Query 048488
Match_columns 109
No_of_seqs 107 out of 208
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 17:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048488.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048488hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nwwa1 f.49.1.1 (A:12-416) Pr 17.9 1.5E+02 0.011 20.9 6.4 51 8-58 48-102 (405)
2 d1ymga1 f.19.1.1 (A:6-239) Aqu 16.4 1.4E+02 0.01 19.6 6.1 46 6-58 62-108 (234)
3 d1g8fa3 c.37.1.15 (A:390-511) 14.6 58 0.0042 20.4 2.7 29 55-83 1-32 (122)
4 d1jo5a_ f.3.1.1 (A:) Light-har 11.3 1.2E+02 0.0086 16.0 3.4 40 15-54 6-46 (48)
5 d1bs0a_ c.67.1.4 (A:) PLP-depe 10.3 59 0.0043 23.0 1.9 35 53-87 162-198 (383)
6 d1m8pa3 c.37.1.15 (A:391-573) 9.6 64 0.0047 18.8 1.7 22 55-76 1-23 (183)
7 d1zj6a1 c.37.1.8 (A:2-178) ADP 8.5 41 0.003 20.1 0.3 25 55-84 13-38 (177)
8 d1poia_ c.124.1.2 (A:) Glutaco 8.3 80 0.0059 22.4 2.0 26 60-85 17-42 (317)
9 d1ooya2 c.124.1.2 (A:1-242) Su 7.3 1E+02 0.0073 20.9 2.0 26 60-85 17-42 (242)
10 d1rc2a_ f.19.1.1 (A:) Aquapori 6.9 3.1E+02 0.022 17.5 5.2 43 6-55 62-105 (231)
No 1
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.93 E-value=1.5e+02 Score=20.95 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=35.9
Q ss_pred hHHHHHhhhccc---chhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 048488 8 PAYMLSSLSETV---TVKSLVTLW-FIPVNILVSLIIGSSLALILIKLTRTPPHL 58 (109)
Q Consensus 8 PaLvFs~la~~l---t~~~l~~~w-~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~ 58 (109)
+=|+|.++...+ +-+++.++. -.-..+++++.++..+|++++..+++....
T Consensus 48 ~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~ 102 (405)
T d2nwwa1 48 MPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGI 102 (405)
T ss_dssp HHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 446788887774 223444443 345557778899999999999999987654
No 2
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.42 E-value=1.4e+02 Score=19.58 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=32.0
Q ss_pred hhhHHHHHhhhcc-cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 048488 6 FNPAYMLSSLSET-VTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTPPHL 58 (109)
Q Consensus 6 f~PaLvFs~la~~-lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p~~~ 58 (109)
|.||..+.-.... ++.+++.- +.+..++|+++|-++.+....++..
T Consensus 62 ~NPAVTla~~~~g~i~~~~~~~-------Yi~aQ~lGa~~ga~l~~~~~~~~~~ 108 (234)
T d1ymga1 62 VNPAVTFAFLVGSQMSLLRAIC-------YMVAQLLGAVAGAAVLYSVTPPAVR 108 (234)
T ss_dssp CSHHHHHHHHHTTSSCHHHHHH-------HHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred cCchhhHHHHhccCCChhheee-------eeehHHHHHHHHHHHHHHHcCcccc
Confidence 5788877655544 77776555 5567788888888888877655543
No 3
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.57 E-value=58 Score=20.39 Aligned_cols=29 Identities=7% Similarity=0.043 Sum_probs=26.2
Q ss_pred CCCCccceeeecccCCch---hHHHHHHHHhh
Q 048488 55 PPHLYSLVVSCCSSGNYL---FLLVIAPAVCE 83 (109)
Q Consensus 55 p~~~r~~~~~~~~fgN~g---LPl~lv~sl~~ 83 (109)
|++.+++.+...+..|+| |-.++...+-+
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999998 88899888865
No 4
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.33 E-value=1.2e+02 Score=16.00 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=25.7
Q ss_pred hhcc-cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048488 15 LSET-VTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRT 54 (109)
Q Consensus 15 la~~-lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~ 54 (109)
+..+ +|-++-+|+-=+-+.....+..-++++-+++.+-|+
T Consensus 6 ~s~tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 6 LGYTGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGTGGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444 788888887655555556666666666666666553
No 5
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}
Probab=10.26 E-value=59 Score=22.99 Aligned_cols=35 Identities=17% Similarity=-0.046 Sum_probs=28.2
Q ss_pred CCCCCCccceeeecccCCch--hHHHHHHHHhhhcCC
Q 048488 53 RTPPHLYSLVVSCCSSGNYL--FLLVIAPAVCEMSNS 87 (109)
Q Consensus 53 ~~p~~~r~~~~~~~~fgN~g--LPl~lv~sl~~~~~~ 87 (109)
+-.++.+..++..+.+++.| .|+--+..+|++.+.
