BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048492
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 23/247 (9%)
Query: 26 IPLIDLSPLSFSNDANTKNIDDLVVEIGNACKKWGFFQVINHGVPLEKRQKVEDAMRKFF 85
+P IDL + S+D + ++ + E+ A WG +INHG+P + ++V+ A +FF
Sbjct: 46 VPTIDLKNIE-SDDEKIR--ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 102
Query: 86 AQPLXXXXXXXXXXXXAVGY---YDNEHTKNVRDWKEVFDFVVEKRILMAASHEPEDKEV 142
+ L A G Y ++ N E D+ +A E D
Sbjct: 103 S--LSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH----LAYPEEKRD--- 153
Query: 143 PETLNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFS---SFFEDPTRF 199
L+ WP P + E+ EYA+ + LA K+ + +++ LGL R E+
Sbjct: 154 ---LSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQ 210
Query: 200 VRLNHYPPCPAPHLALGVGRHKDPSALTILAQDDVGGLEVKRKSDGEWVRIKPTPDAYII 259
+++N+YP CP P LALGV H D SALT + + V GL++ +G+WV K PD+ ++
Sbjct: 211 MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY--EGKWVTAKCVPDSIVM 268
Query: 260 NVGDILQ 266
++GD L+
Sbjct: 269 HIGDTLE 275
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 23/247 (9%)
Query: 26 IPLIDLSPLSFSNDANTKNIDDLVVEIGNACKKWGFFQVINHGVPLEKRQKVEDAMRKFF 85
+P IDL + S+D + ++ + E+ A WG +INHG+P + ++V+ A +FF
Sbjct: 47 VPTIDLKNIE-SDDEKIR--ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF 103
Query: 86 AQPLXXXXXXXXXXXXAVGY---YDNEHTKNVRDWKEVFDFVVEKRILMAASHEPEDKEV 142
+ L A G Y ++ N E D+ +A E D
Sbjct: 104 S--LSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH----LAYPEEKRD--- 154
Query: 143 PETLNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFS---SFFEDPTRF 199
L+ WP P + E+ EYA+ + LA K+ + +++ LGL R E+
Sbjct: 155 ---LSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQ 211
Query: 200 VRLNHYPPCPAPHLALGVGRHKDPSALTILAQDDVGGLEVKRKSDGEWVRIKPTPDAYII 259
+++N+YP CP P LALGV H D SALT + + V GL++ +G+WV K PD+ ++
Sbjct: 212 MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY--EGKWVTAKCVPDSIVM 269
Query: 260 NVGDILQ 266
++GD L+
Sbjct: 270 HIGDTLE 276
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 23/247 (9%)
Query: 26 IPLIDLSPLSFSNDANTKNIDDLVVEIGNACKKWGFFQVINHGVPLEKRQKVEDAMRKFF 85
+P IDL + S+D + ++ + E+ A WG +INHG+P + ++V+ A +FF
Sbjct: 47 VPTIDLKNIE-SDDEKIR--ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFF 103
Query: 86 AQPLXXXXXXXXXXXXAVGY---YDNEHTKNVRDWKEVFDFVVEKRILMAASHEPEDKEV 142
+ L A G Y ++ N E D+ +A E D
Sbjct: 104 S--LSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH----LAYPEEKRD--- 154
Query: 143 PETLNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFS---SFFEDPTRF 199
L+ WP P + E+ EYA+ + LA K+ + +++ LGL R E+
Sbjct: 155 ---LSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQ 211
Query: 200 VRLNHYPPCPAPHLALGVGRHKDPSALTILAQDDVGGLEVKRKSDGEWVRIKPTPDAYII 259
++N+YP CP P LALGV H D SALT + + V GL++ +G+WV K PD+ +
Sbjct: 212 XKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFY--EGKWVTAKCVPDSIVX 269
Query: 260 NVGDILQ 266
++GD L+
Sbjct: 270 HIGDTLE 276
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 32/248 (12%)
Query: 24 EGIPLIDLSPLSFSNDANTKNIDDLVVEIGNACKKWGFFQVINHGVPLEKRQKVEDAMRK 83
E P+I L ++ A T I +AC+ WGFF+++NHG+P E VE +
Sbjct: 2 ENFPIISLDKVNGVERAATXE------XIKDACENWGFFELVNHGIPREVXDTVEKXTKG 55
Query: 84 FFAQPLXXXXXXXXXXXXAVGYYDNEHTKNVRDWKEVFDFVVEKRILMAASHEPEDKEVP 143
+ + G + DW+ F K +P
Sbjct: 56 HYKKCXEQRFKELVASKALEGV---QAEVTDXDWESTFFL----------------KHLP 96
Query: 144 -ETLNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFF---EDPTRF 199
+++ PD E RE ++A+ +EKLA +L++L+ +LGL + F + P
Sbjct: 97 ISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFG 156
Query: 200 VRLNHYPPCPAPHLALGVGRHKDPSALTILAQDD-VGGLEVKRKSDGEWVRIKPTPDAYI 258
