BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048499
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8NX92|RS3A_COPC7 40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 /
130 / ATCC MYA-4618 / FGSC 9003) GN=RPS1 PE=3 SV=1
Length = 256
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 22 TRFDIVMIADDSLIETRNPQSKLVGRAKG-------LYGSTCQHQLAII---MSMSF--- 68
TR D I S+ ETRN LV R++G L G + LA + SF
Sbjct: 25 TRKDWYDIKAPSIFETRNVGKTLVNRSQGLKNANDSLRGRIIEVSLADLNKDEEQSFRKI 84
Query: 69 -VFVDGPNNGNCISLFGNNKSIVPVHKMPIVSNITMFLLAGGYTVAQTHRVDFKSTD 124
+ VD NC++ F H M S+ L+ T+ + H VD K+TD
Sbjct: 85 KLRVDEIQGRNCLTNF---------HGMDFTSDKLRSLVRKWQTLVEAH-VDVKTTD 131
>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana
GN=SNF4 PE=1 SV=1
Length = 487
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 28 MIADDSLIETRNPQSKLVGRAKGLYGSTCQHQLAIIMSMSFVFVDGPNNGNCISL 82
M DD + T +P + V R G+ +H++++++S + P +G I+L
Sbjct: 121 MDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIAL 175
>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
PE=2 SV=2
Length = 184
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 22 TRFDIVMIADDSLIETRNPQSKLVGRAKGLYGSTCQHQLAIIMSMSFV 69
+ F +++ DD + + + SK VGRA+G Y ++ +S +FV
Sbjct: 71 SHFGNIIVFDDPITLSHSLSSKQVGRAQGFYIYDTKNTYTSWLSFTFV 118
>sp|C6DK50|KATG_PECCP Catalase-peroxidase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=katG PE=3 SV=1
Length = 724
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 41 QSKLVGRAKGLYGS----TCQHQLAIIMSMSFVFVDGPN-NGNCISLFGNNKSIVPVHKM 95
+ + + ++ G YGS T ++ LA + M ++V+ +GN L V +M
Sbjct: 193 EKEWLAKSTGRYGSDDRTTLENPLAAV-QMGLIYVNPEGVDGNPDPLRTAQDMRVTFSRM 251
Query: 96 PIVSNITMFLLAGGYTVAQTH 116
+ T+ L AGG+TV +TH
Sbjct: 252 AMNDEETVALTAGGHTVGKTH 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,583,269
Number of Sequences: 539616
Number of extensions: 1685825
Number of successful extensions: 3243
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3242
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)