Query 048488
Match_columns 109
No_of_seqs 107 out of 208
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 90.6 0.15 5.2E-06 39.7 2.8 45 33-77 233-279 (332)
2 3zux_A Transporter, ASBTNM; tr 49.3 14 0.00049 28.4 3.5 60 10-69 51-114 (332)
3 2nwl_A GLTPH, glutamate sympor 22.0 2.1E+02 0.0073 22.7 6.2 51 7-57 58-112 (422)
4 3nd0_A SLL0855 protein; CLC fa 18.6 22 0.00075 28.8 -0.3 30 39-68 149-178 (466)
5 2kg4_A Growth arrest and DNA-d 18.5 43 0.0015 23.9 1.2 29 73-101 73-101 (165)
6 1ots_A Voltage-gated CLC-type 15.6 28 0.00095 28.0 -0.4 28 40-67 154-182 (465)
7 4ene_A CLC-EC1, H(+)/CL(-) exc 14.5 38 0.0013 27.0 0.2 29 39-67 138-167 (446)
8 1vf5_F Protein PET M; photosyn 14.3 1.7E+02 0.0058 15.7 3.8 23 30-52 8-30 (35)
9 3fze_A Protein STE5; alpha/bet 13.8 89 0.003 23.0 2.0 19 77-95 173-191 (196)
10 1q90_M Cytochrome B6F complex 11.8 2.2E+02 0.0075 15.6 4.5 24 30-53 9-32 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=90.57 E-value=0.15 Score=39.70 Aligned_cols=45 Identities=18% Similarity=0.038 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccCCch--hHHHH
Q 048488 33 NILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSGNYL--FLLVI 77 (109)
Q Consensus 33 ~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fgN~g--LPl~l 77 (109)
..++...+++.+||.++|.+|.+++.|.-+...|+..|++ +|++.
T Consensus 233 ~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~ 279 (332)
T 3zux_A 233 VVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAA 279 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHH
Confidence 3566778999999999999999999998888888889987 55543
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=49.30 E-value=14 Score=28.36 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=43.0
Q ss_pred HHHHhhhcccchhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccceeeecccC
Q 048488 10 YMLSSLSETVTVKSLVT----LWFIPVNILVSLIIGSSLALILIKLTRTPPHLYSLVVSCCSSG 69 (109)
Q Consensus 10 LvFs~la~~lt~~~l~~----~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~r~~~~~~~~fg 69 (109)
+++-..+-+++.+++++ +...-+..+..+++.=+++|.+.+.++.|+..+-+++..+..+
T Consensus 51 ~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P 114 (332)
T 3zux_A 51 IIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCP 114 (332)
T ss_dssp HHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCC
Confidence 35666777889999874 3344455566667777899999999999988777666555544
No 3
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=22.00 E-value=2.1e+02 Score=22.67 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=37.7
Q ss_pred hhHHHHHhhhcccc-h--hhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 048488 7 NPAYMLSSLSETVT-V--KSLVTL-WFIPVNILVSLIIGSSLALILIKLTRTPPH 57 (109)
Q Consensus 7 ~PaLvFs~la~~lt-~--~~l~~~-w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~ 57 (109)
.|=|+|.++...+. . +++.++ +-.-..+++++.++..+|.+++.++++-+.
T Consensus 58 v~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 58 VMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45578888888863 3 555554 345566788889999999999999987644
No 4
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=18.61 E-value=22 Score=28.75 Aligned_cols=30 Identities=7% Similarity=0.127 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCccceeeeccc
Q 048488 39 IIGSSLALILIKLTRTPPHLYSLVVSCCSS 68 (109)
Q Consensus 39 ~ig~~lg~lv~~i~~~p~~~r~~~~~~~~f 68 (109)
=+|+.+|..+.|.+|.+++.|+.+++|++.
T Consensus 149 qiGa~ig~~l~~~~~~~~~~~r~ll~aGaA 178 (466)
T 3nd0_A 149 QMGGSIGQMTGGWFKATQENQRILIAVGAG 178 (466)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 457889999999999999888888887743
No 5
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=18.48 E-value=43 Score=23.88 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhhcCCCCCCCchhhhhhhH
Q 048488 73 FLLVIAPAVCEMSNSPFGDSSACSSDGET 101 (109)
Q Consensus 73 LPl~lv~sl~~~~~~pf~~~~~~~~~G~a 101 (109)
+|..+++++|.|.+.|.-.-|+-.+.|-+
T Consensus 73 i~~~li~alC~E~~Ip~i~V~s~k~LG~a 101 (165)
T 2kg4_A 73 IHFTLIQAFCCENDINILRVSNPGRLAEL 101 (165)
T ss_dssp HHHHHHHHHHHHTTCCEEEESCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCEEEECCHHHHHHH
Confidence 78899999999999997543345555543
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=15.64 E-value=28 Score=27.95 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCC-CCCCccceeeecc
Q 048488 40 IGSSLALILIKLTRT-PPHLYSLVVSCCS 67 (109)
Q Consensus 40 ig~~lg~lv~~i~~~-p~~~r~~~~~~~~ 67 (109)
+|+.+|..+.|.+|. +++.|+.+++|++
T Consensus 154 iGa~ig~~l~~~~~l~~~~~~r~li~~Ga 182 (465)
T 1ots_A 154 IGGNIGRMVLDIFRLKGDEARHTLLATGA 182 (465)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 578999999999996 7777777777664
No 7
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=14.48 E-value=38 Score=27.01 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCcc-ceeeecc
Q 048488 39 IIGSSLALILIKLTRTPPHLYS-LVVSCCS 67 (109)
Q Consensus 39 ~ig~~lg~lv~~i~~~p~~~r~-~~~~~~~ 67 (109)
=+|+.+|..+.|.+|.+++.|+ ..++|++
T Consensus 138 qiGa~ig~~~~~~~~~~~~~~r~~ll~aGa 167 (446)
T 4ene_A 138 QIGGNIGRMVLDIFRLKGDEARHTLLATGA 167 (446)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3577888999999999877775 7766665
No 8
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=14.34 E-value=1.7e+02 Score=15.66 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 048488 30 IPVNILVSLIIGSSLALILIKLT 52 (109)
Q Consensus 30 ipv~~ll~~~ig~~lg~lv~~i~ 52 (109)
+...+...+.+|..+|+++-|+-
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhheee
Confidence 44555667788999999988764
No 9
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=13.85 E-value=89 Score=22.96 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=14.7
Q ss_pred HHHHHhhhcCCCCCCCchh
Q 048488 77 IAPAVCEMSNSPFGDSSAC 95 (109)
Q Consensus 77 lv~sl~~~~~~pf~~~~~~ 95 (109)
+++++|++-+.-||++|+.
T Consensus 173 lLEaLCYSF~L~F~dDdd~ 191 (196)
T 3fze_A 173 VLETLCYSFGLSFDEHDDD 191 (196)
T ss_dssp HHHHHHHHTTCCSSCCCC-
T ss_pred HHHHHHheecccccCCCcc
Confidence 5789999999999875443
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=11.76 E-value=2.2e+02 Score=15.56 Aligned_cols=24 Identities=8% Similarity=0.434 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 048488 30 IPVNILVSLIIGSSLALILIKLTR 53 (109)
Q Consensus 30 ipv~~ll~~~ig~~lg~lv~~i~~ 53 (109)
+...+...+++|..+|+++-|+-+
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 455566677889999999988743
Done!