++++YPPCP P L G+ H D + +L QDD V GL++ + DG+W+ + P + +
Sbjct: 157 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DGQWIDVPPXRHSIV 214
Query: 259 INVGDILQ 266
+N+GD L+
Sbjct: 215 VNLGDQLE 222
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 18/242 (7%)
Query: 31 LSPLSFSNDANTKNIDDLVVEIGNACKKWGFFQVINHGVPLEKRQKVEDAMRKFFAQPLX 90
+ P+SFS A K+ E+G + +++GF + ++ + + D+ + FFA P+
Sbjct: 7 IDPVSFSLYA--KDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVE 64
Query: 91 XXXXXXXXXXXAVGY--YDNEHTKNVRDWKEVFDFVVEKRILMAA----SHEPEDKEVPE 144
A GY + E K D ++ +F R L +H +
Sbjct: 65 TKKQYAGVKGGARGYIPFGVETAKGA-DHYDLKEFWHXGRDLPPGHRFRAHXAD------ 117
Query: 145 TLNQWPDYPPELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFFEDPTRFVRLNH 204
N WP P + ++ K++E IA L L F +D +RL H
Sbjct: 118 --NVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLH 175
Query: 205 YPPCPAPHLALGVGRHKDPSALTILAQDDVGGLEVKRKSDGEWVRIKPTPDAYIINVGDI 264
YPP P + G H D + +T+L + GGLEV + DG+W+ I P P +IN+GD
Sbjct: 176 YPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDR-DGQWLPINPPPGCLVINIGDX 234
Query: 265 LQ 266
L+
Sbjct: 235 LE 236
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 35/262 (13%)
Query: 26 IPLIDLSPLSFSNDANTKNIDDLVVEIGNACKKWGFFQVINHGVPLEKRQKVEDAMRKFF 85
+P ID+SPL F +D K + +I A + GFF +NHG+ + Q++ ++F
Sbjct: 9 VPKIDVSPL-FGDDQAAKM--RVAQQIDAASRDTGFFYAVNHGINV---QRLSQKTKEF- 61
Query: 86 AQPLXXXXXXXXXXXXAVGYYDNEHTKNVRDWKEVF---DFVVEKRILMAASHEPEDKEV 142
A+ Y+ EH VR + VE + + P+ +
Sbjct: 62 ----HMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI 117
Query: 143 -----PETLNQWPDYP--PELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFF-- 193
+N WPD P ++ E+Y +V L+ L++ AL+LG + F+ F
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 194 EDPTRFVRLNHYPPC-PAPHLALGVGR---------HKDPSALTILAQDDVGGLEVKRKS 243
+D V L YP P P A+ H+D S +T+L Q +V L+V+ +
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 244 DGEWVRIKPTPDAYIINVGDIL 265
+ I+ Y+IN G +
Sbjct: 238 G--YQDIEADDTGYLINCGSYM 257
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 26 IPLIDLSPLSFSNDANTKNIDDLVVEIGNACKKWGFFQVINHGVPLEKRQKVEDAMRKFF 85
+P ID+SPL F +D K + +I A + GFF +NHG+ + Q++ ++F
Sbjct: 9 VPKIDVSPL-FGDDQAAKM--RVAQQIDAASRDTGFFYAVNHGINV---QRLSQKTKEF- 61
Query: 86 AQPLXXXXXXXXXXXXAVGYYDNEHTKNVRDW--------KEVFDFVVEKRILMAASHEP 137
A+ Y+ EH VR K V F
Sbjct: 62 ----HMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI 117
Query: 138 EDKEVPETLNQWPDYP--PELRESCEEYAREVEKLAYKLMELIALSLGLPASRFSSFF-- 193
+ K +N WPD P ++ E+Y +V L+ L++ AL+LG + F+ F
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 194 EDPTRFVRLNHYPPC-PAPHLALGVGR---------HKDPSALTILAQDDVGGLEVKRKS 243
+D V L YP P P A+ H+D S +T+L Q +V L+V+ +
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 244 DGEWVRIKPTPDAYIINVGDIL 265
+ I+ Y+IN G +
Sbjct: 238 G--YQDIEADDTGYLINCGSYM 257
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 149 WPDYPPELRESCEEYAREVEKLAYKLMELI----------ALSLGLPASRFSSFFEDPTR 198
W P LR + Y + LA +L+E I S+ LP +S
Sbjct: 95 WGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSH----KT 150
Query: 199 FVRLNHYPPCPAPH--LALGVGRHKDPSALTILAQDDVGGLEVKRKSDGEWVRIKPTPDA 256
+R+ HYPP A+ H+D + +T+L + GL+VK K DG W+ +
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAK-DGSWLDVPSDFGN 209
Query: 257 YIINVGDILQ 266
IIN+GD LQ
Sbjct: 210 IIINIGDXLQ 219
>pdb|4EZB|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
From Sinorhizobium Meliloti 1021
Length = 317
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 116 DWKEVFDFVVEKRILMAASHEPEDKEVPETLNQWPDYPPELRESCEEYA 164
DW++V D+ + + A E E ET+ + P R +CE A
Sbjct: 237 DWRDVADYYLSRTFEHGARRVTEXTEAAETIESFGLNAPXSRAACETIA 285
