BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048499
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
           Transacylase From Burkholderia Pseudomallei Using Dried
           Seaweed As Nucleant Or Protease
          Length = 394

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 7   SGKRIAQATNTYKSPTRFDIVMIADDSLIETRNPQSKLVGRAKGLY 52
           + +R+A     Y   TR    +I DD ++ETR P + L G    +Y
Sbjct: 334 AAERVAAWNRDYPVGTRVRSSLIHDD-VLETRTPATVLFGHRAAVY 378


>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
          Length = 511

 Score = 27.3 bits (59), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 11  IAQATNTYKSPTRFDIVMIADDSLIETRNPQSKLVGRAKGLYGSTCQHQL 60
           +A     Y     F    I DD++I+T +P+S    R   + G+   HQL
Sbjct: 327 LAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQL 376


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,602,464
Number of Sequences: 62578
Number of extensions: 124350
Number of successful extensions: 245
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)