Query 048499
Match_columns 135
No_of_seqs 108 out of 513
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 5.8E-50 1.3E-54 298.9 17.8 132 1-135 13-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.6 0.001 2.2E-08 50.8 10.4 91 21-118 33-127 (176)
3 PLN02343 allene oxide cyclase 96.9 0.013 2.9E-07 46.4 9.7 90 22-118 85-178 (229)
4 PF11528 DUF3224: Protein of u 86.7 10 0.00022 28.0 9.1 87 41-133 39-131 (134)
5 PTZ00312 inositol-1,4,5-tripho 49.3 54 0.0012 28.0 5.8 14 27-40 38-51 (356)
6 PF08239 SH3_3: Bacterial SH3 31.1 45 0.00098 19.6 2.0 16 33-48 4-19 (55)
7 PF06347 SH3_4: Bacterial SH3 25.2 52 0.0011 19.7 1.6 16 33-48 6-21 (55)
8 COG2331 Uncharacterized protei 16.9 54 0.0012 22.4 0.4 29 29-57 28-65 (82)
9 smart00287 SH3b Bacterial SH3 15.0 1.2E+02 0.0026 18.1 1.6 16 33-48 12-27 (63)
10 PF11849 DUF3369: Domain of un 13.4 2.4E+02 0.0052 21.0 3.2 21 90-110 71-91 (174)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=5.8e-50 Score=298.87 Aligned_cols=132 Identities=30% Similarity=0.472 Sum_probs=124.0
Q ss_pred CCCCCcceEEeeecCCCCCCCCCceEEEEeecceeecCCCCCCceeeeEEEEEEeCCCccEEEEEEEEEEecCCCCCceE
Q 048499 1 RQQQRRSGKRIAQATNTYKSPTRFDIVMIADDSLIETRNPQSKLVGRAKGLYGSTCQHQLAIIMSMSFVFVDGPNNGNCI 80 (135)
Q Consensus 1 ~~g~n~Ta~~va~~~~~~~s~~~FG~~~v~Dd~lt~gp~~~S~~VGraqG~~~~~~~~~~~~~~~~~~vf~~g~~~GSTl 80 (135)
++|||||++.|++++..+. .+||+++|+||||||||+++||+||||||+|+.+++++.+|+++++++|++++||||||
T Consensus 13 ~~g~n~t~~~v~~~~~~~~--~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~vF~~g~~~GStl 90 (144)
T PF03018_consen 13 VSGPNPTAVVVAEPPGPSS--SGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLVFEDGEYNGSTL 90 (144)
T ss_pred CCCCCCCEEEeccCCCCCC--CCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEEEEecccCCCeE
Confidence 4689999999999875433 39999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCCceeeEEEecccccccceEEEEEEEEEeecCCCCEEEEEEEEEEC
Q 048499 81 SLFGNNKSIVPVHKMPIVSNITMFLLAGGYTVAQTHRVDFKSTDAIVGCIVISVH 135 (135)
Q Consensus 81 ~v~G~~~~~~~~~E~~VVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~V~v~h 135 (135)
+++|+++..+++||||||||||+|||||||++++++ .+..+.++|+|||||++|
T Consensus 91 ~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 91 SVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 999999988999999999999999999999999999 345678999999999999
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.63 E-value=0.001 Score=50.81 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=66.2
Q ss_pred CCCceEEEEeecceeecCCCCCCceeeeEEEEEEeCC----CccEEEEEEEEEEecCCCCCceEEEecccCCCCCceeeE
Q 048499 21 PTRFDIVMIADDSLIETRNPQSKLVGRAKGLYGSTCQ----HQLAIIMSMSFVFVDGPNNGNCISLFGNNKSIVPVHKMP 96 (135)
Q Consensus 21 ~~~FG~~~v~Dd~lt~gp~~~S~~VGraqG~~~~~~~----~~~~~~~~~~~vf~~g~~~GSTl~v~G~~~~~~~~~E~~ 96 (135)
....|+.+-|.|+|..|.- -+-+|--+|+-+.-.. .+.-+--.+++.|-+ | | .|+++|..-. -...-++
T Consensus 33 ~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryEaiySfyfGd--y-G-hISvqGpy~t-~eDtyLA 105 (176)