T Consensus 162 ~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~ 198 (383)
T d1bs0a_ 162 ASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNG 198 (383)
T ss_dssp HSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTC
T ss_pred cccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCc
Confidence 33456678888899998889 999999999998753
No 6
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=9.61 E-value=64 Score=18.77 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=18.4
Q ss_pred CCCCccceeeecccCCch-hHHH
Q 048488 55 PPHLYSLVVSCCSSGNYL-FLLV 76 (109)
Q Consensus 55 p~~~r~~~~~~~~fgN~g-LPl~ 76 (109)
|++.|+.++.-++.+-+| -=++
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 889999999999999999 4433
No 7
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}
Probab=8.53 E-value=41 Score=20.12 Aligned_cols=25 Identities=12% Similarity=-0.203 Sum_probs=15.2
Q ss_pred CCCCccceeeecccCCch-hHHHHHHHHhhh
Q 048488 55 PPHLYSLVVSCCSSGNYL-FLLVIAPAVCEM 84 (109)
Q Consensus 55 p~~~r~~~~~~~~fgN~g-LPl~lv~sl~~~ 84 (109)
++.+| ++-++.+|+| = +++..+.+.
T Consensus 13 ~k~~k---I~vvG~~~~GKS--sLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHK---VIIVGLDNAGKT--TILYQFSMN 38 (177)
T ss_dssp TSCEE---EEEEESTTSSHH--HHHHHHHTT
T ss_pred CCeEE---EEEECCCCCCHH--HHHHHHhcC
Confidence 54444 5667899999 4 334555544
No 8
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}
Probab=8.33 E-value=80 Score=22.35 Aligned_cols=26 Identities=0% Similarity=-0.272 Sum_probs=22.7
Q ss_pred cceeeecccCCchhHHHHHHHHhhhc
Q 048488 60 SLVVSCCSSGNYLFLLVIAPAVCEMS 85 (109)
Q Consensus 60 ~~~~~~~~fgN~gLPl~lv~sl~~~~ 85 (109)
+-.++.++|+..+.|.+++.+|.++.
T Consensus 17 G~ti~igGf~~~~~P~ali~el~r~~ 42 (317)
T d1poia_ 17 GDHIALGGFTTDRKPYAAVFEILRQG 42 (317)
T ss_dssp TCEEEECSBTTBSCCHHHHHHHHHTT
T ss_pred cCEEEECCccCcCCHHHHHHHHHHhC
Confidence 56788899998889999999999874
No 9
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.26 E-value=1e+02 Score=20.90 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=22.8
Q ss_pred cceeeecccCCchhHHHHHHHHhhhc
Q 048488 60 SLVVSCCSSGNYLFLLVIAPAVCEMS 85 (109)
Q Consensus 60 ~~~~~~~~fgN~gLPl~lv~sl~~~~ 85 (109)
+-.++.++|+..+.|.+++.+|.++.
T Consensus 17 G~~i~~gGf~~~~~P~ali~el~r~~ 42 (242)
T d1ooya2 17 GATVLVGGFGLCGIPENLIGALLKTG 42 (242)
T ss_dssp TCEEEECCBTTBTCCHHHHHHHHHHC
T ss_pred cCEEEECCccCcCCHHHHHHHHHHhC
Confidence 66788899998889999999998874
No 10
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=6.93 E-value=3.1e+02 Score=17.46 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=27.5
Q ss_pred hhhHHHHHhhhcc-cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048488 6 FNPAYMLSSLSET-VTVKSLVTLWFIPVNILVSLIIGSSLALILIKLTRTP 55 (109)
Q Consensus 6 f~PaLvFs~la~~-lt~~~l~~~w~ipv~~ll~~~ig~~lg~lv~~i~~~p 55 (109)
+.||..+.-.... ++.++..- +.+..++|+++|-.+.+.....
T Consensus 62 ~NPAVTla~~~~g~~~~~~~~~-------Yi~aQ~lGa~~g~~l~~~i~~~ 105 (231)
T d1rc2a_ 62 FNPAVTIGLWAGGRFPAKEVVG-------YVIAQVVGGIVAAALLYLIASG 105 (231)
T ss_dssp CSHHHHHHHHHTTCSCTTTHHH-------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCchhHHHHhcCCCcHHHHHH-------HHHHHHHHHHHHHHHHHHHhcc
Confidence 4677755554433 55555444 5667788888888888776443
Done!