>pdb|3GEW|B Chain B, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ad Fimbriae
pdb|3GEW|C Chain C, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ad Fimbriae
pdb|3GFU|C Chain C, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ac 595
Fimbriae
pdb|3GFU|A Chain A, Faee-Faeg Chaperone-Major Pilin Complex Of F4 Ac 595
Fimbriae
Length = 224
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 128 RILMAASHEPEDKEVPETLNQWPDYPPELRESCEEYA-REVEKLAYK 173
RI+MA+ H P+DKE LN D PP L S A R KL Y+
Sbjct: 67 RIIMASDHLPKDKESVYWLN-LQDIPPALEGSGIAVALRTKLKLFYR 112
>pdb|3F65|A Chain A, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|B Chain B, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|C Chain C, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|D Chain D, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|E Chain E, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|F Chain F, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|G Chain G, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F65|H Chain H, The F4 Fimbrial Chaperone Faee Does Not Self-Cap Its
Interactive Surfaces
pdb|3F6L|A Chain A, Structure Of The F4 Fimbrial Chaperone Faee
pdb|3F6L|B Chain B, Structure Of The F4 Fimbrial Chaperone Faee
Length = 224
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 128 RILMAASHEPEDKEVPETLNQWPDYPPELRESCEEYA-REVEKLAYK 173
RI+MA+ H P+DKE LN D PP L S A R KL Y+
Sbjct: 67 RIIMASDHLPKDKESVYWLN-LQDIPPALEGSGIAVALRTKLKLFYR 112
>pdb|3E5L|A Chain A, Crystal Structure Of Cyp105p1 H72a Mutant
Length = 403
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 191 SFFEDPTRFVRLNHYPPCPAPHLALGVGRHK 221
+F E+P RF PAPHLA G G H+
Sbjct: 321 AFVEEPERFDITRR----PAPHLAFGFGAHQ 347
>pdb|3ABA|A Chain A, Crystal Structure Of Cyp105p1 In Complex With Filipin I
Length = 403
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 191 SFFEDPTRFVRLNHYPPCPAPHLALGVGRHK 221
+F E+P RF PAPHLA G G H+
Sbjct: 321 AFVEEPERFDITRR----PAPHLAFGFGAHQ 347
>pdb|3E5J|A Chain A, Crystal Structure Of Cyp105p1 Wild-type Ligand-free Form
pdb|3E5K|A Chain A, Crystal Structure Of Cyp105p1 Wild-Type 4-Phenylimidazole
Complex
Length = 403
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 191 SFFEDPTRFVRLNHYPPCPAPHLALGVGRHK 221
+F E+P RF PAPHLA G G H+
Sbjct: 321 AFVEEPERFDITRR----PAPHLAFGFGAHQ 347
>pdb|2Y7C|B Chain B, Atomic Model Of The Ocr-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534.
pdb|2Y7C|C Chain C, Atomic Model Of The Ocr-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534.
pdb|2Y7H|B Chain B, Atomic Model Of The Dna-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534.
pdb|2Y7H|C Chain C, Atomic Model Of The Dna-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534
Length = 529
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1 MGEADEAFVQAIEHRPKLSVAEDEGIPLI--DLSPLSFSNDANTKNIDDL 48
+GE D+ VQA+ H ++ E + I + ++ L + N A+ K+ DD
Sbjct: 78 LGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDF 127
>pdb|2KJP|A Chain A, Solution Structure Of Protein Ylbl (Bsu15050) From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr713a
Length = 91
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 112 KNVRDWKEVFDFVVEKR----ILMAASHEPEDKEVPETLNQWPDYP 153
KN + +++ D++ K+ + + E ++K V TL Q+PD P
Sbjct: 30 KNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEP 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,438,203
Number of Sequences: 62578
Number of extensions: 344402
Number of successful extensions: 790
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 20
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)