T PF06351_consen 33 VNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYEAIYSFYFGD--Y-G-HISVQGPYLT-YEDTYLA 105 (176)
T ss_dssp SS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEEEEEEEE-GG--G-E-EEEEEEEEET-TS-EEEE
T ss_pred chhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEEEEEEEEecc--c-c-eEEEeccccc-ccceeEE
Confidence 4568999999999999876 6889999999776442 233344556777743 2 4 8999999854 3556789
Q ss_pred EEecccccccceEEEEEEEEEe
Q 048499 97 IVSNITMFLLAGGYTVAQTHRV 118 (135)
Q Consensus 97 VVGGTG~Fr~ArGya~~~t~~~ 118 (135)
|.||||-|+.|+|-+++..+-+
T Consensus 106 VTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 106 VTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEETTTT-EEEEEEEEEET
T ss_pred EeccCceeecceEEEEEEEeec
Confidence 9999999999999999887654
No 3
>PLN02343 allene oxide cyclase
Probab=96.87 E-value=0.013 Score=46.37 Aligned_cols=90 Identities=19% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCceEEEEeecceeecCCCCCCceeeeEEEEEEeCC----CccEEEEEEEEEEecCCCCCceEEEecccCCCCCceeeEE
Q 048499 22 TRFDIVMIADDSLIETRNPQSKLVGRAKGLYGSTCQ----HQLAIIMSMSFVFVDGPNNGNCISLFGNNKSIVPVHKMPI 97 (135)
Q Consensus 22 ~~FG~~~v~Dd~lt~gp~~~S~~VGraqG~~~~~~~----~~~~~~~~~~~vf~~g~~~GSTl~v~G~~~~~~~~~E~~V 97 (135)
...|+++-|.|.|..|.- -|.+|--.|+-+.-.. .+.-+--.+++.|-| | | .|++||..-.. +..-++|
T Consensus 85 ~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD--y-G-HisvqGpylty-eDt~Lai 157 (229)
T PLN02343 85 NALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAI 157 (229)
T ss_pred ccccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEecC--c-c-eeEEecccccc-ccceEEe
Confidence 568999999999998754 4778988998775543 234466677888844 3 4 89999998543 4567999
Q ss_pred EecccccccceEEEEEEEEEe
Q 048499 98 VSNITMFLLAGGYTVAQTHRV 118 (135)
Q Consensus 98 VGGTG~Fr~ArGya~~~t~~~ 118 (135)
.||+|-|..|+|-+++..+-+
T Consensus 158 TGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 158 TGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred ecCcceeecceeEEEEeeeee
Confidence 999999999999999887654
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=86.70 E-value=10 Score=28.01 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=51.9
Q ss_pred CCCceeeeEEEEEEeCC-CccEEEEEEEEEE-ecCCCCCceEEEe--cccCCCCCceeeEEE--ecccccccceEEEEEE
Q 048499 41 QSKLVGRAKGLYGSTCQ-HQLAIIMSMSFVF-VDGPNNGNCISLF--GNNKSIVPVHKMPIV--SNITMFLLAGGYTVAQ 114 (135)
Q Consensus 41 ~S~~VGraqG~~~~~~~-~~~~~~~~~~~vf-~~g~~~GSTl~v~--G~~~~~~~~~E~~VV--GGTG~Fr~ArGya~~~ 114 (135)
.-.+.|++++-|+.+-. ++.+.++.+..+= .-...+| |+.++ |...-.....+|-|| .|||++...+|-..++
T Consensus 39 ~G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~G-sFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~ 117 (134)
T PF11528_consen 39 SGDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSG-SFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTIT 117 (134)
T ss_dssp -TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEE
T ss_pred EeEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceE-EEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEE
Confidence 45577777888877654 4555555554322 1122456 55555 444333345789999 9999999999998877
Q ss_pred EEEeecCCCCEEEEEEEEE
Q 048499 115 THRVDFKSTDAIVGCIVIS 133 (135)
Q Consensus 115 t~~~~~~~~~~v~e~~V~v 133 (135)
... +...++|+..+
T Consensus 118 ~~~-----g~h~y~f~y~l 131 (134)
T PF11528_consen 118 IDE-----GQHAYDFEYTL 131 (134)
T ss_dssp EET-----TCEEEEEEEEE
T ss_pred ECC-----CCceeeEEEEC
Confidence 532 34567777655
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=49.28 E-value=54 Score=28.00 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=11.6
Q ss_pred EEEeecceeecCCC
Q 048499 27 VMIADDSLIETRNP 40 (135)
Q Consensus 27 ~~v~Dd~lt~gp~~ 40 (135)
+-|.|||+|-|.++
T Consensus 38 v~v~ddp~ty~~~~ 51 (356)
T PTZ00312 38 VPVVDDPLTYGSSP 51 (356)
T ss_pred eeeccCccccCCCC
Confidence 67889999988776
No 6
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=31.13 E-value=45 Score=19.62 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=13.2
Q ss_pred ceeecCCCCCCceeee
Q 048499 33 SLIETRNPQSKLVGRA 48 (135)
Q Consensus 33 ~lt~gp~~~S~~VGra 48 (135)
.|+.+|+.+|+.|+.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4788999999988874
No 7
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=25.20 E-value=52 Score=19.67 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.7
Q ss_pred ceeecCCCCCCceeee
Q 048499 33 SLIETRNPQSKLVGRA 48 (135)
Q Consensus 33 ~lt~gp~~~S~~VGra 48 (135)
+|+.+|+.+|+++.++
T Consensus 6 ~lr~~P~~~~~vv~~l 21 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARL 21 (55)
T ss_pred EEEcCCCCCCCEEEEE
Confidence 6889999999988776
No 8
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=16.90 E-value=54 Score=22.37 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=20.3
Q ss_pred EeecceeecCCCCC---Cceeee------EEEEEEeCC
Q 048499 29 IADDSLIETRNPQS---KLVGRA------KGLYGSTCQ 57 (135)
Q Consensus 29 v~Dd~lt~gp~~~S---~~VGra------qG~~~~~~~ 57 (135)
+.|||||+-|+-+. |+++|+ -|||+..+.
T Consensus 28 ~~ddplt~ce~c~a~~kk~l~~vgi~fKGSGfYvtDsR 65 (82)
T COG2331 28 MTDDPLTTCEECGARLKKLLNAVGIVFKGSGFYVTDSR 65 (82)
T ss_pred cccCccccChhhChHHHHhhccceEEEecceEEEeccc
Confidence 57999999998654 344443 677877765
No 9
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=15.00 E-value=1.2e+02 Score=18.10 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=12.7
Q ss_pred ceeecCCCCCCceeee
Q 048499 33 SLIETRNPQSKLVGRA 48 (135)
Q Consensus 33 ~lt~gp~~~S~~VGra 48 (135)
.|+.+|+.+|+.++.+
T Consensus 12 nlR~~p~~~~~~~~~l 27 (63)
T smart00287 12 NVRSGPGTSSPIIGTL 27 (63)
T ss_pred EEeCCCCCCCceeEEe
Confidence 5788999989877753
No 10
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=13.35 E-value=2.4e+02 Score=20.98 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=15.6
Q ss_pred CCceeeEEEecccccccceEE
Q 048499 90 VPVHKMPIVSNITMFLLAGGY 110 (135)
Q Consensus 90 ~~~~E~~VVGGTG~Fr~ArGy 110 (135)
....++-|++|||+|.-.-|-
T Consensus 71 ~~~~~~~VlaatG~f~~~~~~ 91 (174)
T PF11849_consen 71 SDDNEFRVLAATGRFESLIGQ 91 (174)
T ss_pred CCCCCEEEEEEeccchhhcCC
Confidence 345679999999999855443
Done!