-|...- -..-...+.. ..-.+++++..+++.-- -|.|.+|
T Consensus 380 ~~~~~igi~~~~vy~fvf~~~I~k~~l~TpGRe~~~-~~~~~~~~~~~~a~~ii~~lGG~~NI~~--v~~C~TR 450 (502)
T TIGR02002 380 WLFIIVGIGYAIIYYFLFRFLIKKLNLKTPGREDAT-AEAKATGEPSELAFDVVAALGGKENITS--LDACITR 450 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc-cccccccccchhHHHHHHHcCCCccccc--ccccccE
Confidence 5566666666666666666666554 4544444220 0000112234 67778888877765433 2345544
No 62
>PRK00523 hypothetical protein; Provisional
Probab=23.49 E-value=1.8e+02 Score=18.90 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048488 30 IPVNILVSLIIGSSLALILIK 50 (109)
Q Consensus 30 ipv~~ll~~~ig~~lg~lv~~ 50 (109)
.-+.+++..++|.+.|+.++|
T Consensus 7 ~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455567888888887765
No 63
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=23.30 E-value=2e+02 Score=23.41 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=33.1
Q ss_pred HHHHHhhhccc-ch---hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048488 9 AYMLSSLSETV-TV---KSLVTLWF-IPVNILVSLIIGSSLALILIKLTRTP 55 (109)
Q Consensus 9 aLvFs~la~~l-t~---~~l~~~w~-ipv~~ll~~~ig~~lg~lv~~i~~~p 55 (109)
=|+|.++...+ +. ++..+++. .-..+++++.++..+|.++..++++-
T Consensus 45 PLVf~sii~gi~~l~~~~~~g~i~~~~i~~~~~~t~~A~~ig~~~~~~~~pg 96 (390)
T PF00375_consen 45 PLVFSSIISGIASLGDAKKLGRIGGRTILYFLLTTLLAAAIGLLVALLFQPG 96 (390)
T ss_dssp HHHHHHHHHHCHSHT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SS
T ss_pred HHHHHHHHhhccCCccccccccHHHHHHHHHHHHHHHHHHHHHHHheeeCCC
Confidence 35888888775 44 45555443 44456777899999999999999987
No 64
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=21.64 E-value=1.4e+02 Score=21.30 Aligned_cols=10 Identities=50% Similarity=1.318 Sum_probs=7.1
Q ss_pred hhHHHHHHHH
Q 048488 27 LWFIPVNILV 36 (109)
Q Consensus 27 ~w~ipv~~ll 36 (109)
+|+.|+..++
T Consensus 104 LW~~P~lll~ 113 (126)
T TIGR03147 104 LWLLPVLLLL 113 (126)
T ss_pred HHHHHHHHHH
Confidence 6899985544
No 65
>PF07343 DUF1475: Protein of unknown function (DUF1475); InterPro: IPR009943 This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=20.56 E-value=1.2e+02 Score=24.21 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-------------------------ccceeeecccCCch--hHHHHHH
Q 048488 27 LWFIPVNILVSLIIGSSLALILIKLTRTPPHL-------------------------YSLVVSCCSSGNYL--FLLVIAP 79 (109)
Q Consensus 27 ~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~-------------------------r~~~~~~~~fgN~g--LPl~lv~ 79 (109)
.|.+|+ +.+..-..+.|++.|++|+.++. ...+.+...|.=.| +-..++.
T Consensus 77 ~Wivll---~~lGsi~t~~Yl~i~l~~L~~~~~~qdp~~~~llr~~~~~g~~~~~~~s~vv~ar~vf~iLGavMl~vliy 153 (254)
T PF07343_consen 77 FWIVLL---ICLGSIATCAYLVIQLLKLSPQESSQDPMYYLLLRNPIKQGNGPRRKSSFVVTARIVFSILGAVMLFVLIY 153 (254)
T ss_pred HHHHHH---HHhhhHHHHHHHHHHHHhhccccccccchHHHHhhcccccCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 466666 33344556788888888876331 12456667777777 4444444
Q ss_pred HHhhhcCCCCCC
Q 048488 80 AVCEMSNSPFGD 91 (109)
Q Consensus 80 sl~~~~~~pf~~ 91 (109)
++- ++|+||..
T Consensus 154 t~i-TdG~pFr~ 164 (254)
T PF07343_consen 154 TLI-TDGSPFRK 164 (254)
T ss_pred HHh-hCCCcchH
Confidence 433 88899974
No 66
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=20.36 E-value=2.8e+02 Score=20.35 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCCCCccce
Q 048488 30 IPVNILVSLIIGSSLALILIK-LTRTPPHLYSLV 62 (109)
Q Consensus 30 ipv~~ll~~~ig~~lg~lv~~-i~~~p~~~r~~~ 62 (109)
.-+..++.+.++.++++.+.| ++|.|+..--..
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~ 119 (169)
T PF06826_consen 86 LLLLGVIITLVPLLIALVIGRYLFKLNPGIAAGI 119 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 334466777889999999999 999995544333
Done!